Citrus Sinensis ID: 018303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccEEEEEccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccccccHHHHHHcccEEEEEcccHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHccccEEEccccccHHHHccccEEEEEcccHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccccHccEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEEcccccHHEEEEccccHHcccccccEEEEcccccHHHHHHHHHHHHHccccEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTLLVKSsyshrflssstpamsvcssfcpqlpsyfrqkpinslptkplfplsfkvfssqatgvsaedelpgrigflgmgimgtPMAQNLLKagcdvtvwnrtkskcdplislgakyqpspdevaaSCDVTFamladpesamdvacgkhgaasgmgpgkgyvdvstvdgdtsklinghikatgasfleapvsgskkpaedGQLIFLAAGDKSLYNTVAPLldimgksrfylgdvgngaAMKLVVNMIMGSMMATFSEGLlhsekvgldpnVLVEVVSQgaisapmyslkgpsmieslyptafplkhQQKDLRLALGLaesvsqstPIAAAANELYKVAkshglsdeDFSAVIEALKAKK
Flexible Loop (DISEMBL)
MTLLVKSSYSHRflssstpamsVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Low Complexity Region (SEG)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Disordered region (IsUnstruct)
*********************SVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP**DEVAASCDVTFAMLADP**AMDVACGK**********KGYVDVSTVDGDTSKLINGHIKATGASFL*************GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE*******IAAAANELYKV**********************
Disordered Region (DISOPRED)
*TLLV**SYSHRFLS*********************************************************IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA**
Disordered Region (DISEMBL)
**********************VCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Disordered Region (DISPRO)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
F4I907	358	Glyoxylate/succinic semia	yes	no	0.930	0.930	0.782	1e-148
Q9LSV0	289	Glyoxylate/succinic semia	no	no	0.793	0.982	0.584	3e-89
Q5ZLS7	553	Putative oxidoreductase G	yes	no	0.787	0.509	0.471	1e-70
Q5RKH0	552	Putative oxidoreductase G	yes	no	0.787	0.510	0.468	4e-70
A4FUF0	553	Putative oxidoreductase G	yes	no	0.787	0.509	0.468	5e-70
Q49A26	553	Putative oxidoreductase G	yes	no	0.787	0.509	0.468	7e-70
Q5R7T2	553	Putative oxidoreductase G	yes	no	0.787	0.509	0.460	1e-68
Q562D5	534	Putative oxidoreductase G	yes	no	0.787	0.528	0.460	1e-67
Q5RKN4	462	Putative oxidoreductase G	yes	no	0.787	0.610	0.445	5e-66
Q922P9	546	Putative oxidoreductase G	yes	no	0.770	0.505	0.457	6e-66

>sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1

 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/335 (78%), Positives = 294/335 (87%), Gaps = 2/335 (0%)

Query: 26  SFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSS-QATGVSAEDELPG-RIGFLGMGIMGT 83
           S CP++P  FR KPI+   +KP   L+++V+SS Q+T  S  DEL    IGFLGMGIMG+
Sbjct: 20  SICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGMGIMGS 79

Query: 84  PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 143
           PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPESA+DV
Sbjct: 80  PMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDV 139

Query: 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 203
           ACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 140 ACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAEDGQLI 199

Query: 204 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 263
           FL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+L S+K
Sbjct: 200 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGILLSQK 259

Query: 264 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323
           VGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQS
Sbjct: 260 VGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQS 319

Query: 324 TPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
           TPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 320 TPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1

>sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 202/284 (71%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 2   EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 62  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 121

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 122 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 181

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 182 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 241

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 242 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 1

>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 187/282 (66%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 387

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 388 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 447

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 448 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 507

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 508 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3

 Score =  264 bits (675), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 186/282 (65%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  +   G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 449 ATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 186/282 (65%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVW+RT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ P K YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 186/282 (65%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA    +P EV ++CD+TF
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A +ADP++A D+  G  G   G+ PGK YVD+STVD +T   +   I + G  FLEAPVS
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVS 369

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ +Y   +     MGK+ F+LG+VGN A M L++NM+ GS M
Sbjct: 370 GNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFM 429

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EG+  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 430 ATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 489

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 490 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 531

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1

 Score =  251 bits (642), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 126/283 (44%), Positives = 185/283 (65%), Gaps = 1/283 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           RIGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV + CD+TF
Sbjct: 177 RIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITF 236

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + ++DP++A D+  G  G   G+ PGK YV++STVD +T   ++  I + G  FLEAPVS
Sbjct: 237 SCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVS 296

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMGSM 250
           GS++ + DG L+ +AAGD+S+Y   +     MGK+ F++ G+ GN A M L++NM+ GS 
Sbjct: 297 GSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSF 356

Query: 251 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310
           MAT +EGL  ++  G      ++++ QG +++     K  ++++  +   + LKH QKDL
Sbjct: 357 MATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYLKHIQKDL 416

Query: 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           RLA+ + +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 417 RLAISMGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 459

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/282 (45%), Positives = 184/282 (65%), Gaps = 6/282 (2%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  K       GA+   +P EV ++CD+TF
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITF 321

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 322 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 381

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 382 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 441

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 442 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 501

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 502 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 543

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255560761	348	3-hydroxyisobutyrate dehydrogenase, puta	0.963	0.991	0.817	1e-161
449458161	356	PREDICTED: putative oxidoreductase GLYR1	0.983	0.988	0.815	1e-160
225442309	365	PREDICTED: putative oxidoreductase GLYR1	0.980	0.961	0.796	1e-159
297743096	343	unnamed protein product [Vitis vinifera]	0.932	0.973	0.823	1e-157
350538543	363	succinic semialdehyde reductase isofom2	0.938	0.925	0.784	1e-151
297850160	341	hypothetical protein ARALYDRAFT_471975 [	0.944	0.991	0.779	1e-149
20260472	343	unknown protein [Arabidopsis thaliana] g	0.941	0.982	0.776	1e-147
356550426	333	PREDICTED: putative oxidoreductase GLYR1	0.818	0.879	0.880	1e-147
79346256	358	glyoxylate reductase 2 [Arabidopsis thal	0.930	0.930	0.782	1e-146
357454619	339	hypothetical protein MTR_2g099910 [Medic	0.921	0.973	0.784	1e-146

>gi|255560761|ref|XP_002521394.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223539472|gb|EEF41062.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/357 (81%), Positives = 312/357 (87%), Gaps = 12/357 (3%)

Query: 1   MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
           MTLLVK + SH  LS+      +CSSFCPQLPS+ R  PI+S  T+     SFK FS  A
Sbjct: 1   MTLLVKINNSHSLLST------MCSSFCPQLPSHLRAIPISSFLTRQ----SFKAFSVSA 50

Query: 61  TGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP 120
           + V A D    R+GFLGMGIMGTPM QNL+KAGCDVTVWNRTKSKCDPLISLGAKY+PSP
Sbjct: 51  S-VKA-DGSSTRVGFLGMGIMGTPMTQNLIKAGCDVTVWNRTKSKCDPLISLGAKYRPSP 108

Query: 121 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 180
           +EVAA+ DVTFAMLADPESA++VACGK+GAA GMGPGKGYVDVSTVDG TSKLI GHIKA
Sbjct: 109 EEVAAASDVTFAMLADPESAVEVACGKNGAAGGMGPGKGYVDVSTVDGGTSKLIGGHIKA 168

Query: 181 TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK 240
           TGASFLEAPVSGSKKPAEDGQLIFL AGDK LY  VAP LDIMGKSRFYLGDVGNGAAMK
Sbjct: 169 TGASFLEAPVSGSKKPAEDGQLIFLTAGDKPLYEIVAPFLDIMGKSRFYLGDVGNGAAMK 228

Query: 241 LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA 300
           LVVNMIMGSMMATFSEG+L  EKVGLDPNV+VEVVSQGAISAPMYS+KGPSMI+S+YPTA
Sbjct: 229 LVVNMIMGSMMATFSEGILLGEKVGLDPNVIVEVVSQGAISAPMYSMKGPSMIKSIYPTA 288

Query: 301 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           FPLKHQQKDLRLALGLAESVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 289 FPLKHQQKDLRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDSDFSAVIEALKVK 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458161|ref|XP_004146816.1| PREDICTED: putative oxidoreductase GLYR1-like [Cucumis sativus]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/358 (81%), Positives = 314/358 (87%), Gaps = 6/358 (1%)

Query: 1   MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQA 60
           MT LV++ YSH  LSS+  AMS  SSFCP LP +F  +PI   PTKP F LSFK FS QA
Sbjct: 1   MTFLVRAPYSHH-LSSTAIAMS--SSFCPHLPLHFGTRPIFYFPTKPSFSLSFKPFSVQA 57

Query: 61  TGVSA-EDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 119
           T  S+ ++EL  R+GFLG+GIMGTPMAQNL+K+GCDVTVWNRTKSKCDPLI+LGAKYQ S
Sbjct: 58  TNASSGKEEL--RVGFLGLGIMGTPMAQNLIKSGCDVTVWNRTKSKCDPLINLGAKYQSS 115

Query: 120 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 179
           P EVAASCDVTFAMLADP SA++VACG++GAASGM PGKGYVDVSTVD  TSKLI+  IK
Sbjct: 116 PQEVAASCDVTFAMLADPNSALEVACGENGAASGMSPGKGYVDVSTVDDTTSKLISARIK 175

Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 239
            TGA FLEAPVSGSKKPAEDGQLIFL AGDKSLY TVAP LDIMGKSRFYLGDVGNGAAM
Sbjct: 176 DTGALFLEAPVSGSKKPAEDGQLIFLTAGDKSLYETVAPFLDIMGKSRFYLGDVGNGAAM 235

Query: 240 KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT 299
           KLVVNMIMGSMMA FSEGLL SEKVGLDPN +VEVVSQGAISAPMY LKGP+MI+S YPT
Sbjct: 236 KLVVNMIMGSMMAAFSEGLLLSEKVGLDPNDVVEVVSQGAISAPMYKLKGPAMIKSQYPT 295

Query: 300 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS GLSD+DFSAVIEALK K
Sbjct: 296 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSRGLSDQDFSAVIEALKVK 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442309|ref|XP_002280297.1| PREDICTED: putative oxidoreductase GLYR1-like [Vitis vinifera]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/359 (79%), Positives = 314/359 (87%), Gaps = 8/359 (2%)

Query: 4   LVKSSYSHRFLSSSTPA---MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSS 58
           LVKS   +  L+ S  A   M++CSSFCP Q+P++FR   PI S   KP    SFK FSS
Sbjct: 3   LVKSHCCYNLLNPSNTASLAMAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSS 59

Query: 59  QATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP 118
           Q    S +DE P R+GFLG+GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+ 
Sbjct: 60  QTATASTKDEFPARVGFLGLGIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYKS 119

Query: 119 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 178
           SP+EVAASCDVTFAMLADPESA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI  HI
Sbjct: 120 SPEEVAASCDVTFAMLADPESAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEHI 179

Query: 179 KATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA 238
           KATGA FLEAPVSGSKKPAEDGQLIFL  GDKSLY TVAPLLDIMGKSRF+LG VGNGAA
Sbjct: 180 KATGALFLEAPVSGSKKPAEDGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAA 239

Query: 239 MKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYP 298
           MKLVVNM+MGSMMA+FSEGLL  EKVGLDP+V+VEV+SQGAISAPM+S+KGPSM++S+YP
Sbjct: 240 MKLVVNMVMGSMMASFSEGLLLGEKVGLDPDVIVEVISQGAISAPMFSMKGPSMVKSVYP 299

Query: 299 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           TAFPLKHQQKDLRLALGLAESVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 300 TAFPLKHQQKDLRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDHDFSAVIEALKVK 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743096|emb|CBI35963.3| unnamed protein product [Vitis vinifera]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/339 (82%), Positives = 305/339 (89%), Gaps = 5/339 (1%)

Query: 21  MSVCSSFCP-QLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGM 78
           M++CSSFCP Q+P++FR   PI S   KP    SFK FSSQ    S +DE P R+GFLG+
Sbjct: 1   MAMCSSFCPPQVPNHFRGTTPIPSFLPKPP---SFKAFSSQTATASTKDEFPARVGFLGL 57

Query: 79  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 138
           GIMG+PMAQNL+K+GCDVTVWNRTKSKCDPLISLGAKY+ SP+EVAASCDVTFAMLADPE
Sbjct: 58  GIMGSPMAQNLIKSGCDVTVWNRTKSKCDPLISLGAKYKSSPEEVAASCDVTFAMLADPE 117

Query: 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 198
           SA+DVACGKHGAASG+GPGKGYVDVSTVDG TSKLI  HIKATGA FLEAPVSGSKKPAE
Sbjct: 118 SAVDVACGKHGAASGIGPGKGYVDVSTVDGATSKLIGEHIKATGALFLEAPVSGSKKPAE 177

Query: 199 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 258
           DGQLIFL  GDKSLY TVAPLLDIMGKSRF+LG VGNGAAMKLVVNM+MGSMMA+FSEGL
Sbjct: 178 DGQLIFLTGGDKSLYETVAPLLDIMGKSRFFLGSVGNGAAMKLVVNMVMGSMMASFSEGL 237

Query: 259 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 318
           L  EKVGLDP+V+VEV+SQGAISAPM+S+KGPSM++S+YPTAFPLKHQQKDLRLALGLAE
Sbjct: 238 LLGEKVGLDPDVIVEVISQGAISAPMFSMKGPSMVKSVYPTAFPLKHQQKDLRLALGLAE 297

Query: 319 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           SVSQ TPIAAAANELYKVAKSHGLSD DFSAVIEALK K
Sbjct: 298 SVSQPTPIAAAANELYKVAKSHGLSDHDFSAVIEALKVK 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538543|ref|NP_001233836.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum] gi|171854591|dbj|BAG16486.1| succinic semialdehyde reductase isofom2 [Solanum lycopersicum]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/338 (78%), Positives = 298/338 (88%), Gaps = 2/338 (0%)

Query: 21  MSVCSSFCPQLPSYFR-QKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMG 79
           M++CS+FCP+L  +   +K ++  P K  F ++ K FSSQ +   A+D LP  IGFLG+G
Sbjct: 1   MAMCSTFCPRLSFHLNCKKSLSLFPVKHRFFVTIKAFSSQTSAPKADD-LPASIGFLGLG 59

Query: 80  IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES 139
           IMG PMAQNL+KAGCDVTVWNRTKSKC+PLISLGAKY+ SP+EVAASCDVTFAMLADPES
Sbjct: 60  IMGNPMAQNLIKAGCDVTVWNRTKSKCEPLISLGAKYKSSPEEVAASCDVTFAMLADPES 119

Query: 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAED 199
           A DVACGK+GAA GMGPGKGYVD STVDG+TSKLI  HI+ATGA FLEAPVSGSKKPAED
Sbjct: 120 AADVACGKYGAAKGMGPGKGYVDASTVDGETSKLICEHIRATGAHFLEAPVSGSKKPAED 179

Query: 200 GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLL 259
           GQLIFL AGD  LY+  APLLDIMGKSRFYLG+VGNGAAMKLVVNM+MGSMMA+F+EGL+
Sbjct: 180 GQLIFLTAGDSVLYDKAAPLLDIMGKSRFYLGEVGNGAAMKLVVNMVMGSMMASFAEGLV 239

Query: 260 HSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAES 319
            SEKVGLDP+VLVEV+SQGAISAPMY++KGPSM++S YPTAFPLKHQQKDLRLALGLAES
Sbjct: 240 LSEKVGLDPSVLVEVISQGAISAPMYAVKGPSMVKSSYPTAFPLKHQQKDLRLALGLAES 299

Query: 320 VSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           VSQ  PIAAA NELYKVAKSHGLSD+DFSAVIEALK K
Sbjct: 300 VSQPIPIAAATNELYKVAKSHGLSDQDFSAVIEALKVK 337

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850160|ref|XP_002892961.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata] gi|297338803|gb|EFH69220.1| hypothetical protein ARALYDRAFT_471975 [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/340 (77%), Positives = 299/340 (87%), Gaps = 2/340 (0%)

Query: 21  MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSS-QATGVSAEDELPG-RIGFLGM 78
           M++CS FCP++P  FR KP +   +KP   LS++V+SS Q+T  S +DEL    IGFLGM
Sbjct: 1   MALCSIFCPRIPLRFRPKPKSPFLSKPQICLSYRVYSSLQSTTPSTKDELGTVSIGFLGM 60

Query: 79  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 138
           GIMG+PMAQNL+KAGCDVTVWNR+KSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPE
Sbjct: 61  GIMGSPMAQNLIKAGCDVTVWNRSKSKCDPLVRLGAKYKSSPEEVTATCDLTFAMLADPE 120

Query: 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 198
           SA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAE
Sbjct: 121 SAIDVACGKNGAVFGISSGKGYVDVSTVDAASSILISKQIKDTGALFLEAPVSGSKKPAE 180

Query: 199 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 258
           DGQLIFL AGDK LY   AP LDIMGKSRFYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+
Sbjct: 181 DGQLIFLTAGDKLLYEKAAPFLDIMGKSRFYLGEVGNGAAMKLVVNMIMGSMMASFAEGI 240

Query: 259 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 318
           L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAE
Sbjct: 241 LLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAE 300

Query: 319 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
           SVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 301 SVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20260472|gb|AAM13134.1| unknown protein [Arabidopsis thaliana] gi|21553816|gb|AAM62909.1| unknown [Arabidopsis thaliana] gi|30984568|gb|AAP42747.1| At1g17650 [Arabidopsis thaliana]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/340 (77%), Positives = 298/340 (87%), Gaps = 3/340 (0%)

Query: 21  MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSS-QATGVSAEDELPG-RIGFLGM 78
           M++CS  CP++P  FR KPI+   +KP   L+++V+SS Q+T  S  DEL    IGFLGM
Sbjct: 1   MALCS-ICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGM 59

Query: 79  GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE 138
           GIMG+PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPE
Sbjct: 60  GIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPE 119

Query: 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 198
           SA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAE
Sbjct: 120 SAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAE 179

Query: 199 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 258
           DGQLIFL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+
Sbjct: 180 DGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGI 239

Query: 259 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAE 318
           L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAE
Sbjct: 240 LLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAE 299

Query: 319 SVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
           SVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 300 SVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550426|ref|XP_003543588.1| PREDICTED: putative oxidoreductase GLYR1-like [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/293 (88%), Positives = 278/293 (94%)

Query: 65  AEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA 124
           A  E P RIGFLG+GIMG+PMA NLLKAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVA
Sbjct: 34  AVTEPPARIGFLGLGIMGSPMAHNLLKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVA 93

Query: 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 184
           ASCDVTFAMLADP+SA+DVACGKHGAA+GMGPGKGYVDVSTVDGDTSKLINGH+K+TGA 
Sbjct: 94  ASCDVTFAMLADPQSAVDVACGKHGAANGMGPGKGYVDVSTVDGDTSKLINGHMKSTGAL 153

Query: 185 FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVN 244
           FLEAPVSGSKKPAEDGQLIFL AGDK+LY  V  LLDIMGKS+FYLGDVGNGAAMKLVVN
Sbjct: 154 FLEAPVSGSKKPAEDGQLIFLTAGDKNLYEAVGSLLDIMGKSKFYLGDVGNGAAMKLVVN 213

Query: 245 MIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLK 304
           MIMGSMMA+FSEGLL SEKVGLDP+VLV+VVSQGAISAPMYS KGPSMI+SLYPTAFPLK
Sbjct: 214 MIMGSMMASFSEGLLLSEKVGLDPDVLVQVVSQGAISAPMYSTKGPSMIQSLYPTAFPLK 273

Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           HQQKDLRLALGLAESVSQ TPIA+AANELYKVAKS+GLSD+DFSAVIEALK+K
Sbjct: 274 HQQKDLRLALGLAESVSQPTPIASAANELYKVAKSNGLSDQDFSAVIEALKSK 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79346256|ref|NP_564030.2| glyoxylate reductase 2 [Arabidopsis thaliana] gi|449061823|sp|F4I907.1|GLYR2_ARATH RecName: Full=Glyoxylate/succinic semialdehyde reductase 2, chloroplastic; Short=AtGLYR2; Short=AtGR2; Short=SSA reductase 2; Flags: Precursor gi|332191497|gb|AEE29618.1| glyoxylate reductase 2 [Arabidopsis thaliana]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/335 (78%), Positives = 294/335 (87%), Gaps = 2/335 (0%)

Query: 26  SFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSS-QATGVSAEDELPG-RIGFLGMGIMGT 83
           S CP++P  FR KPI+   +KP   L+++V+SS Q+T  S  DEL    IGFLGMGIMG+
Sbjct: 20  SICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGTVSIGFLGMGIMGS 79

Query: 84  PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 143
           PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+TFAMLADPESA+DV
Sbjct: 80  PMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLTFAMLADPESAIDV 139

Query: 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 203
           ACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 140 ACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPVSGSKKPAEDGQLI 199

Query: 204 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 263
           FL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSMMA+F+EG+L S+K
Sbjct: 200 FLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSMMASFAEGILLSQK 259

Query: 264 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323
           VGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+RLALGLAESVSQS
Sbjct: 260 VGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQS 319

Query: 324 TPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
           TPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct: 320 TPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454619|ref|XP_003597590.1| hypothetical protein MTR_2g099910 [Medicago truncatula] gi|355486638|gb|AES67841.1| hypothetical protein MTR_2g099910 [Medicago truncatula]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/334 (78%), Positives = 285/334 (85%), Gaps = 4/334 (1%)

Query: 24  CSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT 83
           CS F   + S F     NS    P         S+         + P RIGFLG+GIMGT
Sbjct: 3   CSQFATTMRSAFSLHHFNS----PRLSRHVSNVSASLQPQGQGTDTPPRIGFLGLGIMGT 58

Query: 84  PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 143
           PMA NL+KAG D+TVWNRTKSKCDPLISLGAKY+PSP+EVAASCD+TFAMLADP+SA+DV
Sbjct: 59  PMALNLIKAGVDLTVWNRTKSKCDPLISLGAKYKPSPEEVAASCDLTFAMLADPQSAVDV 118

Query: 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI 203
           ACGKHG A+G+GPGKGYVDVSTVD DTSKLINGHIK+TGA FLEAPVSGSKKPAEDGQLI
Sbjct: 119 ACGKHGVANGIGPGKGYVDVSTVDVDTSKLINGHIKSTGALFLEAPVSGSKKPAEDGQLI 178

Query: 204 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK 263
           FL AGD++LY TVAP LDIMGKS+FYLGDVGNGAAMKLVVNMIMGSMMA+FSEGLL SEK
Sbjct: 179 FLTAGDRNLYETVAPFLDIMGKSKFYLGDVGNGAAMKLVVNMIMGSMMASFSEGLLLSEK 238

Query: 264 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323
           VGLDP VLVEV+SQGAI+APMYS+KGPSMI+S YPTAFPLKHQQKDLRLALGLAESVSQ 
Sbjct: 239 VGLDPKVLVEVISQGAINAPMYSMKGPSMIQSNYPTAFPLKHQQKDLRLALGLAESVSQP 298

Query: 324 TPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
            PIAAAANELYKVAKSHG SDEDFSAVIEALK+K
Sbjct: 299 IPIAAAANELYKVAKSHGYSDEDFSAVIEALKSK 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2007923	358	GLYR2 "glyoxylate reductase 2"	0.963	0.963	0.772	5.8e-137
TAIR|locus:2094518	289	GLYR1 "glyoxylate reductase 1"	0.790	0.979	0.586	3.6e-82
TIGR_CMR|GSU_1372	286	GSU_1372 "3-hydroxyisobutyrate	0.787	0.986	0.539	2.7e-77
UNIPROTKB|F1NFS2	575	GLYR1 "Putative oxidoreductase	0.787	0.490	0.471	1.5e-65
UNIPROTKB|F1NFS3	553	GLYR1 "Putative oxidoreductase	0.787	0.509	0.471	1.5e-65
UNIPROTKB|Q5ZLS7	553	GLYR1 "Putative oxidoreductase	0.787	0.509	0.471	1.5e-65
UNIPROTKB|A4FUF0	553	GLYR1 "Putative oxidoreductase	0.787	0.509	0.468	3.2e-65
UNIPROTKB|E2QVM3	575	GLYR1 "Uncharacterized protein	0.787	0.490	0.468	3.2e-65
UNIPROTKB|F1RK86	553	GLYR1 "Uncharacterized protein	0.787	0.509	0.468	3.2e-65
UNIPROTKB|I3LMN3	539	GLYR1 "Uncharacterized protein	0.787	0.523	0.468	3.2e-65

TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 269/348 (77%), Positives = 304/348 (87%)

Query:    13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSS-QATGVSAEDELPG 71
             F SSS+ AM++CS  CP++P  FR KPI+   +KP   L+++V+SS Q+T  S  DEL  
Sbjct:     8 FASSSSKAMALCS-ICPRIPLRFRPKPISPFLSKPQICLAYRVYSSLQSTTPSTRDELGT 66

Query:    72 -RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 130
               IGFLGMGIMG+PMAQNL+KAGCDVTVWNRTKSKCDPL+ LGAKY+ SP+EV A+CD+T
Sbjct:    67 VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126

Query:   131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 190
             FAMLADPESA+DVACGK+GA  G+  GKGYVDVSTVD  +S LI+  IK TGA FLEAPV
Sbjct:   127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186

Query:   191 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM 250
             SGSKKPAEDGQLIFL AGDK LY   AP LDIMGKS+FYLG+VGNGAAMKLVVNMIMGSM
Sbjct:   187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSM 246

Query:   251 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310
             MA+F+EG+L S+KVGLDPNVLVEVVSQGAI+APMYSLKGPSMI+S+YPTAFPLKHQQKD+
Sbjct:   247 MASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDM 306

Query:   311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
             RLALGLAESVSQSTPIAAAANELYKVAKS+GLSDEDFSAVIEALKA K
Sbjct:   307 RLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 166/283 (58%), Positives = 202/283 (71%)

Query:    73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
             +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T A
Sbjct:     3 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 62

Query:   133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
             ML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVSG
Sbjct:    63 MLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSG 122

Query:   193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
             SKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM 
Sbjct:   123 SKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMN 182

Query:   253 TFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRL 312
              FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+RL
Sbjct:   183 AFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRL 242

Query:   313 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
             AL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct:   243 ALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003858 "3-hydroxybutyrate dehydrogenase activity" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 152/282 (53%), Positives = 195/282 (69%)

Query:    74 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 133
             GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T AM
Sbjct:     5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64

Query:   134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 193
             LADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVSG+
Sbjct:    65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124

Query:   194 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 253
             KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM  
Sbjct:   125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184

Query:   254 FSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 313
               EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLRLA
Sbjct:   185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244

Query:   314 LGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
             + L + + Q    AA ANE +K A++ G +DEDF+AV   L+
Sbjct:   245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

GO:0019577 "aldaric acid metabolic process" evidence=ISS

UNIPROTKB|F1NFS2 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 133/282 (47%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   291 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 350

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   351 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 410

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   411 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 470

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   471 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 530

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   531 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 572

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 133/282 (47%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 133/282 (47%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L +SV+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QVM3 GLYR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   291 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 350

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   351 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 410

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   411 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 470

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   471 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 530

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   531 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 572

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RK86 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 550

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LMN3 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 132/282 (46%), Positives = 187/282 (66%)

Query:    72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct:   255 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 314

Query:   132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct:   315 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 374

Query:   192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct:   375 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 434

Query:   252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct:   435 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 494

Query:   312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
             LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct:   495 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 536

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I907	GLYR2_ARATH	1, ., 1, ., 1, ., n, 1, 1	0.7820	0.9301	0.9301	yes	no
O33730	Y1503_SHEFN	1, ., 1, ., -, ., -	0.3055	0.8016	0.9862	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	3e-93
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	2e-56
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	4e-54
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	5e-51
TIGR01692	288	TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen	1e-46
PRK15059	292	PRK15059, PRK15059, tartronate semialdehyde reduct	2e-46
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	8e-35
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	5e-26
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	5e-18
PRK12490	299	PRK12490, PRK12490, 6-phosphogluconate dehydrogena	3e-12
COG1023	300	COG1023, Gnd, Predicted 6-phosphogluconate dehydro	3e-10
PRK09599	301	PRK09599, PRK09599, 6-phosphogluconate dehydrogena	9e-08
TIGR00872	298	TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena	5e-06
TIGR00873	467	TIGR00873, gnd, 6-phosphogluconate dehydrogenase (	0.001
pfam03807	93	pfam03807, F420_oxidored, NADP oxidoreductase coen	0.001
COG0345	266	COG0345, ProC, Pyrroline-5-carboxylate reductase [	0.001
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	0.001
PLN02350	493	PLN02350, PLN02350, phosphogluconate dehydrogenase	0.003
COG0362	473	COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca	0.003

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score =  279 bits (716), Expect = 3e-93
 Identities = 115/285 (40%), Positives = 166/285 (58%), Gaps = 1/285 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVT 130
           +I F+G+GIMG+PMA NLLKAG +VTV+NRT  K  + L + GA    SP E AA  DV 
Sbjct: 2   KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVV 61

Query: 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 190
             ML D  +   V  G++G   G+ PG   +D+ST+  +T++ +   + A G  FL+APV
Sbjct: 62  ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV 121

Query: 191 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM 250
           SG    A  G L  +  GD   +    P+L+ MGK+  ++G VG G A KL  N+++   
Sbjct: 122 SGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGN 181

Query: 251 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310
           +A  +E L  +EK GLDP+V++EV+S GA  + +    GP M+E  +   F +    KDL
Sbjct: 182 IAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDL 241

Query: 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
            LAL  A+ +    P+ A A ELY  A + G  +EDFSA+I+ L+
Sbjct: 242 GLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286

Length = 286

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score =  185 bits (472), Expect = 2e-56
 Identities = 91/280 (32%), Positives = 149/280 (53%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMG PM++NLLKAG  + V++R       +I+ GA+   +   VA  CDV  
Sbjct: 4   KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            ML +     +VA G++G   G  PG   +D+S++    S+ I   +KA G   L+APVS
Sbjct: 64  TMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVS 123

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A DG L  +  GDK++++    L+  M  S  + GD+G G   KL   +I+   +
Sbjct: 124 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNI 183

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           A  SE L+ + K G++P+++ + +  G   + +   K P +++  +   F +    KDL 
Sbjct: 184 AAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 243

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 351
            AL  +  V    P+ AA  E+ +  K+ GL   D SA+ 
Sbjct: 244 NALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALA 283

Length = 296

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score =  179 bits (455), Expect = 4e-54
 Identities = 92/284 (32%), Positives = 154/284 (54%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMG+PM+ NL KAG  + V        D L++ GA    +  +V    DV F
Sbjct: 1   KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            M+ D     +VA G++G   G  PGK  VD+S++    SK     +K  G  +L+APVS
Sbjct: 61  TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A +G L  +  GD+++++ V PL + +GK+   +G  G+G   K+   +I+   +
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNI 180

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              SE L+ + K G+DP  + + +  G   + +  +KG  +I+  +   F +   QKDL 
Sbjct: 181 EAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LAL  A++V  + P  A   EL+   +++G    D SA+++AL+
Sbjct: 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALE 284

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score =  167 bits (425), Expect = 5e-51
 Identities = 66/162 (40%), Positives = 92/162 (56%), Gaps = 1/162 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGF+G+G+MG+PMA NLLKAG  VTV+NRT  K + L++ GA    SP E  AS DV  
Sbjct: 2   KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVI 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            M+    +   V  G+ G   G+ PG   +D ST D D ++     +   G  FL+APVS
Sbjct: 62  TMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPVS 121

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF-YLGD 232
           G ++ AE G L  +  GD+  +  V P+L+ MG     Y+G 
Sbjct: 122 GGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIGP 163

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase

 Score =  159 bits (405), Expect = 1e-46
 Identities = 97/290 (33%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 75  FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 134
           F+G+G MG PMA NLLKAG  V V++      +  ++ GA+   SP E A   D    ML
Sbjct: 1   FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60

Query: 135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 194
              +  + V  G  G    +  G   +D ST+D D+++ +     A GA F++APVSG  
Sbjct: 61  PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120

Query: 195 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATF 254
             A  G L F+  G    +    P+L  MG++  + GD G G A K+  NM++G  M   
Sbjct: 121 GGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGT 180

Query: 255 SEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG----PSMIESL-----YPTAFPLKH 305
           +E +   EK+GLDP VL E+ +    S   +S       P ++        Y   F    
Sbjct: 181 AEAMALGEKLGLDPKVLFEIANTS--SGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTAL 238

Query: 306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
             KDL LA   A+S    TP+ A A +LY +    G   +DFS+VI+ L+
Sbjct: 239 MLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288

3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288

>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional

 Score =  159 bits (404), Expect = 2e-46
 Identities = 91/284 (32%), Positives = 152/284 (53%), Gaps = 1/284 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMGTPMA NL +AG  + V        D L+SLGA    +  +V  + D+ F
Sbjct: 2   KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIF 60

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            M+ D     +V  G++G       GK  VD+S++    +K     +   G  +L+APVS
Sbjct: 61  IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS 120

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A +G L  +  GD++++  V PL +++GK+   +G  G+G   K+   +I+   +
Sbjct: 121 GGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNI 180

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              SE LL + K G DP  + + +  G  S+ +  + G  MI+  +   F +   QKDL 
Sbjct: 181 EAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLN 240

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LAL  A++++ + P  A   EL+    ++G S  D SA+++AL+
Sbjct: 241 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALE 284

Length = 292

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score =  129 bits (325), Expect = 8e-35
 Identities = 87/291 (29%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
           I F+G+G MG+PMA NLLK G  + V++      D L+  GA    SP + AA  +    
Sbjct: 4   IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63

Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
           ML + +    V  G++G   G+      +D+ST+    +  +   ++A G S ++ PV  
Sbjct: 64  MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123

Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
           +   A  G L+ LA G         P+L  MG      G  G G  +KL+ N +  ++ A
Sbjct: 124 TSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNA 183

Query: 253 TFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLKGPSMIESLYPTAFPLKH 305
             +E  +  E +GL  +V ++V+S  A        + P   LKG      L P AF +  
Sbjct: 184 LSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKG-----DLSP-AFMIDL 237

Query: 306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356
             KDL +AL +A  +    P+ AA+ E+Y  A++ G   +D+SA++E ++ 
Sbjct: 238 AHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288

Length = 296

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score =  109 bits (273), Expect = 5e-26
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 3/284 (1%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           RIGF+G+G MG  MA +LLK+   V  ++  K       + G     SP EVA   DV  
Sbjct: 326 RIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLV 385

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP 189
            M+A+   A +V  G  GA S +  G   V  STV       +   ++  G     ++AP
Sbjct: 386 IMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445

Query: 190 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIMG 248
           VSG  K A  G L  +A+G      +   +L  + +  + + G  G G+ +K+V  ++ G
Sbjct: 446 VSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAG 505

Query: 249 SMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQK 308
             +A+ +E +    ++GL+   L +++S    ++ M+  + P M+++ Y     L    K
Sbjct: 506 VHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVK 565

Query: 309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352
           DL +      S      ++  A++L+    + G    D +AV++
Sbjct: 566 DLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVK 609

Length = 1378

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 3/284 (1%)

Query: 71  GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 130
           G +GF+G+  +   +A +LL++G  V  +  +    +    LG     SP E A      
Sbjct: 5   GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAAL 64

Query: 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL-EA 188
             +L+ P+   DV  G  GAA G+  G   +  ST+      KL     +     FL +A
Sbjct: 65  VVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124

Query: 189 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL-GDVGNGAAMKLVVNMIM 247
            VS       +G+L+ +A+G         P L  M +  +   G++G G+ +K+V  ++ 
Sbjct: 125 YVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLE 184

Query: 248 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 307
           G  +   +E +    + G+ P ++ +++S  A S+ ++    P +++  Y     L    
Sbjct: 185 GIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244

Query: 308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 351
           ++L + L +A+S+    P+ A A++      S    D+  +++ 
Sbjct: 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLA 288

Length = 1378

>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 22/222 (9%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCD--- 128
           ++G +G+G MG  MA+ L + G +V  ++  +   D    LG   + S +E+ +  +   
Sbjct: 2   KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPR 61

Query: 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK----LINGHIKAT-GA 183
             + M+   E    V          + PG    D+  VDG  S+    L      A  G 
Sbjct: 62  TIWVMVPAGEVTESVI---KDLYPLLSPG----DI-VVDGGNSRYKDDLRRAEELAERGI 113

Query: 184 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM---GKSRFYLGDVGNGAAMK 240
            +++   SG      +G  + +  GDK +Y+ + P+   +   G    + G VG+G  +K
Sbjct: 114 HYVDCGTSGGVWGLRNGYCL-MVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLK 172

Query: 241 LVVNMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 280
           +V N I   MM  ++EG  LL       D   +  +   G++
Sbjct: 173 MVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSV 214

Length = 299

>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 18/219 (8%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDV 129
           IG +G+G MG  + + LL  G DV  ++  ++  + L   GA    S DE+ A   +  +
Sbjct: 3   IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62

Query: 130 TFAML--ADP-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186
            + M+   D  ++ +D        A  +  G   +D    +   S      +   G  FL
Sbjct: 63  VWLMVPAGDITDAVID------DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116

Query: 187 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF---YLGDVGNGAAMKLVV 243
           +   SG    AE G    +  GD+     + P+   +        Y G  G+G  +K+V 
Sbjct: 117 DVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVH 175

Query: 244 NMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 280
           N I   MM   +EG  LL +     D   + EV + G++
Sbjct: 176 NGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSV 214

Length = 300

>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 52.8 bits (128), Expect = 9e-08
 Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 55/239 (23%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCD--- 128
           ++G +G+G MG  MA+ LL+ G +V  ++R     + L   GA    S +E+ A      
Sbjct: 2   QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPR 61

Query: 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD--------GDTSKLING---- 176
           V + M+  P           G            D +T+D        GD   +I+G    
Sbjct: 62  VVWLMV--P----------AGEI---------TD-ATIDELAPLLSPGDI--VIDGGNSY 97

Query: 177 ---------HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 227
                     +   G  F++   SG     E G    +  GDK     + P+   +    
Sbjct: 98  YKDDIRRAELLAEKGIHFVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRA 156

Query: 228 ----FYLGDVGNGAAMKLVVNMIMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 280
                + G VG G  +K+V N I   MM  ++EG  LL + +  LD   + EV  +G++
Sbjct: 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSV 215

Length = 301

>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 13/217 (5%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCD 128
           ++G +G+G MG  + + L K G D   ++  +     +         +  E++    +  
Sbjct: 2   QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPR 61

Query: 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188
           V + M+  P   +D        A  +  G   +D        S      +K  G   L+ 
Sbjct: 62  VVWVMV--PHGIVDAVL--EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC 117

Query: 189 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL---LDIMGKSRFYLGDVGNGAAMKLVVNM 245
             SG     E G   F+  GD   +    PL   +    +   Y G  G+G  +K+V N 
Sbjct: 118 GTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNG 176

Query: 246 IMGSMMATFSEG--LLHSEKVGLDPNVLVEVVSQGAI 280
           I   MMA  +EG  +L + +   D   +  V  +G++
Sbjct: 177 IEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSV 213

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298

>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 131
           IG +G+ +MG+ +A N+   G  V+V+NRT  K D  +   A++      V A     F 
Sbjct: 2   IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL---AEHAKGKKIVGAYSIEEFV 58

Query: 132 AMLADPESAMDVACGKHGAASG---------MGPGKGYVDVSTVDG------DTSKLING 176
             L  P   M +   K GA            +  G    D+  +DG      DT +    
Sbjct: 59  QSLERPRKIMLMV--KAGAPVDAVINQLLPLLEKG----DI-IIDGGNSHYPDTERR-YK 110

Query: 177 HIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD-IMGKSR-----FYL 230
            +KA G  F+ + VSG ++ A  G  I +  G    +  VAP+   I  K        ++
Sbjct: 111 ELKAKGILFVGSGVSGGEEGARKGPSI-MPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWI 169

Query: 231 GDVGNGAAMKLVVNMIMGSMMATFSEG 257
           G  G G  +K+V N I    M    E 
Sbjct: 170 GPDGAGHYVKMVHNGIEYGDMQLICEA 196

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467

>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLI-SLGAKYQP-SPDEVAASCD 128
           +IG +G G MG  +A+ L  AG +V +  +R   K   L   LG K    S +E     D
Sbjct: 1   KIGIIGAGNMGEALARGLAAAGHEVVIANSRNPEKAAALAEELGVKATAVSNEEAVEEAD 60

Query: 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 164
           V F  +  PE A +V        + +  GK  + ++
Sbjct: 61  VVFLAVK-PEDAPEVL----AELADLLKGKLVISIT 91

Length = 93

>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 126
           +IGF+G G MG  +   LLK+G     ++ V NR++ K   L +  G        E    
Sbjct: 3   KIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE 62

Query: 127 CDVTF 131
            DV F
Sbjct: 63  ADVVF 67

Length = 266

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 11/79 (13%)

Query: 58  SQATGVSAEDELPGR------IGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLI 110
               G    D L GR      +G +G+G +G  +A+  LKA G  V  ++R         
Sbjct: 17  QVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVAR-RLKAFGMKVIAYDRYPK--AEAE 73

Query: 111 SLGAKYQPSPDEVAASCDV 129
           +LGA+Y  S DE+ A  DV
Sbjct: 74  ALGARYV-SLDELLAESDV 91

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating)

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 65  AEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107
                  RIG  G+ +MG  +A N+ + G  ++V+NRT SK D
Sbjct: 1   MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 43

Length = 493

>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 38/208 (18%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPD--EVAASC 127
           IG +G+ +MG+ +A N+   G  V V+NRT  K D  +   + G    P+    E  AS 
Sbjct: 6   IGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVAS- 64

Query: 128 DVTFAMLADPESAM-DVACGK------HGAASGMGPGKGYVDVSTVDG------DTSKLI 174
                 L  P   +  V  G             +  G    D+  +DG      DT +  
Sbjct: 65  ------LEKPRKILLMVKAGTPVDAVIEQLLPLLEKG----DI-IIDGGNSHYKDTIRR- 112

Query: 175 NGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR-----F 228
           N  +   G  F+   VSG ++ A  G  I +  G K  Y  VAP+L  I  K        
Sbjct: 113 NKELSEKGILFVGMGVSGGEEGARHGPSI-MPGGQKEAYELVAPILTKIAAKVDGEPCCT 171

Query: 229 YLGDVGNGAAMKLVVNMIMGSMMATFSE 256
           ++G  G G  +K+V N I    M   +E
Sbjct: 172 WIGPDGAGHFVKMVHNGIEYGDMQLIAE 199

Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
KOG0409	327	consensus Predicted dehydrogenase [General functio	100.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	100.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	100.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	100.0
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	100.0
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	100.0
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	100.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	100.0
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.97
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.97
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.97
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.96
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.96
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.95
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.95
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.95
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.95
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.94
PLN03139	386	formate dehydrogenase; Provisional	99.94
PRK07574	385	formate dehydrogenase; Provisional	99.94
PRK06487	317	glycerate dehydrogenase; Provisional	99.94
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.93
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.93
PRK06932	314	glycerate dehydrogenase; Provisional	99.93
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.93
PLN02306	386	hydroxypyruvate reductase	99.93
PRK13243	333	glyoxylate reductase; Reviewed	99.93
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.93
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	99.93
PRK06436	303	glycerate dehydrogenase; Provisional	99.93
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.93
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.93
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.92
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.92
PLN02928	347	oxidoreductase family protein	99.92
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.92
PRK12480	330	D-lactate dehydrogenase; Provisional	99.92
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.92
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.91
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.9
PRK08605	332	D-lactate dehydrogenase; Validated	99.9
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.89
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.87
PLN02688	266	pyrroline-5-carboxylate reductase	99.87
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.86
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.85
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.85
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.84
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.84
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.84
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.83
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.81
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.81
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	99.8
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.79
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.79
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.79
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.78
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.78
PRK08507	275	prephenate dehydrogenase; Validated	99.78
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.78
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.77
PRK08655	437	prephenate dehydrogenase; Provisional	99.77
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.76
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.76
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.76
PRK07417	279	arogenate dehydrogenase; Reviewed	99.76
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.75
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.74
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.74
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.74
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.73
PRK07680	273	late competence protein ComER; Validated	99.73
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.72
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.72
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.71
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.7
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.69
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.69
PRK06545	359	prephenate dehydrogenase; Validated	99.69
PLN02256	304	arogenate dehydrogenase	99.68
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.67
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.67
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.67
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.66
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.65
PLN02712	667	arogenate dehydrogenase	99.63
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.63
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.62
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.62
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.61
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.57
PLN02712	667	arogenate dehydrogenase	99.57
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.56
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.53
PRK08818	370	prephenate dehydrogenase; Provisional	99.52
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.52
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.49
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.49
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.48
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.48
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.46
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.45
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.45
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.45
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.44
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.41
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.4
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.37
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.37
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.35
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.34
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.27
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.24
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.23
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.16
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.14
PLN02494	477	adenosylhomocysteinase	99.13
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.13
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.13
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	99.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.09
PRK06444	197	prephenate dehydrogenase; Provisional	99.01
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.96
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.94
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.91
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.9
PRK05225	487	ketol-acid reductoisomerase; Validated	98.89
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.89
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.85
KOG0067	435	consensus Transcription factor CtBP [Transcription	98.84
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.78
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.73
PRK06141	314	ornithine cyclodeaminase; Validated	98.71
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.7
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.68
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.65
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.6
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.6
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.59
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.53
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.49
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.47
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.44
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.44
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.4
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.4
COG5495	289	Uncharacterized conserved protein [Function unknow	98.39
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.37
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.37
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.35
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.34
PRK07340	304	ornithine cyclodeaminase; Validated	98.32
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.32
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	98.31
PF00984	96	UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas	98.31
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.3
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	98.3
PLN00203	519	glutamyl-tRNA reductase	98.29
PRK08618	325	ornithine cyclodeaminase; Validated	98.27
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.27
PRK06407	301	ornithine cyclodeaminase; Provisional	98.22
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.22
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.21
PRK06823	315	ornithine cyclodeaminase; Validated	98.21
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	98.19
PRK06046	326	alanine dehydrogenase; Validated	98.16
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.16
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.16
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.15
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.15
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.12
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.12
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK08291	330	ectoine utilization protein EutC; Validated	98.11
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.09
PRK11579	346	putative oxidoreductase; Provisional	98.07
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.07
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	98.06
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.05
PRK07589	346	ornithine cyclodeaminase; Validated	98.04
PRK06223	307	malate dehydrogenase; Reviewed	98.02
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.02
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.01
PTZ00117	319	malate dehydrogenase; Provisional	98.0
PRK06199	379	ornithine cyclodeaminase; Validated	98.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.98
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.97
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.95
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.95
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.92
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.92
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.91
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.9
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.89
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.88
PRK10206	344	putative oxidoreductase; Provisional	97.87
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.86
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.86
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.84
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.84
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.84
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.82
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.81
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.79
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.76
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK06349	426	homoserine dehydrogenase; Provisional	97.76
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.75
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.74
PRK04148	134	hypothetical protein; Provisional	97.74
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.74
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.73
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.72
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.71
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.7
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.65
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.65
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.64
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.62
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.61
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.59
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.58
PRK14982	340	acyl-ACP reductase; Provisional	97.57
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	97.57
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.56
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.56
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.55
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.54
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.54
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.54
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.53
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.52
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.51
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.51
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.47
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.47
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.46
COG2910	211	Putative NADH-flavin reductase [General function p	97.45
PRK09496	453	trkA potassium transporter peripheral membrane com	97.45
PRK10669	558	putative cation:proton antiport protein; Provision	97.44
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.43
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.42
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.41
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.41
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.4
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.4
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.39
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.39
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.37
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.37
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.36
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.35
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.34
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.34
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.34
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.32
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.31
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.31
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.3
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.3
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.29
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.29
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.28
PLN02602	350	lactate dehydrogenase	97.27
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.27
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.27
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.27
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.26
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.26
PRK06270	341	homoserine dehydrogenase; Provisional	97.26
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PF10728	132	DUF2520: Domain of unknown function (DUF2520); Int	97.24
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.22
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.22
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.22
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.21
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.2
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.2
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.18
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.17
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.15
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.12
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.11
PRK09414	445	glutamate dehydrogenase; Provisional	97.11
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.11
PRK05086	312	malate dehydrogenase; Provisional	97.1
PLN02477	410	glutamate dehydrogenase	97.1
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
PRK06392	326	homoserine dehydrogenase; Provisional	97.09
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.06
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.06
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.04
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.04
PRK08374	336	homoserine dehydrogenase; Provisional	97.03
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.02
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.99
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.96
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	96.96
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.96
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.96
PF00393	291	6PGD: 6-phosphogluconate dehydrogenase, C-terminal	96.93
PLN02383	344	aspartate semialdehyde dehydrogenase	96.93
PLN00106	323	malate dehydrogenase	96.93
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	96.92
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.92
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.91
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.89
CHL00194	317	ycf39 Ycf39; Provisional	96.88
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.88
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.86
PRK05442	326	malate dehydrogenase; Provisional	96.83
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.78
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.78
PRK15076	431	alpha-galactosidase; Provisional	96.77
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.77
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.77
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.76
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.73
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.71
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.68
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.68
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.66
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.65
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.64
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.63
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.62
PRK09496	453	trkA potassium transporter peripheral membrane com	96.62
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.61
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.61
PRK14030	445	glutamate dehydrogenase; Provisional	96.6
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.59
COG2344	211	AT-rich DNA-binding protein [General function pred	96.58
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.56
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.55
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.53
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.49
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.47
PRK14031	444	glutamate dehydrogenase; Provisional	96.47
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.44
PTZ00325	321	malate dehydrogenase; Provisional	96.42
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.42
PRK08328	231	hypothetical protein; Provisional	96.38
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.37
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.35
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	96.34
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.34
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.32
PF08546	125	ApbA_C: Ketopantoate reductase PanE/ApbA C termina	96.31
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.31
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.3
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	96.3
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.29
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.29
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.28
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.27
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.25
PRK06153	393	hypothetical protein; Provisional	96.25
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.22
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.18
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.18
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.17
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.13
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	96.08
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.06
PRK08265	261	short chain dehydrogenase; Provisional	96.04
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.03
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.03
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	96.02
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.98
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.97
PRK08223	287	hypothetical protein; Validated	95.93
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	95.93
PLN03209	576	translocon at the inner envelope of chloroplast su	95.93
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.92
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.9
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.88
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.86
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.86
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.85
PRK05866	293	short chain dehydrogenase; Provisional	95.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.84
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.82
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.82
PRK07774	250	short chain dehydrogenase; Provisional	95.81
PRK12939	250	short chain dehydrogenase; Provisional	95.81
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.8
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.79
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.79
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.79
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.75
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.75
PRK06139	330	short chain dehydrogenase; Provisional	95.74
PRK07478	254	short chain dehydrogenase; Provisional	95.73
PRK05867	253	short chain dehydrogenase; Provisional	95.71
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.7
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.69
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.69
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.67
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.66
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.66
PRK07576	264	short chain dehydrogenase; Provisional	95.62
PRK07454	241	short chain dehydrogenase; Provisional	95.62
PRK07411	390	hypothetical protein; Validated	95.56
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.55
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.54
PLN02427	386	UDP-apiose/xylose synthase	95.54
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.54
PRK08589	272	short chain dehydrogenase; Validated	95.53
PRK05876	275	short chain dehydrogenase; Provisional	95.53
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.53
PRK05872	296	short chain dehydrogenase; Provisional	95.52
PRK08862	227	short chain dehydrogenase; Provisional	95.51
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.5
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.5
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.5
PRK07109	334	short chain dehydrogenase; Provisional	95.49
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.48
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.48
PRK06182	273	short chain dehydrogenase; Validated	95.47
PRK07890	258	short chain dehydrogenase; Provisional	95.47
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.46
PRK07060	245	short chain dehydrogenase; Provisional	95.45
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	95.43
PRK07326	237	short chain dehydrogenase; Provisional	95.43
COG5322	351	Predicted dehydrogenase [General function predicti	95.43
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.42
PRK06057	255	short chain dehydrogenase; Provisional	95.4
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.4
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	95.39
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.39
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.38
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.38
PRK10538	248	malonic semialdehyde reductase; Provisional	95.35
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.33
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.33
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.32
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.31
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.29
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	95.27
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.26
PRK12828	239	short chain dehydrogenase; Provisional	95.25
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.24
PRK06398	258	aldose dehydrogenase; Validated	95.24
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.23
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.22
PRK06197	306	short chain dehydrogenase; Provisional	95.21
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	95.21
PRK07067	257	sorbitol dehydrogenase; Provisional	95.2
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.19
PRK07825	273	short chain dehydrogenase; Provisional	95.19
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.19
PRK06194	287	hypothetical protein; Provisional	95.17
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.17
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.16
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.15
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.14
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.14
PRK07814	263	short chain dehydrogenase; Provisional	95.14
PLN02780	320	ketoreductase/ oxidoreductase	95.13
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.13
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.11
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	95.09
PRK07877	722	hypothetical protein; Provisional	95.08
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.07
PRK09186	256	flagellin modification protein A; Provisional	95.07
PLN02214	342	cinnamoyl-CoA reductase	95.05
PLN00198	338	anthocyanidin reductase; Provisional	95.04
PRK07035	252	short chain dehydrogenase; Provisional	95.04
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.03

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=9.6e-51  Score=360.69  Aligned_cols=285  Identities=40%  Similarity=0.647  Sum_probs=277.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ++|+|||+|.||..+|++|.+.|++|.+|||++++ .+.+.+.|.....++.|+++++|+||+++|.+++++.++++...
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            47999999999999999999999999999999998 66666779999999999999999999999999999999998788


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +++.+++|+++||+|+.+|...+.+.+.++..|..++|+|+++++.....++++++++|+++.+++++++|+.+|.++++
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~  160 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH  160 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHH
Q 018303          230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD  309 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  309 (358)
                      +|+.|.++..|+++|.+....++++.|++.++++.|+|++.++++++.+.+.||+++++.+++.+++|+|+|.++.+.||
T Consensus       161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD  240 (286)
T COG2084         161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD  240 (286)
T ss_pred             ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      ++++.+.+++.++++|+...+.+++..+.+.|++++|++++++.|+
T Consensus       241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~  286 (286)
T COG2084         241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE  286 (286)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence            9999999999999999999999999999999999999999999874

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=4.4e-47  Score=329.96  Aligned_cols=291  Identities=43%  Similarity=0.700  Sum_probs=282.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ..+.++||+||+|.||..++..|.+.||+|++|||+.++.+.+++.|.....++.|+.+.||+||.++|.+.+.++++++
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence            45567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC
Q 018303          147 KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK  225 (358)
Q Consensus       147 ~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~  225 (358)
                      +...+..++++... ||.|+.+|....++.+++...+..++|+|+.|+...++.+.++++.+||++.+++..++|+.+|+
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk  191 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGK  191 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcc
Confidence            88899999999877 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhh
Q 018303          226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH  305 (358)
Q Consensus       226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  305 (358)
                      +++++|..|.+...|+++|.+.+..+..++|++.++++.|+|...+.++++.+...|+++.+..|.+.+++|.|+|....
T Consensus       192 ~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~  271 (327)
T KOG0409|consen  192 NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKL  271 (327)
T ss_pred             eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       306 ~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      +.||++++.+.++..+.|+|+...+.++++.....|+++.|++.+++.++.+
T Consensus       272 m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~  323 (327)
T KOG0409|consen  272 MVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRL  323 (327)
T ss_pred             HHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999888764

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=1.4e-44  Score=329.53  Aligned_cols=285  Identities=32%  Similarity=0.542  Sum_probs=268.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|.....++.++++++|+|++|+|.+.+++.++++...+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            4799999999999999999999999999999874 566666788778899999999999999999888999998654456


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.+++|+++||+|+..|...+++.+.+.+.|+.|+++|+.+++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~  159 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV  159 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence            77788999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      |+.|+++..|+++|.+....+.++.|++.++++.|+|++.+.+++..+.+.|++++.+.+.+..++|.++|+++.+.||+
T Consensus       160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl  239 (292)
T PRK15059        160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL  239 (292)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +++.+++++.|+++|+.+++.++++.+.+.|+++.|++++++++++
T Consensus       240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~  285 (292)
T PRK15059        240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL  285 (292)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-44  Score=326.19  Aligned_cols=286  Identities=29%  Similarity=0.477  Sum_probs=268.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      ++|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.+.....++.++++++|+|++|+|.+..++.++++...+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            48999999999999999999999999999999999888888888778899999999999999999888899998654567


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      +..+++|.++||+|++.|...+.+.+.+.++++.|+++|+.+.+.....+.+.++.+|+++.+++++++|+.+|.+++++
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~  161 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA  161 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence            77789999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-ccccCCCCCCCchhhHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD  309 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  309 (358)
                      |+.|.+...|+++|.+......+++|++.++++.|+|++.+.+++..+...++.+..+.+ .+..++|.++|+++.+.||
T Consensus       162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD  241 (296)
T PRK15461        162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD  241 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence            999999999999999999999999999999999999999999999988777787776654 7888999999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++++.+++++.|+++|+.+++.++++.+.++|+++.|++++++.+++
T Consensus       242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~  288 (296)
T PRK15461        242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV  288 (296)
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=100.00  E-value=2.7e-42  Score=316.17  Aligned_cols=285  Identities=32%  Similarity=0.570  Sum_probs=267.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccccc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA  151 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~  151 (358)
                      +|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|.....+..+++++||+|++|+|.+.+++.++++...+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            49999999999999999999999999999999888888887877778899999999999999998888998876444566


Q ss_pred             ccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeC
Q 018303          152 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG  231 (358)
Q Consensus       152 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g  231 (358)
                      +.+++++++||+|+..+.+.+++.+.+++.+++++++|+++.+.....+.+.++++|+++.++.++++++.+|.+++++|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g  160 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG  160 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence            77899999999999999999999999999999999999999887777788889999999999999999999999999999


Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHH
Q 018303          232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR  311 (358)
Q Consensus       232 ~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  311 (358)
                      +.|.+...|+++|.+....+.+++|++.++++.|++++++.+++..+.+.+++++.+.+.+..++|.++|.++.+.||+.
T Consensus       161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~  240 (291)
T TIGR01505       161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN  240 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998889999998888999999999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       312 ~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++.+++++.|+++|+.+++.++++.+.++|+++.|++++++++++
T Consensus       241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~  285 (291)
T TIGR01505       241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL  285 (291)
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999876

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=6.3e-42  Score=314.69  Aligned_cols=286  Identities=32%  Similarity=0.554  Sum_probs=268.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|||||+|.||..+|+.+...|++|.+|||++++.+.+.+.+...+.++++++++||+|++|+|.+.+++.++++..++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            58999999999999999999999999999999988887777788777889999999999999999888999888554557


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.++++++++|+|+..+...+++.+.+.+.+++|+++|++++++....+.+.++++|+++.++.+.++++.+|.+++++
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~  162 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  162 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence            77889999999999999999999999999999999999999998887888888999999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      |+.|.++..|+++|.+....+++++|++.++++.|++++++.+.+..+.+.|++++.+.+.+..++|.++|+++...||+
T Consensus       163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl  242 (296)
T PRK11559        163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  242 (296)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999888889889999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +++++++++.|+++|+.+++.+.++.+.+.|+++.|++++++++++
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  288 (296)
T PRK11559        243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK  288 (296)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=100.00  E-value=9.6e-42  Score=311.68  Aligned_cols=280  Identities=34%  Similarity=0.514  Sum_probs=261.9

Q ss_pred             EEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccC
Q 018303           75 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM  154 (358)
Q Consensus        75 IIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l  154 (358)
                      |||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|.....++.++++++|+|++|+|.+.+++.++++..++.+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999999988888888888788999999999999999998788899886656777788


Q ss_pred             CCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcC
Q 018303          155 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG  234 (358)
Q Consensus       155 ~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g  234 (358)
                      ++|+++||+|+..+...+.+.+.+.+.|+.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++|+.|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g  160 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG  160 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-------ccccCCCCCCCchhhHH
Q 018303          235 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFPLKHQQ  307 (358)
Q Consensus       235 ~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~  307 (358)
                      .++..|+++|.+....+.+++|++.++++.|+|++.+.+++..+.+.+|++..+.+       .+..++|.++|.+..+.
T Consensus       161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  240 (288)
T TIGR01692       161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML  240 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence            99999999999999999999999999999999999999999998888887775544       23568999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018303          308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL  354 (358)
Q Consensus       308 kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~  354 (358)
                      ||++++.+++++.|+++|+.+++.++++++.++|+++.|++++++.+
T Consensus       241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~  287 (288)
T TIGR01692       241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL  287 (288)
T ss_pred             hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence            99999999999999999999999999999999999999999999876

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=3.1e-40  Score=350.20  Aligned_cols=286  Identities=21%  Similarity=0.360  Sum_probs=275.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      .+|||||+|.||..||++|.+.|++|.+|||++++.+.+.+.|...++++.|++++||+||+|+|.+.+++.++++...+
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~   84 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA   84 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence            58999999999999999999999999999999999999998899889999999999999999999999999999877788


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcC--CeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeE
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF  228 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~  228 (358)
                      ++.+++|+++||+|+..|...+++.+.+.++|  +.|+++|++++++.+..+.+.++++|+++.+++++++|+.+|.+++
T Consensus        85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~  164 (1378)
T PLN02858         85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY  164 (1378)
T ss_pred             HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence            88899999999999999999999999999998  8999999999999999999999999999999999999999999988


Q ss_pred             Ee-CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHH
Q 018303          229 YL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ  307 (358)
Q Consensus       229 ~~-g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  307 (358)
                      ++ |+.|++...|+++|.+.+..+.+++|++.++++.|++++.+++++..+.+.||+++.+.+.+..++|.++|.++.+.
T Consensus       165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~  244 (1378)
T PLN02858        165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV  244 (1378)
T ss_pred             EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence            65 89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       308 kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ||++++.+++++.|+++|+.+++.+++..+.+.|+++.|++++++.+++
T Consensus       245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~  293 (1378)
T PLN02858        245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK  293 (1378)
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998875

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=6.2e-39  Score=340.36  Aligned_cols=288  Identities=26%  Similarity=0.394  Sum_probs=273.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      ..++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|.....++.+++++||+|++|+|.+.+++.+++++.
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            34789999999999999999999999999999999988888888877788999999999999999999999999997766


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHh--cCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCC
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~  226 (358)
                      .+++.+++|+++||+|+..|...+++.+.+.+  +++.|+++|+++++..+..+.+.++++|+++.+++++++|+.+|.+
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~  482 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK  482 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence            77888999999999999999999999999998  8999999999999999999999999999999999999999999999


Q ss_pred             eEEe-CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhh
Q 018303          227 RFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH  305 (358)
Q Consensus       227 ~~~~-g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  305 (358)
                      ++++ |+.|.++..|+++|.+....+++++|++.++++.|+|++.+.+++..+.+.||++..+.+.+..++|.++|+++.
T Consensus       483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l  562 (1378)
T PLN02858        483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDI  562 (1378)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHH
Confidence            8874 679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       306 ~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +.||++++.+.+++.|+++|+.+++.+++..+.+.|+++.|++++++++++
T Consensus       563 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~  613 (1378)
T PLN02858        563 FVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET  613 (1378)
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=1.6e-37  Score=285.00  Aligned_cols=279  Identities=21%  Similarity=0.300  Sum_probs=253.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+|||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.|.....++++++++   +|+|++|+|.+..++.++   
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~---   77 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI---   77 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence            47999999999999999999999999999999988888877788888899999876   699999999877999998   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  225 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~--  225 (358)
                      .++.+.+++|+++||+|+..+.+..++.+.+.++++.|+++|+++++.....+. .++++|+++.+++++++|+.+|.  
T Consensus        78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (299)
T PRK12490         78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG  156 (299)
T ss_pred             HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence            678888899999999999999999999999999999999999999998888887 68899999999999999999997  


Q ss_pred             -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-cccchhhhccccccccCCCCCCC
Q 018303          226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAF  301 (358)
Q Consensus       226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~  301 (358)
                       +++++|+.|.+...|+++|.+....+.+++|++.++++.|  +|++.++++++.+ .+.|++++.+.+.+..+++  .+
T Consensus       157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~  234 (299)
T PRK12490        157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA  234 (299)
T ss_pred             CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence             7899999999999999999999999999999999999999  9999999999964 4788999888787765443  34


Q ss_pred             chhhHHHHH---HHHHHHHHhcCCCchHHHHHH-HHHHHHHHCCCCCccHHHHHHHHH
Q 018303          302 PLKHQQKDL---RLALGLAESVSQSTPIAAAAN-ELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       302 ~~~~~~kd~---~~~~~~a~~~gi~~p~~~a~~-~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      .++.+.||.   +++++.+++.|+|+|+..++. .++....++|.+..|.+++.+++-
T Consensus       235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~  292 (299)
T PRK12490        235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG  292 (299)
T ss_pred             hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence            678899998   799999999999999999995 777788878888999999988764

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=5e-37  Score=294.39  Aligned_cols=268  Identities=21%  Similarity=0.279  Sum_probs=241.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCc---cCCCHHHHhhc---CCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivi~~vp~~  137 (358)
                      ...++|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.    |..   .+.++.|+++.   +|+|++++|.+
T Consensus         4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~   83 (493)
T PLN02350          4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG   83 (493)
T ss_pred             CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence            334589999999999999999999999999999999998887653    433   56789999876   99999999999


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHH
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVA  217 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~  217 (358)
                      ..++.++   ..+++.+++|+++||+++..+.+...+.+.+.++|++|+++|++|++..+..++ .+++||+++++++++
T Consensus        84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~  159 (493)
T PLN02350         84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE  159 (493)
T ss_pred             HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence            9999999   778889999999999999999999999999999999999999999999999998 789999999999999


Q ss_pred             HHHHHhcC------CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhhccccchhhhc
Q 018303          218 PLLDIMGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEV---VSQGAISAPMYSL  287 (358)
Q Consensus       218 ~ll~~~g~------~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~~~~~s~~~~~  287 (358)
                      ++|+.++.      +++++|+.|+++.+|+++|.+.+..+++++|++.++++ .|++++.+.++   ++.+.+.|++++.
T Consensus       160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei  239 (493)
T PLN02350        160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI  239 (493)
T ss_pred             HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence            99999985      48999999999999999999999999999999999998 59999999988   4567788999998


Q ss_pred             cccccccCC-CCCCCchhhHHHHHH------HHHHHHHhcCCCchH-HHHHHHHHHHHHH
Q 018303          288 KGPSMIESL-YPTAFPLKHQQKDLR------LALGLAESVSQSTPI-AAAANELYKVAKS  339 (358)
Q Consensus       288 ~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~gi~~p~-~~a~~~~~~~a~~  339 (358)
                      +.+.+..++ +.++|.++.+.||++      +..+.+.++|+|+|+ .+++.+.+.+...
T Consensus       240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k  299 (493)
T PLN02350        240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK  299 (493)
T ss_pred             HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence            888777664 777899999999999      999999999999999 7777766655543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=2.9e-35  Score=270.49  Aligned_cols=278  Identities=23%  Similarity=0.331  Sum_probs=246.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+|||||+|.||+.+|+.|.+.|++|.+|||++++.+.+.+.|+....+++|+++.   +|+|++++|....++.++   
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~---   77 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI---   77 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence            48999999999999999999999999999999998888888888888899998876   699999999877889998   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  225 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~--  225 (358)
                      ..+.+.+++|.++||++++.+....++.+.+.+.|+.|+|+|+.+++.....+. .++++|+++.+++++++|+.++.  
T Consensus        78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~  156 (301)
T PRK09599         78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA  156 (301)
T ss_pred             HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence            677888999999999999999999999999999999999999999998888885 78899999999999999999998  


Q ss_pred             --CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-ccchhhhccccccccCCCCCC
Q 018303          226 --SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTA  300 (358)
Q Consensus       226 --~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~  300 (358)
                        +++++|+.|++...|+++|.+....+.++.|++.++++  .|+|++.+.++++.+. ..|++++...+.+.++   +.
T Consensus       157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~  233 (301)
T PRK09599        157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PK  233 (301)
T ss_pred             cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CC
Confidence              89999999999999999999999999999999999999  9999999999999864 6888888877766443   22


Q ss_pred             Cc-hhhHHHH---HHHHHHHHHhcCCCchHHHHH-HHHHHHHHHCCCCCccHHHHHHHHH
Q 018303          301 FP-LKHQQKD---LRLALGLAESVSQSTPIAAAA-NELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       301 ~~-~~~~~kd---~~~~~~~a~~~gi~~p~~~a~-~~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      +. +....||   .+++++.+.+.++++|.+.++ ...+....+.|.+..|.+++.+++-
T Consensus       234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg  293 (301)
T PRK09599        234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG  293 (301)
T ss_pred             HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence            22 3334555   588999999999999999994 4558888888999999999988763

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=2.8e-32  Score=250.03  Aligned_cols=278  Identities=22%  Similarity=0.273  Sum_probs=238.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh---hcCCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+|||||+|.||..+++.|.+.|++|.+|||++++.+.+.+.+.....+++++.   +++|+|++++|.. .++.++   
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~---   76 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL---   76 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence            489999999999999999999999999999999998888887776667777754   4589999999866 999999   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  225 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~--  225 (358)
                      +++.+.+++|.++||++++.+.+...+.+.+.+.+++|+++|+++++.....+ +.++++|+++.++.++++|+.++.  
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~  155 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE  155 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence            78888899999999999999999999999999999999999999999888888 578999999999999999999986  


Q ss_pred             -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-ccchhhhccccccccCCCCCCC
Q 018303          226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF  301 (358)
Q Consensus       226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~  301 (358)
                       .++++|+.|+++..|++.|.+....+.+++|++.++++.  |+|++++.++++.+. ..|++++...+.+.+++..+.+
T Consensus       156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~  235 (298)
T TIGR00872       156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF  235 (298)
T ss_pred             CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence             589999999999999999999999999999999999997  579999999999875 5889999877777666554444


Q ss_pred             chh-hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          302 PLK-HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       302 ~~~-~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ... ...+|.++++..+.+.|+|+|.+.+.  ++.+..... .+.-...+++..|+
T Consensus       236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~  288 (298)
T TIGR00872       236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRK  288 (298)
T ss_pred             HHHHHhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHH
Confidence            323 35677799999999999999999984  555555432 22345677777765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-31  Score=254.41  Aligned_cols=257  Identities=19%  Similarity=0.241  Sum_probs=221.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----C--CccCCCHHHHhh---cCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivi~~vp~~~~~~  141 (358)
                      .+|||||+|.||+.+|++|.+.|++|.+|||++++.+.+.+.    |  +..+.+++|+++   ++|+|++++|.+..++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999999988877653    4  345779999986   4899999999999999


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHH
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD  221 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~  221 (358)
                      .++   +++.+.+++|+++||++++.+.+.....+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|+
T Consensus        82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~  157 (470)
T PTZ00142         82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE  157 (470)
T ss_pred             HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence            999   788899999999999999999999999999999999999999999999999998 7999999999999999999


Q ss_pred             HhcCC------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccccchhhhccccc
Q 018303          222 IMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVVS---QGAISAPMYSLKGPS  291 (358)
Q Consensus       222 ~~g~~------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~~---~~~~~s~~~~~~~~~  291 (358)
                      .++.+      +.++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++.   .+...|++++.....
T Consensus       158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~  237 (470)
T PTZ00142        158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI  237 (470)
T ss_pred             HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            99987      789999999999999999999999999999999998 79999999988884   667788888876555


Q ss_pred             cccCCCCC-CCchhhH------HHHHHHHHHHHHhcCCCchHHHHHH
Q 018303          292 MIESLYPT-AFPLKHQ------QKDLRLALGLAESVSQSTPIAAAAN  331 (358)
Q Consensus       292 ~~~~~~~~-~~~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~~  331 (358)
                      +.+.|-.. +..++..      ...-++.++.|-++|+|.|++.++.
T Consensus       238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~  284 (470)
T PTZ00142        238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV  284 (470)
T ss_pred             hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence            54443211 1222221      1223688899999999999987653

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.97  E-value=1.8e-30  Score=249.21  Aligned_cols=255  Identities=19%  Similarity=0.239  Sum_probs=219.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHhh---cCCEEEEeeCChhhHhhh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDV  143 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~~  143 (358)
                      .|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.     ++....++.++++   .+|+|++++|.+..++.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999999998887764     2456678888764   689999999988999999


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHh
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM  223 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~  223 (358)
                      +   +++.+.+++|++|||+++..+.+.....+.+.+++++|+++|+++++..+..++ .++++|+++++++++++|+.+
T Consensus        81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i  156 (467)
T TIGR00873        81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI  156 (467)
T ss_pred             H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence            9   788888999999999999999999899999999999999999999999999998 788999999999999999999


Q ss_pred             cCC------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhccccccc
Q 018303          224 GKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMI  293 (358)
Q Consensus       224 g~~------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~  293 (358)
                      +.+      ++++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++   +.+.+.|++++...+.+.
T Consensus       157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~  236 (467)
T TIGR00873       157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK  236 (467)
T ss_pred             hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence            876      489999999999999999999999999999999985 7999999999988   566778899988777666


Q ss_pred             cCCCCCCCchhhH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018303          294 ESLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       294 ~~~~~~~~~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~  330 (358)
                      +.+-..+.-++..      ...-.+.++.+-++|+|.|++.+.
T Consensus       237 ~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a  279 (467)
T TIGR00873       237 KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES  279 (467)
T ss_pred             ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence            6443211111111      222368889999999999997755

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.97  E-value=4.3e-29  Score=238.73  Aligned_cols=246  Identities=20%  Similarity=0.242  Sum_probs=218.6

Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhcccccccc
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS  152 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~~~~~~  152 (358)
                      ||..||++|.+.|++|.+|||++++.+.+.+.     ++..+.++.|+++.   +|+|++++|....++.++   .++++
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~   77 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP   77 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence            89999999999999999999999999888763     47788899999875   899999999999999999   78889


Q ss_pred             cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCe-----
Q 018303          153 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-----  227 (358)
Q Consensus       153 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~-----  227 (358)
                      .+.+|.++||+++..+.+.....+.+.++|++|+++|++|++..+..|+ .+++||++++++.++++|+.++.++     
T Consensus        78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~  156 (459)
T PRK09287         78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP  156 (459)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence            9999999999999999999999999999999999999999999999998 7899999999999999999999876     


Q ss_pred             --EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhccccccccCCCCCCC
Q 018303          228 --FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAF  301 (358)
Q Consensus       228 --~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~  301 (358)
                        .++|+.|+++.+|+++|.+.+..+++++|++.+++ +.|++++++.+++   +.+...|++++...+.+..+++..+.
T Consensus       157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~  236 (459)
T PRK09287        157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK  236 (459)
T ss_pred             ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence              89999999999999999999999999999999999 5899999999888   46778899999888888887774332


Q ss_pred             -chhhH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018303          302 -PLKHQ------QKDLRLALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       302 -~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~  330 (358)
                       -++..      ...-.+.+..|-++|+|+|++...
T Consensus       237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A  272 (459)
T PRK09287        237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA  272 (459)
T ss_pred             cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence             22221      122368889999999999987654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.97  E-value=1e-28  Score=236.61  Aligned_cols=255  Identities=18%  Similarity=0.172  Sum_probs=207.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.||..+|..|+..|++|++||+++++.+.+..                   .| +...+++.++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            48999999999999999999999999999999887766543                   12 45566888889999999


Q ss_pred             EEeeCChhh---------HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCe-EecCCCCCCCCcCC
Q 018303          131 FAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-FLEAPVSGSKKPAE  198 (358)
Q Consensus       131 i~~vp~~~~---------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~-~~~~~~~~~~~~~~  198 (358)
                      |+|+|.+..         +...+   ..+.+.+++++++|++|+..|...+.+...+.+.  +.. +.+.++.+.|....
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence            999996643         55665   6677788999999999999998888886544333  322 33444444444444


Q ss_pred             CCce--------EEEecCCHhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303          199 DGQL--------IFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  269 (358)
Q Consensus       199 ~~~~--------~~~~~g~~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  269 (358)
                      .+..        .++++++++..++++++++.++ ..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|++
T Consensus       158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~  237 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY  237 (411)
T ss_pred             CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            4443        5777889999999999999998 688899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          270 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      ++.+++...           +++....+.||+  ....+.||+.++.+.+++.|+++|+.++++++.+...+
T Consensus       238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~  298 (411)
T TIGR03026       238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPD  298 (411)
T ss_pred             HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHH
Confidence            999988753           345556677765  45569999999999999999999999999888766554

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.96  E-value=6e-30  Score=234.09  Aligned_cols=177  Identities=18%  Similarity=0.169  Sum_probs=154.6

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCC-CCCcccccccccccCCCcCCCCCCeEEEEcCCh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEDELPGRIGFLGMGI   80 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~   80 (358)
                      ++.-+|+|+++  ++||++++|+|++.|++....+.+|+|.|.... ...+.+.            +++++++||||+|+
T Consensus        91 ~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~------------~l~gktvGIiG~Gr  156 (324)
T COG1052          91 TVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGF------------DLRGKTLGIIGLGR  156 (324)
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCccccccc------------CCCCCEEEEECCCH
Confidence            46677899999  999999999999999999999999999998763 2222222            78899999999999


Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  160 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v  160 (358)
                      ||+++|++++.+|++|.+|+|++. .+...+.+..+.+ ++|++++||+|++++|.+++|++++  +++.++.||+|+++
T Consensus       157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga~l  232 (324)
T COG1052         157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGAIL  232 (324)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCeEE
Confidence            999999999999999999999875 2322333455554 9999999999999999999999999  89999999999999


Q ss_pred             EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ||++||..+|++++.++|+++.+.....+++..++.
T Consensus       233 VNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~  268 (324)
T COG1052         233 VNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA  268 (324)
T ss_pred             EECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence            999999999999999999999888888888877765

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=8.6e-28  Score=202.34  Aligned_cols=278  Identities=23%  Similarity=0.326  Sum_probs=227.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh---cCCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+||.||+|+||..+.+++...||+|.+||++++.++.+...++....++++++.   ...+|.+.+|....|..++   
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi---   77 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI---   77 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence            5799999999999999999999999999999999999999989888889888764   4899999999888999999   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK--  225 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~--  225 (358)
                      +++.+.|.+|.+|||-++..-.+.....+.+.+++++|+|+...++......+- .++++|++++++.+.++|+.+..  
T Consensus        78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge  156 (300)
T COG1023          78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE  156 (300)
T ss_pred             HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence            899999999999999999999999999999999999999999999998887775 58899999999999999999865  


Q ss_pred             -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-ccchhhhccccccccC-CCCCC
Q 018303          226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-LYPTA  300 (358)
Q Consensus       226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~~  300 (358)
                       -..++|+.|+++.+|++.|.+.+.++++++|.+.++++..  +|.+.+.+.++.++ ..||+++.....+.+. +...-
T Consensus       157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~  236 (300)
T COG1023         157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI  236 (300)
T ss_pred             CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHh
Confidence             5779999999999999999999999999999999998855  67889999999875 4678877544333221 11000


Q ss_pred             CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHH-HHHHHHHh
Q 018303          301 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFS-AVIEALKA  356 (358)
Q Consensus       301 ~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~-~~~~~~~~  356 (358)
                      ...-.-..+-++-++.+-++|+|.|++...  +..+-+++  .+++|+ +++.+++.
T Consensus       237 ~g~v~dSGEGrWTv~~aldlgvpaPVia~a--l~~Rf~S~--~~d~f~~kvlaalR~  289 (300)
T COG1023         237 SGRVSDSGEGRWTVEEALDLGVPAPVIALA--LMMRFRSR--QDDTFAGKVLAALRN  289 (300)
T ss_pred             cCeeccCCCceeehHHHHhcCCCchHHHHH--HHHHHhcc--chhhHHHHHHHHHHH
Confidence            000000111355677788999999998755  55565554  345565 56665554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.95  E-value=9.3e-29  Score=226.51  Aligned_cols=174  Identities=13%  Similarity=0.105  Sum_probs=148.6

Q ss_pred             eccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHH
Q 018303            6 KSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPM   85 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~   85 (358)
                      .|.++..  +++|+++++++++.|+++.+.+.+|+|.|.+.....   .            ++.+++|||||+|+||+.+
T Consensus        95 ap~~na~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g---~------------el~gkTvGIiG~G~IG~~v  157 (324)
T COG0111          95 APGGNAI--SVAELVLALLLALARRIPDADASQRRGEWDRKAFRG---T------------ELAGKTVGIIGLGRIGRAV  157 (324)
T ss_pred             CCCcchH--HHHHHHHHHHHHHhcCchhhHHHHHcCCcccccccc---c------------cccCCEEEEECCCHHHHHH
Confidence            3455545  999999999999999999999999999998722111   1            6788999999999999999


Q ss_pred             HHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303           86 AQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus        86 a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      |++++.+|++|++||+...+. .....+.....++++++++||+|++|+|.+++|++++  +++.++.||+|+++||++|
T Consensus       158 a~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailIN~aR  234 (324)
T COG0111         158 AKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILINAAR  234 (324)
T ss_pred             HHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEEECCC
Confidence            999999999999999954332 2222356667899999999999999999999999999  8999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCC
Q 018303          166 VDGDTSKLINGHIKATGASFLEAPVSGSKKPAED  199 (358)
Q Consensus       166 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  199 (358)
                      |..+++++|.++++++.+.....+++..+|....
T Consensus       235 G~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~  268 (324)
T COG0111         235 GGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD  268 (324)
T ss_pred             cceecHHHHHHHHHcCCcceEEecCCCCCCCCCC
Confidence            9999999999999999888777788877765443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.95  E-value=3.1e-28  Score=203.79  Aligned_cols=162  Identities=38%  Similarity=0.664  Sum_probs=143.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      +++|||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.|+...+++.|+++++|+|++|+|.+.+++.+++++. 
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-   79 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-   79 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence            3689999999999999999999999999999999999999988999999999999999999999999999999995433 


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +++.+++|+++||+++..|....++.+.+.+.++.|+|+|++++++....+.+.++++|+++.+++++++|+.++.++++
T Consensus        80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~  159 (163)
T PF03446_consen   80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH  159 (163)
T ss_dssp             HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999884


Q ss_pred             -eCC
Q 018303          230 -LGD  232 (358)
Q Consensus       230 -~g~  232 (358)
                       +|+
T Consensus       160 ~~G~  163 (163)
T PF03446_consen  160 YVGP  163 (163)
T ss_dssp             E-ES
T ss_pred             eeCc
Confidence             464

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.95  E-value=4.1e-27  Score=219.27  Aligned_cols=270  Identities=16%  Similarity=0.178  Sum_probs=213.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------C------CccCCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .|+|+|||+|.||+.+|..|...|++|.+|+|++++.+.+...        +      +...+++.++++++|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999998877666543        2      3356688888899999999997


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCC-ChhH--HHHHHHHHHh---cCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD  209 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~--~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  209 (358)
                      . ..++.++       +.++++.++|+++++ .+.+  .+.+.+.+.+   .++.+++.|..........+...++.+++
T Consensus        84 ~-~~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~  155 (328)
T PRK14618         84 S-KALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE  155 (328)
T ss_pred             h-HHHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence            4 4666665       446788899999886 4333  4566666655   56677777766554433445667778889


Q ss_pred             HhHHHHHHHHHHHhcCCeEE--------eCC---------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          210 KSLYNTVAPLLDIMGKSRFY--------LGD---------VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~~~~--------~g~---------~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      ++..+.++++|+..+.+++.        .+.         .|.+...|+..|.....+.+++.|+..++++.|+++++++
T Consensus       156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~  235 (328)
T PRK14618        156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY  235 (328)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence            99999999999999988864        332         3666677778888888899999999999999999999999


Q ss_pred             HHHhh----ccccchhhhccc--cccccC---C-CCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018303          273 EVVSQ----GAISAPMYSLKG--PSMIES---L-YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL  342 (358)
Q Consensus       273 ~~~~~----~~~~s~~~~~~~--~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~  342 (358)
                      ++...    +++.|+.++++.  +.+.++   + +.++|.+..+.||++.+.+++++.++++|+.+++++++       .
T Consensus       236 ~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~  308 (328)
T PRK14618        236 GLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R  308 (328)
T ss_pred             cCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence            99776    366788888773  467776   3 56678888999999999999999999999999998888       3


Q ss_pred             CCccHHHHHHHH
Q 018303          343 SDEDFSAVIEAL  354 (358)
Q Consensus       343 ~~~d~~~~~~~~  354 (358)
                      ++.+..++++.+
T Consensus       309 ~~~~~~~~~~~~  320 (328)
T PRK14618        309 GGWDPLAGLRSL  320 (328)
T ss_pred             CCCCHHHHHHHH
Confidence            444556665554

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.95  E-value=7.2e-28  Score=221.72  Aligned_cols=176  Identities=11%  Similarity=0.068  Sum_probs=148.7

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+.+  ++||++++++|+++|+++.+.+.+++|.|.......+.+.            ++.++++||||+|+||
T Consensus        92 V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~------------~L~gktvGIiG~G~IG  157 (323)
T PRK15409         92 LMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGT------------DVHHKTLGIVGMGRIG  157 (323)
T ss_pred             EEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccC------------CCCCCEEEEEcccHHH
Confidence            4555788887  8999999999999999999999999999974321111122            7889999999999999


Q ss_pred             HHHHHHHH-HCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           83 TPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        83 ~~~a~~l~-~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      +.+|++++ .+|++|.+|+++... +.....+... .++++++++||+|++|+|.+++|++++  +++.++.||+|+++|
T Consensus       158 ~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~lI  233 (323)
T PRK15409        158 MALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAIFI  233 (323)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEEE
Confidence            99999998 999999999987532 2222334544 489999999999999999999999999  889999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      |++||..+++++|.++|+++.+.....+++..+|.
T Consensus       234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~  268 (323)
T PRK15409        234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL  268 (323)
T ss_pred             ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence            99999999999999999999888777778776654

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.94  E-value=1.4e-27  Score=219.24  Aligned_cols=176  Identities=13%  Similarity=0.119  Sum_probs=147.7

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+.+  +++|+++++++++.|+++.+.+.+|+|.|.....+...         .....++.+++|||||+|+||
T Consensus        89 v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~---------~~~~~~L~gktvGIiG~G~IG  157 (311)
T PRK08410         89 VKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHI---------SRPLGEIKGKKWGIIGLGTIG  157 (311)
T ss_pred             EEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCcccc---------CccccccCCCEEEEECCCHHH
Confidence            4455788887  89999999999999999999999999999754322110         001227889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||+....    ..+.. ..++++++++||+|++|+|.+++|++++  +++.++.||+|+++||
T Consensus       158 ~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~a~lIN  230 (311)
T PRK08410        158 KRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDGAILIN  230 (311)
T ss_pred             HHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCCeEEEE
Confidence            999999999999999999964321    12333 3589999999999999999999999999  8999999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      ++||..+++++|.++|+++.+. ...+++..+|..
T Consensus       231 ~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~  264 (311)
T PRK08410        231 VGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME  264 (311)
T ss_pred             CCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence            9999999999999999998888 777887776643

>PLN03139 formate dehydrogenase; Provisional

Probab=99.94  E-value=4.6e-27  Score=219.52  Aligned_cols=179  Identities=13%  Similarity=0.086  Sum_probs=152.1

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|...  +++|++++++|++.|++..+.+.+++|.|...... ..+.            ++.+++|||||+|+||
T Consensus       147 V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~-~~~~------------~L~gktVGIVG~G~IG  211 (386)
T PLN03139        147 VAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIA-YRAY------------DLEGKTVGTVGAGRIG  211 (386)
T ss_pred             EEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccccc-CCCc------------CCCCCEEEEEeecHHH
Confidence            4445566666  89999999999999999999999999999743211 1111            7889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|.+||++....+...+.|+....++++++++||+|++++|.+++|++++  +++.++.|++|+++||
T Consensus       212 ~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN  289 (386)
T PLN03139        212 RLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLIVN  289 (386)
T ss_pred             HHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEEEE
Confidence            99999999999999999998654444444566666799999999999999999999999999  7899999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE  198 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  198 (358)
                      ++|+..+++++|.++|+++.+.....+++..+|...
T Consensus       290 ~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~  325 (386)
T PLN03139        290 NARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPK  325 (386)
T ss_pred             CCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCC
Confidence            999999999999999999998888888887766443

>PRK07574 formate dehydrogenase; Provisional

Probab=99.94  E-value=5.3e-27  Score=219.29  Aligned_cols=176  Identities=13%  Similarity=0.076  Sum_probs=148.8

Q ss_pred             eeec-cccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            4 LVKS-SYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         4 ~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      ++|. .+...  +++|++++++|++.|++..+.+.+++|.|....... .+.            ++.+++|||||+|+||
T Consensus       140 V~n~~g~~a~--~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~-~~~------------~L~gktVGIvG~G~IG  204 (385)
T PRK07574        140 VAEVTGSNSI--SVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVS-RSY------------DLEGMTVGIVGAGRIG  204 (385)
T ss_pred             EEcCCCCchH--HHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccc-cce------------ecCCCEEEEECCCHHH
Confidence            3444 44444  899999999999999999999999999997542111 111            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++|+.+|++|.+|||+....+.....++....++++++++||+|++|+|.+++|++++  +++.++.|++|+++||
T Consensus       205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN  282 (385)
T PRK07574        205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN  282 (385)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence            99999999999999999998644333334466666799999999999999999999999999  8899999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+..+++++|.++|+++.+.....+|+..+|.
T Consensus       283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl  316 (385)
T PRK07574        283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA  316 (385)
T ss_pred             CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence            9999999999999999999888777788776654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.94  E-value=7.3e-27  Score=215.07  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=147.0

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|+++++++++.|+++.+.+.+++|.|.....+...         .....++.+++|||||+|+||
T Consensus        92 v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~---------~~~~~~l~gktvgIiG~G~IG  160 (317)
T PRK06487         92 VCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL---------DFPIVELEGKTLGLLGHGELG  160 (317)
T ss_pred             EEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc---------cCcccccCCCEEEEECCCHHH
Confidence            4455788877  89999999999999999999999999999754322110         001127889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|+++... .     ... ..++++++++||+|++|+|.+++|++++  +++.++.||+|+++||
T Consensus       161 ~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~ga~lIN  231 (317)
T PRK06487        161 GAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPGALLIN  231 (317)
T ss_pred             HHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCCeEEEE
Confidence            99999999999999999986432 1     122 3489999999999999999999999999  8999999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      ++||..+++++|.++|+++.+.....+++..+|..
T Consensus       232 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~  266 (317)
T PRK06487        232 TARGGLVDEQALADALRSGHLGGAATDVLSVEPPV  266 (317)
T ss_pred             CCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC
Confidence            99999999999999999998887777887766543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.93  E-value=2.5e-25  Score=207.37  Aligned_cols=272  Identities=18%  Similarity=0.227  Sum_probs=199.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|+|||+|.||..+|..|+..|++|.+|+|+++..+.+...              ++....+++++++++|+|++|+| 
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~-   80 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP-   80 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC-
Confidence            689999999999999999999999999999998877766654              24456678888899999999997 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhc-----CCeEecCCCCCCCCcCCCCceEEEecCCH
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK  210 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  210 (358)
                      +.+++.++   +++.+.+++++++|+++++ .+.....+.+.+.+.     ...++..|..............++.+++.
T Consensus        81 ~~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~  157 (325)
T PRK00094         81 SQALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE  157 (325)
T ss_pred             HHHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence            57888888   7777778899999999744 333333334444332     33455566554332233344555666788


Q ss_pred             hHHHHHHHHHHHhcCCeEEeCCc-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018303          211 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  273 (358)
Q Consensus       211 ~~~~~v~~ll~~~g~~~~~~g~~-----------------g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~  273 (358)
                      +.++.+.++|+..+..+....+.                 |.+...|+..|.+...+..+++|+..++++.|++++.+.+
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~  237 (325)
T PRK00094        158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG  237 (325)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence            99999999999999887766553                 3444467777888888999999999999999999999988


Q ss_pred             HHhhc----cccchhhhccc--cccccCC-C-----CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          274 VVSQG----AISAPMYSLKG--PSMIESL-Y-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       274 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      ....+    ...++..+++.  ..+..+. +     .++ .+..+.||++.+.++++++|+++|+.+++++++       
T Consensus       238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------  309 (325)
T PRK00094        238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------  309 (325)
T ss_pred             ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence            75543    23344444433  2232222 1     112 456779999999999999999999999999887       


Q ss_pred             CCCccHHHHHHHH
Q 018303          342 LSDEDFSAVIEAL  354 (358)
Q Consensus       342 ~~~~d~~~~~~~~  354 (358)
                      .++.+...+++.+
T Consensus       310 ~~~~~~~~~~~~~  322 (325)
T PRK00094        310 YEGKDPREAVEDL  322 (325)
T ss_pred             cCCCCHHHHHHHH
Confidence            4456666666554

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.93  E-value=1.8e-24  Score=206.46  Aligned_cols=255  Identities=14%  Similarity=0.122  Sum_probs=194.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc----------------cCCCHHHHhhcCCEEEE
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTFA  132 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivi~  132 (358)
                      ..|+|||||+|.||..+|..|++ |++|++||+++++.+.+. .|..                ..++..+.+++||++++
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            34799999999999999999887 699999999999988877 3322                22343456889999999


Q ss_pred             eeCCh------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEec------CC--CCCCCCc
Q 018303          133 MLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE------AP--VSGSKKP  196 (358)
Q Consensus       133 ~vp~~------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~------~~--~~~~~~~  196 (358)
                      |||.+      .++..+....+.+.+.+++|+++|+.|+..|...+.+.......  |..+.+      +|  +.++...
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~  162 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK  162 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence            99977      34455654346788889999999999999999888664443332  444333      23  2233222


Q ss_pred             CCCC-ceEEEecCCHhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018303          197 AEDG-QLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV  274 (358)
Q Consensus       197 ~~~~-~~~~~~~g~~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~  274 (358)
                      .... ...++.|++++..+.+.++++.+. ...+.+++++.++..|+++|.+.+..+++++|+..+|++.|+|.+++.+.
T Consensus       163 ~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a  242 (425)
T PRK15182        163 HRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRA  242 (425)
T ss_pred             ccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            2222 233555667888889999999886 45788899999999999999999999999999999999999999999998


Q ss_pred             HhhccccchhhhccccccccCCCCCC-CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          275 VSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       275 ~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      +...    |.       +.  .+.|| +....+.||...+...+++.|..++++++++++.+...
T Consensus       243 ~~~~----~~-------~~--~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~  294 (425)
T PRK15182        243 AGSK----WN-------FL--PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMG  294 (425)
T ss_pred             hcCC----CC-------cc--cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            5432    21       11  13445 55567899999999999999999999999988766543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-26  Score=213.49  Aligned_cols=175  Identities=13%  Similarity=0.096  Sum_probs=146.4

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|+++++++++.|+++.+.+.++++.|.....+...         ..+..++.+++|||||+|+||
T Consensus        91 v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~---------~~~~~~l~gktvgIiG~G~IG  159 (314)
T PRK06932         91 VKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYF---------DYPITDVRGSTLGVFGKGCLG  159 (314)
T ss_pred             EEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCcccccc---------CCcccccCCCEEEEECCCHHH
Confidence            4455788887  89999999999999999999999999999754321110         011227889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|+++...  ..   .. ...++++++++||+|++|+|.+++|++++  +++.++.||+|+++||
T Consensus       160 ~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~ga~lIN  231 (314)
T PRK06932        160 TEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPTAFLIN  231 (314)
T ss_pred             HHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCCeEEEE
Confidence            99999999999999999986421  11   11 13589999999999999999999999999  8999999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++||..+++++|.++|+++.+.....+++..+|.
T Consensus       232 ~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~  265 (314)
T PRK06932        232 TGRGPLVDEQALLDALENGKIAGAALDVLVKEPP  265 (314)
T ss_pred             CCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence            9999999999999999999888777788877654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.93  E-value=7.6e-24  Score=202.22  Aligned_cols=252  Identities=14%  Similarity=0.098  Sum_probs=191.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-CCCHHHH---------------hhcCCEEEEe
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM  133 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivi~~  133 (358)
                      .++|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ..+++++               .++||+|++|
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            36899999999999999999999999999999998888754322211 1123333               2379999999


Q ss_pred             eCCh---------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC--------------eEecCC-
Q 018303          134 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP-  189 (358)
Q Consensus       134 vp~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~--------------~~~~~~-  189 (358)
                      +|.+         ..+...+   ..+.+.+++|++||+.|+..+...+.+...+.+.+.              .++.+| 
T Consensus        83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE  159 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE  159 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence            9976         4666666   778888999999999999999999888887766432              245566 


Q ss_pred             -CCCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018303          190 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD  267 (358)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~  267 (358)
                       +..+........+..+++| +++..+++.++++.++..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|
T Consensus       160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD  239 (415)
T PRK11064        160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN  239 (415)
T ss_pred             ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             2233323233334456677 89999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          268 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       268 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      ++++.+.+......    .     ++  ...+|+....+.||...+.   .+.+...+++++++++.+...
T Consensus       240 ~~~v~~~~~~~~ri----~-----~l--~pG~G~GG~ClpkD~~~L~---~~~~~~~~l~~~a~~~N~~~~  296 (415)
T PRK11064        240 VWELIRLANRHPRV----N-----IL--QPGPGVGGHCIAVDPWFIV---AQNPQQARLIRTAREVNDGKP  296 (415)
T ss_pred             HHHHHHHhccCCCc----c-----cC--CCCCCCCCccccccHHHHH---HhcCCccHHHHHHHHHHHHhH
Confidence            99999988754211    0     11  1123444567888887664   356667888888877665553

>PLN02306 hydroxypyruvate reductase

Probab=99.93  E-value=2.9e-26  Score=214.98  Aligned_cols=177  Identities=12%  Similarity=0.022  Sum_probs=146.7

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|...  +++|++++++|++.|+++.+.+.+++|.|..+......+.            ++.+++|||||+|+||
T Consensus       112 V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~------------~L~gktvGIiG~G~IG  177 (386)
T PLN02306        112 VGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGN------------LLKGQTVGVIGAGRIG  177 (386)
T ss_pred             EEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCc------------CCCCCEEEEECCCHHH
Confidence            4556788777  8999999999999999999999999999964332111112            6888999999999999


Q ss_pred             HHHHHHHH-HCCCcEEEEcCCccch-hhH-HhCC------------CccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           83 TPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        83 ~~~a~~l~-~~g~~V~~~~~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      +.+|+++. .+|++|++||++.+.. ... ...+            .....++++++++||+|++|+|.+++|++++  +
T Consensus       178 ~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li--n  255 (386)
T PLN02306        178 SAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI--N  255 (386)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc--C
Confidence            99999985 8999999999976421 110 0111            1224589999999999999999999999999  8


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++.++.||+|+++||++||..+++++|.++|+++.+.....+++..+|
T Consensus       256 ~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP  303 (386)
T PLN02306        256 KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP  303 (386)
T ss_pred             HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCC
Confidence            999999999999999999999999999999999888877788887775

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.93  E-value=3.1e-26  Score=212.30  Aligned_cols=180  Identities=13%  Similarity=0.063  Sum_probs=148.5

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +..+|+|+..  +++|++++++|++.|+++.+.+.+++|.|......... .       .....++.+++|||||+|+||
T Consensus        93 v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~-------~~~g~~L~gktvgIiG~G~IG  162 (333)
T PRK13243         93 VTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP-L-------MFLGYDVYGKTIGIIGFGRIG  162 (333)
T ss_pred             EEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccc-c-------cccccCCCCCEEEEECcCHHH
Confidence            4455788777  89999999999999999999999999999743110000 0       001127889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|.+|||+++.. .....+... .++++++++||+|++|+|.+++|++++  +++.++.|++|+++||
T Consensus       163 ~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ga~lIN  238 (333)
T PRK13243        163 QAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKPTAILVN  238 (333)
T ss_pred             HHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEEEE
Confidence            999999999999999999986542 222334443 589999999999999999999999999  7889999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+..+++++|.++++++.+.....+++..+|.
T Consensus       239 ~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~  272 (333)
T PRK13243        239 TARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY  272 (333)
T ss_pred             CcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence            9999999999999999999888877788877654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.93  E-value=6.3e-24  Score=195.94  Aligned_cols=265  Identities=13%  Similarity=0.134  Sum_probs=202.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+..           .+.|             +....++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            589999999999999999999999999999998765542           2233             2466788889999


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      ||+|++++|...+.+..++  .++.... ++.+++. ++........+.+.+...+..+.++|+.+...    .+++.++
T Consensus        83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv  154 (308)
T PRK06129         83 ADYVQESAPENLELKRALF--AELDALA-PPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV  154 (308)
T ss_pred             CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence            9999999998776666663  3343334 4444444 44444456678888766677788888864211    1345566


Q ss_pred             c---CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303          207 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  283 (358)
Q Consensus       207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~  283 (358)
                      +   ++++.++.+.++++.+|+++++++..+.+.   ++++.    ..++++|++.++++.|++++++++++..+.+.+|
T Consensus       155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~  227 (308)
T PRK06129        155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW  227 (308)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence            5   689999999999999999999998755453   33443    3467889999999999999999999999888887


Q ss_pred             hhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHH
Q 018303          284 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE  352 (358)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~  352 (358)
                      .+  .+|.+..+.+.++|....+.||..++.+.+++.+.+.|+++...+.+....+.-.+..++..+.+
T Consensus       228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (308)
T PRK06129        228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQA  294 (308)
T ss_pred             cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            77  57878877777888889999999999999999999999887776655555555555555555443

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=99.93  E-value=2.7e-26  Score=202.35  Aligned_cols=175  Identities=13%  Similarity=0.117  Sum_probs=154.2

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      +++..|.|++.  |++|++.++++++.|+++.....+|+|.|.+....+.               ++.+|++||+|+|+|
T Consensus        95 ~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~---------------el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   95 LVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGW---------------ELRGKTLGVLGLGRI  157 (406)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeecceeee---------------EEeccEEEEeecccc
Confidence            46678999999  9999999999999999999999999999987653322               788999999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|+++..+|+.|+.||+-.. .+.....|+... +++|++..||+|.+|+|.+++|++++  +++.++.||+|..+|
T Consensus       158 GseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVriI  233 (406)
T KOG0068|consen  158 GSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVRII  233 (406)
T ss_pred             hHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcEEE
Confidence            99999999999999999997543 244555677765 89999999999999999999999999  889999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      |++||..+|+.+|.+++.++.+.....+++..++..
T Consensus       234 N~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~  269 (406)
T KOG0068|consen  234 NVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK  269 (406)
T ss_pred             EecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence            999999999999999999987776666777766654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.93  E-value=5.5e-26  Score=207.03  Aligned_cols=166  Identities=13%  Similarity=0.143  Sum_probs=141.9

Q ss_pred             eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT   83 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~   83 (358)
                      ++|+.+..  .+++|++++++|++.|+++.+.+.+++|.|.....     +            ++.+++|||||+|+||+
T Consensus        75 ~~~~g~~~--~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~------------~L~gktvgIiG~G~IG~  135 (303)
T PRK06436         75 CSNAGAYS--ISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----K------------LLYNKSLGILGYGGIGR  135 (303)
T ss_pred             EEcCCCCc--HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----C------------CCCCCEEEEECcCHHHH
Confidence            44553333  49999999999999999999999999999975321     1            67889999999999999


Q ss_pred             HHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      .+|++++.+|++|++|||+...      .+.. ...++++++++||+|++|+|.+++|++++  +++.++.|++|+++||
T Consensus       136 ~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~lIN  207 (303)
T PRK06436        136 RVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAIIN  207 (303)
T ss_pred             HHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEEEE
Confidence            9999999999999999997532      1222 24689999999999999999999999999  7889999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.++++++|.++++++.+.....+++..+|.
T Consensus       208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~  241 (303)
T PRK06436        208 VARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI  241 (303)
T ss_pred             CCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence            9999999999999999998787777777776653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.93  E-value=1.2e-26  Score=196.95  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=130.6

Q ss_pred             CccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEc
Q 018303           21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN  100 (358)
Q Consensus        21 ~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~  100 (358)
                      ++++|++.|+++.+.+.++++.|....  ...            ..++.+++|||||+|+||+.+|++++.+|++|++||
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~--~~~------------~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d   66 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRE--RFP------------GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYD   66 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHT--TTT------------BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCc--CCC------------ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEec
Confidence            356777899999999999999991111  111            117888999999999999999999999999999999


Q ss_pred             CCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh
Q 018303          101 RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA  180 (358)
Q Consensus       101 ~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~  180 (358)
                      |+..........+. ...+++|++++||+|++++|.+++|++++  +++.++.|++|+++||++|+..+++++|.+++++
T Consensus        67 ~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~  143 (178)
T PF02826_consen   67 RSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALES  143 (178)
T ss_dssp             SSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred             ccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence            98876543444455 34599999999999999999999999999  8999999999999999999999999999999999


Q ss_pred             cCCeEecCCCCCCCCcC
Q 018303          181 TGASFLEAPVSGSKKPA  197 (358)
Q Consensus       181 ~~~~~~~~~~~~~~~~~  197 (358)
                      +.+.....+++..++..
T Consensus       144 g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen  144 GKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             TSEEEEEESS-SSSSSS
T ss_pred             ccCceEEEECCCCCCCC
Confidence            98887777887776544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.93  E-value=4.8e-26  Score=216.16  Aligned_cols=171  Identities=13%  Similarity=0.071  Sum_probs=147.1

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|+++++++++.|+++.+.+.+++|.|.....   .+.            ++.+++|||||+|+||
T Consensus       101 V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~------------~L~gktvGIiG~G~IG  163 (409)
T PRK11790        101 VFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA---GSF------------EVRGKTLGIVGYGHIG  163 (409)
T ss_pred             EEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCccccccc---Ccc------------cCCCCEEEEECCCHHH
Confidence            3445788887  8999999999999999999999999999975321   111            7888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+++..+|++|.+||+++...    ..++....++++++++||+|++|+|.+++|++++  +++.+..||+|+++||
T Consensus       164 ~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~lIN  237 (409)
T PRK11790        164 TQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAILIN  237 (409)
T ss_pred             HHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEEEE
Confidence            999999999999999999864321    1234455689999999999999999999999999  8899999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++||..+++++|.++|+++.+.....+++..+|.
T Consensus       238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~  271 (409)
T PRK11790        238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK  271 (409)
T ss_pred             CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            9999999999999999999888777787766653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.92  E-value=2.4e-23  Score=196.42  Aligned_cols=249  Identities=16%  Similarity=0.122  Sum_probs=188.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh----------------CCCcc--CCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivi~  132 (358)
                      |+|+|||+|.||..+|..++. |++|++||+++++.+.+.+                .+...  ..+..+++++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            589999999999999987775 9999999999998877654                22222  3346778899999999


Q ss_pred             eeCCh----------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc---CCC
Q 018303          133 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP---AED  199 (358)
Q Consensus       133 ~vp~~----------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~  199 (358)
                      |+|.+          ..++.++   +++.. +++|+++|+.|+.+|...+.+.+.+.+.++.+  .|.+-.+-.   ...
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~  153 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL  153 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence            99976          4556666   56665 68999999999999999999998887655444  444322211   111


Q ss_pred             CceEEEecCCHhHHHHHHHHHHH--hcCCeE-EeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          200 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       200 ~~~~~~~~g~~~~~~~v~~ll~~--~g~~~~-~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      .+..++.|++++..+++.+++..  ++..+. ++++++.++..|++.|.+.+..++.++|+..+|++.|+|.+++.+.+.
T Consensus       154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~  233 (388)
T PRK15057        154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC  233 (388)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence            23367778877778888888854  555444 689999999999999999999999999999999999999999999887


Q ss_pred             hccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          277 QGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       277 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      ...           ++...-+.|  |+....+.||...+...+  .+++++++++++++.+...+
T Consensus       234 ~d~-----------ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~~  285 (388)
T PRK15057        234 LDP-----------RIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRKD  285 (388)
T ss_pred             CCC-----------CCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhHH
Confidence            643           222211123  455677899998886555  56788999998877665544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.92  E-value=5.5e-24  Score=196.33  Aligned_cols=254  Identities=19%  Similarity=0.237  Sum_probs=184.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      +|+|+|||+|+||+.+|+.|...|++|.+|+|+..             .++.++++++|+|++++|. ..++.++   ++
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~   66 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQ   66 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HH
Confidence            47899999999999999999999999999999753             4678889999999999985 6888888   66


Q ss_pred             ccc-cCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCCC--CCCCc-----CCCCceEEEecCCHhHHHHHHHHH
Q 018303          150 AAS-GMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS--GSKKP-----AEDGQLIFLAAGDKSLYNTVAPLL  220 (358)
Q Consensus       150 ~~~-~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~~~~~~~v~~ll  220 (358)
                      +.. .+++++++|+++++ .+.....+.+.+...   +.+.|+.  .++..     .......++++++++..+.++++|
T Consensus        67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll  143 (308)
T PRK14619         67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF  143 (308)
T ss_pred             HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence            654 37889999998874 333333333333221   2233332  22211     122456677888999999999999


Q ss_pred             HHhcCCeEEeCC-cC--hHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303          221 DIMGKSRFYLGD-VG--NGAAM--------------KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  283 (358)
Q Consensus       221 ~~~g~~~~~~g~-~g--~~~~~--------------k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~  283 (358)
                      +..+.+++..++ .|  .+..+              ++..|.....+..++.|+..++++.|++++.++++.  +.+-++
T Consensus       144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~  221 (308)
T PRK14619        144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLL  221 (308)
T ss_pred             CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhh
Confidence            999988887766 22  22233              366788888899999999999999999999998752  323322


Q ss_pred             hhhccccccccCCCCCCCchhhH----------------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccH
Q 018303          284 MYSLKGPSMIESLYPTAFPLKHQ----------------QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDF  347 (358)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~  347 (358)
                      .   ..+.+..+++.+|+.+..+                .||++.+.++++++|+++|+.+++++++.       ++.+.
T Consensus       222 ~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~  291 (308)
T PRK14619        222 A---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITP  291 (308)
T ss_pred             e---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCH
Confidence            2   2234455555555544444                89999999999999999999999998883       44455


Q ss_pred             HHHHHHHH
Q 018303          348 SAVIEALK  355 (358)
Q Consensus       348 ~~~~~~~~  355 (358)
                      ..+++.+-
T Consensus       292 ~~~~~~l~  299 (308)
T PRK14619        292 QQALEELM  299 (308)
T ss_pred             HHHHHHHH
Confidence            55555543

>PLN02928 oxidoreductase family protein

Probab=99.92  E-value=1.6e-25  Score=208.34  Aligned_cols=174  Identities=13%  Similarity=0.021  Sum_probs=144.8

Q ss_pred             eeeeccccc-cccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      +...|+|++ ...+++|+++++++++.|+++.+.+.++++.|....     +.            ++.+++|||||+|+|
T Consensus       108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~-----~~------------~l~gktvGIiG~G~I  170 (347)
T PLN02928        108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPI-----GD------------TLFGKTVFILGYGAI  170 (347)
T ss_pred             EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccccc-----cc------------CCCCCEEEEECCCHH
Confidence            334456653 446899999999999999999999999999996411     11            678899999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhH------------HhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |+.+|++++.+|++|++|||+.......            ..... ...++++++++||+|++|+|.+++|++++  +++
T Consensus       171 G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~~  247 (347)
T PLN02928        171 GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--NDE  247 (347)
T ss_pred             HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CHH
Confidence            9999999999999999999974321111            00112 34689999999999999999999999999  899


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      .++.|++|++|||++||..+++++|.++|+++.+.....+++..+|.
T Consensus       248 ~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~  294 (347)
T PLN02928        248 FLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF  294 (347)
T ss_pred             HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence            99999999999999999999999999999999888777788776654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.92  E-value=2.1e-25  Score=204.45  Aligned_cols=162  Identities=13%  Similarity=0.151  Sum_probs=139.1

Q ss_pred             cCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCC
Q 018303           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      .+++|+++++++++.|+++.+.+.++++.|......                 ++.+++|||||+|+||+.+|+++..+|
T Consensus        97 ~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----------------~l~g~tvgIvG~G~IG~~vA~~l~afG  159 (312)
T PRK15469         97 EQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----------------HREDFTIGILGAGVLGSKVAQSLQTWG  159 (312)
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----------------CcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence            488999999999999999999999999999743211                 566789999999999999999999999


Q ss_pred             CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHH
Q 018303           94 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  173 (358)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  173 (358)
                      ++|.+|+++++.......  .....++++++++||+|++++|.+++|++++  +++.+..|++|+++||++||..+++++
T Consensus       160 ~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~a  235 (312)
T PRK15469        160 FPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDD  235 (312)
T ss_pred             CEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHH
Confidence            999999987654321111  1224589999999999999999999999999  788999999999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCCCc
Q 018303          174 INGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       174 l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      |.++|+++.+.....+++..+|.
T Consensus       236 L~~aL~~g~i~gaalDVf~~EPl  258 (312)
T PRK15469        236 LLAALDSGKVKGAMLDVFSREPL  258 (312)
T ss_pred             HHHHHhcCCeeeEEecCCCCCCC
Confidence            99999999888777788776654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.92  E-value=1.8e-25  Score=206.64  Aligned_cols=172  Identities=12%  Similarity=0.104  Sum_probs=147.1

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++..+|+|+++  +++|+++++++++.|+++.+.+.+++|.|.+...  ..++            ++.+++|||||+|+|
T Consensus        94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~--~~~~------------~l~g~~VgIIG~G~I  157 (330)
T PRK12480         94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE--IMSK------------PVKNMTVAIIGTGRI  157 (330)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc--cCcc------------ccCCCEEEEECCCHH
Confidence            35556899998  8999999999999999999999999997743221  1112            678899999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|++++.+|++|.+||++++.....    .....++++++++||+|++|+|.++++.+++  +++.++.|++|+++|
T Consensus       158 G~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavlI  231 (330)
T PRK12480        158 GAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAILV  231 (330)
T ss_pred             HHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEEE
Confidence            9999999999999999999987543221    2345689999999999999999999999999  788999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      |++||..+++++|.++|+++.+.....+++..+|
T Consensus       232 N~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP  265 (330)
T PRK12480        232 NAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA  265 (330)
T ss_pred             EcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence            9999999999999999999988888888887765

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.92  E-value=3.3e-25  Score=217.28  Aligned_cols=174  Identities=13%  Similarity=0.100  Sum_probs=148.6

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|...  +++|++++++|++.|+++.+.+.+++|.|.....   .+.            ++.+++|||||+|+||
T Consensus        88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~---~g~------------~l~gktvgIiG~G~IG  150 (525)
T TIGR01327        88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAF---MGT------------ELYGKTLGVIGLGRIG  150 (525)
T ss_pred             EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc---Ccc------------ccCCCEEEEECCCHHH
Confidence            3344677777  8999999999999999999999999999975321   111            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++  +++.++.|++|+++||
T Consensus       151 ~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN  227 (525)
T TIGR01327       151 SIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIVN  227 (525)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEEE
Confidence            99999999999999999986332 33344566656789999999999999999999999999  7889999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+..+++++|.++|+++.+.....+++..+|.
T Consensus       228 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  261 (525)
T TIGR01327       228 CARGGIIDEAALYEALEEGHVRAAALDVFEKEPP  261 (525)
T ss_pred             cCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence            9999999999999999999888777777766653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.91  E-value=9.7e-25  Score=213.99  Aligned_cols=172  Identities=14%  Similarity=0.151  Sum_probs=147.2

Q ss_pred             eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT   83 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~   83 (358)
                      ...|+|+..  +++|++++++|++.|+++.+.+.+++|.|.....   .+.            ++.+++|||||+|+||+
T Consensus        91 ~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~---~g~------------~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         91 VNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKF---MGV------------ELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             EeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc---ccc------------ccCCCEEEEECCCHHHH
Confidence            344677776  8999999999999999999999999999975321   112            67889999999999999


Q ss_pred             HHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEc
Q 018303           84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus        84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      .+|++++.+|++|.+||++... +.....++... ++++++++||+|++|+|.+++|++++  +++.++.||+|+++||+
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lIN~  229 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRIINC  229 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEEEC
Confidence            9999999999999999996532 33344566655 89999999999999999999999999  78899999999999999


Q ss_pred             cCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          164 STVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       164 s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      +|+..+++++|.++|+++.+.....+++..+|.
T Consensus       230 aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  262 (526)
T PRK13581        230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPP  262 (526)
T ss_pred             CCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence            999999999999999999887777777766653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.90  E-value=7.6e-24  Score=191.44  Aligned_cols=165  Identities=16%  Similarity=0.110  Sum_probs=144.6

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      ++|++++++++.+.|++...++.+++|+|.......+. .            .+.++||||+|+|+||+.+|++|..||+
T Consensus       120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g-~------------~~~gK~vgilG~G~IG~~ia~rL~~Fg~  186 (336)
T KOG0069|consen  120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLG-Y------------DLEGKTVGILGLGRIGKAIAKRLKPFGC  186 (336)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcccc-c------------cccCCEEEEecCcHHHHHHHHhhhhccc
Confidence            88999999999999999999999999999433323222 2            6888999999999999999999999998


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      .+..+.|++...+...+.+.. ..+.++++.++|+|++|+|++++|++++  +++++.+|++|.++||++||...+++++
T Consensus       187 ~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide~~l  263 (336)
T KOG0069|consen  187 VILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDEEAL  263 (336)
T ss_pred             eeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccHHHH
Confidence            888888987766655554444 4589999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCCC
Q 018303          175 NGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      .++++++.+.-.+.+++..+|
T Consensus       264 ~eaL~sG~i~~aGlDVf~~EP  284 (336)
T KOG0069|consen  264 VEALKSGKIAGAGLDVFEPEP  284 (336)
T ss_pred             HHHHhcCCcccccccccCCCC
Confidence            999999988777778887766

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.90  E-value=5.2e-24  Score=197.57  Aligned_cols=173  Identities=10%  Similarity=0.084  Sum_probs=144.9

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++...|+|+..  +++|+++++++++.|+++.+.+.++++.|.+...  +.++            ++.+++|||||+|+|
T Consensus        94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~--~~~~------------~l~g~~VgIIG~G~I  157 (332)
T PRK08605         94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP--ILSR------------SIKDLKVAVIGTGRI  157 (332)
T ss_pred             EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc--cccc------------eeCCCEEEEECCCHH
Confidence            34556788887  9999999999999999999999999998843221  1112            688899999999999


Q ss_pred             HHHHHHHH-HHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303           82 GTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  160 (358)
Q Consensus        82 G~~~a~~l-~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v  160 (358)
                      |+.+|++| ..+|++|.+||+++...  . ...+....++++++++||+|++|+|.+..++.++  +++.++.|++|+++
T Consensus       158 G~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gail  232 (332)
T PRK08605        158 GLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAVF  232 (332)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcEE
Confidence            99999999 67899999999986532  1 1234455689999999999999999999999988  67788999999999


Q ss_pred             EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ||++|+..++++++.+++.++.+.....+++..++
T Consensus       233 IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep  267 (332)
T PRK08605        233 VNCARGSLVDTKALLDALDNGLIKGAALDTYEFER  267 (332)
T ss_pred             EECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence            99999999999999999999988877777776654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.7e-21  Score=175.57  Aligned_cols=256  Identities=21%  Similarity=0.271  Sum_probs=206.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~vp~~~~~~~  142 (358)
                      ..||+||+|-||+.+|......|++|.+|+|+.++.+.+.+.     .+..+.+++|++   +...-|++.|-....+..
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            469999999999999999999999999999999998887653     345566777764   568888888865566788


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                      ++   +++++.|.+|.++||-++..-.|+..-.+.|.+.|+.|+++.+.|++..+..|+. +|.+|++++.+.+.++|..
T Consensus        84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~  159 (473)
T COG0362          84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK  159 (473)
T ss_pred             HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence            88   8999999999999999999999999999999999999999999999999999985 7899999999999999998


Q ss_pred             hc------CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhcccccc
Q 018303          223 MG------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKGPSM  292 (358)
Q Consensus       223 ~g------~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~---~~~~s~~~~~~~~~~  292 (358)
                      +.      .++.++|+-|+++.+|+++|.+.+.-+++++|+..+++. .|++.+++.+++..   +-..|.+.+....-+
T Consensus       160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL  239 (473)
T COG0362         160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL  239 (473)
T ss_pred             HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            84      356789999999999999999999999999999999988 89999888877764   333444444332222


Q ss_pred             ccCCCCCC-CchhhH-----HHHH-HHHHHHHHhcCCCchHHHHH
Q 018303          293 IESLYPTA-FPLKHQ-----QKDL-RLALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       293 ~~~~~~~~-~~~~~~-----~kd~-~~~~~~a~~~gi~~p~~~a~  330 (358)
                      ...|-..+ .-++.+     +|.+ ++....|-++|+|+|++.+.
T Consensus       240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ea  284 (473)
T COG0362         240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEA  284 (473)
T ss_pred             hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHH
Confidence            22222222 112222     1111 56677888899999886544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.87  E-value=4.5e-21  Score=179.83  Aligned_cols=269  Identities=20%  Similarity=0.253  Sum_probs=184.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----------------cCCCHHHHhhcCCEEEEe
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivi~~  133 (358)
                      |+|+|||+|.||..+|..|++.|++|.+++|++. .+.+.+.|..                 ...+. +.++.+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            6899999999999999999999999999999653 3444444432                 23344 567889999999


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC--C---CCCCCC---cCCCCceEEE
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKK---PAEDGQLIFL  205 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~--~---~~~~~~---~~~~~~~~~~  205 (358)
                      +| +.+...++   +++.+.++++++|+++.++.. ..+.+.+.+...  .++.+  +   +..++.   ....+.+.+ 
T Consensus        81 vk-~~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~-  152 (341)
T PRK08229         81 VK-SAATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI-  152 (341)
T ss_pred             ec-CcchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe-
Confidence            96 56778888   777788889999998876543 334566665442  22222  1   121211   122334332 


Q ss_pred             ecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 018303          206 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--------------------MATFSEGLLHSEKVG  265 (358)
Q Consensus       206 ~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~--------------------~~~~~Ea~~l~~~~G  265 (358)
                       + +.+.++.+.++|+..+.++.+.++++...|.|++.|.+....                    ..++.|+..++++.|
T Consensus       153 -~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G  230 (341)
T PRK08229        153 -E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG  230 (341)
T ss_pred             -c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence             2 234568899999999999999999999999999999643322                    378999999999999


Q ss_pred             CCHHHHHHHHhhc-----cccchhhhccccccccCCCCCCCchhhHHHHHH------------HHHHHHHhcCCCchHHH
Q 018303          266 LDPNVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR------------LALGLAESVSQSTPIAA  328 (358)
Q Consensus       266 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~gi~~p~~~  328 (358)
                      ++++.+.++..++     ...++++....+.+...++.   ....+.+|+.            ++++.++++|+++|+++
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~  307 (341)
T PRK08229        231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL---ARSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA  307 (341)
T ss_pred             CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc---cCchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence            9876543332222     12334444333333333322   1245777776            79999999999999999


Q ss_pred             HHHHHHHHHHHCCCC-CccHHHHHHHH
Q 018303          329 AANELYKVAKSHGLS-DEDFSAVIEAL  354 (358)
Q Consensus       329 a~~~~~~~a~~~g~~-~~d~~~~~~~~  354 (358)
                      .++++++.+.+.|.. ...-.++...+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (341)
T PRK08229        308 RLCALVHEAERAGARPAWSGEALLAEL  334 (341)
T ss_pred             HHHHHHHHHHhCCCcCCCChHHHHHHh
Confidence            999999999988753 34333444333

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.87  E-value=1.4e-20  Score=170.31  Aligned_cols=250  Identities=18%  Similarity=0.200  Sum_probs=176.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----cEEEE-cCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      |+|||||+|+||.++++.|.+.|+    +|++| +|++++.+.+.+.|+....+..++++++|+||+|+| +..++.++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            589999999999999999999998    89998 999888877777788888889999999999999995 88899998 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEe--cCCHhHHHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPLLDI  222 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~ll~~  222 (358)
                        .++.+.+++++++|++..+..  .+.+.+.+...  .++. +|......  ..+...+..  +++++.++.++++|+.
T Consensus        79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~~~--~~~~~~l~~~~~~~~~~~~~v~~l~~~  150 (266)
T PLN02688         79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPCLV--GEAASVMSLGPAATADDRDLVATLFGA  150 (266)
T ss_pred             --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHHHH--hCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence              677777889999997755533  33444444322  4553 45443322  222222222  2378889999999999


Q ss_pred             hcCCeEEeCCcChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhh-c--cccccccCC-
Q 018303          223 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS-L--KGPSMIESL-  296 (358)
Q Consensus       223 ~g~~~~~~g~~g~~~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~-~--~~~~~~~~~-  296 (358)
                      +|. ++++++.......-+  ....+.+.++.++.|+   +++.|++++.+.+++.++...++.+- .  ..+..+... 
T Consensus       151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v  226 (266)
T PLN02688        151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV  226 (266)
T ss_pred             CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            998 888765221122111  1233455666677777   58899999999999998766665432 2  222222222 


Q ss_pred             CCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          297 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       297 ~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      -.|+.+.       ...++..++.|++-.+.+++.+.++++.+.+
T Consensus       227 ~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~  264 (266)
T PLN02688        227 TSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS  264 (266)
T ss_pred             CCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            2454433       3456778889999999999999999998764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=1.1e-19  Score=165.48  Aligned_cols=255  Identities=18%  Similarity=0.170  Sum_probs=200.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv  130 (358)
                      |||.|||.|.+|...+..|+..||+|+.+|.++.+++.+...                   | +.+++|..++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            689999999999999999999999999999999988766421                   1 56788999999999999


Q ss_pred             EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCcC
Q 018303          131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPA  197 (358)
Q Consensus       131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~  197 (358)
                      ++|||.|+         .++.++   +++.+.++..+++|+-|+.++.+.+.+.+.+....    ..++..|.|-.+..+
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A  157 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence            99998664         345555   77788888889999999999999999988776653    346666766444322


Q ss_pred             C---CCceEEEecC-CHhHHHHHHHHHHHh--cCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303          198 E---DGQLIFLAAG-DKSLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  271 (358)
Q Consensus       198 ~---~~~~~~~~~g-~~~~~~~v~~ll~~~--g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~  271 (358)
                      -   ..+.-+++|. ++.+.+.+++++..+  ...++...+...+++.|+++|.+++.-+..++|...+|++.|+|.+++
T Consensus       158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V  237 (414)
T COG1004         158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV  237 (414)
T ss_pred             hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            1   1233355555 444677888888665  455666667777999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          272 VEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       272 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      .+.+...           +++...-..+  |+....++||+...+..++++|.+.++++++.+...+...
T Consensus       238 ~~gIGlD-----------~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~  296 (414)
T COG1004         238 AEGIGLD-----------PRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKD  296 (414)
T ss_pred             HHHcCCC-----------chhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            9887753           3333222233  4455678999999999999999999999999887766554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.85  E-value=6.4e-19  Score=169.72  Aligned_cols=254  Identities=17%  Similarity=0.137  Sum_probs=191.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhC-------------------CCccCCCHHHHhhcCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCD  128 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD  128 (358)
                      +|+|+|||+|.+|..+|..|+..  |++|+++|+++++++.+...                   ...++++..+.+++||
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad   80 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD   80 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence            37899999999999999999987  58899999999887765421                   1345567778889999


Q ss_pred             EEEEeeCChh--------------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--C--CeEecCCC
Q 018303          129 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPV  190 (358)
Q Consensus       129 ivi~~vp~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~--~~~~~~~~  190 (358)
                      ++++|||.+.              .++.++   +.+.+.++++++||.-|+..+...+.+...+.+.  +  ..+..+|.
T Consensus        81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE  157 (473)
T PLN02353         81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE  157 (473)
T ss_pred             EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence            9999997554              344555   6777888999999999999999998898887763  2  34566777


Q ss_pred             CCCCCcC---CCCceEEEecCC-----HhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          191 SGSKKPA---EDGQLIFLAAGD-----KSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS  261 (358)
Q Consensus       191 ~~~~~~~---~~~~~~~~~~g~-----~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~  261 (358)
                      +-.+-..   -..+.-+++|+.     ++..+.+.++++.+- ..++.+.++..+++.|++.|.+....++.++|...+|
T Consensus       158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lc  237 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (473)
T ss_pred             ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6444222   123333445652     335788888888875 3566778888999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC--chHHHHHHHHHH
Q 018303          262 EKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS--TPIAAAANELYK  335 (358)
Q Consensus       262 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~--~p~~~a~~~~~~  335 (358)
                      ++.|+|..++.+.+......+       +.++  ...+|+....+.||...+...++++|.+  .++.+++.++.+
T Consensus       238 e~~giD~~eV~~~~~~d~rig-------~~~l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~  304 (473)
T PLN02353        238 EATGADVSQVSHAVGKDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND  304 (473)
T ss_pred             HHhCCCHHHHHHHhCCCCcCC-------CCCC--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            999999999998877543111       1111  1123445567899999999999999998  778777664443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.85  E-value=1.5e-21  Score=181.91  Aligned_cols=152  Identities=10%  Similarity=0.060  Sum_probs=125.5

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|...  +++|+++++++.+.|+.         + |                       ++.+++|||||+|+||
T Consensus        84 v~napg~na~--aVAE~~~~~lL~l~r~~---------g-~-----------------------~L~gktvGIIG~G~IG  128 (378)
T PRK15438         84 FSAAPGCNAI--AVVEYVFSSLLMLAERD---------G-F-----------------------SLHDRTVGIVGVGNVG  128 (378)
T ss_pred             EEECCCcCch--HHHHHHHHHHHHHhccC---------C-C-----------------------CcCCCEEEEECcCHHH
Confidence            3445677666  89999999999888851         0 1                       4667899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhh----HhhhhcccccccccCCCCC
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPGK  158 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~----~~~~~~~~~~~~~~l~~~~  158 (358)
                      +.+|+++..+|++|++||+.....    ... ....++++++++||+|++|+|.+++    |.+++  +++.+..|++|+
T Consensus       129 ~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~ga  201 (378)
T PRK15438        129 RRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKPGA  201 (378)
T ss_pred             HHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCCCc
Confidence            999999999999999999753221    111 1245899999999999999999885    99999  889999999999


Q ss_pred             EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++||++||..+++++|.++++++.+.....+++..+|.
T Consensus       202 ilIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~  239 (378)
T PRK15438        202 ILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE  239 (378)
T ss_pred             EEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            99999999999999999999998777666777766653

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.85  E-value=3.8e-20  Score=168.48  Aligned_cols=250  Identities=16%  Similarity=0.215  Sum_probs=170.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCcc-chhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      .|+|+|||+|+||.++++.|...|    ++|.+++|+++ +.+.+.. .|+....++.++++++|+||+++| +.....+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA   81 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence            469999999999999999999987    78999999764 4455544 377777788899999999999996 7888888


Q ss_pred             hcccccccccCCCCCEEEEcc-CCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC---CHhHHHHHHH
Q 018303          144 ACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP  218 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~  218 (358)
                      +   +++.+.++++++||++. +..+.   .+.+.+. .+..++.. |.   .+......+..++++   +++.++.+++
T Consensus        82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~~~~~v~~  151 (279)
T PRK07679         82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPN---TSAAILKSATAISPSKHATAEHIQTAKA  151 (279)
T ss_pred             H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCC---HHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence            8   77777788899999984 44433   3444332 22223322 21   112222334455555   3678899999


Q ss_pred             HHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hhhh--ccccccc
Q 018303          219 LLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PMYS--LKGPSMI  293 (358)
Q Consensus       219 ll~~~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~--~~~~~~~  293 (358)
                      +|+.+|..++ +.+........+.  .+.+.+.++.++.|   .+++.|++++.+.+++..+...+ .++.  ...+..+
T Consensus       152 l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~~~~eal~e---~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l  227 (279)
T PRK07679        152 LFETIGLVSV-VEEEDMHAVTALSGSGPAYIYYVVEAMEK---AAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSIL  227 (279)
T ss_pred             HHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            9999998554 3321111011111  11223333333333   46899999999999999864433 4544  4567777


Q ss_pred             cCCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          294 ESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       294 ~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      .+++ .|++++..+       ++..++.|+.--+.+++.+..+++.+.|
T Consensus       228 ~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~  269 (279)
T PRK07679        228 RKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG  269 (279)
T ss_pred             HHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            7778 777755554       5566788999999999999999988864

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.84  E-value=9.9e-20  Score=177.90  Aligned_cols=198  Identities=14%  Similarity=0.107  Sum_probs=153.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  130 (358)
                      ++|||||+|.||..+|..|...|++|.+||+++++.+.+.+                   .+ +...+++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            58999999999999999999999999999999887654321                   12 56678898999999999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC-
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD-  209 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-  209 (358)
                      ++++|...+++..++  .++.+.++++.+ |.+++..+. ...+.+.+...+..++.+|+...    ..++++.+++|+ 
T Consensus        85 ieavpe~~~vk~~l~--~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~  156 (495)
T PRK07531         85 QESVPERLDLKRRVL--AEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK  156 (495)
T ss_pred             EEcCcCCHHHHHHHH--HHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence            999998888888664  445555666765 455444443 33677777666777888876521    234667777774 


Q ss_pred             --HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhccccchh
Q 018303          210 --KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT-FSEGLLHSEKVGLDPNVLVEVVSQGAISAPM  284 (358)
Q Consensus       210 --~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~  284 (358)
                        ++.++.+.++++.+|+++++++.        .+.|++.+.+..+ ++|++.++++.|++++++++++..+.+.+|.
T Consensus       157 t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~  226 (495)
T PRK07531        157 TSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA  226 (495)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence              79999999999999999999873        3445555655666 5999999999999999999999988766554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.84  E-value=3.9e-21  Score=179.71  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=125.1

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|+++++++++.|+.         +            .            ++.+++|||||+|+||
T Consensus        84 v~napg~na~--aVAE~v~~~lL~l~r~~---------g------------~------------~l~gktvGIIG~G~IG  128 (381)
T PRK00257         84 WSSAPGCNAR--GVVDYVLGSLLTLAERE---------G------------V------------DLAERTYGVVGAGHVG  128 (381)
T ss_pred             EEECCCcChH--HHHHHHHHHHHHHhccc---------C------------C------------CcCcCEEEEECCCHHH
Confidence            3445677777  88889998888877741         0            1            4667899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChh----hHhhhhcccccccccCCCCC
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGPGK  158 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~----~~~~~~~~~~~~~~~l~~~~  158 (358)
                      +.+|+++..+|++|++||+.....+     +.....++++++++||+|++|+|.++    .|.+++  +++.+..|++|+
T Consensus       129 ~~va~~l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ga  201 (381)
T PRK00257        129 GRLVRVLRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRPGA  201 (381)
T ss_pred             HHHHHHHHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCCCe
Confidence            9999999999999999998543211     22234589999999999999999987    699999  889999999999


Q ss_pred             EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++||++||.++++++|.++++++.+.....+++..+|.
T Consensus       202 ilIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~  239 (381)
T PRK00257        202 WLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ  239 (381)
T ss_pred             EEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence            99999999999999999999998776666677766553

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.84  E-value=1.2e-19  Score=163.30  Aligned_cols=262  Identities=16%  Similarity=0.195  Sum_probs=197.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ++|+|||.|++|+++|..|+..|++|.+|.|+++..+.+.+.              ++..++|+.++++++|+|++++| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            589999999999999999999999999999998877665542              24567899999999999999998 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChh-H----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHh
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-T----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS  211 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  211 (358)
                      +..++.++   +++...++++..+|+++-|-.. +    .+.+.+.+....+.+++.|.+..+........+.+.+.|++
T Consensus        81 s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~  157 (329)
T COG0240          81 SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE  157 (329)
T ss_pred             hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence            78999999   7777788999999999776332 2    33444455444578888998887766666666666777899


Q ss_pred             HHHHHHHHHHHhcCCeEEeCC-c--ChHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018303          212 LYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLV--------------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV  274 (358)
Q Consensus       212 ~~~~v~~ll~~~g~~~~~~g~-~--g~~~~~k~~--------------~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~  274 (358)
                      ..++++.+|..-.++++...+ .  ..+-++|-+              .|.-...+..+++|+.++....|-.++++..+
T Consensus       158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL  237 (329)
T COG0240         158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL  237 (329)
T ss_pred             HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence            999999999887777776666 2  223333333              35666678899999999999999999988776


Q ss_pred             Hhhc----cccchhhhcc--ccccccCCC-----CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018303          275 VSQG----AISAPMYSLK--GPSMIESLY-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  336 (358)
Q Consensus       275 ~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~  336 (358)
                      -..+    +..|+..+++  +..+.++.-     .....+....+....+.++++++++++|+.+++++++..
T Consensus       238 sGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~  310 (329)
T COG0240         238 SGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE  310 (329)
T ss_pred             ccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence            6544    3455555543  222333211     111345556788899999999999999999999998863

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.83  E-value=1.4e-18  Score=160.90  Aligned_cols=199  Identities=16%  Similarity=0.200  Sum_probs=159.6

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCcc-----chhhHHhCCCccCCCHHHHhh
Q 018303           71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAA  125 (358)
Q Consensus        71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~  125 (358)
                      |+|.|+|+|+.                    |..+|..|+..|++|++|||+++     ..+.+.+.|+....+..++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~   80 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK   80 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence            57888999886                    89999999999999999999876     334455678887888999999


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHH-HHHHHHHHh----cCCeEec-CCCCCCCCcCCC
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKA----TGASFLE-APVSGSKKPAED  199 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~  199 (358)
                      +||+||+++|....++.++   .++.+.++++++|||+|++.+... +.+.+.+..    .++.+.+ .++.+.    ..
T Consensus        81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~  153 (342)
T PRK12557         81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ  153 (342)
T ss_pred             CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence            9999999999666589998   778888999999999999988876 566666642    2443432 233332    22


Q ss_pred             CceEEEecC--------CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303          200 GQLIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  271 (358)
Q Consensus       200 ~~~~~~~~g--------~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~  271 (358)
                      +...++.++        +++.+++++++|+.+|.+++.++ .+.+...|+++|.+.+...++.+|++.++++.|.++...
T Consensus       154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~  232 (342)
T PRK12557        154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM  232 (342)
T ss_pred             chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            334444443        88899999999999999887777 589999999999999999999999999999999998877


Q ss_pred             HHHHhh
Q 018303          272 VEVVSQ  277 (358)
Q Consensus       272 ~~~~~~  277 (358)
                      .+-+..
T Consensus       233 ~~~~~~  238 (342)
T PRK12557        233 IEKQIL  238 (342)
T ss_pred             HHHHHH
Confidence            655543

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=2.4e-18  Score=156.14  Aligned_cols=204  Identities=20%  Similarity=0.223  Sum_probs=158.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  130 (358)
                      ++|||||+|.||..+|..++..|++|+++|.++.+++.+..                   .| .+.+++..++ +.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence            79999999999999999999999999999999988776542                   12 4455566664 589999


Q ss_pred             EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeE------ecCCCCCC
Q 018303          131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASF------LEAPVSGS  193 (358)
Q Consensus       131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~------~~~~~~~~  193 (358)
                      ++|||.+-         .++...   +.+.+.|++|.+||--|+..|..++.+...+.+.  |+.+      ..+|.-..
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~  165 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL  165 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence            99998542         233333   6777889999999999999999999998877664  2222      22343222


Q ss_pred             CCcCC---CCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018303          194 KKPAE---DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV  270 (358)
Q Consensus       194 ~~~~~---~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~  270 (358)
                      |-...   ....-++.|.+++..+.+..+.+.+-...+.+.+...+++.|+..|.+....+++++|...+|++.|++..+
T Consensus       166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe  245 (436)
T COG0677         166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE  245 (436)
T ss_pred             CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence            21111   111123334478888889999999977788999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 018303          271 LVEVVSQG  278 (358)
Q Consensus       271 ~~~~~~~~  278 (358)
                      +.++.+.-
T Consensus       246 vIeaAnt~  253 (436)
T COG0677         246 VIEAANTK  253 (436)
T ss_pred             HHHHhccC
Confidence            99987753

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.81  E-value=2.2e-18  Score=153.21  Aligned_cols=256  Identities=18%  Similarity=0.239  Sum_probs=203.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~vp~~~~~~  141 (358)
                      .+.||+||++-||+.++......|+.|.+|+|+..+++.+.+.     .+....|++|++   +...+|++.+.....+.
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD   85 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD   85 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence            3579999999999999999999999999999999988876543     244566888875   45889999987778888


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHH
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD  221 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~  221 (358)
                      ..+   +++.+.|.+|.+|||-++....++..-.+.+...|+-|+++.+.+++..+..|+. ++.+|++++...++.+|.
T Consensus        86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq  161 (487)
T KOG2653|consen   86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ  161 (487)
T ss_pred             HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence            999   8999999999999999999888888888999999999999999999999999975 789999999999999998


Q ss_pred             Hhc-------CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhc---cccchhhhcccc
Q 018303          222 IMG-------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQG---AISAPMYSLKGP  290 (358)
Q Consensus       222 ~~g-------~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~~---~~~s~~~~~~~~  290 (358)
                      .+.       .++.++|+-|+++.+|++.|.+.+.-++++.|+..++++ .|++.+++.+++..-   -.-|.+.+.. .
T Consensus       162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT-~  240 (487)
T KOG2653|consen  162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEIT-A  240 (487)
T ss_pred             HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHh-H
Confidence            763       346789999999999999999999999999999999999 899988888777642   2223333321 1


Q ss_pred             ccccCCCCCCCchhhHHHH-------HHHHHHHHHhcCCCchHHHHH
Q 018303          291 SMIESLYPTAFPLKHQQKD-------LRLALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~kd-------~~~~~~~a~~~gi~~p~~~a~  330 (358)
                      .+++-+-..|..+-.-..|       -.+.+..+.++|+|.|++..+
T Consensus       241 dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~ea  287 (487)
T KOG2653|consen  241 DILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEA  287 (487)
T ss_pred             HHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHH
Confidence            2222111222211111111       156777888999999886544

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=99.80  E-value=7.6e-19  Score=139.70  Aligned_cols=121  Identities=40%  Similarity=0.646  Sum_probs=112.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccc-cccCCCCCCCchhhHHHHHHH
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRL  312 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~  312 (358)
                      |++...|+++|.+....+.+++|++.++++.|+|++.+.+++..+.+.|++++.+.+. +..+++.++|+++.+.||+.+
T Consensus         1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l   80 (122)
T PF14833_consen    1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL   80 (122)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence            6789999999999999999999999999999999999999999999999999998885 888999999999999999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018303          313 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL  354 (358)
Q Consensus       313 ~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~  354 (358)
                      +.+++++.|+|+|+.+.+.+.++.+.++|++++|+++++++|
T Consensus        81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~  122 (122)
T PF14833_consen   81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL  122 (122)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence            999999999999999999999999999999999999999986

...

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=2.8e-18  Score=157.00  Aligned_cols=188  Identities=15%  Similarity=0.192  Sum_probs=143.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C-------------CCccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+.+.+           .             ++..+.++.+++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            47999999999999999999999999999999887665431           0             13456788889999


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEE-EEccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCc
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ  201 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~  201 (358)
                      ||+|++|+|...+++..++  .++.+.+++++++ +|+|+..+..   +.+.+..    .+++++ .|+..       ++
T Consensus        82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~  148 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK  148 (288)
T ss_pred             CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence            9999999998888777664  4566778889876 6888877754   4444432    244555 45433       35


Q ss_pred             eEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303          202 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  277 (358)
Q Consensus       202 ~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  277 (358)
                      ++.++++   +++.++.+.++++.+|+.++++++ +|      ++.|-+..   ..++|++.++++.-.++++++..+..
T Consensus       149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~  219 (288)
T PRK09260        149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRL  219 (288)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            7777777   899999999999999999999998 77      45454444   34669988888755789999998876


Q ss_pred             ccc
Q 018303          278 GAI  280 (358)
Q Consensus       278 ~~~  280 (358)
                      +.+
T Consensus       220 g~g  222 (288)
T PRK09260        220 GLN  222 (288)
T ss_pred             CCC
Confidence            543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=1e-17  Score=156.14  Aligned_cols=258  Identities=15%  Similarity=0.155  Sum_probs=169.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--C------------CccCCCHHHHh-hcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivi~~vp  135 (358)
                      |+|+|||+|.||+.+|..|++.|++|.+|+|+++..+.+...  +            +....+..+.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            579999999999999999999999999999988766555442  1            12345666766 58999999995


Q ss_pred             ChhhHhhhhcccccccc-cCCCCCEEEEccCCChhH-----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303          136 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD  209 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  209 (358)
                       +.+++.++   +++.+ .++++..++.+..|....     .+.+.+.+....+..+..|.+..+..........+.+.+
T Consensus        81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~  156 (326)
T PRK14620         81 -TQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN  156 (326)
T ss_pred             -HHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence             88999998   77776 777787777777665331     334455544333444444443221111111223344455


Q ss_pred             HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 018303          210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-----------------MMATFSEGLLHSEKVGL--DPNV  270 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~-----------------~~~~~~Ea~~l~~~~G~--~~~~  270 (358)
                      .+..+.+.++|+.-+.++....+.-...|.|++.|.+...                 +..++.|+..++++.|.  ++++
T Consensus       157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~  236 (326)
T PRK14620        157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT  236 (326)
T ss_pred             HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            6666777788877777787778866688999998875433                 46789999999999987  7888


Q ss_pred             HH------HHHhhccccchhhhccc-------cccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 018303          271 LV------EVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELY  334 (358)
Q Consensus       271 ~~------~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~  334 (358)
                      ++      +.+....  +...+++.       .++.++-.....+.-.....++.+.++++++|+++|+++.+++++
T Consensus       237 ~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~  311 (326)
T PRK14620        237 LIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL  311 (326)
T ss_pred             hhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            84      4442211  11111111       122221111111112233445789999999999999999999887

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=1.1e-17  Score=156.22  Aligned_cols=273  Identities=16%  Similarity=0.158  Sum_probs=190.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC---------------CccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .|+|+|||+|.||+.+|..|+..| +|.+|.++++..+.+.+.+               +...+++.++++++|+|++++
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav   85 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV   85 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence            368999999999999999999998 6888888887766554321               234567778889999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhH-----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD  209 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  209 (358)
                      | +..++.++   +++.+.++++..+|+++.|-...     .+.+.+.+......++..|.+..+.........++.+.+
T Consensus        86 p-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~  161 (341)
T PRK12439         86 P-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD  161 (341)
T ss_pred             C-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence            7 78899999   88888888888899988775542     334444443223345555654433222222223444557


Q ss_pred             HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG-----------------SMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~-----------------~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      ++..+.++.+|+.-+.+++...+.-..+|.+.+-|.+..                 .+..++.|+.+++++.|.++++++
T Consensus       162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~  241 (341)
T PRK12439        162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFA  241 (341)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            778889999999999999888885558888888775443                 356799999999999999999988


Q ss_pred             HHHhhc----cccchhhhcc--ccccccCCCCC-----CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          273 EVVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       273 ~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      .+..-+    +..|...+++  +..+.++....     -..+..+......+.++++++++++|+++++++++.      
T Consensus       242 gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~------  315 (341)
T PRK12439        242 GLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN------  315 (341)
T ss_pred             ccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh------
Confidence            765543    2333333332  23333321100     012344566778899999999999999999999884      


Q ss_pred             CCCccHHHHHHHH
Q 018303          342 LSDEDFSAVIEAL  354 (358)
Q Consensus       342 ~~~~d~~~~~~~~  354 (358)
                       ++.+...+++.+
T Consensus       316 -~~~~~~~~~~~l  327 (341)
T PRK12439        316 -HGSTVEQAYRGL  327 (341)
T ss_pred             -CCCCHHHHHHHH
Confidence             344555555443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.79  E-value=3.5e-17  Score=150.09  Aligned_cols=195  Identities=12%  Similarity=0.133  Sum_probs=145.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C---------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDiv  130 (358)
                      ++|+|||+|.||..+|..++..|++|.+||++++..+....           .         .+...+++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            58999999999999999999999999999999875443211           1         235567888999999999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec---
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA---  207 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  207 (358)
                      +.++|...++++.+|  +++.+.++++++|- +++. .....++.+.+... -.++..+.+..+...   +++-++.   
T Consensus        88 iEavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~~---pLVEVv~g~~  159 (321)
T PRK07066         88 QESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYLL---PLVEVLGGER  159 (321)
T ss_pred             EECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCCc-ccEEEEecCCccccC---ceEEEeCCCC
Confidence            999999999999886  67777888888444 4333 44445677766432 245555444443322   3333333   


Q ss_pred             CCHhHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc
Q 018303          208 GDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA  282 (358)
Q Consensus       208 g~~~~~~~v~~ll~~~g~~~~~~g-~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s  282 (358)
                      .+++.++.+..+++.+|+.++.+. + +|      ++.|-+...   .++|++.+.++...++++++.++..+.+..
T Consensus       160 T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~~a---~~~EA~~lv~eGvas~edID~a~~~g~g~r  227 (321)
T PRK07066        160 TAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLLEA---LWREALHLVNEGVATTGEIDDAIRFGAGIR  227 (321)
T ss_pred             CCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence            378999999999999999999884 5 77      555554443   467999999998899999999998776553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.78  E-value=7.9e-18  Score=164.34  Aligned_cols=186  Identities=19%  Similarity=0.309  Sum_probs=146.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|||||+|.||..||..++..|++|.+||++++..+..           .+.|             +....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            589999999999999999999999999999999877652           3334             466678866 569


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEec-CCCCCCCCcCCCC
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG  200 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~  200 (358)
                      ||+||.++|++.++++.+|  .++....++++++. |+|+.++.   .+.+.+..    .|++|++ +|++         
T Consensus        87 aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------  152 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------  152 (507)
T ss_pred             CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------
Confidence            9999999999999999986  44555567888884 88887775   45555443    2667776 4444         


Q ss_pred             ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +++.+++|   +++.++.+.++++.+|+.++++++ +|      ++.|-+..   ..++|++.++++.+++++++++++.
T Consensus       153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~  223 (507)
T PRK08268        153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR  223 (507)
T ss_pred             eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            35666664   899999999999999999999998 77      45454443   3678999999999999999999997


Q ss_pred             hccc
Q 018303          277 QGAI  280 (358)
Q Consensus       277 ~~~~  280 (358)
                      .+.+
T Consensus       224 ~~~G  227 (507)
T PRK08268        224 EAAG  227 (507)
T ss_pred             hcCC
Confidence            6543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.78  E-value=1e-17  Score=151.19  Aligned_cols=251  Identities=14%  Similarity=0.164  Sum_probs=174.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|||||+|+||.++++.|.+.|+    +|+++||++++.+.+.+ .|+....+..+++++||+||+|+| +..+..++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence            489999999999999999998874    69999999888777664 577677788899999999999996 78999999 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI  222 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~  222 (358)
                        +++.+.+++++++|++..|-..  +.+.+.+... ..++ -.|..  +.....+...+..+.  +++..+.++.+|+.
T Consensus        81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~  153 (272)
T PRK12491         81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNIFNI  153 (272)
T ss_pred             --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHHHHc
Confidence              7777778888999988766554  4566666432 1222 22332  222333444333332  56678899999999


Q ss_pred             hcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC
Q 018303          223 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY  297 (358)
Q Consensus       223 ~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~  297 (358)
                      +|... .+.+  .....++--....+.+.++.++.++.   .+.|++.++..+++.++.. ...++..  ..|..+.+..
T Consensus       154 ~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~---v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V  229 (272)
T PRK12491        154 FGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAA---VLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV  229 (272)
T ss_pred             CCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            99864 5554  33222332234455555555555554   8899999999999998643 3333322  2233333333


Q ss_pred             -CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          298 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       298 -~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                       +||.+...       .++..++.|+.--+.+++.+..+++.+.+
T Consensus       230 ~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~  267 (272)
T PRK12491        230 CSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS  267 (272)
T ss_pred             CCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence             57665444       35677789999999999999999987753

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.78  E-value=1e-16  Score=145.73  Aligned_cols=192  Identities=16%  Similarity=0.318  Sum_probs=141.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+|+|||+|.||..+++.|...|+  +|.+||++++..+.+.+.|.. ...+..++. ++|+||+|+| +..+..++   
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~---   75 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL---   75 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence            479999999999999999999885  788999998877777666653 345677765 5999999997 66777788   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCC----CCcC----CCCceEEEec---CCHhHHHH
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGS----KKPA----EDGQLIFLAA---GDKSLYNT  215 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~----~~~~----~~~~~~~~~~---g~~~~~~~  215 (358)
                      .++.+ ++++++|+++++......+.+.+.   .+..+++. |+.+.    +...    ..+..++++.   .+++.++.
T Consensus        76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~  151 (275)
T PRK08507         76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER  151 (275)
T ss_pred             HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence            77777 889999999877665544444333   22356765 87654    2221    1455555554   36778899


Q ss_pred             HHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          216 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       216 v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +.++++.+|.+++++++.+++...++++++.. ....++.+++   . .+.+.+.+.++..
T Consensus       152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~---~-~~~~~~~~~~~~~  207 (275)
T PRK08507        152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV---L-KEEDERNIFDLAG  207 (275)
T ss_pred             HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH---H-hcCChHHHHhhcc
Confidence            99999999999999999999999999998865 4444555554   1 3556665545443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.78  E-value=4.8e-17  Score=153.48  Aligned_cols=180  Identities=16%  Similarity=0.241  Sum_probs=141.7

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ..++|+||| +|.||..+|+.|...|++|.+||++..             .+.++++++||+||+|+|. ..+..++   
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~-~~~~~~~---  159 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPI-HLTEEVI---  159 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcH-HHHHHHH---
Confidence            447999998 999999999999999999999998531             2567888999999999984 4677777   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcC
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGK  225 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~  225 (358)
                      +++.+ +++|++|+|+++.+......+.+.+.  + .|+ .+|++|.+.....+..+++..+ +++.++.+.++++.+|.
T Consensus       160 ~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~-~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~  235 (374)
T PRK11199        160 ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--G-PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA  235 (374)
T ss_pred             HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--C-CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence            66766 89999999999988776666665542  2 477 6788887665555566666655 66788999999999999


Q ss_pred             CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018303          226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  273 (358)
Q Consensus       226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~  273 (358)
                      +++.+++.+++..+++++.+   .++.+++++..+++ .+.+.+.+.+
T Consensus       236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~  279 (374)
T PRK11199        236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA  279 (374)
T ss_pred             EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            99999999999999999844   44455666666655 6778776544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.77  E-value=1.2e-17  Score=162.64  Aligned_cols=186  Identities=18%  Similarity=0.205  Sum_probs=142.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|||||+|.||..||..++..|++|.+||++++..+..           .+.|             +..++++++ +.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            589999999999999999999999999999998876542           2223             345677766 569


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEec-CCCCCCCCcCCCC
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG  200 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~  200 (358)
                      ||+||.|+|.+.+++..+|  .++....++++++. |+|+..+.   .+.+.+..    .|+||++ +|++         
T Consensus        85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~---------  150 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM---------  150 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence            9999999999999999886  44555667777766 55554443   34454432    3566666 3443         


Q ss_pred             ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +++.+++|   +++.++.+.++++.+|+.++++++ +|      ++.|-+..   ..++|++.++++.+++++++++++.
T Consensus       151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al~  221 (503)
T TIGR02279       151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG------FIVNRVAR---PYYAEALRALEEQVAAPAVLDAALR  221 (503)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC------cHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            36677777   899999999999999999999998 77      34444443   4778999999999999999999998


Q ss_pred             hccc
Q 018303          277 QGAI  280 (358)
Q Consensus       277 ~~~~  280 (358)
                      .+.+
T Consensus       222 ~~~G  225 (503)
T TIGR02279       222 DGAG  225 (503)
T ss_pred             hcCC
Confidence            6533

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.77  E-value=1.3e-16  Score=153.33  Aligned_cols=196  Identities=19%  Similarity=0.300  Sum_probs=147.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|+||| +|.||..+|+.|...|++|.+|+|+++..... .+.|+....+..+.+.++|+|++|+| +..+..++   +
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~   76 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K   76 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence            5899997 89999999999999999999999988765333 33466666788888999999999998 56778888   7


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC---CHhHHHHHHHHHHHhc
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG  224 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll~~~g  224 (358)
                      ++.+.++++++++|+++......+.+.+.++ .+..++++ |++|.......+..++++.+   +++.++.++++|+.+|
T Consensus        77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G  155 (437)
T PRK08655         77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG  155 (437)
T ss_pred             HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence            8888899999999999988887777777754 35678876 88775544455666666544   5778899999999999


Q ss_pred             CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018303          225 KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  275 (358)
Q Consensus       225 ~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  275 (358)
                      .+++.+++..+......+ +.+..+...++..+   +++.|++.+...++.
T Consensus       156 ~~v~~~~~e~HD~~~a~v-s~lph~~a~al~~~---l~~~g~~~~~~~~~a  202 (437)
T PRK08655        156 ARVIVTSPEEHDRIMSVV-QGLTHFAYISIAST---LKRLGVDIKESRKFA  202 (437)
T ss_pred             CEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHcCCCHHHHHhhc
Confidence            999988887655555333 33333333333333   366798887765443

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.76  E-value=6.8e-17  Score=143.03  Aligned_cols=249  Identities=19%  Similarity=0.231  Sum_probs=174.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCccchhhHH-hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|||||+|+||++++..|.+.|    .+|++.+|++++.+.+. +.|+..+.+..+++.++|+|+++| +|...+.++ 
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl-   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL-   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence            68999999999999999999998    68999999998886443 446655678889999999999999 799999999 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  222 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  222 (358)
                        .++.+ ..++++||.+..+-+.  +.+.+.+.  +..++. .|...  .....+...+..+  .+++..+.+..+|+.
T Consensus        80 --~~l~~-~~~~~lvISiaAGv~~--~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~  150 (266)
T COG0345          80 --SKLKP-LTKDKLVISIAAGVSI--ETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAFVEALLSA  150 (266)
T ss_pred             --HHhhc-ccCCCEEEEEeCCCCH--HHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHHHHHHHHh
Confidence              66666 7789999987665444  45777775  333433 23322  2223344434333  277888899999999


Q ss_pred             hcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhccc--cccccCCC
Q 018303          223 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--PSMIESLY  297 (358)
Q Consensus       223 ~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~~~~~~--~~~~~~~~  297 (358)
                      +|..+ .+.+.....+..+.  ...+.+.++.++.++   +.+.|++.+...+++.++. |...++....  |..++...
T Consensus       151 ~G~v~-~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V  226 (266)
T COG0345         151 VGKVV-EVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV  226 (266)
T ss_pred             cCCeE-EechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence            99755 44453333333333  344444444444443   4889999999999999864 3344444433  33444444


Q ss_pred             -CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          298 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       298 -~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                       +||.+....       ++..++.|+..-+.+++.+.++++.+.|
T Consensus       227 tSPGGtTiag-------l~~le~~g~~~~v~~av~aa~~r~~el~  264 (266)
T COG0345         227 TSPGGTTIAG-------LRVLEEDGFRGAVIEAVEAAYKRSEELG  264 (266)
T ss_pred             cCCCchHHHH-------HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence             677765554       3455588999999999999999888754

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.76  E-value=8.3e-17  Score=145.80  Aligned_cols=252  Identities=18%  Similarity=0.176  Sum_probs=165.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +|+|+|||+|+||..+++.|...|   ++|.+++|++++.+.+.+. ++....+..++++++|+|++|+| +..++.++ 
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~-   79 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL-   79 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH-
Confidence            368999999999999999999988   7899999998887777664 67677788888999999999996 77888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI  222 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~  222 (358)
                        +++.+.+  +++||+++.+...  +.+.+.+. .+..++.. |.  .+.....+...+..+.  +++..+.++.+|+.
T Consensus        80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~  150 (267)
T PRK11880         80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELVENLLSA  150 (267)
T ss_pred             --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence              6665555  5788888776643  34555553 23344432 32  2222333333334443  78889999999999


Q ss_pred             hcCCeEEeC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-
Q 018303          223 MGKSRFYLG-DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY-  297 (358)
Q Consensus       223 ~g~~~~~~g-~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~-  297 (358)
                      +|. ++.+. +.....+.-+..+...+ ....+..+...+.+.|+++++..+++..... ....+..  ..+..+.... 
T Consensus       151 lG~-~~~~~~e~~~d~~~a~~~~~pa~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~  228 (267)
T PRK11880        151 FGK-VVWVDDEKQMDAVTAVSGSGPAY-VFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVT  228 (267)
T ss_pred             CCe-EEEECChHhcchHHHHhcChHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCC
Confidence            997 44555 33323333333332111 1122223333357899999999988887532 2222221  1122221112 


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      .||.+       +...++..++.|++-.+.+++.+.++++.+.+
T Consensus       229 tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~  265 (267)
T PRK11880        229 SPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG  265 (267)
T ss_pred             CCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence            34433       34456778889999999999999999998753

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.76  E-value=4.9e-17  Score=146.45  Aligned_cols=244  Identities=16%  Similarity=0.153  Sum_probs=161.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCc---EEEEcCCccchhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      |+|||||+|+||+.+++.|...|+.   +.+++|++++.+.+.+.  +...+.+..++++++|+|++|+| +.....++ 
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   78 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL-   78 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            4799999999999999999988854   57899998887776653  45667789999999999999997 78888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK  225 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~  225 (358)
                        +++  .+++++++|+++.  ....+.+.+.+......+..+|+....  ...+. ..++.++    +.++++|+.+|.
T Consensus        79 --~~l--~~~~~~~vis~~a--g~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~  145 (258)
T PRK06476         79 --RAL--RFRPGQTVISVIA--ATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT  145 (258)
T ss_pred             --HHh--ccCCCCEEEEECC--CCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence              554  2578899998764  445556777775444455566663222  22232 2333332    579999999998


Q ss_pred             CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hh-hhc--cccccccCC-CCCC
Q 018303          226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PM-YSL--KGPSMIESL-YPTA  300 (358)
Q Consensus       226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~-~~~--~~~~~~~~~-~~~~  300 (358)
                      .++ +.+...-..+..+.. ..+.....+.++..++++.|++++++.+++......+ .+ ...  ..+..+.+. -+||
T Consensus       146 ~~~-~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg  223 (258)
T PRK06476        146 AVE-CDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG  223 (258)
T ss_pred             cEE-ECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence            776 443221111211222 2333335677888889999999999999988754332 23 121  222333333 3566


Q ss_pred             CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          301 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       301 ~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      .+...       .++..++.|+.-.+.+++.+..+++.
T Consensus       224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~  254 (258)
T PRK06476        224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN  254 (258)
T ss_pred             chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence            54444       35566778888888777777766654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.76  E-value=7.2e-17  Score=146.88  Aligned_cols=175  Identities=18%  Similarity=0.251  Sum_probs=133.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |+|+|||+|.||..+|..|.+.|++|.+||++++..+.+.+.|.. ...+..+.++++|+||+|+| +..+..++   ++
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~   76 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ   76 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence            489999999999999999999999999999998877777666542 22233356789999999997 66677777   77


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc-C-------CCCceEEEec---CCHhHHHHHH
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLAA---GDKSLYNTVA  217 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~-------~~~~~~~~~~---g~~~~~~~v~  217 (358)
                      +.+.++++.+++|+++.+....+.+.+..    ..|++ +|+++.+.. .       -.+..++++.   ++++.++.++
T Consensus        77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~----~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~  152 (279)
T PRK07417         77 LIPALPPEAIVTDVGSVKAPIVEAWEKLH----PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE  152 (279)
T ss_pred             HHHhCCCCcEEEeCcchHHHHHHHHHHhh----CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence            87888899999999888765544443322    24776 688776521 1       1233344433   4778899999


Q ss_pred             HHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHH
Q 018303          218 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT  253 (358)
Q Consensus       218 ~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~  253 (358)
                      ++++.+|.+++++++.+++...+++++........+
T Consensus       153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l  188 (279)
T PRK07417        153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAAL  188 (279)
T ss_pred             HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence            999999999999999999999999988776655433

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.75  E-value=9.3e-17  Score=148.32  Aligned_cols=255  Identities=18%  Similarity=0.174  Sum_probs=169.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      |+|+|||+|.||..+|..|++.|++|.+++| +++.+.+.+.|..             ..++.+++.+.+|+|++|+| +
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk-~   78 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK-A   78 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec-c
Confidence            5899999999999999999999999999999 6666666554421             13455666688999999996 6


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCCCCCCcCCCCceEEEecC----C
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAG----D  209 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g----~  209 (358)
                      .+++.++   +.+.+.+.++.+||.+.++- ...+.+.+.+.+.    ++.++.+...+.......+...+..+.    .
T Consensus        79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~  154 (305)
T PRK12921         79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR  154 (305)
T ss_pred             cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence            7888888   77777788888888887764 3344566665443    223333333322111111211222322    2


Q ss_pred             HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 018303          210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP  268 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~~  268 (358)
                      .+..+.+..+|...|..+....+.....|.|++.|...+.                     +..++.|...++++.|++.
T Consensus       155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~  234 (305)
T PRK12921        155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL  234 (305)
T ss_pred             CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3456678888888888777777788899999998865533                     4467899999999999863


Q ss_pred             --HHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          269 --NVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       269 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                        +...+.+......   .....++|.+ |+..+  .+++.+   .+.++++++++|+++|.++.+.++++...
T Consensus       235 ~~~~~~~~~~~~~~~---~~~~~sSm~~-D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~~~~~~  301 (305)
T PRK12921        235 RDDVVEEIVKIFAGA---PGDMKTSMLR-DMEKGRPLEIDHL---QGVLLRRARAHGIPTPILDTVYALLKAYE  301 (305)
T ss_pred             ChhHHHHHHHHHhcc---CCCCCcHHHH-HHHcCCcccHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence              3333333321000   0011222332 22222  234444   67899999999999999999999987654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.74  E-value=3.1e-16  Score=146.24  Aligned_cols=260  Identities=12%  Similarity=0.034  Sum_probs=183.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCC-------CcEEEEcCCccc-----hhhHHhC--------------CCccCCCHHH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDE  122 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~~-----~~~~~~~--------------g~~~~~~~~~  122 (358)
                      ..++|+|||.|+||+++|..|...|       ++|.+|.|+++.     .+.+.+.              ++..++|+.+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            3469999999999999999999876       899999998752     3433321              2344678889


Q ss_pred             HhhcCCEEEEeeCChhhHhhhhcccccccc--cCCCCCEEEEccCCChh-------HHHHHHHHHHhcCCeEecCCCCCC
Q 018303          123 VAASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGS  193 (358)
Q Consensus       123 ~~~~aDivi~~vp~~~~~~~~~~~~~~~~~--~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~  193 (358)
                      +++++|+|++++| +..++.++   +++.+  .++++.++|+++-|-..       ..+.+.+.+. ..+.++..|.+..
T Consensus        90 av~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~  164 (365)
T PTZ00345         90 AVEDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAN  164 (365)
T ss_pred             HHhcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHH
Confidence            9999999999997 88899999   77776  67778889988665332       2334444442 3566778888776


Q ss_pred             CCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cC--hHHHHHHH--------------HHHHHHHHHHHHHH
Q 018303          194 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMKLV--------------VNMIMGSMMATFSE  256 (358)
Q Consensus       194 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g--~~~~~k~~--------------~n~~~~~~~~~~~E  256 (358)
                      +..........+.+.+++..+.++.+|..-.++++...| .|  .+-++|-+              .|.-...+..++.|
T Consensus       165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E  244 (365)
T PTZ00345        165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE  244 (365)
T ss_pred             HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            665555566666777888889999999877777776666 33  23344433              35666677899999


Q ss_pred             HHHHHHHcCC--CHHHHHHHHhhc----cccchhhhcc--ccccccCC--CC--C------CCchhhHHHHHHHHHHHHH
Q 018303          257 GLLHSEKVGL--DPNVLVEVVSQG----AISAPMYSLK--GPSMIESL--YP--T------AFPLKHQQKDLRLALGLAE  318 (358)
Q Consensus       257 a~~l~~~~G~--~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~--~------~~~~~~~~kd~~~~~~~a~  318 (358)
                      +.+++++.|-  ++++++.+...+    +..|  .+++  +..+.++.  ..  .      ...+..+......+.++++
T Consensus       245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~  322 (365)
T PTZ00345        245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLE  322 (365)
T ss_pred             HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHH
Confidence            9999999974  888888765543    2223  2322  23333321  00  0      0122345666788999999


Q ss_pred             hcCC--CchHHHHHHHHHH
Q 018303          319 SVSQ--STPIAAAANELYK  335 (358)
Q Consensus       319 ~~gi--~~p~~~a~~~~~~  335 (358)
                      ++++  ++|+++++++++.
T Consensus       323 ~~~i~~~~Pi~~~vy~il~  341 (365)
T PTZ00345        323 SHDLKKEFPLFTVTYKIAF  341 (365)
T ss_pred             HcCCCCCCCHHHHHHHHHh
Confidence            9999  8999999999984

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.74  E-value=2.7e-16  Score=145.19  Aligned_cols=256  Identities=21%  Similarity=0.217  Sum_probs=168.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----------cCCCHHHHhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      |+|+|||+|.||+.+|..|+..|++|.+++|+++..+.+.+.|..           ...+..++ +.+|+|++++| +.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence            589999999999999999999999999999987777766665542           23455555 88999999996 678


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe----EecCCCCC--CCCcCCCCceEEEec-CCHhH
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSG--SKKPAEDGQLIFLAA-GDKSL  212 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~-g~~~~  212 (358)
                      ++.++   +.+.+.+.++++||.+.++.. ..+.+.+.+....+.    +..+-..+  .......+...+... +..+.
T Consensus        79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~  154 (304)
T PRK06522         79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA  154 (304)
T ss_pred             HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence            88888   778778888888888877643 334455555432211    11111111  111112233322211 12234


Q ss_pred             HHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--H
Q 018303          213 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP--N  269 (358)
Q Consensus       213 ~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~~--~  269 (358)
                      .+.+.++|+..+..+....+.....|.|++.|...+.                     +..++.|...++++.|++.  +
T Consensus       155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~  234 (304)
T PRK06522        155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE  234 (304)
T ss_pred             HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence            6778888888888877777788899999998864432                     3467899999999998754  4


Q ss_pred             HHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          270 VLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      .+.+.+......   .....++|.+ |...+  -+++.+   +++++++++++|+++|+++.+.++++....
T Consensus       235 ~~~~~~~~~~~~---~~~~~sSm~~-D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~  299 (304)
T PRK06522        235 EVREYVRQVIQK---TAANTSSMLQ-DLEAGRPTEIDAI---VGYVLRRGRKHGIPTPLNDALYGLLKAKES  299 (304)
T ss_pred             HHHHHHHHHhhc---cCCCCchHHH-HHHcCCCcccchh---ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence            444443321100   0011123332 22112  233444   678999999999999999999999877654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.74  E-value=1.5e-16  Score=144.97  Aligned_cols=194  Identities=15%  Similarity=0.180  Sum_probs=141.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|||||+|.||..+|..++..|++|++||++++..+.           +.+.|             +..++++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999999987655           22222             2356677 55799


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccC-CCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCCCCCCCCcCCCCceE
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAPVSGSKKPAEDGQLI  203 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~  203 (358)
                      ||+|+.|+|++.+++..+|  ..+-+.. ++++++++.+++.+....+.....+++  +++|++.     ++....-.++
T Consensus        85 ~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P-----~~~~~lvElv  157 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNP-----VPVLPLVELV  157 (286)
T ss_pred             CCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCC-----cccCceEEEe
Confidence            9999999999999999885  3444445 789999988777777654433333333  4455542     2211111333


Q ss_pred             EEecCCHhHHHHHHHHHH-HhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303          204 FLAAGDKSLYNTVAPLLD-IMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  281 (358)
Q Consensus       204 ~~~~g~~~~~~~v~~ll~-~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  281 (358)
                      ....++++.++.+.+++. .+|+.++.+++ +|      ++.|-+.   ...++|++.++++...++++++.++..+.+.
T Consensus       158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nRi~---~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~  228 (286)
T PRK07819        158 PTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNALL---VPYLLSAIRMVESGFATAEDIDKAMVLGCAH  228 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            334568999999999988 69999999988 77      4444443   3446699999888667899999998765443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.73  E-value=1.9e-16  Score=145.41  Aligned_cols=187  Identities=17%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..++..|++|.+||++++..+.           +.+.|             ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            58999999999999999999999999999999876542           22222             2233344 56899


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCc
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ  201 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~  201 (358)
                      ||+||+|+|.+.+++..++  .++.+.++++++|+ |+|+..+.   .+.+.+..    .+++++++|...        +
T Consensus        84 aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~--------~  150 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM--------K  150 (295)
T ss_pred             CCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------c
Confidence            9999999999899888875  55666788998887 66666544   34444432    244555555432        2


Q ss_pred             eEEEec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303          202 LIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  277 (358)
Q Consensus       202 ~~~~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  277 (358)
                      ++.++.   ++++.++.+.++++.+|+.++.+++ +|     .++++++.    ..++|+++++++...++++++..+..
T Consensus       151 lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~  221 (295)
T PLN02545        151 LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKL  221 (295)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            334443   4889999999999999999999988 56     23333333    34679999988877889999988776


Q ss_pred             ccc
Q 018303          278 GAI  280 (358)
Q Consensus       278 ~~~  280 (358)
                      +.+
T Consensus       222 g~g  224 (295)
T PLN02545        222 GTN  224 (295)
T ss_pred             ccC
Confidence            543

>PRK07680 late competence protein ComER; Validated

Probab=99.73  E-value=3.1e-16  Score=142.41  Aligned_cols=195  Identities=16%  Similarity=0.247  Sum_probs=135.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      |+|+|||+|+||..+++.|.+.|+    +|.+|+|++++.+.+.+.  ++....+..++++++|+|++++| +..+..++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            479999999999999999998883    799999998877666553  56667788898999999999995 78899998


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHH
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  222 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  222 (358)
                         +++.+.++++++||+++.+.  ..+.+.+.+....+.++..    .+.....+...+..+  .+++..+.++++|+.
T Consensus        80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~  150 (273)
T PRK07680         80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLFSN  150 (273)
T ss_pred             ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence               77777788899999998654  4556666654333334321    112223455544444  356778899999999


Q ss_pred             hcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303          223 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  278 (358)
Q Consensus       223 ~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  278 (358)
                      +|. ++.+.+.-......+.  ...+...++.++.++.  .++.|+++++..+++...
T Consensus       151 ~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~  205 (273)
T PRK07680        151 IST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM  205 (273)
T ss_pred             CCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence            995 5555542111112222  2334444444444443  244899999999888875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.72  E-value=6.3e-16  Score=143.12  Aligned_cols=256  Identities=18%  Similarity=0.167  Sum_probs=169.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------------cCCCHHHHhhcCCEEEEe
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~  133 (358)
                      +..|+|+|||+|.||+.+|..|++.|++|.++.|++.  +.....|..              ...+. +....+|+|++|
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila   79 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG   79 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence            4457999999999999999999999999999999753  334443321              11122 345679999999


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCC--CcCCCCceEEE-e
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSK--KPAEDGQLIFL-A  206 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~--~~~~~~~~~~~-~  206 (358)
                      ++ ..++..++   +.+.+.+.++..++...+|.. ..+.+.+.+....    +.++++...+..  .....+...+- .
T Consensus        80 vK-~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~  154 (313)
T PRK06249         80 LK-TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH  154 (313)
T ss_pred             ec-CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence            95 66777777   677777888888888877644 3445666664432    222222222211  11122333321 1


Q ss_pred             cC-C-----HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 018303          207 AG-D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLL  259 (358)
Q Consensus       207 ~g-~-----~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~  259 (358)
                      .+ +     .+..+.+..+|+..|..+....++....|.|++.|...+.                     +..++.|+..
T Consensus       155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~  234 (313)
T PRK06249        155 SGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQ  234 (313)
T ss_pred             CCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHH
Confidence            22 2     3566778889999999988888888899999998864432                     4567899999


Q ss_pred             HHHHcCCCH--HHHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018303          260 HSEKVGLDP--NVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       260 l~~~~G~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      ++++.|++.  +.+.+.+...... +   ...++|.+ |...|.  +++.+   .+.++++++++|+++|+++.++++++
T Consensus       235 va~a~Gi~~~~~~~~~~~~~~~~~-~---~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~Gi~~P~~~~l~~~l~  306 (313)
T PRK06249        235 GAAACGHTLPEGYADHMLAVTERM-P---DYRPSMYH-DFEEGRPLELEAI---YANPLAAARAAGCAMPRVEMLYQALE  306 (313)
T ss_pred             HHHhcCCCCChhHHHHHHHHhhcC-C---CCCChHHH-HHHCCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999863  3233333221111 0   11244553 443333  35555   78999999999999999999999888


Q ss_pred             HHHH
Q 018303          336 VAKS  339 (358)
Q Consensus       336 ~a~~  339 (358)
                      ...+
T Consensus       307 ~~e~  310 (313)
T PRK06249        307 FLDR  310 (313)
T ss_pred             HHHh
Confidence            7654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.72  E-value=3.8e-16  Score=143.23  Aligned_cols=189  Identities=16%  Similarity=0.209  Sum_probs=133.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..++..|++|.+||++++..+...+           .|             +...++++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            58999999999999999999999999999999877654321           12             34456664 4789


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHhc----CCeEecCCCCCCCCcCCCCc
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQ  201 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~  201 (358)
                      ||+|++|+|...+.+..++  +++.+.++++++++ |+|+..+.   .+.+.+...    ++++++.     ++....-.
T Consensus        84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p-----~~~~~~ve  153 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNP-----VPVMKLVE  153 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCC-----cccCceEE
Confidence            9999999998777766653  56777889999888 55554432   466655321    3445541     11111111


Q ss_pred             eEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303          202 LIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       202 ~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  279 (358)
                      .....+++++.++.+.++++.+|+.++++++ +|     +++++++..    .++|++.+.++.-.++++++.++..+.
T Consensus       154 i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg-----~i~nRl~~~----~~~ea~~~~~~g~~~~~~iD~~~~~g~  223 (292)
T PRK07530        154 LIRGIATDEATFEAAKEFVTKLGKTITVAEDFPA-----FIVNRILLP----MINEAIYTLYEGVGSVEAIDTAMKLGA  223 (292)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC-----hHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            1111346899999999999999999999988 54     444555433    456998888884458999999887554

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.71  E-value=4.2e-16  Score=144.37  Aligned_cols=257  Identities=12%  Similarity=0.066  Sum_probs=177.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC--------CcEEEEcCC-----ccchhhHHhC--------------CCccCCCHHHHh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRT-----KSKCDPLISL--------------GAKYQPSPDEVA  124 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g--------~~V~~~~~~-----~~~~~~~~~~--------------g~~~~~~~~~~~  124 (358)
                      +|+|||+|++|+++|..|+..|        ++|.+|.|+     .+..+.+.+.              ++...+|+++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999999988        999999983     2222222211              133557889999


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhH-------HHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      +++|+|++++| +..++.++   +++.+.+++++.+|+++-|-...       .+.+.+.+ ...+.++..|.+..+...
T Consensus        81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~  155 (342)
T TIGR03376        81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK  155 (342)
T ss_pred             hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence            99999999997 78899988   78888888899999987663322       23444445 335667788887766555


Q ss_pred             CCCceEEEecCC----HhHHHHHHHHHHHhcCCeEEeCC-cC--hHHHHHHH--------------HHHHHHHHHHHHHH
Q 018303          198 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMKLV--------------VNMIMGSMMATFSE  256 (358)
Q Consensus       198 ~~~~~~~~~~g~----~~~~~~v~~ll~~~g~~~~~~g~-~g--~~~~~k~~--------------~n~~~~~~~~~~~E  256 (358)
                      .......+.+.+    .+..+.++.+|..-.++++...+ .|  .+-++|-+              .|.-...+..++.|
T Consensus       156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E  235 (342)
T TIGR03376       156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE  235 (342)
T ss_pred             CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            555555556666    78888899998876666666665 33  23344433              25666677899999


Q ss_pred             HHHHHHHcCCCHH--HHHHHHhhcc----ccchhhhc--ccccccc-CCC-C----C--CCchhhHHHHHHHHHHHHHhc
Q 018303          257 GLLHSEKVGLDPN--VLVEVVSQGA----ISAPMYSL--KGPSMIE-SLY-P----T--AFPLKHQQKDLRLALGLAESV  320 (358)
Q Consensus       257 a~~l~~~~G~~~~--~~~~~~~~~~----~~s~~~~~--~~~~~~~-~~~-~----~--~~~~~~~~kd~~~~~~~a~~~  320 (358)
                      +.+++++.|.+++  +++.+..-+.    ..|  .++  .+..+.+ +.. .    .  ...+..+......+.++++++
T Consensus       236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~  313 (342)
T TIGR03376       236 MIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNK  313 (342)
T ss_pred             HHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHc
Confidence            9999999999777  7765544331    222  222  2233333 211 0    0  112233455578889999999


Q ss_pred             CCC--chHHHHHHHHHH
Q 018303          321 SQS--TPIAAAANELYK  335 (358)
Q Consensus       321 gi~--~p~~~a~~~~~~  335 (358)
                      +++  +|+++++++++.
T Consensus       314 ~i~~~~Pi~~~vy~il~  330 (342)
T TIGR03376       314 NKDDEFPLFEAVYQILY  330 (342)
T ss_pred             CCCcCCCHHHHHHHHHh
Confidence            999  999999999884

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=7.1e-16  Score=142.78  Aligned_cols=193  Identities=15%  Similarity=0.146  Sum_probs=136.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----C--------------CccCCCHHHHhhcCCEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDivi  131 (358)
                      ++|+|||+|.||..+|..|+..|++|++||++++..+.+.+.     +              +...++..+++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            589999999999999999999999999999988776554321     1              234567888889999999


Q ss_pred             EeeCChhhH-hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--
Q 018303          132 AMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--  208 (358)
Q Consensus       132 ~~vp~~~~~-~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  208 (358)
                      +|+|...+. ..++   .++...++++++|+..+.+.+  ...+.+.+.. ...++....+..+..   ..+..++.+  
T Consensus        85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~---~~l~~i~~g~~  155 (311)
T PRK06130         85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV---IPLVEVVRGDK  155 (311)
T ss_pred             EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc---CceEEEeCCCC
Confidence            999876544 4455   555555666766654444333  3356666543 223444433332221   123334444  


Q ss_pred             -CHhHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303          209 -DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  281 (358)
Q Consensus       209 -~~~~~~~v~~ll~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  281 (358)
                       +++.++.+.++++.+|+.++.++.  +|.     +++|.+    ...++|++.++++.|++++++++++..+.+.
T Consensus       156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~  222 (311)
T PRK06130        156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGI  222 (311)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence             689999999999999999999974  562     445553    3568899999999999999999999876554

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.70  E-value=1.2e-15  Score=139.55  Aligned_cols=193  Identities=13%  Similarity=0.132  Sum_probs=136.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------------CCCccCCCHHHHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVAA  125 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------------~g~~~~~~~~~~~~  125 (358)
                      ++|+|||+|.||..+|..++..|++|.+||++++..+...+                         .++...++++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999999999999999876544321                         12345678888899


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  205 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (358)
                      +||+||+|+|...+.+..++  +++.+.++++++|++.+++.+.  ..+.+.+.. .-.++..+.+..+.   ..+++.+
T Consensus        84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~~-~~r~vg~Hf~~p~~---~~~lvev  155 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATGR-PEKFLALHFANEIW---KNNTAEI  155 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcCC-cccEEEEcCCCCCC---cCCeEEE
Confidence            99999999997766655543  5676778888888544443333  234444432 23456554444322   2234444


Q ss_pred             e---cCCHhHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303          206 A---AGDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  280 (358)
Q Consensus       206 ~---~g~~~~~~~v~~ll~~~g~~~~~~g-~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~  280 (358)
                      +   ..+++.++.+.++++.+|+.++.+. + +|      ++.|-+..   ..++|++.++++...++++++.++..+.+
T Consensus       156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg------fi~nRi~~---~~~~ea~~l~~~g~a~~~~iD~a~~~~~g  226 (287)
T PRK08293        156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG------YILNSLLV---PFLSAALALWAKGVADPETIDKTWMIATG  226 (287)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC------HhHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence            3   3488999999999999999998885 4 66      34343333   34579999988877899999999876544

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.69  E-value=3.6e-14  Score=126.89  Aligned_cols=198  Identities=13%  Similarity=0.143  Sum_probs=135.5

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccCCCHHHHhh
Q 018303           71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA  125 (358)
Q Consensus        71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~  125 (358)
                      |+|.|.|+|+.                    |..+|++|.+.|++|++|||++++.     +.+.+.|+..+++..++++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa   80 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK   80 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence            57889999986                    8999999999999999999987644     3467778888989999999


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHH-HH--hcCCeEe---cCCCCCCCCcCCC
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH-IK--ATGASFL---EAPVSGSKKPAED  199 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~-l~--~~~~~~~---~~~~~~~~~~~~~  199 (358)
                      ++|+||+|+|.+.+++.++   ..+++.+++|+++||+|+.+|.......+. |+  +..+.+.   .+.+.+.+..   
T Consensus        81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~---  154 (341)
T TIGR01724        81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH---  154 (341)
T ss_pred             CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC---
Confidence            9999999999999999998   678889999999999999999876555544 33  2333333   2333333321   


Q ss_pred             CceEEEec--------CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Q 018303          200 GQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNV  270 (358)
Q Consensus       200 ~~~~~~~~--------g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~  270 (358)
                       ...++.+        .+++.++++.++.++.++.++.+...-......+. ..+.....+.+.+-...+ +-.|.+.+.
T Consensus       155 -~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~~~t~i~~ap~~~  232 (341)
T TIGR01724       155 -GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYYVGTQIINAPKEM  232 (341)
T ss_pred             -ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence             1111111        17899999999999999998877552112222222 222233333333444443 346666655


Q ss_pred             HHHHHh
Q 018303          271 LVEVVS  276 (358)
Q Consensus       271 ~~~~~~  276 (358)
                      +...+.
T Consensus       233 ~~~~~~  238 (341)
T TIGR01724       233 IEKQIL  238 (341)
T ss_pred             HHHHHH
Confidence            544333

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.69  E-value=1.2e-14  Score=134.25  Aligned_cols=175  Identities=17%  Similarity=0.316  Sum_probs=129.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ..++|+|||+|.||..+++.|...|+  +|.+|||+++..+.+.+.|.  ....+.+++++++|+||+|+| +..+..++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-~~~~~~v~   83 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-VGASGAVA   83 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-HHHHHHHH
Confidence            34689999999999999999999885  89999999887777666654  234577888899999999997 45667777


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCc-CC-------CCceEEEe---cCCHhH
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKP-AE-------DGQLIFLA---AGDKSL  212 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~-~~-------~~~~~~~~---~g~~~~  212 (358)
                         +++.+.++++.+|+++++......+.+.+.+. .++.+++. |+.+.+.. ..       .+..++++   +++++.
T Consensus        84 ---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~  159 (307)
T PRK07502         84 ---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA  159 (307)
T ss_pred             ---HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence               66777789999999998877665555555443 35677775 77764421 11       22233333   347888


Q ss_pred             HHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH
Q 018303          213 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG  248 (358)
Q Consensus       213 ~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~  248 (358)
                      ++.+.++++.+|.+++.+++..+.....++......
T Consensus       160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~  195 (307)
T PRK07502        160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHL  195 (307)
T ss_pred             HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHH
Confidence            999999999999999999887767666666554433

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.69  E-value=7.2e-15  Score=138.33  Aligned_cols=195  Identities=18%  Similarity=0.227  Sum_probs=139.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc----cCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|+|||+|.||.++|+.|++.|++|.+|+++++........+..    ..+++++++++||+||+|+| +..+..++  
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl--   77 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL--   77 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence            379999999999999999999999999999887664433332222    23567788999999999998 56788888  


Q ss_pred             cccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCC--------cCCCCceEEEec---CCHhHH
Q 018303          147 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAA---GDKSLY  213 (358)
Q Consensus       147 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~---g~~~~~  213 (358)
                       +++.+ .++++.+|.|+++.+....+.+.+.+ .....|++ +|+.+.+.        ....+..++++.   .+++.+
T Consensus        78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~  155 (359)
T PRK06545         78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV  155 (359)
T ss_pred             -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence             77766 47899999999998887666665553 34567887 57776532        122344444544   378889


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  277 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  277 (358)
                      +.++++++.+|..++.+++..+.....+++..-....     +++  +...+.+.+...++...
T Consensus       156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~~  212 (359)
T PRK06545        156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAAG  212 (359)
T ss_pred             HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhcc
Confidence            9999999999999999988776777766655544333     222  34445555555555443

>PLN02256 arogenate dehydrogenase

Probab=99.68  E-value=6.3e-15  Score=134.86  Aligned_cols=171  Identities=17%  Similarity=0.181  Sum_probs=129.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..+++|+|||+|.||..+++.|.+.|++|.+|+++.. .+...+.|+....+.++++ .++|+|++|+| +..+..++ 
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl-  109 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL-  109 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH-
Confidence            45668999999999999999999999999999999863 2334445676667888876 46999999997 67888888 


Q ss_pred             ccccc-cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc--CCCCceEEEec-------CCHhHHH
Q 018303          146 GKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYN  214 (358)
Q Consensus       146 ~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~-------g~~~~~~  214 (358)
                        +++ ...++++++|+|+++++....+.+.+.+.. +..++. +|+++.+..  ...+...+...       .+++..+
T Consensus       110 --~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  186 (304)
T PLN02256        110 --RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCE  186 (304)
T ss_pred             --HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHH
Confidence              666 566899999999999887777777777643 445665 477766532  12233333322       2677889


Q ss_pred             HHHHHHHHhcCCeEEeCCcChHHHHHHHH
Q 018303          215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVV  243 (358)
Q Consensus       215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~  243 (358)
                      .+.++++.+|.+++.+.+..+...+..++
T Consensus       187 ~l~~l~~~lGa~v~~~~~eeHD~~vA~iS  215 (304)
T PLN02256        187 RFLDIFEEEGCRMVEMSCEEHDRYAAGSQ  215 (304)
T ss_pred             HHHHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence            99999999999999999877666655443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.67  E-value=2.6e-14  Score=128.52  Aligned_cols=172  Identities=20%  Similarity=0.325  Sum_probs=131.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhCCCccC--CCH-HHHhhcCCEEEEeeCChhhHhhhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQ--PSP-DEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~~--~~~-~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      .++|+|+|+|.||+.+|+.+++.|+.|.+++++...  .+...+.|+...  .+. .+....+|+||++|| -..+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH
Confidence            368999999999999999999999988776665543  333333444321  222 566778999999998 78999999


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCC--CcCCCCceEEEecC---CHhHHHHHHH
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSK--KPAEDGQLIFLAAG---DKSLYNTVAP  218 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g---~~~~~~~v~~  218 (358)
                         +++.+.+++|++|+|+++.+....+++.+.+.+.. .+++. |++|++  .....+..++++..   +.+.++.+.+
T Consensus        82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~  157 (279)
T COG0287          82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR  157 (279)
T ss_pred             ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence               88888999999999999999988888888886656 77764 777773  33334555555543   4568899999


Q ss_pred             HHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 018303          219 LLDIMGKSRFYLGDVGNGAAMKLVVNMI  246 (358)
Q Consensus       219 ll~~~g~~~~~~g~~g~~~~~k~~~n~~  246 (358)
                      +++.+|.+++.+.+..+......++.+-
T Consensus       158 ~~~~~ga~~v~~~~eeHD~~~a~vshLp  185 (279)
T COG0287         158 LWEALGARLVEMDAEEHDRVMAAVSHLP  185 (279)
T ss_pred             HHHHcCCEEEEcChHHHhHHHHHHHHHH
Confidence            9999999999998877677766665443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.67  E-value=6.2e-15  Score=134.53  Aligned_cols=193  Identities=17%  Similarity=0.167  Sum_probs=134.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..++..|++|+++|++++..+.           +.+.|             +...++.++ +++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence            48999999999999999999999999999999887642           22222             233556654 789


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE-
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL-  205 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (358)
                      ||+|++|+|....++..++  +++.+.++++++++..+++.+.  ..+.+.+... -.++....+...+... .. .+. 
T Consensus        83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~P~~~~~-~v-ev~~  155 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFNPVPVMK-LV-EIIR  155 (282)
T ss_pred             CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccCCcccCc-cE-EEeC
Confidence            9999999998777774443  6677778889888544333332  3666666432 2344443333222111 11 122 


Q ss_pred             -ecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303          206 -AAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  280 (358)
Q Consensus       206 -~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~  280 (358)
                       .+.+++..+.+.++++.+|+.++.+++ +|      .+.|-+.   ...++|+..+.++.-.++++++..+..+.+
T Consensus       156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~g  223 (282)
T PRK05808        156 GLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGCN  223 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence             234899999999999999999999987 55      3434333   344679999988866789999998876543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.67  E-value=1.7e-15  Score=138.85  Aligned_cols=189  Identities=17%  Similarity=0.167  Sum_probs=131.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--------------CC-------------CccCCCHHHH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV  123 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------~g-------------~~~~~~~~~~  123 (358)
                      ++|+|||+|.||..+|..++..|++|++||++++..+...+              .+             +...++. +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            48999999999999999999999999999999877653211              11             1234455 56


Q ss_pred             hhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEec-CCCCCCCCcCC
Q 018303          124 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE  198 (358)
Q Consensus       124 ~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~  198 (358)
                      +++||+|++|+|...+.+..++  +++.+.+++++++++.+++.  ....+.+.+...    ++++++ +++....    
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~v----  154 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLI----  154 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccE----
Confidence            7899999999997776555553  55666788889888555543  344566666432    334444 2222211    


Q ss_pred             CCceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          199 DGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       199 ~~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                          -++.+  .+++.++.+.++++.+|+.++.+++.+.....++..|        .++|++.+.++.-.++++++.++.
T Consensus       155 ----Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~  222 (291)
T PRK06035        155 ----EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCK  222 (291)
T ss_pred             ----EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHh
Confidence                11111  2789999999999999999999998443444444433        355888888774468999999987


Q ss_pred             hccc
Q 018303          277 QGAI  280 (358)
Q Consensus       277 ~~~~  280 (358)
                      .+.+
T Consensus       223 ~~~g  226 (291)
T PRK06035        223 LAFG  226 (291)
T ss_pred             hcCC
Confidence            6543

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.67  E-value=6.3e-15  Score=132.66  Aligned_cols=245  Identities=17%  Similarity=0.172  Sum_probs=156.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .|+|+|||+|+||.++++.|.+.+    .+|++++|+.++.      +.....+..++++++|+||+|+| +..++.++ 
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl-   74 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL-   74 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            368999999999999999999876    2489999876542      23345678888899999999995 88999999 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHHh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIM  223 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~~  223 (358)
                        +++.+.++++ .+|.+..+-.  .+.+.+.+......+--.|.  .+.....+...+...  .+++..+.++.+|+.+
T Consensus        75 --~~i~~~l~~~-~iIS~~aGi~--~~~l~~~~~~~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~  147 (260)
T PTZ00431         75 --LEIKPYLGSK-LLISICGGLN--LKTLEEMVGVEAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKVIDIFSAC  147 (260)
T ss_pred             --HHHHhhccCC-EEEEEeCCcc--HHHHHHHcCCCCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHHHHHHHhC
Confidence              7777666654 5554444333  23344444322111111121  222233343333332  2567788999999999


Q ss_pred             cCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-
Q 018303          224 GKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY-  297 (358)
Q Consensus       224 g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~-  297 (358)
                      |..... .+  .....+.--....+.+.++.++.++.   .+.|++.++..+++.++.. ...++..  ..|..+.+.. 
T Consensus       148 G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~---v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~  223 (260)
T PTZ00431        148 GIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAG---VKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVC  223 (260)
T ss_pred             CcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCC
Confidence            986644 44  22222222234555555555555554   8899999999999998643 3333332  2333333333 


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      +||.+...+       ++..++.|+.--+.+++.+..+++.+.
T Consensus       224 spgG~T~~g-------l~~le~~g~~~~~~~a~~aa~~r~~~l  259 (260)
T PTZ00431        224 SPGGITIVG-------LYTLEKHAFKYTVMDAVESACQKSKSM  259 (260)
T ss_pred             CCChHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence            676654443       556678999999999999999888764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.66  E-value=1.1e-14  Score=133.53  Aligned_cols=257  Identities=19%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc------------CCCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------------QPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |||.|+|+|.||+.++..|+..|++|+++.|++. .+.+.+.|+..            .....+....+|+|++++ ++.
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence            5899999999999999999999999999999765 67776654321            112234456899999999 899


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCC--CCCCcCCCCceEEE--ecCCH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVS--GSKKPAEDGQLIFL--AAGDK  210 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~--~~~~~~~~~~~~~~--~~g~~  210 (358)
                      +++.++   +.+.+.+++.+.|+-+-+|....+ .+.+.....    |+...++---  +.......+...+-  .++.+
T Consensus        79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            999999   899999999999998888777665 677766654    1111111111  11111122232221  12244


Q ss_pred             hHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC--CC
Q 018303          211 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVG--LD  267 (358)
Q Consensus       211 ~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G--~~  267 (358)
                      +..+.+.++|+..+..+.+..++-...|.|++.|...+.                     +...+.|...++.+.|  ++
T Consensus       155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~  234 (307)
T COG1893         155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP  234 (307)
T ss_pred             HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence            678888888999999998888888899999999876552                     4568899999999999  45


Q ss_pred             HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          268 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       268 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      .+.+.+.........   ....++|.+ |...+  -+++..   .+.+++.++++|+++|+++.++++++.....
T Consensus       235 ~~~~~~v~~~~~~~~---~~~~sSM~q-Dl~~gr~tEid~i---~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~  302 (307)
T COG1893         235 EEVVERVLAVIRATD---AENYSSMLQ-DLEKGRPTEIDAI---NGAVVRLAKKHGLATPVNDTLYALLKAKEAE  302 (307)
T ss_pred             HHHHHHHHHHHHhcc---cccCchHHH-HHHcCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            533333333211010   011223332 22122  234444   7889999999999999999999999988764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.65  E-value=1.7e-14  Score=132.86  Aligned_cols=258  Identities=15%  Similarity=0.067  Sum_probs=166.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccC-----------CCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |+|+|||+|.||+.+|..|++.|++|++++|+.++.+.+.+. |+...           ....+....+|+|++++ +..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence            689999999999999999999999999999987666656543 32110           11112235789999999 889


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCcCCCCceEEEecC-CHhHH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAG-DKSLY  213 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~  213 (358)
                      ++...+   +.+.+.+.+++.++-+-+|-... +.+.+.+.+..    +.++++...+.-.....+...+..+. +.+..
T Consensus        82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~  157 (305)
T PRK05708         82 DAEPAV---ASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA  157 (305)
T ss_pred             hHHHHH---HHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence            999998   88888899999999887775533 35555554332    11222211111111111111122332 33445


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHH
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS------------------MMATFSEGLLHSEKVGLDP--NVLVE  273 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~------------------~~~~~~Ea~~l~~~~G~~~--~~~~~  273 (358)
                      +.+.++|...|..+....++....|.|++.|...+.                  +..++.|...++++.|++.  +.+.+
T Consensus       158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~  237 (305)
T PRK05708        158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE  237 (305)
T ss_pred             HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence            677788888888777777788899999998864442                  3467889999999999753  22333


Q ss_pred             HHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          274 VVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       274 ~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      .+......   .....++|.+ |...|  -+++.+   .+.++++++++|+++|+++.+.++++....+
T Consensus       238 ~~~~~~~~---~~~~~sSM~q-D~~~gR~tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~  299 (305)
T PRK05708        238 EVQRVIQA---TAANYSSMYQ-DVRAGRRTEISYL---LGYACRAADRHGLPLPRLQHLQQRLVAHLRA  299 (305)
T ss_pred             HHHHHHHh---ccCCCcHHHH-HHHcCCceeehhh---hhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence            32211000   0011223332 22222  234444   7889999999999999999999888776654

>PLN02712 arogenate dehydrogenase

Probab=99.63  E-value=3.3e-14  Score=142.80  Aligned_cols=167  Identities=19%  Similarity=0.246  Sum_probs=123.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..+++|||||+|.||..+|+.|.+.|++|.+|||+... +...+.|+....++++++. .+|+|++|+| +..+..++ 
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi-  442 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL-  442 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH-
Confidence            567789999999999999999999999999999998543 4444567766778888876 5899999998 67889988 


Q ss_pred             ccccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCC---ceE----EEecCCH---hHH
Q 018303          146 GKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDG---QLI----FLAAGDK---SLY  213 (358)
Q Consensus       146 ~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~---~~~----~~~~g~~---~~~  213 (358)
                        .++.. .+++|++|+|+++++....+.+.+.+. .+..++ .+|+++.+... .|   ...    .+++++.   +..
T Consensus       443 --~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~  518 (667)
T PLN02712        443 --KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRC  518 (667)
T ss_pred             --HHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHH
Confidence              55543 588999999999998666656665554 356677 67888876431 11   111    1223433   344


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHH
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMK  240 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k  240 (358)
                      +.+..+++.+|.+++.+....+...+.
T Consensus       519 ~~l~~l~~~lGa~vv~ms~eeHD~~~A  545 (667)
T PLN02712        519 DSFLDIFAREGCRMVEMSCAEHDWHAA  545 (667)
T ss_pred             HHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence            556689999999999988877564443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.63  E-value=1.3e-14  Score=131.82  Aligned_cols=247  Identities=12%  Similarity=0.138  Sum_probs=156.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCcc-chhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~-~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++|+|||+|+||.++++.|...|    ++|.+|+|+.+ +.+.+...  +.....+..++++++|+||+|+| +..+..+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence            58999999999999999999888    78999998653 33333332  23445678888999999999997 7888888


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHH
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLL  220 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll  220 (358)
                      +   +++.+.++++++||.+..|-..  +.+.+.+...  .++. .|..  +.....+...+..+.  +++..+.++.+|
T Consensus        81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~~--~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~~l~  151 (277)
T PRK06928         81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPGL--QVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSRLEETL  151 (277)
T ss_pred             H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCCC--CEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence            8   7777778888899988776444  3576666421  2222 2322  122233433333332  567788999999


Q ss_pred             HHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcccc-chhhh--cccccccc
Q 018303          221 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVSQGAIS-APMYS--LKGPSMIE  294 (358)
Q Consensus       221 ~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~~~~~~-s~~~~--~~~~~~~~  294 (358)
                      +.+|..... .+  .....++--....+.+.++.++.++   +.+. |++.++..+++.++... ..++.  ...|..+.
T Consensus       152 ~~~G~~~~v-~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~  227 (277)
T PRK06928        152 SHFSHVMTI-REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTI  227 (277)
T ss_pred             HhCCCEEEE-chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence            999986643 33  2212222222334444444444444   3676 79999999999976432 33332  13344444


Q ss_pred             CCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          295 SLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       295 ~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      +.. +||.+...+       ++..++ |++--+.+++.+..++...
T Consensus       228 ~~v~spgGtT~~g-------l~~le~-~~~~~~~~~~~~a~~r~~~  265 (277)
T PRK06928        228 ERVATKGGITAEG-------AEVIQA-QLPQFFDELLDRTQKKYAS  265 (277)
T ss_pred             HhCCCCChHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            343 566654443       334444 7777777777777776665

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.62  E-value=2.1e-14  Score=128.45  Aligned_cols=197  Identities=17%  Similarity=0.194  Sum_probs=131.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC---c-EEEEcCC-ccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~---~-V~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ..+||+|||+|+||.+++..+...|.   + +.+++|+ +++.+.+.+ .++..+.+.+++++++|+|++++| +...+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHHH
Confidence            34689999999999999999988763   3 6778874 566666554 366667788899999999999997 667788


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe--cCCHhHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPLL  220 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~ll  220 (358)
                      ++   +++.+.++ +++||+++.+-...  .+.+.+..........|.+..  ....+...+..  ..+++..+.++.+|
T Consensus        82 v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf  153 (245)
T PRK07634         82 LL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLIL  153 (245)
T ss_pred             HH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHH
Confidence            87   66655554 67899887665443  466666432222234454332  22223222222  34788889999999


Q ss_pred             HHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303          221 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  278 (358)
Q Consensus       221 ~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  278 (358)
                      +.+|..++ +.+  .....+.--....+...++.++.++   +.+.|+++++..+++.+.
T Consensus       154 ~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~  209 (245)
T PRK07634        154 KGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM  209 (245)
T ss_pred             HhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence            99998885 444  2222222223334444454444444   588999999999988875

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.62  E-value=1e-14  Score=123.13  Aligned_cols=168  Identities=21%  Similarity=0.244  Sum_probs=115.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~-g-~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +|+|+|+|+|+||..+|++|...||+|++-+|+.++ .+...+. + .....+++++.+.+|+|++++| ......++  
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP-~~a~~~v~--   77 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP-FEAIPDVL--   77 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc-HHHHHhHH--
Confidence            378999999999999999999999999998665443 3333221 1 1224578899999999999998 56778887  


Q ss_pred             cccccccCCCCCEEEEccCCC---------------hhHHHHHHHHHHhcCC----eEecCCCCCCCCcCCCCceEEEec
Q 018303          147 KHGAASGMGPGKGYVDVSTVD---------------GDTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~---------------~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                       +++...+. |++|||++..-               ....+.+.+.+++..+    +-+.+..+...........+++++
T Consensus        78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag  155 (211)
T COG2085          78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG  155 (211)
T ss_pred             -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence             77777765 99999997741               1123344444443311    111222222222222345567788


Q ss_pred             CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 018303          208 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV  242 (358)
Q Consensus       208 g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~  242 (358)
                      +|+++.+.+.++.+.+|+.++.+|+...+..+.-.
T Consensus       156 DD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~  190 (211)
T COG2085         156 DDAEAKAVVAELAEDIGFRPLDAGPLENARILEPG  190 (211)
T ss_pred             CcHHHHHHHHHHHHhcCcceeeccccccccccccc
Confidence            89999999999999999999999996545444333

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.61  E-value=5.9e-14  Score=128.49  Aligned_cols=196  Identities=16%  Similarity=0.160  Sum_probs=128.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+.+++|||||+|+||.++|+.|+..|++|.+++++..+. +...+.|+... +..+++++||+|++++|.. ....++ 
T Consensus        14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~-   90 (330)
T PRK05479         14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVY-   90 (330)
T ss_pred             hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHH-
Confidence            5677899999999999999999999999999887764433 33344566654 8999999999999999854 457777 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCC-----cCCCCceEEE-ecCC--HhHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-----PAEDGQLIFL-AAGD--KSLYNTV  216 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~-~~g~--~~~~~~v  216 (358)
                       ++++++.+++|++|+-+ .|.....  +. .....++.++- +|......     ....|...++ +..+  .++.+.+
T Consensus        91 -~~~I~~~Lk~g~iL~~a-~G~~i~~--~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a  165 (330)
T PRK05479         91 -EEEIEPNLKEGAALAFA-HGFNIHF--GQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLA  165 (330)
T ss_pred             -HHHHHhcCCCCCEEEEC-CCCChhh--ce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHH
Confidence             46688889999988544 4433222  11 11122333332 23322220     0233444444 4444  7888999


Q ss_pred             HHHHHHhcCCeE-----EeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          217 APLLDIMGKSRF-----YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       217 ~~ll~~~g~~~~-----~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      ..+++++|....     .+.+ ..+...-.  ...+.+.+..++..++..+.+.|.+|+.++
T Consensus       166 ~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay  225 (330)
T PRK05479        166 LAYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY  225 (330)
T ss_pred             HHHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999998753     2222 11111111  334555666777788888899999998765

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.57  E-value=7.5e-14  Score=122.51  Aligned_cols=169  Identities=17%  Similarity=0.204  Sum_probs=117.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------CC---ccCCCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GA---KYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~---~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |+|+||| +|+||+.+++.|.+.|++|.+++|++++.+.+.+.        +.   ....+..+.++++|+||+++| +.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence            5899997 89999999999999999999999998776654431        21   112366788899999999996 77


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhH---------------HHHHHHHHHhcCCeEecC-C-----CCCCCCcC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-P-----VSGSKKPA  197 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-~-----~~~~~~~~  197 (358)
                      ....++   +++...+. +++||+++.+...+               .+.+.+.+.. +..++.+ +     +... ...
T Consensus        80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~  153 (219)
T TIGR01915        80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD  153 (219)
T ss_pred             HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence            788887   55544454 58999997775431               1345555532 1233332 1     1222 112


Q ss_pred             CCCceEEEecCCHhHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHH
Q 018303          198 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMI  246 (358)
Q Consensus       198 ~~~~~~~~~~g~~~~~~~v~~ll~~~-g~~~~~~g~~g~~~~~k~~~n~~  246 (358)
                      ..+...+++++++++.+.+..+.+.+ |+.++++|+...+..+.-...++
T Consensus       154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~  203 (219)
T TIGR01915       154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLL  203 (219)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHH
Confidence            22344567777888999999999999 99999999977555554443333

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02712 arogenate dehydrogenase

Probab=99.57  E-value=2.8e-13  Score=136.18  Aligned_cols=171  Identities=16%  Similarity=0.207  Sum_probs=125.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +.+.++|||||+|.||+.+|+.|.+.|++|.+|+++... +...+.|+....++++++ +++|+|++|+| +..+..++ 
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl-  125 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL-  125 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH-
Confidence            455679999999999999999999999999999998443 444556777777888866 56999999998 67899998 


Q ss_pred             cccccc-ccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc--CCCCceEEEe----cCCH---hHHH
Q 018303          146 GKHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYN  214 (358)
Q Consensus       146 ~~~~~~-~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~----~g~~---~~~~  214 (358)
                        .++. ..++++++|+|+++......+.+.+.+.. +..++. +|++|.+..  ...+...++.    +.++   +..+
T Consensus       126 --~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  202 (667)
T PLN02712        126 --KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCK  202 (667)
T ss_pred             --HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHH
Confidence              6654 56899999999998887666666666643 445665 588877632  1122223333    2222   3456


Q ss_pred             HHHHHHHHhcCCeEEeCCcChHHHHHHHH
Q 018303          215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVV  243 (358)
Q Consensus       215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~  243 (358)
                      .+.++++.+|.+++.+....+......++
T Consensus       203 ~l~~l~~~lGa~v~~ms~eeHD~~~A~vs  231 (667)
T PLN02712        203 SFLEVFEREGCKMVEMSCTEHDKYAAESQ  231 (667)
T ss_pred             HHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence            77799999999999998877565555544

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.56  E-value=2.3e-13  Score=123.01  Aligned_cols=193  Identities=14%  Similarity=0.176  Sum_probs=139.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..+|..++..|++|.++|++++..+...           +.             .+....++. .+++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~   82 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD   82 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence            5899999999999999999998899999999966543321           11             133344444 6789


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      ||+||.++|...++++-+|  .++-...++++++-..+++-+.  ..+.+.+. +.-.++..+.|..++..   +++-++
T Consensus        83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~i--t~ia~~~~-rper~iG~HFfNP~~~m---~LVEvI  154 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSI--TELAEALK-RPERFIGLHFFNPVPLM---PLVEVI  154 (307)
T ss_pred             CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCH--HHHHHHhC-CchhEEEEeccCCCCcc---eeEEEe
Confidence            9999999999999998775  6666677888888744443333  35666663 33345555555544332   233333


Q ss_pred             cC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303          207 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  281 (358)
Q Consensus       207 ~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  281 (358)
                      .|   +++.++.+.++.+.+|+.++...+ +|      ++.|-+....   +.|+..+.++...++++++.++..+.+.
T Consensus       155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil~~~---~~eA~~l~~eGva~~e~ID~~~~~~~G~  224 (307)
T COG1250         155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLLAAL---LNEAIRLLEEGVATPEEIDAAMRQGLGL  224 (307)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHHHHH---HHHHHHHHHhCCCCHHHHHHHHHhccCC
Confidence            33   789999999999999988877677 77      5555554443   5699988888889999999999986544

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.53  E-value=4.8e-13  Score=120.74  Aligned_cols=198  Identities=17%  Similarity=0.142  Sum_probs=124.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|||||+|+||+++|++|+.+|++|+++++.....+.....|... .+++|+++.||+|++++|+ +++++++  
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~--   88 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVY--   88 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHH--
Confidence            67889999999999999999999999999999987654444444556655 4899999999999999997 5668888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEEec--C-CHhHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFLAA--G-DKSLYNTVA  217 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~--g-~~~~~~~v~  217 (358)
                      ++++++.|++|++++-. .+.-+...   ...+..++.++ -+|--.+...     ...|.+.++.-  + +..+.+.+-
T Consensus        89 ~~eil~~MK~GaiL~f~-hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~al  164 (335)
T PRK13403         89 KAEVEENLREGQMLLFS-HGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVAL  164 (335)
T ss_pred             HHHHHhcCCCCCEEEEC-CCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHH
Confidence            57799999999987643 33322111   11112233222 1222111111     11233333321  1 345677778


Q ss_pred             HHHHHhcCCe--EEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          218 PLLDIMGKSR--FYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       218 ~ll~~~g~~~--~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      ....++|..-  +.-.......-..+.  ...+.+.+..++.-.+..+.+.|.+|+.++
T Consensus       165 a~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay  223 (335)
T PRK13403        165 AYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY  223 (335)
T ss_pred             HHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            8888888762  222222212222222  224455555666666677789999998665

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.52  E-value=1.4e-12  Score=121.82  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=118.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHH-CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .++|+|||+ |.||+.+|+.|++ .|++|+++|++.+           ...++.+.+++||+||+|+| ...+..++   
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l---   68 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI---   68 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH---
Confidence            469999999 9999999999986 5889999998521           12467788999999999998 77888888   


Q ss_pred             cccccc---CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc-CCCCceEEEecC-CHhHHHHHHHHHH
Q 018303          148 HGAASG---MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAG-DKSLYNTVAPLLD  221 (358)
Q Consensus       148 ~~~~~~---l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~v~~ll~  221 (358)
                      +++.+.   ++++++|.|+++.+....+.+.    ..+..|++ +|++|.+.. .-.+..++++.+ ..+..+.++.+++
T Consensus        69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~  144 (370)
T PRK08818         69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS  144 (370)
T ss_pred             HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence            666654   7999999999999865554442    22446776 477777533 234555555554 4455788999999


Q ss_pred             HhcCCeEEeCCcChHHHHHHHH
Q 018303          222 IMGKSRFYLGDVGNGAAMKLVV  243 (358)
Q Consensus       222 ~~g~~~~~~g~~g~~~~~k~~~  243 (358)
                      .+|.+++.+.+..+......++
T Consensus       145 ~~Ga~v~~~~aeeHD~~~A~vS  166 (370)
T PRK08818        145 ALQAECVYATPEHHDRVMALVQ  166 (370)
T ss_pred             HcCCEEEEcCHHHHHHHHHHHH
Confidence            9999999999988777777775

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.52  E-value=1.2e-12  Score=134.79  Aligned_cols=183  Identities=17%  Similarity=0.256  Sum_probs=134.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|+|||+|.||..+++.+...|  ++|.+||+++++.+.+.+.|..  ...+..++++++|+|++|+| +..+..++  
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl--   80 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL--   80 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH--
Confidence            48999999999999999999988  4799999998887766666653  34567888999999999997 56888888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc--------CCCCceEEEec---CCHhHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP--------AEDGQLIFLAA---GDKSLYN  214 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~  214 (358)
                       +++.+.++++.+|+++++.+....+.+.+.+....+.++ ++|+.+.+..        .-.+..++++.   .+++..+
T Consensus        81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~  159 (735)
T PRK14806         81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA  159 (735)
T ss_pred             -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence             777777889999999999887777777777654455554 5677655431        11222333333   3677889


Q ss_pred             HHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL  258 (358)
Q Consensus       215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~  258 (358)
                      .+.++++.+|..++.+++..+.....+++.. -+.....+.|++
T Consensus       160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~-ph~~~~~l~~~l  202 (735)
T PRK14806        160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHL-PHLLAFSLVDQL  202 (735)
T ss_pred             HHHHHHHHcCCEEEEcCHHHHhHHHHHhcch-HHHHHHHHHHHH
Confidence            9999999999989888876655555444433 333334445554

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.49  E-value=7.1e-13  Score=134.93  Aligned_cols=190  Identities=15%  Similarity=0.125  Sum_probs=139.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..||..++..|++|.++|++++..+...           +.             .+.+..+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            6899999999999999999999999999999987654321           11             244556664 4689


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      ||+||.++|...++++-+|  .++-+.+++++++...+++-+++  .+.+.+.. .-.++..+.+..++..   +++-++
T Consensus       393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv  464 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISIS--LLAKALKR-PENFCGMHFFNPVHRM---PLVEVI  464 (715)
T ss_pred             CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCC-CccEEEEecCCccccc---ceEEee
Confidence            9999999999999998885  66777788998887555544443  46666543 2346665555444332   233333


Q ss_pred             c---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303          207 A---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  279 (358)
                      .   .+++.++.+..+++.+|+.++.+.+ +|      ++.|-+...   .++|++.+.++ |.++++++.++..+.
T Consensus       465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~---~~~ea~~lv~~-Ga~~e~ID~a~~~~~  531 (715)
T PRK11730        465 RGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFAGFSQLLRD-GADFRQIDKVMEKQF  531 (715)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHHhhC
Confidence            3   3789999999999999999999988 77      555555443   35698888876 599999999987643

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.49  E-value=7.8e-13  Score=121.86  Aligned_cols=181  Identities=18%  Similarity=0.171  Sum_probs=132.9

Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccch-------hh-----------HHhC-------------CCccCCC--HHHHhhcC
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DP-----------LISL-------------GAKYQPS--PDEVAASC  127 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~-----------~~~~-------------g~~~~~~--~~~~~~~a  127 (358)
                      ||..||..++..|++|.++|++++..       +.           +.+.             .+.+..+  ..+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            79999999999999999999998531       11           1111             1333333  56788999


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCceE
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI  203 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~  203 (358)
                      |+||.++|.+.+++..+|  .++.+.+++++++.  |+.+......+.+.+..    .++||+++|...        +++
T Consensus        81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~lv  148 (314)
T PRK08269         81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PLV  148 (314)
T ss_pred             CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccC--------ceE
Confidence            999999999999999986  55777889999885  55555556677777643    245555554221        122


Q ss_pred             EEe---cCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303          204 FLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI  280 (358)
Q Consensus       204 ~~~---~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~  280 (358)
                      -++   .++++.++.+.++++.+|+.++++++.+ +       +.+...+...++|++.++++.++++++++.++..+.+
T Consensus       149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G  220 (314)
T PRK08269        149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG  220 (314)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            222   3488999999999999999999999844 2       2344455667889999999999999999999987654


Q ss_pred             c
Q 018303          281 S  281 (358)
Q Consensus       281 ~  281 (358)
                      .
T Consensus       221 ~  221 (314)
T PRK08269        221 L  221 (314)
T ss_pred             C
Confidence            3

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.48  E-value=1.1e-12  Score=133.37  Aligned_cols=191  Identities=15%  Similarity=0.123  Sum_probs=139.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA  125 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~  125 (358)
                      -++|+|||+|.||..||..++..|++|.++|++++..+...           +.             .+....+++ .++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD  391 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            36899999999999999999999999999999987654321           11             244556664 468


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  205 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (358)
                      +||+||.++|...+++.-+|  .++-+.+++++++...+++-++  ..+.+.+.. .-.++..+.+..++..   +++-+
T Consensus       392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~-p~r~ig~Hff~P~~~~---~lvEv  463 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEV  463 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-cccEEEEecCCCcccC---ceEee
Confidence            99999999999999988775  6677788899988755444444  346666543 2345665555444322   23333


Q ss_pred             ec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303          206 AA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       206 ~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  279 (358)
                      +.   .+++.++.+..+++.+|+.++.+.+ +|      ++.|-+...   .+.|+..+.++ |.++++++.++..+.
T Consensus       464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~~---~~~ea~~l~~e-G~~~~~ID~a~~~~~  531 (714)
T TIGR02437       464 IRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFGGFSKLLRD-GADFVRIDKVMEKQF  531 (714)
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHHH---HHHHHHHHHHC-CCCHHHHHHHHHhcC
Confidence            33   3789999999999999999999988 77      555555443   35699888865 699999999987643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.48  E-value=2.1e-12  Score=118.58  Aligned_cols=195  Identities=15%  Similarity=0.120  Sum_probs=122.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC-ccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+++|||||+|+||.++|+.|...|++|+++++. .+..+.+.+.|+... +..+++++||+|++++|...+...+.   
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---   77 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---   77 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---
Confidence            4579999999999999999999999998876544 344455556677654 68889999999999998543555444   


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEE-ecC--CHhHHHHHHH
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAP  218 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~-~~g--~~~~~~~v~~  218 (358)
                      +++.+.++++. +|..+.|-....  +...+.. +..++ -+|.......     ...|...++ ...  +.+..+.+..
T Consensus        78 ~ei~~~l~~g~-iVs~aaG~~i~~--~~~~~~~-~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~  153 (314)
T TIGR00465        78 AEIQPLLKEGK-TLGFSHGFNIHF--VQIVPPK-DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA  153 (314)
T ss_pred             HHHHhhCCCCc-EEEEeCCccHhh--ccccCCC-CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence            66777788886 666666655432  3333432 23333 3343322210     034444443 332  5677889999


Q ss_pred             HHHHhcCC-------eE--EeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303          219 LLDIMGKS-------RF--YLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  278 (358)
Q Consensus       219 ll~~~g~~-------~~--~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  278 (358)
                      +++.+|..       .+  .+.+  .+...+  ++.  -....+..+.|++   .+.|++++.++..+.+.
T Consensus       154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~G--s~pa~v~~~~eal---v~~G~~~e~A~~~~~~~  217 (314)
T TIGR00465       154 YAKAIGGGRAGVLETTFKEETESDLFGEQAV--LCG--GLTALIKAGFDTL---VEAGYQPELAYFETVHE  217 (314)
T ss_pred             HHHHcCCCccceeechhHhhhhHHhcCcchh--HHh--HHHHHHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence            99999987       21  1111  221111  111  1112223333665   79999999999887764

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.46  E-value=1.7e-13  Score=116.24  Aligned_cols=152  Identities=14%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C-------------CCccCCCHHHHhhcC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC  127 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a  127 (358)
                      +|+|||+|.||..+|..++..|++|.+||++++..+...+           .             .+.+.++++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999999876543211           1             245678898888 99


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                      |+||.++|...+.+.-+|  +++-+.++++++|...+++-+..  .+.+.+... -.++..+.+.++..   .+++-++.
T Consensus        80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p-~R~ig~Hf~~P~~~---~~lVEvv~  151 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRP-ERFIGMHFFNPPHL---MPLVEVVP  151 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTG-GGEEEEEE-SSTTT-----EEEEEE
T ss_pred             heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcC-ceEEEEeccccccc---CceEEEeC
Confidence            999999999998888775  67777888999888665555443  455555332 23444444432221   12232222


Q ss_pred             ---CCHhHHHHHHHHHHHhcCCeEEeCC
Q 018303          208 ---GDKSLYNTVAPLLDIMGKSRFYLGD  232 (358)
Q Consensus       208 ---g~~~~~~~v~~ll~~~g~~~~~~g~  232 (358)
                         .+++.++.+..+++.+|+.++.+.+
T Consensus       152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  152 GPKTSPETVDRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence               3789999999999999999988743

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.45  E-value=2.4e-13  Score=114.39  Aligned_cols=196  Identities=13%  Similarity=0.136  Sum_probs=140.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C------------------CCccC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQ  117 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~------------------g~~~~  117 (358)
                      ....+.|+|||+|.||+.||+..+..|++|.++|++.+...+..+           .                  .+...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            345568999999999999999999999999999999876544321           0                  12346


Q ss_pred             CCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecC-CCCC
Q 018303          118 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEA-PVSG  192 (358)
Q Consensus       118 ~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~-~~~~  192 (358)
                      ++..+++.++|+||.++-.+..++.-+|  +++-...++.+++.  ++.+......+...+++.    |.||+.. |++.
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~--tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMK  163 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA--TNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMK  163 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe--ecccceeHHHHHhhccChhhhceeeccCCchhHH
Confidence            6788889999999999988888887775  45555566677666  333333334555555442    5555543 3332


Q ss_pred             CCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303          193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  271 (358)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~  271 (358)
                      ..      ..+--...+++.+..+..+-+.+|+.++-+.+ +|     -+++.++...+    .|++++.++...+.+++
T Consensus       164 Lv------EVir~~~TS~eTf~~l~~f~k~~gKttVackDtpG-----FIVNRlLiPyl----~ea~r~yerGdAskeDI  228 (298)
T KOG2304|consen  164 LV------EVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPG-----FIVNRLLIPYL----MEAIRMYERGDASKEDI  228 (298)
T ss_pred             Hh------hhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCc-----hhhhHHHHHHH----HHHHHHHHhcCCcHhhH
Confidence            22      11111123688999999999999999999998 88     34455555544    49999999999999999


Q ss_pred             HHHHhhcccc
Q 018303          272 VEVVSQGAIS  281 (358)
Q Consensus       272 ~~~~~~~~~~  281 (358)
                      +..+..+++.
T Consensus       229 DtaMklGagy  238 (298)
T KOG2304|consen  229 DTAMKLGAGY  238 (298)
T ss_pred             HHHHhccCCC
Confidence            9999987665

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.45  E-value=1.9e-12  Score=131.83  Aligned_cols=187  Identities=15%  Similarity=0.117  Sum_probs=136.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||..||..++..|++|.++|++++..+...           +.             .+..+.+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999999987654321           11             244556775 5689


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      ||+||.++|...+++.-+|  .++-+.+++++++...+++-++  ..+.+.+... -.++..+.+..++..   +++-++
T Consensus       415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p-~r~ig~Hff~P~~~m---~LvEvv  486 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPI--KDIAAVSSRP-EKVIGMHYFSPVDKM---QLLEII  486 (737)
T ss_pred             CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCc-cceEEEeccCCcccC---ceEEEe
Confidence            9999999999999998775  6677778899888744443333  4566665432 245555555433322   233333


Q ss_pred             c---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          207 A---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      .   .+++.++.+..+++.+|+.++.+++ +|      ++.|-+..   ..++|+..+.++ |+++++++.++.
T Consensus       487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~~~~ID~a~~  550 (737)
T TIGR02441       487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVDPKKLDKLTT  550 (737)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            3   3789999999999999999999988 77      55554443   346798888765 789999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.45  E-value=2.5e-12  Score=130.64  Aligned_cols=188  Identities=13%  Similarity=0.103  Sum_probs=135.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHH-HCCCcEEEEcCCccchhhHH-----------h-------------CCCccCCCHHHHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------S-------------LGAKYQPSPDEVA  124 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~~~~-----------~-------------~g~~~~~~~~~~~  124 (358)
                      .++|+|||+|.||..+|..++ ..|++|.++|++++..+...           +             ..+...++++ .+
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  382 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GF  382 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence            368999999999999999998 58999999999987543321           1             1244556664 57


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  204 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (358)
                      ++||+||.++|...+++.-+|  .++-+..++++++...+++-+++  .+.+.+... -.++..+.+..++..   +++-
T Consensus       383 ~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~~g~HffnP~~~~---~lVE  454 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPIG--QIAAAASRP-ENVIGLHYFSPVEKM---PLVE  454 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCc-ccEEEEecCCccccC---ceEE
Confidence            899999999999999998775  66777788888887554444443  466665432 245555555443322   2333


Q ss_pred             Eec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          205 LAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       205 ~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      ++.   .+++.++.+..+++.+|+.++.+.+ +|      ++.|-+..   ..++|+..+.+ .|+++++++.++.
T Consensus       455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~---~~~~Ea~~l~~-~G~~~~dID~a~~  520 (699)
T TIGR02440       455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRILA---PYMNEAARLLL-EGEPVEHIDKALV  520 (699)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHHH---HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            333   3789999999999999999999987 66      44444443   34569988877 4689999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.44  E-value=3e-12  Score=130.38  Aligned_cols=188  Identities=14%  Similarity=0.108  Sum_probs=137.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHH-HCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVA  124 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~  124 (358)
                      -++|+|||+|.||..+|..++ ..|++|.++|++++..+...           +.             .+..++++ +.+
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~  387 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF  387 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence            368999999999999999998 88999999999877544321           11             24455666 457


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  204 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (358)
                      ++||+||.++|...+++.-+|  +++-+.++|++++...+++-+++  .+.+.+... -.++..+.+..+...   +++-
T Consensus       388 ~~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~ig~Hff~P~~~~---~lVE  459 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIG--QIAAAAARP-EQVIGLHYFSPVEKM---PLVE  459 (708)
T ss_pred             ccCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcc-cceEEEecCCccccC---ceEE
Confidence            899999999999999988775  66777789999888555554443  466665432 356666555444322   2333


Q ss_pred             Eec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          205 LAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       205 ~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      ++.   .+++.++.+..+++.+|+.++.+.+ +|      ++.|-+...   .++|+..++++ |+++++++.++.
T Consensus       460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~~---~~~EA~~lv~e-Gv~~~dID~a~~  525 (708)
T PRK11154        460 VIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRILAP---YINEAARLLLE-GEPIEHIDAALV  525 (708)
T ss_pred             EECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence            333   3789999999999999999999877 77      444544443   35699888776 789999998876

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.44  E-value=1.7e-13  Score=104.16  Aligned_cols=90  Identities=26%  Similarity=0.427  Sum_probs=75.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC---CcEEE-EcCCccchhhHHhC-CCccCC-CHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLISL-GAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g---~~V~~-~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ||||||+|+||.++++.|.+.|   ++|.+ ++|++++.+.+.+. +..... +..|+++++|+|++|+| +....+++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence            6999999999999999999999   89995 59999988877554 555455 89999999999999995 88999998 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                        +++ ....+++++|++..+
T Consensus        79 --~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 --SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             --HHH-HHHHTTSEEEEESTT
T ss_pred             --HHH-hhccCCCEEEEeCCC
Confidence              777 777899999998653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.41  E-value=4.8e-13  Score=111.07  Aligned_cols=136  Identities=17%  Similarity=0.266  Sum_probs=98.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ||+|||.|++|.++|..|+..|++|.+|.|+++..+.+.+.              .+..++|++++++++|+|++++| +
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence            69999999999999999999999999999998777766542              13457789999999999999997 7


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCC-h----hHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHh
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-G----DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS  211 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  211 (358)
                      ...+.++   +++.+.++++..+|.++.|- .    ...+.+.+.+....+.++..|.+..+..........+.+.+++
T Consensus        80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~  155 (157)
T PF01210_consen   80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE  155 (157)
T ss_dssp             GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred             HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence            7889999   88999999999999997764 1    2344556666555577788888766655444444445555543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.40  E-value=7.6e-13  Score=125.79  Aligned_cols=104  Identities=15%  Similarity=0.098  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|||+|.||+.+|++++.+|++|+++++++.+.......|+.. .+++++++.+|+|++|+.    +++++  
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI--  323 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII--  323 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc--
Confidence            46678999999999999999999999999999999877654444456554 478999999999999973    56777  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA  180 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~  180 (358)
                      +.+.+..|++|++++|++++.   .+...+.+..
T Consensus       324 ~~e~~~~MKpGAiLINvGr~d---~Ei~i~aL~~  354 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHFD---NEIQVAELEA  354 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCCc---hHHhHHHHHh
Confidence            567889999999999999984   3344455554

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.37  E-value=2e-11  Score=109.77  Aligned_cols=157  Identities=20%  Similarity=0.302  Sum_probs=112.3

Q ss_pred             HHHHHHHCC--CcEEEEcCCccchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           85 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        85 ~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      +|+.|++.|  ++|.++|++++..+...+.|+.... +..+.++++|+||+|+| ...+..++   +++.+.+++|++|+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~   76 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence            578898888  7899999999887777666654321 22578899999999998 77899999   88888899999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecC-CCCCCC--------CcCCCCceEEEecC---CHhHHHHHHHHHHHhcCCeEE
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEA-PVSGSK--------KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      |+++.+....+.+.+.+. .+..|++. |++|.+        ...-.+..++++.+   +++.++.+..+++.+|.+++.
T Consensus        77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~  155 (258)
T PF02153_consen   77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE  155 (258)
T ss_dssp             E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred             EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            999999988888888776 56677764 777773        23334666666643   467889999999999999999


Q ss_pred             eCCcChHHHHHHHHHHH
Q 018303          230 LGDVGNGAAMKLVVNMI  246 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~  246 (358)
                      +....+.....+++.+-
T Consensus       156 ~~~eeHD~~~A~vshlp  172 (258)
T PF02153_consen  156 MDAEEHDRIMAYVSHLP  172 (258)
T ss_dssp             --HHHHHHHHHHHTHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            87777666666665443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.37  E-value=7.1e-13  Score=104.82  Aligned_cols=111  Identities=24%  Similarity=0.372  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ...++|+|||+|++|..+++.|.+.|++|.. |+|+....+.+... +.....+++|+++++|++++++| +..+..+. 
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavp-DdaI~~va-   85 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVP-DDAIAEVA-   85 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S--CCHHHHHH-
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEec-hHHHHHHH-
Confidence            4457999999999999999999999999875 67887666655543 33445578899999999999998 45888888 


Q ss_pred             cccccccc--CCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303          146 GKHGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       146 ~~~~~~~~--l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                        +++...  .++|++|+.||.....+   +.+.+.+.|...
T Consensus        86 --~~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~~  122 (127)
T PF10727_consen   86 --EQLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAIV  122 (127)
T ss_dssp             --HHHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-EE
T ss_pred             --HHHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCeE
Confidence              777766  78999999998876654   334455555443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.35  E-value=7.3e-12  Score=106.50  Aligned_cols=121  Identities=21%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+.                    ...+.++..+.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            699999999999999999999999999999999877765421                    235567888889999999


Q ss_pred             EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHH-HHHHhcC-----CeEecCCCCCCC
Q 018303          131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN-GHIKATG-----ASFLEAPVSGSK  194 (358)
Q Consensus       131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~-~~l~~~~-----~~~~~~~~~~~~  194 (358)
                      ++|+|.+.         .++.++   +.+.+.++++++||.-|+..|...+.+. ..+.+.+     ..+..+|.+-.+
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~  156 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE  156 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred             EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence            99998553         245555   6777888999999999999999988554 4444433     355566765443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.34  E-value=5.4e-11  Score=109.15  Aligned_cols=243  Identities=18%  Similarity=0.166  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           80 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        80 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .||..+|..|+..|++|.+++|+ +..+.+.+.|+.              ..+++++ ...+|+|++++ +..+++.++ 
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l-   76 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAA-   76 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHH-
Confidence            38999999999999999999997 445556544421              1223344 56899999999 477899988 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC----eEecCCCCCCC--CcCCCCceEEEecC---CHhHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSK--KPAEDGQLIFLAAG---DKSLYNTV  216 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g---~~~~~~~v  216 (358)
                        +.+.+.+.++++|+.+.+|-.. .+.+.+.+....+    .+..+-..+..  .....+..  .++.   ..+..+.+
T Consensus        77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~--~iG~~~~~~~~~~~l  151 (293)
T TIGR00745        77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGAT--KIGDYVGENEAVEAL  151 (293)
T ss_pred             --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccE--EEecCCCchHHHHHH
Confidence              7888888899999988777543 3455555543221    11111111111  11111222  2222   22445677


Q ss_pred             HHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCH--HHHHH
Q 018303          217 APLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG---------------------SMMATFSEGLLHSEKVGLDP--NVLVE  273 (358)
Q Consensus       217 ~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G~~~--~~~~~  273 (358)
                      .++|+..+..+....+.....|.|++.|...+                     .+..++.|+..++++.|+++  +.+.+
T Consensus       152 ~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~  231 (293)
T TIGR00745       152 AELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEE  231 (293)
T ss_pred             HHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            78888888888888888889999999886433                     23467899999999999753  33444


Q ss_pred             HHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          274 VVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       274 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      .+.......+   ...++|.+ |+..|.  +++.+   .+.++++++++|+++|.++.++++++...
T Consensus       232 ~~~~~~~~~~---~~~sSm~~-D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~e  291 (293)
T TIGR00745       232 LVRAVIRMTA---ENTSSMLQ-DLLRGRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALLKALE  291 (293)
T ss_pred             HHHHHHhcCC---CCCChHHH-HHHcCCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence            4433110000   01123332 222222  34444   78899999999999999999999887643

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.27  E-value=1.1e-10  Score=104.09  Aligned_cols=225  Identities=16%  Similarity=0.188  Sum_probs=147.4

Q ss_pred             CcEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHH
Q 018303           94 CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK  172 (358)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~  172 (358)
                      ++|.+++|++++.+.+.+ .|+....+..++++++|+||+|++ +..++.++   +++...+.++++||+++.+-+.  +
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~--~   83 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTL--E   83 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCH--H
Confidence            679999999888777655 377777888899999999999996 89999998   7776656778899988776555  4


Q ss_pred             HHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHH
Q 018303          173 LINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIM  247 (358)
Q Consensus       173 ~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~~~~~~g~--~g~~~~~k~~~n~~~  247 (358)
                      .+.+.+... ..++- .|..  +.....+...+..+.  +++..+.++.+|+.+|..+ .+.+  .......--....+.
T Consensus        84 ~l~~~~~~~-~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~E~~~~~~talsgsgPA~~  159 (245)
T TIGR00112        84 KLSQLLGGT-RRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV-ELPEALMDAVTALSGSGPAYV  159 (245)
T ss_pred             HHHHHcCCC-CeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhccCcHHHH
Confidence            466666432 12332 2322  222233433333332  5667789999999999765 4444  332333333445555


Q ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCC
Q 018303          248 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQS  323 (358)
Q Consensus       248 ~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~  323 (358)
                      +.++..+.++   +.+.|+++++..+++.++.. ...++..  ..+..+.... .||.+...       .++..++.|+.
T Consensus       160 ~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~-------gl~~Le~~~~~  229 (245)
T TIGR00112       160 FLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIA-------GLAVLEEKGVR  229 (245)
T ss_pred             HHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHH-------HHHHHHHCChH
Confidence            5565555554   48899999999999998643 3333322  2233222232 56554444       45667788999


Q ss_pred             chHHHHHHHHHHHHH
Q 018303          324 TPIAAAANELYKVAK  338 (358)
Q Consensus       324 ~p~~~a~~~~~~~a~  338 (358)
                      --+.+++.+.++++.
T Consensus       230 ~~~~~a~~aa~~r~~  244 (245)
T TIGR00112       230 GAVIEAVEAAVRRSR  244 (245)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            889888888887764

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.27  E-value=2.3e-10  Score=102.11  Aligned_cols=158  Identities=16%  Similarity=0.180  Sum_probs=119.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      .+|||||+|+||+.+|..+...||.|+.++|+. .-......|...++.+.++++ .+|+|++|+ ....++.++   +.
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil---at  127 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL---AT  127 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---Hh
Confidence            589999999999999999999999999999975 323334457777788888875 599999999 688899998   55


Q ss_pred             cccc-CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCC---ceEEE--ecC----CHhHHHHHHH
Q 018303          150 AASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDG---QLIFL--AAG----DKSLYNTVAP  218 (358)
Q Consensus       150 ~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~---~~~~~--~~g----~~~~~~~v~~  218 (358)
                      +-.+ ++.|+++++..+...-....+.+.|++. ...+.+ |++|........   +.++.  -.|    .++..+.+.+
T Consensus       128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle  206 (480)
T KOG2380|consen  128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE  206 (480)
T ss_pred             cCchhhccceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence            5444 8999999999888887777888888653 455544 666665333222   22221  123    3678899999


Q ss_pred             HHHHhcCCeEEeCCcC
Q 018303          219 LLDIMGKSRFYLGDVG  234 (358)
Q Consensus       219 ll~~~g~~~~~~g~~g  234 (358)
                      ++...|++.+++.-..
T Consensus       207 If~cegckmVemS~ee  222 (480)
T KOG2380|consen  207 IFACEGCKMVEMSYEE  222 (480)
T ss_pred             HHHhcCCeEEEEEeec
Confidence            9999999999886533

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.24  E-value=3.7e-11  Score=109.28  Aligned_cols=113  Identities=20%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++++|||+|.||+.+|+.|+.+|++|++++|++++.+...+.+...  ..++.++++++|+||.++|.+     ++
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii  222 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL  222 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh
Confidence            56678999999999999999999999999999999987665555545432  235678889999999999864     33


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                        +++.++.++++.++||++..+....  + +..++.|+..+-+|
T Consensus       223 --~~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~  262 (287)
T TIGR02853       223 --TADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP  262 (287)
T ss_pred             --CHHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence              3455678899999999988654432  3 45667777766544

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.23  E-value=2.7e-09  Score=91.80  Aligned_cols=197  Identities=16%  Similarity=0.233  Sum_probs=140.3

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccCCCHHHHhh
Q 018303           71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA  125 (358)
Q Consensus        71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~  125 (358)
                      |+|.|+|+|+.                    |..+|-.++..||+|...+++.+-.     ++..+.|+..++|-.++++
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~   81 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE   81 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence            68889999886                    8889999999999999999876543     3455669999999999999


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhH-HHHHHHHHHhc----CCe-EecCCCCCCCCcCCC
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT----GAS-FLEAPVSGSKKPAED  199 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-~~~l~~~l~~~----~~~-~~~~~~~~~~~~~~~  199 (358)
                      .+.+.++.+|....|-.+.   .++++.++.|+++.|+++.+|.. ...|...|+..    |+. +..+.+.|.+.   +
T Consensus        82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h  155 (340)
T COG4007          82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H  155 (340)
T ss_pred             cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence            9999999999999999999   99999999999999999998764 23344444332    222 22233444432   2


Q ss_pred             CceEEEec----C----CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Q 018303          200 GQLIFLAA----G----DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNV  270 (358)
Q Consensus       200 ~~~~~~~~----g----~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~  270 (358)
                      +.. ++.+    |    .++.+++..+++++.|+.++.+.. ..-.+..-....+....+.++.+-+.+..+ .|.+.+.
T Consensus       156 ~~y-viagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eM  233 (340)
T COG4007         156 GHY-VIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEM  233 (340)
T ss_pred             ceE-EEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            222 2222    1    688899999999999999877663 223333333445555566666677766653 6777776


Q ss_pred             HHHHH
Q 018303          271 LVEVV  275 (358)
Q Consensus       271 ~~~~~  275 (358)
                      +.+-+
T Consensus       234 IekQi  238 (340)
T COG4007         234 IEKQI  238 (340)
T ss_pred             HHHHH
Confidence            65443

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.16  E-value=2e-09  Score=93.00  Aligned_cols=252  Identities=16%  Similarity=0.192  Sum_probs=163.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhh-HHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      |++|+||.|+|..++++.+.+.|.    ++..+..+...... +...|+..+.+..+.++.+|++++++ ++..++.++ 
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl-   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL-   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence            479999999999999999998884    56666663333333 55567777767789999999999999 788999998 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIM  223 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~  223 (358)
                        .++-..+..+++++.+.-|....  .+...+. ....++.. +...+.....+..++..+.  ..+..+.++.++..+
T Consensus        79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~v  152 (267)
T KOG3124|consen   79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAV  152 (267)
T ss_pred             --hcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhc
Confidence              66666678889999887665554  3555554 11222221 1112223333443333332  566678999999999


Q ss_pred             cCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhc--cccccccCCC-
Q 018303          224 GKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSL--KGPSMIESLY-  297 (358)
Q Consensus       224 g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~~~~--~~~~~~~~~~-  297 (358)
                      |+..- +.+  +.....+--....+.+.++.++.+.   .-+.|++++..+++..++. |...+...  -.|..++++. 
T Consensus       153 G~~~e-vpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~  228 (267)
T KOG3124|consen  153 GLCEE-VPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC  228 (267)
T ss_pred             Cccee-CcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence            97542 222  1111111111223344444333333   3789999999999988763 44444332  2466777666 


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      +|+.+...       .+...|+-|++..+.+++.+.-.++++.|
T Consensus       229 SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~  265 (267)
T KOG3124|consen  229 SPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG  265 (267)
T ss_pred             CCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence            57654443       35677788999999999999999888754

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.14  E-value=1.6e-10  Score=93.84  Aligned_cols=90  Identities=27%  Similarity=0.283  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ++++|+|||+|+.|.+.|..|+..|.+|++..|... ..+...+.|... .+..|+++.+|+|++.+| +.....++  .
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~P-D~~q~~vy--~   78 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLP-DEVQPEVY--E   78 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S--HHHHHHHH--H
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCC-hHHHHHHH--H
Confidence            467999999999999999999999999999888766 556666778775 489999999999999998 45556666  4


Q ss_pred             ccccccCCCCCEEEE
Q 018303          148 HGAASGMGPGKGYVD  162 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~  162 (358)
                      +++.+.|++|++++-
T Consensus        79 ~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   79 EEIAPNLKPGATLVF   93 (165)
T ss_dssp             HHHHHHS-TT-EEEE
T ss_pred             HHHHhhCCCCCEEEe
Confidence            778889999998773

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02494 adenosylhomocysteinase

Probab=99.13  E-value=1.8e-10  Score=109.49  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|+|+|.||+.+|++++.+|++|+++++++.+.......|.... +++++++.+|+|+.++.    +++++  
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI--  323 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII--  323 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--
Confidence            367899999999999999999999999999999999876555555566543 78899999999998653    45555  


Q ss_pred             cccccccCCCCCEEEEccC-CChhHHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVST-VDGDTSKLINGH  177 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~  177 (358)
                      +.+.+..|++|++++|+++ +..++..+|.+.
T Consensus       324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            4667789999999999999 568888888876

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.13  E-value=3.7e-10  Score=102.06  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH--CCCcEE-EEcCCccchhhHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~--~g~~V~-~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      +..+||||||+|+||+.+++.+..  .++++. ++||++++.+.+.+. + ...+.+++++++++|+|++|+|.... ..
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e   82 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA   82 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence            345799999999999999999986  377776 789998877665543 4 34567899999999999999985443 44


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      +.   .   ..++.|+.++..+.+...+.+++.+..++++..+
T Consensus        83 ~~---~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l  119 (271)
T PRK13302         83 IV---E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI  119 (271)
T ss_pred             HH---H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence            43   2   3456788888788777777889999998887764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.13  E-value=2.6e-10  Score=94.42  Aligned_cols=115  Identities=21%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CC----ccCCCHHHHhhcCCEEEEeeCChhh-H
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA----KYQPSPDEVAASCDVTFAMLADPES-A  140 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~aDivi~~vp~~~~-~  140 (358)
                      ..+++|+|+|+|.||..+++.+...| .+|.+++|++++.+.+.+. +.    ....+..++++++|+|++++|.+.. .
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~   96 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG   96 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence            44579999999999999999999986 7899999998877665433 22    2345777878999999999986654 3


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      +...+.    ...++++.+++|++..+...  .+.+.+++.|+.+++.
T Consensus        97 ~~~~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g  138 (155)
T cd01065          97 DELPLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG  138 (155)
T ss_pred             CCCCCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence            333311    12368999999998875544  7888888888777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=99.10  E-value=6.9e-09  Score=91.92  Aligned_cols=244  Identities=16%  Similarity=0.174  Sum_probs=167.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--CCCcEEEEcCCccchhhHH-------------------hCCCccCCCHHHHhhcCCE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLI-------------------SLGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~aDi  129 (358)
                      ++|.-||+|.+|......++-  -..+|.++|.+..+...+.                   ..+..+.++.+..++++|+
T Consensus         2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl   81 (481)
T KOG2666|consen    2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL   81 (481)
T ss_pred             ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence            589999999999887666543  2357888988876654332                   1245677899999999999


Q ss_pred             EEEeeCChhhHhhhhccc-----------ccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCe--EecCCCCCCC
Q 018303          130 TFAMLADPESAMDVACGK-----------HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS--FLEAPVSGSK  194 (358)
Q Consensus       130 vi~~vp~~~~~~~~~~~~-----------~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~--~~~~~~~~~~  194 (358)
                      |++.+..+..+..+=.|.           .-+.+.-...++++.-|+.++...+.+...+...  ++.  .++.|.|-.+
T Consensus        82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae  161 (481)
T KOG2666|consen   82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE  161 (481)
T ss_pred             EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence            999997665554332100           1122334567899999999999999998888532  443  4555655332


Q ss_pred             CcC---CCCceEEEecC--CHhHHHHH---HHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018303          195 KPA---EDGQLIFLAAG--DKSLYNTV---APLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG  265 (358)
Q Consensus       195 ~~~---~~~~~~~~~~g--~~~~~~~v---~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G  265 (358)
                      ..+   -..+--+++||  .++..+.+   ..+.+.+- ..-+.....-+.+..|++.|.+++--+..++...++|++.|
T Consensus       162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg  241 (481)
T KOG2666|consen  162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG  241 (481)
T ss_pred             cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            211   12233355666  34444444   44455543 22345556777999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 018303          266 LDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS  323 (358)
Q Consensus       266 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~  323 (358)
                      .|.+++..++...+.       .++.+++  .+-||....++||+-..+-+.+-+|+|
T Consensus       242 adv~eva~avg~d~r-------ig~kfl~--asvgfggscfqkdilnlvyice~lnlp  290 (481)
T KOG2666|consen  242 ADVSEVAYAVGTDSR-------IGSKFLN--ASVGFGGSCFQKDILNLVYICECLNLP  290 (481)
T ss_pred             CCHHHHHHHhccccc-------ccHHHhh--cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence            999999887775431       1222332  244677788999999999999999887

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.09  E-value=5.8e-10  Score=105.23  Aligned_cols=107  Identities=16%  Similarity=0.071  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|+|+|.+|+.+|+.++.+|++|+++++++.+.......|... .+++++++.+|+||.+++    +++++  
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG----~~~vI--  264 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATG----NKDVI--  264 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCC----CHHHH--
Confidence            36788999999999999999999999999999999887655555556644 367889999999998774    35555  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHHHHHh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKA  180 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~  180 (358)
                      +.+.+..|++|++++|.++... ++.++|.+.+.+
T Consensus       265 ~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~  299 (406)
T TIGR00936       265 RGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE  299 (406)
T ss_pred             HHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence            3456788999999999999886 888888887654

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06444 prephenate dehydrogenase; Provisional

Probab=99.01  E-value=5.3e-08  Score=83.27  Aligned_cols=129  Identities=13%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |+|+|||. |.||+.+++.|.+.|+.|.                          +++||+|++|+| ...+..++   ++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~   50 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES   50 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence            58999988 9999999999999999985                          368999999998 66777777   44


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCC-CceEEEec--CCHhHHHHHHHHHHHhcC
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK  225 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~--g~~~~~~~v~~ll~~~g~  225 (358)
                      +.      .+++|+++.+....    +.    ...+++. |++|....... ....+++.  .+++..+.++.+++  |.
T Consensus        51 ~~------~~v~Dv~SvK~~i~----~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~  114 (197)
T PRK06444         51 YD------NNFVEISSVKWPFK----KY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY  114 (197)
T ss_pred             hC------CeEEeccccCHHHH----Hh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence            42      37999998877422    21    2356764 77763332211 12333332  25666788899988  78


Q ss_pred             CeEEeCCcChHHHHHHHHHH
Q 018303          226 SRFYLGDVGNGAAMKLVVNM  245 (358)
Q Consensus       226 ~~~~~g~~g~~~~~k~~~n~  245 (358)
                      +++.+.+..+......++.+
T Consensus       115 ~~~~~t~eeHD~~~A~ishL  134 (197)
T PRK06444        115 HFVEMTADEHDLLMSEIMVK  134 (197)
T ss_pred             EEEEeCHHHHHHHHHHHHHH
Confidence            88888887777777666544

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.96  E-value=3e-08  Score=89.10  Aligned_cols=277  Identities=14%  Similarity=0.075  Sum_probs=156.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHC-------CCcEEEEcCCccchh---hHHh------------------CCCccCCC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------------------LGAKYQPS  119 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~-------g~~V~~~~~~~~~~~---~~~~------------------~g~~~~~~  119 (358)
                      ....+|+|||.|++|+++|+.+...       ..+|..|-+......   .+.+                  .++..++|
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            3446999999999999999998752       235666654322111   1211                  12456789


Q ss_pred             HHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh---------HHHHHHHHHHhcCCeEecCCC
Q 018303          120 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---------TSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       120 ~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~---------~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      +.++++++|++|..+| .+.+..++   +++...++++...|.++-|-..         ..+.+.+++. -...++..+.
T Consensus        99 l~ea~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaN  173 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGAN  173 (372)
T ss_pred             HHHHhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCc
Confidence            9999999999999998 78999999   8999999999999998655321         1223333331 1334565555


Q ss_pred             CCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcCCeEEeCCcC---hHHHHHHH--------------HHHHHHHHHH
Q 018303          191 SGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVG---NGAAMKLV--------------VNMIMGSMMA  252 (358)
Q Consensus       191 ~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~~~~~~g~~g---~~~~~k~~--------------~n~~~~~~~~  252 (358)
                      +..+.....-.-..+.+. +.+.-..+..+|+.-.+.++...+..   .+-++|-+              +|.-.+.+..
T Consensus       174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~  253 (372)
T KOG2711|consen  174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRL  253 (372)
T ss_pred             hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHh
Confidence            544433222222222222 33333358888888877777766622   22223322              2334444556


Q ss_pred             HHHHHHHHHHHc-CC-CHHHHH------HHHhhcccc--chhhh---ccccccccCCC--CCCCchhhHHHHHHHHHHHH
Q 018303          253 TFSEGLLHSEKV-GL-DPNVLV------EVVSQGAIS--APMYS---LKGPSMIESLY--PTAFPLKHQQKDLRLALGLA  317 (358)
Q Consensus       253 ~~~Ea~~l~~~~-G~-~~~~~~------~~~~~~~~~--s~~~~---~~~~~~~~~~~--~~~~~~~~~~kd~~~~~~~a  317 (358)
                      .+.|+..+++.. .- .++.+.      +++....+.  .+..+   ..+..+...+.  -.|. ...+.-..+.+.+++
T Consensus       254 Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L  332 (372)
T KOG2711|consen  254 GLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELL  332 (372)
T ss_pred             hHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHH
Confidence            667777666652 22 233222      222222111  11111   00110000000  0110 111233357788899


Q ss_pred             HhcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          318 ESVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       318 ~~~gi--~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      ++.++  ..|+..++++++.       ++....++++.++.+
T Consensus       333 ~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~  367 (372)
T KOG2711|consen  333 QKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH  367 (372)
T ss_pred             HHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence            99998  7899999988774       344677788777653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.94  E-value=4.3e-09  Score=96.32  Aligned_cols=112  Identities=22%  Similarity=0.268  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--CCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      .+.+++++|||+|.+|+.++..|+.+|.+|++++|++++.+.....|....  .++.+.++++|+||.++|..     ++
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i  223 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL  223 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh
Confidence            456789999999999999999999999999999999877666555565433  35678889999999999742     23


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                        +++.++.|+++.++||++.......  + +..+..|+..+.+
T Consensus       224 --~~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~  262 (296)
T PRK08306        224 --TKEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA  262 (296)
T ss_pred             --hHHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence              3555678999999999977553322  2 3445566665543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.91  E-value=2.9e-09  Score=87.08  Aligned_cols=95  Identities=19%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.++++.|+|+|.+|+.+|+.|+..|.+|++++++|-+.-+....|.... +++++++.+|++|.++..    ++++  
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~----~~vi--   92 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGN----KDVI--   92 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSS----SSSB--
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCC----cccc--
Confidence            567889999999999999999999999999999999876655555677654 799999999999998853    3344  


Q ss_pred             cccccccCCCCCEEEEccCCCh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      ..+.+..||+|+++.|.+....
T Consensus        93 ~~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   93 TGEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             -HHHHHHS-TTEEEEESSSSTT
T ss_pred             CHHHHHHhcCCeEEeccCcCce
Confidence            3455678999999999976544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.90  E-value=1.1e-08  Score=88.16  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+|+|+|+|+|+||+.+|+.|.+.|++|+++|+++++.+.+.+. +.... +.++++. +||+++.|....     ++
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~~~-----~I   98 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCALGG-----VI   98 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccccc-----cc
Confidence            5777899999999999999999999999999999998877766554 55544 3455554 799999776432     33


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                        +++.++.++ ..+|+.-+++...+ ..-.+.|+++|+.+++
T Consensus        99 --~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P  137 (200)
T cd01075          99 --NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP  137 (200)
T ss_pred             --CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence              344445554 56788777765544 5677888899998875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.89  E-value=3.3e-08  Score=93.08  Aligned_cols=200  Identities=15%  Similarity=0.091  Sum_probs=116.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC------ccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      .+.+++|+|||+|++|.+.|..|+..|++|.+--|.      .+..+.+.+.|..+ .++.|+++.||+|++.+|++ . 
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~-  109 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q-  109 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-
Confidence            577899999999999999999999999999855443      23444444567654 68999999999999999977 4 


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEEe-c---C-C
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFLA-A---G-D  209 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~-~---g-~  209 (358)
                      ++.+  .+++++.|++|+++.- |.|--+...   ......++.++ -+|--.+...     ...|.+.++. -   + +
T Consensus       110 q~~v--~~~i~p~LK~Ga~L~f-sHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~  183 (487)
T PRK05225        110 HSDV--VRAVQPLMKQGAALGY-SHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPK  183 (487)
T ss_pred             HHHH--HHHHHhhCCCCCEEEe-cCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCC
Confidence            5555  3889999999998763 344332211   11111233322 2232222211     1123333322 2   1 3


Q ss_pred             HhHHHHHHHHHHHhcCC--eEEeCCcChHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Q 018303          210 KSLYNTVAPLLDIMGKS--RFYLGDVGNGAAMKLV-VNMIMGSMMATFSE-GLLHSEKVGLDPNVLVEVV  275 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~--~~~~g~~g~~~~~k~~-~n~~~~~~~~~~~E-a~~l~~~~G~~~~~~~~~~  275 (358)
                      ..+.+.+.....++|..  .+.-..........+. .+.++...++...+ .+..+.+.|.+|+.++..+
T Consensus       184 g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~  253 (487)
T PRK05225        184 GEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLI  253 (487)
T ss_pred             chHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            45677777888888876  1222222111112222 22223333322222 2333577899999887533

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.89  E-value=7.9e-09  Score=98.16  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=81.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|+|+|.||+.+|+.++.+|++|+++++++.+.......|... .+++++++.+|+||.++.    +.+++  
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI--  281 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVI--  281 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHH--
Confidence            35778999999999999999999999999999999987765555556554 478899999999998874    24455  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLING  176 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~  176 (358)
                      +.+.+..|++|++++|.++... .+...+.+
T Consensus       282 ~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        282 TAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            3456788999999999988764 34444443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.85  E-value=1.8e-08  Score=90.86  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=78.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCc-EEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      |+|||||+|.||+.+++.+...  +++ +.++|+++++.+.+.+ .+...+.++++++.++|+|++|+| +.......  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~-~~~~~~~~--   78 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS-VNAVEEVV--   78 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC-hHHHHHHH--
Confidence            6899999999999999999875  455 4579999887766554 355667889999899999999997 44555554  


Q ss_pred             cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCCe
Q 018303          147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS  184 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~  184 (358)
                       ..   .++.|+.++..+.+   .....+.+.+..++.+..
T Consensus        79 -~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         79 -PK---SLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             -HH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence             33   34567767766654   334456788888777754

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=98.84  E-value=1.4e-09  Score=98.33  Aligned_cols=158  Identities=11%  Similarity=0.020  Sum_probs=122.8

Q ss_pred             CCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCCc
Q 018303           16 SSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCD   95 (358)
Q Consensus        16 ~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~~   95 (358)
                      ++.-++-+++++.|+-+...+..++|.|.........        ...-....++.+.|++|+|+.|++++.+...+|+.
T Consensus       132 ~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e--------~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~  203 (435)
T KOG0067|consen  132 TADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVRE--------AACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFV  203 (435)
T ss_pred             HHHHHHHHHHhhhcccchhhhhhcccceeechhhhhh--------hhhccccccccceeeeccccccceehhhhhcccce
Confidence            3344455666778888888888999988754321100        00001156778999999999999999999999999


Q ss_pred             EEEEcCCccchhhHH-hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           96 VTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        96 V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      |+.||+....  -+. ..|...+.+++|++-++|-+.+++..++..++++  +.--..+|+.|..++|++++..+++.+|
T Consensus       204 ~ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta~gglvdekaL  279 (435)
T KOG0067|consen  204 VIFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTARGGLVDEKAL  279 (435)
T ss_pred             eeeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeecccccCChHHH
Confidence            9999975332  111 2356667789999999999999999999999999  6666788999999999999999999999


Q ss_pred             HHHHHhcCCeE
Q 018303          175 NGHIKATGASF  185 (358)
Q Consensus       175 ~~~l~~~~~~~  185 (358)
                      .++|+++.++.
T Consensus       280 aqaLk~G~i~~  290 (435)
T KOG0067|consen  280 AQALKSGRIRG  290 (435)
T ss_pred             HhhhccCceec
Confidence            99999876663

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.78  E-value=2.8e-08  Score=89.84  Aligned_cols=77  Identities=27%  Similarity=0.383  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.+++|+|||.| .||+.+|..|.+.|++|++|++...              ++.++.++||+||++++.+..++..+ 
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~-  220 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW-  220 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-
Confidence            6789999999996 9999999999999999999987532              68899999999999998765444332 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                              +++|+++||++..
T Consensus       221 --------ik~GaiVIDvgin  233 (301)
T PRK14194        221 --------LKPGAVVIDVGIN  233 (301)
T ss_pred             --------ccCCcEEEEeccc
Confidence                    7899999999753

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.73  E-value=9.4e-08  Score=90.68  Aligned_cols=94  Identities=17%  Similarity=0.091  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|+|+|.||..+++.++.+|.+|+++++++.+.+.....|+... +.+++++.+|+||.++..    .+++  
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~----~~~i--  271 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGN----KDII--  271 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCC----HHHH--
Confidence            457889999999999999999999999999999999888777777777544 567888999999998853    3344  


Q ss_pred             cccccccCCCCCEEEEccCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      +...+..+++|.+++|+++..
T Consensus       272 ~~~~l~~mk~GgilvnvG~~~  292 (413)
T cd00401         272 TGEHFEQMKDGAIVCNIGHFD  292 (413)
T ss_pred             HHHHHhcCCCCcEEEEeCCCC
Confidence            244467899999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.71  E-value=4.1e-08  Score=90.84  Aligned_cols=111  Identities=14%  Similarity=0.219  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ...++|+|||+|.||..+++.+.. .+ .+|.+|+|++++.+.+.+.    +  +....+.++++++||+|+.++|.+  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            345799999999999999986654 44 6899999999887776553    3  445678899999999998888743  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       +.++   .  .+.+++|+ +||+.........++...+..+...|+|
T Consensus       201 -~pvl---~--~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD  241 (314)
T PRK06141        201 -EPLV---R--GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD  241 (314)
T ss_pred             -CCEe---c--HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence             4555   1  14578998 5555555444444555555444334444

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.70  E-value=6.4e-07  Score=76.13  Aligned_cols=197  Identities=15%  Similarity=0.117  Sum_probs=132.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC--------------CccCCCHHHHhhc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVAAS  126 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~~~  126 (358)
                      +|+|+|.|.+|+..|-.++..|++|..||..++.....           .+.|              +..+.+++|+.++
T Consensus         5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~   84 (313)
T KOG2305|consen    5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG   84 (313)
T ss_pred             ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence            79999999999999999999999999999987654321           1111              3457799999999


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      +=.|-.|+|..-..+.-+|  +++-+...+..++- .|+ +......+.+.+.++.-..+.+|+...-    .-+++-++
T Consensus        85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~~tIla-SST-St~mpS~~s~gL~~k~q~lvaHPvNPPy----fiPLvElV  156 (313)
T KOG2305|consen   85 AIHIQECVPEDLNLKKQLY--KQLDEIADPTTILA-SST-STFMPSKFSAGLINKEQCLVAHPVNPPY----FIPLVELV  156 (313)
T ss_pred             hhhHHhhchHhhHHHHHHH--HHHHHhcCCceEEe-ccc-cccChHHHhhhhhhhhheeEecCCCCCc----ccchheec
Confidence            9999999998888877763  44444444444443 333 3333334555555544345555543210    01111111


Q ss_pred             c---CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303          207 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  283 (358)
Q Consensus       207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~  283 (358)
                      .   .+++.+++..++.+.+|.+++.....-.+    ++.|-+-   .+.++|..+++...++...+++..++++.|...
T Consensus       157 PaPwTsp~tVdrt~~lM~sigq~pV~l~rei~G----f~lnriq---~Ailne~wrLvasGil~v~dvD~VmS~GLG~RY  229 (313)
T KOG2305|consen  157 PAPWTSPDTVDRTRALMRSIGQEPVTLKREILG----FALNRIQ---YAILNETWRLVASGILNVNDVDAVMSAGLGPRY  229 (313)
T ss_pred             cCCCCChhHHHHHHHHHHHhCCCCccccccccc----ceecccc---HHHHHHHHHHHHccCcchhhHHHHHhcCCCcch
Confidence            1   36888999999999999988876652212    2223333   345679999999999999999999998765543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.68  E-value=1.4e-07  Score=74.50  Aligned_cols=108  Identities=17%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHH-hCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLI-SLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      ++|||||+|.+|+.....+...  ++++. ++|+++++.+.+. ..++..++|.+++++  +.|+|++++|.....+.+.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            3799999999999999998876  45554 6899988777654 357888899999998  6999999998655554443


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|..++.-  -.....+.+++.+..++.+..+
T Consensus        81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~  116 (120)
T PF01408_consen   81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV  116 (120)
T ss_dssp             -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred             -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence                   334556655544  2346677788888888776543

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.65  E-value=2.7e-08  Score=80.37  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCC------CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG------AKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      +++++++.|||+|.+|+.++..|...|.+ |++++|+.++.+.+.+.-      ....+++.+.+.++|+||.++|.+..
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            56788999999999999999999999987 999999998887776531      22345677778999999999986543


Q ss_pred             HhhhhcccccccccCCCC-CEEEEccC
Q 018303          140 AMDVACGKHGAASGMGPG-KGYVDVST  165 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~-~~vi~~s~  165 (358)
                         .+  .++.+....+. .+++|++.
T Consensus        89 ---~i--~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   89 ---II--TEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             ---SS--THHHHTTTCHHCSEEEES-S
T ss_pred             ---cc--CHHHHHHHHhhhhceecccc
Confidence               33  23333333222 48999964

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.60  E-value=1.6e-07  Score=83.24  Aligned_cols=197  Identities=17%  Similarity=0.186  Sum_probs=114.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      -+.+++|+|||+|+.|.+-|..|+..|.+|++--|.... .+...+.|..+ .+.+|+++.+|+|++.+| +..-..++ 
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~P-De~q~~vy-   91 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLP-DEQQKEVY-   91 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCc-hhhHHHHH-
Confidence            356789999999999999999999999999987765444 45556667775 489999999999999998 45556666 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCC-----cCCCCceEEEec--C-CHhHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKK-----PAEDGQLIFLAA--G-DKSLYNTV  216 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~--g-~~~~~~~v  216 (358)
                       .+++.+.|++|+.+. -+.|.-+....+   .....+.++ -+|-..+..     ....|.+.++.-  + +-.+.+.+
T Consensus        92 -~~~I~p~Lk~G~aL~-FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~A  166 (338)
T COG0059          92 -EKEIAPNLKEGAALG-FAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIA  166 (338)
T ss_pred             -HHHhhhhhcCCceEE-eccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHH
Confidence             357888899998553 344433222111   111222222 222211111     112233333322  1 34567777


Q ss_pred             HHHHHHhcCC---eEEeCCcChHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          217 APLLDIMGKS---RFYLGDVGNGAAMKLV-VN-MIMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       217 ~~ll~~~g~~---~~~~g~~g~~~~~k~~-~n-~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      ......+|..   ++.. ......-..+. .+ .+.+.+..++.-++..+.+.|.+|+.++
T Consensus       167 la~AkgiGg~RaGvieT-TFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~Ay  226 (338)
T COG0059         167 LAYAKGIGGTRAGVIET-TFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAY  226 (338)
T ss_pred             HHHHHhcCCCccceEee-eeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            7888888743   2211 11100111111 11 2223334444455555678898887554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.60  E-value=2.2e-07  Score=84.27  Aligned_cols=76  Identities=30%  Similarity=0.378  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEc-CCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++|+||| .|.||..+|..|.+.|++|++|+ |++               ++++++++||+|+++++.+..++.. 
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~-  218 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD-  218 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence            57899999999 99999999999999999999995 543               4678899999999999876543332 


Q ss_pred             cccccccccCCCCCEEEEccCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                              .+++|+++||++..
T Consensus       219 --------~lk~GavVIDvGin  232 (296)
T PRK14188        219 --------WIKPGATVIDVGIN  232 (296)
T ss_pred             --------eecCCCEEEEcCCc
Confidence                    27899999999753

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.59  E-value=8.8e-08  Score=78.89  Aligned_cols=101  Identities=19%  Similarity=0.308  Sum_probs=76.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--------------CCHHHHhhcCCEEEEeeCChh
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |.|+|+|.||..+|..|++.|++|.++.|++ ..+.+.+.|+...              .+..+....+|+|++|+ +..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence            7899999999999999999999999999987 6666665543221              11224567899999999 789


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK  179 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~  179 (358)
                      +++.++   +.+.+.+.+++.++-..++... .+.+.+.+.
T Consensus        79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~~  115 (151)
T PF02558_consen   79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYFP  115 (151)
T ss_dssp             GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHST
T ss_pred             chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHcC
Confidence            999999   7788888888888877777543 345655553

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.53  E-value=5.1e-07  Score=76.78  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCc-EEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|||||+|.||+.+.+.+...  +++ +.+||++.++...+... +....++++|++++.|+++.|. .+++++...  
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~--   77 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV--   77 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence            4799999999999999999853  343 77899999888766543 4445589999999999999999 578888777  


Q ss_pred             cccccccCCCCCEEEEccCCChhHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                       .   +.|+.|.-+|-+|.|...++
T Consensus        78 -~---~~L~~g~d~iV~SVGALad~   98 (255)
T COG1712          78 -P---KILKAGIDVIVMSVGALADE   98 (255)
T ss_pred             -H---HHHhcCCCEEEEechhccCh
Confidence             3   34567776666677766644

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.53  E-value=1.9e-07  Score=88.18  Aligned_cols=96  Identities=22%  Similarity=0.315  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCc---cC---CCHHHHhhcCCEEEEeeCCh-hh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK---YQ---PSPDEVAASCDVTFAMLADP-ES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~---~~---~~~~~~~~~aDivi~~vp~~-~~  139 (358)
                      ....+|.|||+|.+|...++.+...|.+|.++|+++++.+.+... +..   ..   .++.+.++++|+||.+++.+ ..
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            456789999999999999999999999999999998776665432 221   11   24566788999999998532 22


Q ss_pred             HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ...++  +++.+..|+++.+|||++-
T Consensus       245 ~p~li--t~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       245 APKLV--SNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             CCcCc--CHHHHhcCCCCCEEEEEec
Confidence            34445  4667788999999999974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.49  E-value=2.6e-07  Score=85.38  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ..+++|+|||+|.||..+++.+...| .+|++++|++++...+.+. |...  .+++.+.+.++|+||.++|.+.. ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            46789999999999999999998865 6899999998876655543 4322  23456778899999999985543 444


Q ss_pred             hcccccccccC-CCCCEEEEccC
Q 018303          144 ACGKHGAASGM-GPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l-~~~~~vi~~s~  165 (358)
                      +   +...... .++.++||++.
T Consensus       255 ~---~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         255 V---ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             H---HHHHhhCCCCCeEEEEeCC
Confidence            4   3332222 36789999975

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.47  E-value=7.2e-07  Score=80.86  Aligned_cols=115  Identities=24%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHH-hhcCCEEEEeeCChh--hH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SA  140 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivi~~vp~~~--~~  140 (358)
                      ..++++.|+|+|.+|++++..|...|++|.+++|++++.+.+.+.    +.....+.++. ..++|+||.++|...  ..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            346789999999999999999999999999999998776655432    21112233333 357999999998642  12


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      ....+    ....++++.+++|++..++.+  .+.+..++.|..+++.
T Consensus       195 ~~~~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG  236 (270)
T TIGR00507       195 DEPPV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG  236 (270)
T ss_pred             CCCCC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence            11110    124578899999998877655  4777777777766653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.44  E-value=8.3e-07  Score=79.76  Aligned_cols=77  Identities=23%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.+++|+|||. |.||..+|..|.+.|+.|++|...              +.++.+.+++||+||.+++.+..++..  
T Consensus       155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~--  218 (284)
T PRK14179        155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE--  218 (284)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH--
Confidence            578899999999 999999999999999999999321              126788999999999999876554433  


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                             .+++|+++||++..
T Consensus       219 -------~ik~GavVIDvgin  232 (284)
T PRK14179        219 -------FVKEGAVVIDVGMN  232 (284)
T ss_pred             -------HccCCcEEEEecce
Confidence                   38899999999744

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.44  E-value=8.2e-07  Score=83.11  Aligned_cols=109  Identities=21%  Similarity=0.306  Sum_probs=81.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCC---C-------ccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---A-------KYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g---~-------~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      +|+|.|||+|.+|+.+|..|++.| .+|++.||+.++++++....   +       .-...+.+++++.|+||.+.| +.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p-~~   79 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP-PF   79 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC-ch
Confidence            368999999999999999999988 99999999998888775542   1       223356788999999999998 44


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ....++   +   ..++.|..++|+|-..+.. .++.+..++.|+.++
T Consensus        80 ~~~~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v  120 (389)
T COG1748          80 VDLTIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV  120 (389)
T ss_pred             hhHHHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence            444555   2   3466788888887766654 566666666665433

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.40  E-value=1.7e-06  Score=68.64  Aligned_cols=112  Identities=24%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH-CCCcEE-EEcCCccc-h----hhH---HhCCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSK-C----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~-~g~~V~-~~~~~~~~-~----~~~---~~~g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      |||+|+|+ |+||+.+++.+.+ .++++. +++++++. .    ..+   ...++...++++++++.+|++|-.+ .+..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence            48999999 9999999999988 678855 57777621 1    111   1235677889999999999999998 6777


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      +...+   +..   ++.+.-+|-.++|.........+.+.+. +.++-+|.
T Consensus        80 ~~~~~---~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~N  123 (124)
T PF01113_consen   80 VYDNL---EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPN  123 (124)
T ss_dssp             HHHHH---HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SS
T ss_pred             hHHHH---HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCC
Confidence            77776   433   3447777776777654443444444333 44544443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.40  E-value=1.1e-06  Score=81.62  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=71.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ...++||||+|.+|...++.+...  ..+|.+|||++++.+.+.+    .+  +..+.+.++++++||+|++|+|..   
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence            346899999999999988887652  3679999999988776544    24  345789999999999999999743   


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChh
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      +.++  +   .+.+++|++|..++.-.|.
T Consensus       204 ~P~~--~---~~~l~~g~~v~~vGs~~p~  227 (325)
T TIGR02371       204 KPVV--K---ADWVSEGTHINAIGADAPG  227 (325)
T ss_pred             CcEe--c---HHHcCCCCEEEecCCCCcc
Confidence            3444  1   2357999999988776553

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=7.3e-06  Score=69.88  Aligned_cols=193  Identities=16%  Similarity=0.124  Sum_probs=125.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +...+.+||||.|+.|++...+....++.... ..|+++..+.+.+--+...-+.+...+-.+++++-+|+. ....+. 
T Consensus         7 ~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va-   84 (289)
T COG5495           7 RPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA-   84 (289)
T ss_pred             cceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH-
Confidence            34457899999999999966666555565543 456766666555432222223444444567888888754 333333 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCC--C-CCCCcC--CCCceEEEecCCHhHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APV--S-GSKKPA--EDGQLIFLAAGDKSLYNTVAPL  219 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~--~-~~~~~~--~~~~~~~~~~g~~~~~~~v~~l  219 (358)
                        .  ...-.||+++++||.....   .+.+.+...|..-.+ +|.  | +.+...  -.++.+.+..+|+.....++.+
T Consensus        85 --a--~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~l  157 (289)
T COG5495          85 --A--TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSL  157 (289)
T ss_pred             --H--hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHH
Confidence              1  1235699999999876554   344445444432222 232  2 222222  2344445556777788899999


Q ss_pred             HHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303          220 LDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  269 (358)
Q Consensus       220 l~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  269 (358)
                      ...+|.+++.+-+ +.-..++...+...++.+..+.++..+.+..|+|.-
T Consensus       158 a~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~  206 (289)
T COG5495         158 ALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP  206 (289)
T ss_pred             HHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence            9999998876654 447778888888888888899999999999998753

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.37  E-value=3.6e-06  Score=77.14  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCc-cchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ..||+|||+|+||+.+++.+... ++++.+ +++++ ++..  ...++....+.++++.+.|+|++|+|.....+...  
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~--   78 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA--   78 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence            36999999999999999999765 788764 78875 3222  12244445577788889999999998766544443  


Q ss_pred             cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHh-cCCeEec
Q 018303          147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE  187 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~-~~~~~~~  187 (358)
                           +.+..|..+|++.-.   .+...+.+.++.++ +++.++.
T Consensus        79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~  118 (324)
T TIGR01921        79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS  118 (324)
T ss_pred             -----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence                 446788888877432   22345566666664 3444443

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.37  E-value=1.8e-06  Score=78.62  Aligned_cols=117  Identities=25%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-C----CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ...++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. +    +....+..+.+.++|+||.++|....-
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            456789999999999999999999999 7899999998887766542 1    111113346678899999999865432


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ..-.  ..-....++++.+++|+.-.+.. + .+.+..++.|..+++
T Consensus       200 ~~~~--~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~  242 (278)
T PRK00258        200 ELPL--PPLPLSLLRPGTIVYDMIYGPLP-T-PFLAWAKAQGARTID  242 (278)
T ss_pred             CCCC--CCCCHHHcCCCCEEEEeecCCCC-C-HHHHHHHHCcCeecC
Confidence            1100  01112457789999999764433 2 466666666665544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.35  E-value=3.2e-06  Score=76.31  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCcc--chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +||||||+|+||+.+++.+... +.++.+ +++...  +.......+...+++++++..+.|+|+.|+|.. ......  
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~--   78 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV--   78 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH--
Confidence            6899999999999999999875 566543 444322  111111124566778888745699999999744 444444  


Q ss_pred             cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCCe
Q 018303          147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS  184 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~  184 (358)
                          ...++.|..++..+.+   .....+.+.+..++.|..
T Consensus        79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence                2346678777766554   233356677777777654

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.34  E-value=2.9e-06  Score=75.09  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---CcE-EEEcCCccchhhHHhCCCccCCCHHHH-hhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g---~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +||||||+|.||+.+++.+...+   +++ .+++|++++.+.+... .....+++++ ...+|+|+.|.+ ...+++.. 
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~-   79 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA-   79 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH-
Confidence            58999999999999999997642   443 4578877666666544 6678899997 578999999994 77777776 


Q ss_pred             ccccccccCCCCCEEEEccCCChhH---HHHHHHHHHhcC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDT---SKLINGHIKATG  182 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~---~~~l~~~l~~~~  182 (358)
                        ..+   |..|.-++-.|-+...|   .+.+.+..+..+
T Consensus        80 --~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g  114 (267)
T PRK13301         80 --EGC---LTAGLDMIICSAGALADDALRARLIAAAEAGG  114 (267)
T ss_pred             --HHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence              433   56677777777665543   556666666554

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.32  E-value=2.9e-06  Score=78.07  Aligned_cols=95  Identities=16%  Similarity=0.215  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----CCcc-CCCHHHHhhcCCEEEEeeCChhhH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ...++++|||+|.+|+..++.+.. .+ .+|.+|+|++++.+.+.+.    ++.. +.+.++++.++|+|+.|+|.+   
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---  199 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---  199 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence            445799999999999999999975 55 4699999999887766542    2222 468889999999999999844   


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      +.++   ..   .++||++|..++.-.|...
T Consensus       200 ~Pl~---~~---~~~~g~hi~~iGs~~p~~~  224 (304)
T PRK07340        200 TPVY---PE---AARAGRLVVAVGAFTPDMA  224 (304)
T ss_pred             Ccee---Cc---cCCCCCEEEecCCCCCCcc
Confidence            3555   22   4789999999887666433

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.32  E-value=4.2e-06  Score=75.21  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ++|+|+|+ |+||+.+++.+... ++++. ++|++++........++..+.+++++++++|+|+.++| +......+   
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~---   77 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL---   77 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH---
Confidence            68999998 99999999998864 67765 48887765443323355567899999988999998886 44445444   


Q ss_pred             ccccccCCCCCEEEEccCC-ChhHHHHHHH
Q 018303          148 HGAASGMGPGKGYVDVSTV-DGDTSKLING  176 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~  176 (358)
                         ...++.|..++..+++ ...+.+.+.+
T Consensus        78 ---~~al~~G~~vvigttG~s~~~~~~l~~  104 (257)
T PRK00048         78 ---EFALEHGKPLVIGTTGFTEEQLAELEE  104 (257)
T ss_pred             ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence               2345667666644444 3444445555

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=98.31  E-value=7.9e-05  Score=65.45  Aligned_cols=158  Identities=11%  Similarity=0.080  Sum_probs=101.9

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          113 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       113 g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      |+..++|-.|+++++|++|+-+|....+..++   +++.+.+++|+++.|+++.++..--.+.+.+.+..+.+.+... +
T Consensus       126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a  201 (340)
T TIGR01723       126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G  201 (340)
T ss_pred             CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence            56778888899999999999999999899999   9999999999999999999988666666666555444433221 1


Q ss_pred             CCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Q 018303          193 SKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNV  270 (358)
Q Consensus       193 ~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~  270 (358)
                      ..|... ++..+..+ .++++++++.++.++.++.++.+...-.+....+. ..+....++++.+-...+ +-.|.+.+.
T Consensus       202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~IlgAP~~m  279 (340)
T TIGR01723       202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKILGAPADF  279 (340)
T ss_pred             CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            122222 23322222 38999999999999999998876542112222221 222233333333433332 336666665


Q ss_pred             HHHHHh
Q 018303          271 LVEVVS  276 (358)
Q Consensus       271 ~~~~~~  276 (358)
                      +...+.
T Consensus       280 iq~qa~  285 (340)
T TIGR01723       280 AQMMAD  285 (340)
T ss_pred             HHHHHH
Confidence            544433

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.31  E-value=1.2e-05  Score=60.49  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHH
Q 018303          235 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRL  312 (358)
Q Consensus       235 ~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~  312 (358)
                      .++..|++.|.+....++.++|...+|++.|+|..++.+.+....           ++...-+.|  |+....+.||...
T Consensus         3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~-----------ri~~~~~~pg~g~GG~ClpkD~~~   71 (96)
T PF00984_consen    3 EAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDP-----------RIGPHYLRPGPGFGGSCLPKDPYA   71 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTST-----------TTTSSS-S-SSS--SSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCc-----------ccccccCCCCCCCCCcchhhhHHH
Confidence            588999999999999999999999999999999999999988642           222222233  4556789999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHH
Q 018303          313 ALGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       313 ~~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      +...++++|.+.++++++.+...
T Consensus        72 L~~~~~~~g~~~~ll~~~~~~N~   94 (96)
T PF00984_consen   72 LIYLAKELGYPPQLLEAVININE   94 (96)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHhcC
Confidence            99999999999999998887654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.30  E-value=3.5e-06  Score=76.76  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-----C---CccCCCHHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G---AKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g---~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ...++++.|||+|.+|++++..|...|. +|+++||+.++.+.+.+.     .   +....+..+.+.++|+||.++|..
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            3556799999999999999999999997 799999998887776542     1   111234455678899999999854


Q ss_pred             hhHh-h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          138 ESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       138 ~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ..-. . -+  +   ...++++.+++|+.-.+..+  .+.+..+++|...++
T Consensus       204 m~~~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~  248 (284)
T PRK12549        204 MAKHPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD  248 (284)
T ss_pred             CCCCCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence            3211 1 11  1   13467888999997655443  466666666655544

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=98.30  E-value=8.5e-05  Score=65.16  Aligned_cols=155  Identities=13%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec---CC
Q 018303          113 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE---AP  189 (358)
Q Consensus       113 g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~---~~  189 (358)
                      |+..++|-.|+++++|++++-+|....+..++   +++.+.+++|++|.|+++.++...-.+.+.+.+..+.+.+   +.
T Consensus       128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa  204 (342)
T PRK00961        128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA  204 (342)
T ss_pred             CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            56778888899999999999999999899999   9999999999999999999988666665556555443333   33


Q ss_pred             CCCCCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC
Q 018303          190 VSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLD  267 (358)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~  267 (358)
                      +.+.+     |+...-.+ .+++.++++.++.++.++.++.+...-.+....+. ..+....++++.+-...+ +-.|.+
T Consensus       205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~tqIlgAP  278 (342)
T PRK00961        205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVTQILGAP  278 (342)
T ss_pred             CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33333     33322111 28899999999999999998877552112222222 222333333333443333 336666


Q ss_pred             HHHHHHHHh
Q 018303          268 PNVLVEVVS  276 (358)
Q Consensus       268 ~~~~~~~~~  276 (358)
                      .+.+...+.
T Consensus       279 ~~mie~qa~  287 (342)
T PRK00961        279 ADFAQMMAD  287 (342)
T ss_pred             HHHHHHHHH
Confidence            665544433

>PLN00203 glutamyl-tRNA reductase

Probab=98.29  E-value=1e-06  Score=86.26  Aligned_cols=70  Identities=26%  Similarity=0.392  Sum_probs=56.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--CC----ccCCCHHHHhhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GA----KYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--g~----~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      +.+++|+|||+|.||..+++.|...|. +|++++|++++.+.+.+.  +.    ...++..+++.++|+||.|+|.+
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~  340 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE  340 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence            557899999999999999999999996 699999999888777653  22    12346677889999999998643

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.27  E-value=4.1e-06  Score=77.94  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..++++|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+     .++  ..+.+.+++++++|+|+.|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            45789999999999999988754 45 478999999988776654     133  34678899999999999999844  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       +.++   .   ..+++|++|+.++.-.|.
T Consensus       204 -~p~i---~---~~l~~G~hV~~iGs~~p~  226 (325)
T PRK08618        204 -TPVF---S---EKLKKGVHINAVGSFMPD  226 (325)
T ss_pred             -Ccch---H---HhcCCCcEEEecCCCCcc
Confidence             3455   2   567999999988776553

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.27  E-value=3.8e-06  Score=70.14  Aligned_cols=80  Identities=23%  Similarity=0.317  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.+++|.|||+|.| |..+++.|.+.|.+|.+++|+.              .++.+.+.++|+||.+++.+.    ++ 
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii-  101 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV-  101 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-
Confidence            578899999999997 8889999999999999999863              356678999999999997542    44 


Q ss_pred             ccccccccCCCCCEEEEccCCChh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       +.+   .++++.++||++....+
T Consensus       102 -~~~---~~~~~~viIDla~prdv  121 (168)
T cd01080         102 -KGD---MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             -cHH---HccCCeEEEEccCCCcc
Confidence             222   36778999999765433

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.22  E-value=4.1e-06  Score=76.86  Aligned_cols=93  Identities=8%  Similarity=0.089  Sum_probs=71.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-C-CcEEEEcCCccchhhHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g-~~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..+++||||+|.+|...++.+... . -+|.+|+|++++.+.+.+.     +  +..+.+.++++++||+|+.++|..  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            346899999999999999998763 3 4699999999987766432     3  445679999999999999999743  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       +.++  +   .++++||.+|.-++.-.|.
T Consensus       194 -~P~~--~---~~~l~pg~hV~aiGs~~p~  217 (301)
T PRK06407        194 -TPIF--N---RKYLGDEYHVNLAGSNYPN  217 (301)
T ss_pred             -CcEe--c---HHHcCCCceEEecCCCCCC
Confidence             3555  2   2367899888877666553

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.22  E-value=9.2e-06  Score=76.15  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             CCeEEEEcCChhH-HHHHHHHHHCCC---cEEEEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMG-TPMAQNLLKAGC---DVTVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG-~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      .+||||||+|.++ ...+..+...+.   -|.++|+++++++.+.+. ++ ..+++.+++++.  .|+|++++|...+.+
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e   82 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence            4689999999666 458888888763   356789999887776653 55 377899999986  599999999776666


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.       ..++.|+.|+.-  -.....+.+++.+..++.+..+
T Consensus        83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l  121 (342)
T COG0673          83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL  121 (342)
T ss_pred             HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence            665       457788888765  2345566777888887765443

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.21  E-value=6.5e-06  Score=80.47  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHH--hhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++.+++++|+|+|.+|++++..|...|++|.+++|+.++.+.+.+. +... .+.+++  +.++|+||.|+|....+...
T Consensus       329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~~~~~l~~~DiVInatP~g~~~~~~  407 (477)
T PRK09310        329 PLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLESLPELHRIDIIINCLPPSVTIPKA  407 (477)
T ss_pred             CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echhHhcccCCCCEEEEcCCCCCcchhH
Confidence            4567899999999999999999999999999999998776665442 1111 122222  46899999999976432211


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                                +.  .+++|+...+..+.  +.+..++.|...++
T Consensus       408 ----------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~  437 (477)
T PRK09310        408 ----------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY  437 (477)
T ss_pred             ----------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence                      11  38899988766554  66777777765554

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.21  E-value=4.9e-06  Score=76.81  Aligned_cols=94  Identities=19%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-C-CcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g-~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ..++++|||+|.++...++.+... . -+|.+|+|++++.+.+.+    .+  +..+++.++++++||+|+.++|.+   
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence            346899999999999999998753 2 479999999998776553    13  333678999999999999999633   


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                      ..++  +   .+++++|++|+.++.-.|..
T Consensus       204 ~P~~--~---~~~l~~G~hi~~iGs~~p~~  228 (315)
T PRK06823        204 EPLL--Q---AEDIQPGTHITAVGADSPGK  228 (315)
T ss_pred             Ccee--C---HHHcCCCcEEEecCCCCccc
Confidence            3555  2   24678999999887766643

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=98.19  E-value=7e-06  Score=75.59  Aligned_cols=111  Identities=14%  Similarity=0.234  Sum_probs=82.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh----CC---CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG---AKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      .+++|||+|.++...++.+.. ++ -+|.+|+|+++..+.+..    .+   +..+.+.++++++||+|+.|+|...   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            589999999999999999986 34 479999999998877653    22   4567899999999999999998543   


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                      .++  .   .++++||++|..++...|.-.+--.+.+...+..++|.+
T Consensus       208 Pil--~---~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~  250 (330)
T COG2423         208 PVL--K---AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL  250 (330)
T ss_pred             Cee--c---HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence            666  2   346889999998887655544333444444444566543

>PRK06046 alanine dehydrogenase; Validated

Probab=98.16  E-value=6.1e-06  Score=76.79  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CCC-cEEEEcCCccchhhHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ...+|||||+|.+|...++.+.. .+. .|.+|||++++.+.+.+.     +  +..+++.+++++ +|+|++|+|..  
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--  204 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--  204 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence            34689999999999999999875 343 688899998877765542     3  334678899887 99999999853  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       ..++  +   .+++++|++|..++.-.|.
T Consensus       205 -~P~~--~---~~~l~~g~hV~~iGs~~p~  228 (326)
T PRK06046        205 -KPVV--K---AEWIKEGTHINAIGADAPG  228 (326)
T ss_pred             -CcEe--c---HHHcCCCCEEEecCCCCCc
Confidence             3555  1   2457999999888766553

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.16  E-value=1.1e-05  Score=74.22  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h--------CCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      |+|+|||+|.||..+|..++..|+ +|.++|++.+..+...    +        ..+....+.++ +++||+||++++.+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999999876 8999999765433111    1        01334567776 78999999999743


Q ss_pred             hh---------------HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          138 ES---------------AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       138 ~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      ..               ++.++   +++.+. .++.++|+.++-...
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~-~p~~~iIv~tNP~di  123 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVT---GRIMEH-SPNPIIVVVSNPLDA  123 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEecCcHHH
Confidence            21               12222   334333 467788887664333

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.16  E-value=7.3e-06  Score=76.28  Aligned_cols=92  Identities=14%  Similarity=0.267  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-----CC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..++++|||+|.+|...++.+.. .+ .+|.+|+|++++.+.+.+.     ++  ...++++++++++|+|+.|+|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            34689999999999999999974 66 4699999999887766542     33  23578899999999999999753  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                       ..++  .   .+.+++|.++..++.-.+
T Consensus       206 -~p~i--~---~~~l~~g~~i~~vg~~~p  228 (326)
T TIGR02992       206 -TPIL--H---AEWLEPGQHVTAMGSDAE  228 (326)
T ss_pred             -CcEe--c---HHHcCCCcEEEeeCCCCC
Confidence             2454  1   135789998887765433

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.15  E-value=2.3e-06  Score=82.28  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ...+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. +..  ...++.+.+.++|+||.|++.+
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~  251 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP  251 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC
Confidence            356789999999999999999999999 7899999998776655442 321  2245667788999999998644

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.15  E-value=7.4e-06  Score=64.83  Aligned_cols=92  Identities=17%  Similarity=0.300  Sum_probs=59.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC-CCcEEEE-cCCccchhhHHhCC--Cc--cC--CCHHHH-hhcCCEEEEeeCChhhHh
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK--YQ--PSPDEV-AASCDVTFAMLADPESAM  141 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~~~~~~g--~~--~~--~~~~~~-~~~aDivi~~vp~~~~~~  141 (358)
                      ||+|+|+ |.+|..++..+... ++++..+ +++.++.+.+...+  +.  ..  .+.+++ ..++|+|++|+|.. ...
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence            5899995 99999999999884 7777654 55443333333221  10  00  111122 24899999999854 555


Q ss_pred             hhhcccccccccCCCCCEEEEccCCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .++   ..+...+++|+++||+++..
T Consensus        80 ~~~---~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       80 EIA---PLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHH---HHHHhhhcCCCEEEECCccc
Confidence            554   33345578999999998753

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.12  E-value=2.4e-05  Score=70.63  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHH-CCCcEE-EEcCC-ccch-hhHHh------CCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~-~g~~V~-~~~~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ++|+|+| +|+||+.+++.+.. .++++. ++||. ++.. ....+      .++..+++++++...+|+||.++| +..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~   80 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG   80 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence            5899999 69999999999986 577765 47753 2221 11111      245667888888657999999996 555


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      ....+   .   ..++.|..+|..+++ ...+.+.+.++.++.++.++-.+.
T Consensus        81 ~~~~~---~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N  126 (266)
T TIGR00036        81 VLNHL---K---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN  126 (266)
T ss_pred             HHHHH---H---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence            55555   2   345666656644444 344556666666665555554443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.12  E-value=6.7e-06  Score=70.71  Aligned_cols=99  Identities=21%  Similarity=0.138  Sum_probs=68.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CC--cc--CCC---HHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GA--KY--QPS---PDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~--~~--~~~---~~~~~~~aDivi~~  133 (358)
                      +++++++.|+|. |.+|+.+++.|...|++|.+++|+.++.+.+.+.     +.  ..  ..+   ..++++++|+||.+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            456679999995 9999999999999999999999998776555431     11  11  122   34678899999999


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      +|.+..+....      ....+++.+++|+....+...
T Consensus       105 t~~g~~~~~~~------~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078         105 GAAGVELLEKL------AWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             CCCCceechhh------hcccCceeEEEEccCCCCCCc
Confidence            98655421111      123455789999877665543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=1.2e-05  Score=72.38  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|.+ |+.++..|...|..|+++...              +.++.+.+++||+||.++|.+    +++ 
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~----~~i-  215 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKR----NVL-  215 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCc----Ccc-
Confidence            578899999999999 999999999999999988642              236778899999999999843    345 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +.   .++++|+++||++..
T Consensus       216 -~~---~~ik~gavVIDVGin  232 (285)
T PRK14189        216 -TA---DMVKPGATVIDVGMN  232 (285)
T ss_pred             -CH---HHcCCCCEEEEcccc
Confidence             22   568999999999754

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.11  E-value=1.1e-05  Score=75.14  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..++|+|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+.     ++.  ...++++++.++|+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            34689999999999999998875 45 5799999999888776542     332  3578899999999999999753  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                       ..++  ..   ..+++|+++..++.
T Consensus       209 -~p~i--~~---~~l~~g~~v~~vg~  228 (330)
T PRK08291        209 -EPIL--KA---EWLHPGLHVTAMGS  228 (330)
T ss_pred             -CcEe--cH---HHcCCCceEEeeCC
Confidence             2444  11   24678887766544

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=1.4e-05  Score=72.10  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +++++++.|||.|. +|+.+|..|...|..|+++++..              .++.+.+++||+||.+++.+.    ++ 
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i-  215 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV-  215 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc-
Confidence            57889999999999 99999999999999999998642              367788999999999998643    34 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   ..+++|+++||++..
T Consensus       216 -~~---~~vk~gavVIDvGi~  232 (286)
T PRK14175        216 -TK---DVVKEGAVIIDVGNT  232 (286)
T ss_pred             -CH---HHcCCCcEEEEcCCC
Confidence             22   247899999999753

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.09  E-value=4.1e-06  Score=80.79  Aligned_cols=71  Identities=25%  Similarity=0.349  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCChh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      ..+++|+|||+|.||..+++.|...|. +|++++|++++...+... |..  ...+..+.+.++|+||.|+|.+.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence            567899999999999999999999997 799999998876655443 322  12355667788999999997543

>PRK11579 putative oxidoreductase; Provisional

Probab=98.07  E-value=4e-05  Score=72.13  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      .+|||||+|.||.. .+..+... ++++. ++|+++++..  ... +...++|++++++  +.|+|++|+|...+.+.++
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~   82 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK   82 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            58999999999984 56666553 67765 5888875543  122 4556789999996  4799999999766655554


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|+.|+.-  -.....+.+++.++.++.++.+
T Consensus        83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l  118 (346)
T PRK11579         83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL  118 (346)
T ss_pred             -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence                   346678877743  2234456677777777766543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.07  E-value=7e-06  Score=75.89  Aligned_cols=95  Identities=17%  Similarity=0.256  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ...+++|||+|..|...++.+.. ++ -+|.+|+|++++.+.+.+.    +  +..+++.++++++||+|+.|+|.....
T Consensus       127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~  206 (313)
T PF02423_consen  127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA  206 (313)
T ss_dssp             T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence            34689999999999999999875 44 4799999999887766542    2  345778999999999999999744322


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChh
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       .++  +   ..++++|.+|+.++...+.
T Consensus       207 -P~~--~---~~~l~~g~hi~~iGs~~~~  229 (313)
T PF02423_consen  207 -PVF--D---AEWLKPGTHINAIGSYTPG  229 (313)
T ss_dssp             -ESB------GGGS-TT-EEEE-S-SSTT
T ss_pred             -ccc--c---HHHcCCCcEEEEecCCCCc
Confidence             555  2   2468999999988876663

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=98.06  E-value=4.7e-05  Score=70.96  Aligned_cols=110  Identities=11%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCCh--hhHhhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP--ESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~--~~~~~~~  144 (358)
                      .+|||||+ .||...++.+...  ++++. ++|+++++.+.+.+ .|+..+++.++++++.|++++++|..  .....-+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            58999999 6899999999875  46654 68999888877765 47777899999999999999999742  2222111


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                           ....++.|+.|+.---....+.+++.+..+++++.+.
T Consensus        83 -----a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 -----ARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             -----HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence                 1245778888886644456677788888888777654

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.05  E-value=1.1e-05  Score=76.06  Aligned_cols=69  Identities=26%  Similarity=0.305  Sum_probs=58.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-C--CccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G--AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ++.++++.|||+|.||..+|+.|...| .+|++.+|+.+++..+++. |  +...+++.+.+.++|+||.++.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs  247 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS  247 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence            467889999999999999999999999 6799999999998877653 4  2334566778899999999984

>PRK07589 ornithine cyclodeaminase; Validated

Probab=98.04  E-value=9.9e-06  Score=75.51  Aligned_cols=95  Identities=14%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ..+++|||+|..+...++.+.. +. .+|.+|+|++++.+.+.+    .+  +..+++.++++++||+|+.++| +....
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~-S~~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTA-DKTNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC-CCCCC
Confidence            4689999999999999888765 33 479999999988776553    23  3446899999999999999996 32323


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhH
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                      .++  .   .+++++|++|.-++.-.|..
T Consensus       208 Pvl--~---~~~lkpG~hV~aIGs~~p~~  231 (346)
T PRK07589        208 TIL--T---DDMVEPGMHINAVGGDCPGK  231 (346)
T ss_pred             cee--c---HHHcCCCcEEEecCCCCCCc
Confidence            455  1   24679999988777655543

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.02  E-value=3e-05  Score=71.68  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=47.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----hC----C----CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +||+|||+|.||..+|..++..|. +|.++|++++..+...    +.    +    +....+. +.+++||+||+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            699999999999999999998765 9999999876543211    11    1    1223455 45789999999973

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.02  E-value=9.8e-06  Score=67.98  Aligned_cols=97  Identities=24%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc---c-----------------------CCCH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y-----------------------QPSP  120 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~-----------------------~~~~  120 (358)
                      .....+|.|+|.|+.|..-++.+...|++|..+|.++...+.....+..   .                       ...+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            3455799999999999999999999999999999988766655443221   1                       1134


Q ss_pred             HHHhhcCCEEEEeeC-ChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          121 DEVAASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       121 ~~~~~~aDivi~~vp-~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.++.+|+||.++- .......++  .++..+.|+++.+|+|+|-
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETTG
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEEe
Confidence            566788999997552 344555666  5777889999999999964

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.01  E-value=3.3e-05  Score=81.03  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCc-------------EEEEcCCccchhhHHhC--C---Ccc-CCCHHHHh---h
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCD-------------VTVWNRTKSKCDPLISL--G---AKY-QPSPDEVA---A  125 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~-------------V~~~~~~~~~~~~~~~~--g---~~~-~~~~~~~~---~  125 (358)
                      .+++|+|||+|.||+.+++.|+.. +.+             |.++|++++.++.+.+.  +   +.. +.+.+++.   +
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999864 333             88999998877766542  3   222 45666655   5


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ++|+|++|+|...+ ..++      ...++.|+.+++.+ -......++.+..++.++.++.
T Consensus       648 ~~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~  701 (1042)
T PLN02819        648 QVDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC  701 (1042)
T ss_pred             CCCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence            79999999986433 2222      24466778888776 4455566777777777766543

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.00  E-value=3.4e-05  Score=71.59  Aligned_cols=93  Identities=18%  Similarity=0.190  Sum_probs=62.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHH----h----CC----CccCCCHHHHhhcCCEEEEee--
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAML--  134 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~----~----~g----~~~~~~~~~~~~~aDivi~~v--  134 (358)
                      .+||+|||+|.||..++..+...| .++.++|++++..+...    +    .+    +....+.+ .+++||+||++.  
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~   83 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGV   83 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCC
Confidence            469999999999999999999888 68999999876543211    1    01    12234665 679999999999  


Q ss_pred             CChh-------------hHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          135 ADPE-------------SAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       135 p~~~-------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      |..+             -.+.+.   +++.+ ..|.+++|+.++..
T Consensus        84 ~~~~g~~r~dll~~n~~i~~~i~---~~i~~-~~p~a~vivvsNP~  125 (319)
T PTZ00117         84 QRKEEMTREDLLTINGKIMKSVA---ESVKK-YCPNAFVICVTNPL  125 (319)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHH-HCCCeEEEEecChH
Confidence            3221             122333   33333 45788888886543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.00  E-value=1.3e-05  Score=75.74  Aligned_cols=92  Identities=18%  Similarity=0.257  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-C-C-CcEEEEcCCccchhhHHh----C--C---CccCCCHHHHhhcCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-A-G-CDVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~-g-~~V~~~~~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ..++++|||+|.++...++.+.. + . -+|.+|+|++++.+.+.+    .  +   +..+++.++++++||+|+.|++.
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence            34689999999999999999876 3 2 479999999988776543    1  2   44568999999999999999964


Q ss_pred             hh---hHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PE---SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~---~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..   ....++  +   .+++++|++|+..+.
T Consensus       234 ~~~~~s~~Pv~--~---~~~lkpG~hv~~ig~  260 (379)
T PRK06199        234 ETGDPSTYPYV--K---REWVKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence            32   233555  2   246789998875433

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.98  E-value=3.1e-05  Score=71.79  Aligned_cols=67  Identities=22%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhh--H---Hh---C----CCccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP--L---IS---L----GAKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~--~---~~---~----g~~~~~~~~~~~~~aDivi~~  133 (358)
                      ....+||+|||+|.||..+|..++..|. +|.++|++++....  +   ..   .    .+....+. +.+++||+||++
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            3445799999999999999999998885 89999998875421  1   00   1    12333566 567999999997


Q ss_pred             e
Q 018303          134 L  134 (358)
Q Consensus       134 v  134 (358)
                      .
T Consensus        82 a   82 (321)
T PTZ00082         82 A   82 (321)
T ss_pred             C
Confidence            7

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.97  E-value=4.2e-05  Score=56.47  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+.+++++|+|+|.+|+.++..+... +.+|.+|||                          |+++.+++.+.....   
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~---   70 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE---   70 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH---
Confidence            45667999999999999999999998 578999988                          999999975433322   


Q ss_pred             ccccccccCCCCCEEEEcc
Q 018303          146 GKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s  164 (358)
                         +....++++.++++++
T Consensus        71 ---~~~~~~~~~~~v~~~a   86 (86)
T cd05191          71 ---EATAKINEGAVVIDLA   86 (86)
T ss_pred             ---HHHHhcCCCCEEEecC
Confidence               1234567888888763

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.95  E-value=3.2e-05  Score=60.55  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=72.9

Q ss_pred             CeEEEEc----CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG----~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|+|||    -++.|..+.+.|.+.|++|+.+++..+...     |...+.++.|.-...|++++++| +..+..++  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v--   72 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV--   72 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence            4799999    689999999999999999999988765432     56677888884478999999996 77888888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                       +++.+. ..+.+++..+    ...+++.+.+++.++.+++.
T Consensus        73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp  108 (116)
T PF13380_consen   73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP  108 (116)
T ss_dssp             -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred             -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence             655443 4555666444    55667888888888888754

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.95  E-value=5.3e-05  Score=62.50  Aligned_cols=79  Identities=24%  Similarity=0.353  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+. +|+.++..|...|..|+.++.+.              .++++.++++|+||.+++.+..    + 
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i-   93 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I-   93 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B-
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c-
Confidence            57889999999985 99999999999999999987643              3677889999999999975433    3 


Q ss_pred             ccccccccCCCCCEEEEccCCCh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                       .   ..++++|+++||++....
T Consensus        94 -~---~~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   94 -K---ADWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             -----GGGS-TTEEEEE--CEEE
T ss_pred             -c---cccccCCcEEEecCCccc
Confidence             1   235799999999976544

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.92  E-value=2.1e-05  Score=71.58  Aligned_cols=102  Identities=17%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      -+.+|++-|.|+|..|+.+|.+++..|.+|+++..+|-++-...-.|..+. ..+|+...+|++|.++.    .++++  
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi--  278 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVI--  278 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCcc--
Confidence            467889999999999999999999999999999998866544444566654 78899999999999985    45566  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLIN  175 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~  175 (358)
                      ..+-+..||.|+++.|.+.-.. ++...|.
T Consensus       279 ~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~  308 (420)
T COG0499         279 RKEHFEKMKDGAILANAGHFDVEIDVAGLE  308 (420)
T ss_pred             CHHHHHhccCCeEEecccccceeccHHHHH
Confidence            4566778999999999875433 3333443

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.92  E-value=3.9e-05  Score=74.67  Aligned_cols=97  Identities=18%  Similarity=0.230  Sum_probs=70.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc--CC---------------C----------H
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------P  120 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~---------------~----------~  120 (358)
                      ..+.++.|+|+|.+|...++.+...|..|+++|+++++.+.....|...  .+               +          +
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            3457999999999999999999999999999999988777666555432  00               0          3


Q ss_pred             HHHhhcCCEEEEeeCC-hhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          121 DEVAASCDVTFAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       121 ~~~~~~aDivi~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+.++++|+||.++-- ......++  .++..+.|++|.++||++..
T Consensus       242 ~e~~~~~DIVI~TalipG~~aP~Li--t~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPAPKLI--TEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCCCeee--hHHHHhhCCCCCEEEEeeeC
Confidence            3456789999998811 11122344  36667899999999999653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.91  E-value=1.8e-05  Score=75.79  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C-C--ccCCCHHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-A--KYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g-~--~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      .+.+++|.|||+|.||+.++..|...|. +|++++|+.++.+.+.+. + .  ...+++.+.+.++|+||.|++.+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence            4667899999999999999999999985 799999998887777653 2 2  22345567788999999999744

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.90  E-value=3e-05  Score=61.24  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=57.3

Q ss_pred             eEEEEc-CChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhC--------CCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           72 RIGFLG-MGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ||+||| +|.+|+.+.+.|.+. .+++ .+++++......+...        .....+...+.+.++|+|++|+| ....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP-HGAS   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC-HHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc-hhHH
Confidence            699999 999999999999884 3454 4456655233333221        11122222344589999999997 5555


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCC
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ....   +.+   +++|..+||.|...
T Consensus        80 ~~~~---~~~---~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   80 KELA---PKL---LKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHH---HHH---HHTTSEEEESSSTT
T ss_pred             HHHH---HHH---hhCCcEEEeCCHHH
Confidence            5555   333   57888999998754

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.89  E-value=2.9e-05  Score=74.88  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             CeEEEEcCChhHHHHHH--HH----HHCCCcEEEEcCCccchhhHHh--------C----CCccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~--~l----~~~g~~V~~~~~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi~  132 (358)
                      ++|+|||+|.+|.+.+.  .+    ...|++|.+||+++++.+....        .    .+..++|+.+++++||+|++
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998665  23    3457899999999877654322        1    23446788899999999999


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      ++|
T Consensus        81 ai~   83 (423)
T cd05297          81 TIQ   83 (423)
T ss_pred             eeE
Confidence            998

linked to 3D####ucture

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.88  E-value=0.0001  Score=64.84  Aligned_cols=108  Identities=18%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCc---EEEEcCC----ccch-------hhHHhC-C-CccCCCHHHHhhcCCEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRT----KSKC-------DPLISL-G-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~---V~~~~~~----~~~~-------~~~~~~-g-~~~~~~~~~~~~~aDiv  130 (358)
                      .+++++|.|+|+|.+|+.++..|...|..   |+++||+    .++.       ..+.+. + .....++.+.++++|+|
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl  101 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF  101 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence            45667999999999999999999999974   9999998    3432       122221 1 11113676888899999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      |-++|...     +  +++..+.|.++.++.++++  |.. +.+.+...+.+..
T Consensus       102 IgaT~~G~-----~--~~~~l~~m~~~~ivf~lsn--P~~-e~~~~~A~~~ga~  145 (226)
T cd05311         102 IGVSRPGV-----V--KKEMIKKMAKDPIVFALAN--PVP-EIWPEEAKEAGAD  145 (226)
T ss_pred             EeCCCCCC-----C--CHHHHHhhCCCCEEEEeCC--CCC-cCCHHHHHHcCCc
Confidence            99997332     2  2344456678888888873  332 3344444444543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK10206 putative oxidoreductase; Provisional

Probab=97.87  E-value=9.5e-05  Score=69.46  Aligned_cols=108  Identities=15%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             CeEEEEcCChhHHH-HHHHHHH--CCCcEE-EEcCCccchhhHHhCC-CccCCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLGMGIMGTP-MAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG~G~iG~~-~a~~l~~--~g~~V~-~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~  143 (358)
                      .||||||+|.++.. .+..+..  .+++|. ++|+++++.+.....+ +..++|.+++++  +.|+|++++|...+.+.+
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~   81 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   81 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence            48999999998753 4554533  356665 6899875543233333 566789999996  579999999977665555


Q ss_pred             hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  118 (344)
T PRK10206         82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV  118 (344)
T ss_pred             H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence            4       345667766543  2234566777888877776554

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.86  E-value=1.8e-05  Score=69.01  Aligned_cols=109  Identities=11%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhc--CCEEEEeeCChhh---
Q 018303           69 LPGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPES---  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivi~~vp~~~~---  139 (358)
                      ...+|+|||+|.+|..+++.+  ...|+++. ++|+++++...... ..+....++.+++++  .|++++|+|....   
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            346899999999999999864  35678776 47887655432211 112233467777755  9999999986543   


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHH
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK  179 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~  179 (358)
                      ...+.  ...+...+....+.+++.++..++..++...+.
T Consensus       163 ~~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~  200 (213)
T PRK05472        163 ADRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ  200 (213)
T ss_pred             HHHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence            22222  222333344445555666655555555555543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.86  E-value=0.00012  Score=59.13  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +.++++|.|+|- ...|..++..|.+.|..|..++++.              .++++.+++||+|+.+++.+    +++ 
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i-   85 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKV-   85 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Ccc-
Confidence            577889999988 6679999999999999999998642              26778899999999999755    334 


Q ss_pred             ccccccccCCCCCEEEEccCCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       +   .+++++|++++|++...
T Consensus        86 -~---~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          86 -P---TEWIKPGATVINCSPTK  103 (140)
T ss_pred             -C---HHHcCCCCEEEEcCCCc
Confidence             2   24589999999987655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=7.3e-05  Score=67.31  Aligned_cols=77  Identities=26%  Similarity=0.344  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-|. +|+.++..|...|..|+++.+.              +.++.+.++++|+||.+++.+..    + 
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~----v-  216 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGF----I-  216 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccc----c-
Confidence            57889999999999 9999999999999999999764              23678889999999999975542    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   ..+++|+++||++..
T Consensus       217 -~~---~~vk~gavVIDvGin  233 (285)
T PRK10792        217 -PG---EWIKPGAIVIDVGIN  233 (285)
T ss_pred             -cH---HHcCCCcEEEEcccc
Confidence             11   457999999999743

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.84  E-value=9.7e-05  Score=67.31  Aligned_cols=117  Identities=16%  Similarity=0.066  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C----CccCC---CHHHHhhcCCEEEEeeCChh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivi~~vp~~~  138 (358)
                      ..++++.|||+|.+|++++..|...|. +|++++|+.++.+.+.+. +    +....   +..+.+.++|+||.|+|...
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            456799999999999999999999997 699999999888777542 1    11121   23355678999999998653


Q ss_pred             hHhh-hhcccccc--cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          139 SAMD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       139 ~~~~-~~~~~~~~--~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      .... .+......  ...+.++.+++|+.=.+..+  .+.+..++.|...+
T Consensus       203 ~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~  251 (282)
T TIGR01809       203 PADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSAAGWRVI  251 (282)
T ss_pred             CCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHHCCCEEE
Confidence            2211 11000000  01234677888886543332  35555555555444

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.84  E-value=8e-05  Score=67.70  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=64.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccch--hhHHhCCCcc-CCCHHHHhh-----cCCEEEEeeCChhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADPES  139 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivi~~vp~~~~  139 (358)
                      +.+|||||+|+||+.+...+.+. +.++. ++|+++++.  +...+.|+.. +.+.+++++     +.|+|+.++|...+
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            46899999999999988887753 56655 588887542  3344457665 468899985     58999999975444


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .+...       ...+.|+.+||.+...
T Consensus        84 ~e~a~-------~a~eaGk~VID~sPA~  104 (302)
T PRK08300         84 VRHAA-------KLREAGIRAIDLTPAA  104 (302)
T ss_pred             HHHHH-------HHHHcCCeEEECCccc
Confidence            33332       3457899999986543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.84  E-value=0.00011  Score=64.55  Aligned_cols=110  Identities=19%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcC----------CccchhhHHhC-C-------CccCCCHHHHh-hc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVA-AS  126 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~  126 (358)
                      ++.+++|.|.|+|++|+.+++.|.+.|.+|+ +.|.          +.+.+....+. |       .... +.++++ .+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~  106 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD  106 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence            5677899999999999999999999999988 5665          33332222221 2       1111 223332 36


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ||+++-|.+...-+.+.+   +    .++ =++|+--++... . ....+.|.++|+.++.
T Consensus       107 ~Dvlip~a~~~~i~~~~~---~----~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~P  157 (227)
T cd01076         107 CDILIPAALENQITADNA---D----RIK-AKIIVEAANGPT-T-PEADEILHERGVLVVP  157 (227)
T ss_pred             ccEEEecCccCccCHHHH---h----hce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence            899999997655555555   3    332 345555555544 4 5677888899988764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=7.5e-05  Score=67.72  Aligned_cols=77  Identities=23%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..++++.|||.|. .|+.++..|...|..|+++++..              .++.+.++++|+||.+++.+.    .+ 
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v-  216 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI-  216 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC-
Confidence            67889999999998 99999999999999999998731              245667789999999997433    34 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +.   +.+++|++++|++-.
T Consensus       217 -~~---~~lk~gavViDvg~n  233 (283)
T PRK14192        217 -KK---DWIKQGAVVVDAGFH  233 (283)
T ss_pred             -CH---HHcCCCCEEEEEEEe
Confidence             22   357999999999643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.82  E-value=0.00012  Score=67.51  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhC--------C--Cc-cCCCHHHHhhcCCEEEEeeCCh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G--AK-YQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g--~~-~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      +|+|||+|.+|..+|..|...|  .+|.++|+++++.+.....        +  .. ...+. +.+++||+||+++..+
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~   79 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP   79 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence            7999999999999999999988  5899999998876544321        1  11 12344 4578999999999653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.81  E-value=0.00016  Score=66.09  Aligned_cols=116  Identities=13%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCc---cchhhHHh----CC----Ccc--CC---CHHHHhhcCCE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKY--QP---SPDEVAASCDV  129 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~---~~~~~~~~----~g----~~~--~~---~~~~~~~~aDi  129 (358)
                      ...++++.|+|+|.+|++++..|+..|.+ |.+++|+.   ++.+.+.+    .+    +..  ..   +..+.++.+|+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            35567899999999999999999999986 99999986   44444322    11    110  11   22344567899


Q ss_pred             EEEeeCChhh--HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          130 TFAMLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       130 vi~~vp~~~~--~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ||.++|....  .....   -.....+.++.+++|+.=.+..+  .+.+..++.|...++
T Consensus       203 lINaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  257 (289)
T PRK12548        203 LVNATLVGMKPNDGETN---IKDTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVG  257 (289)
T ss_pred             EEEeCCCCCCCCCCCCC---CCcHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeC
Confidence            9999985432  11111   00123467888999986654432  466666666655543

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.79  E-value=8.2e-05  Score=68.53  Aligned_cols=62  Identities=21%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             EEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhH----HhC--------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPL----ISL--------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~----~~~--------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|||+|.||..+|..++..|. +|.++|++++..+..    .+.        .+....+. +.+++||+||++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999998776 999999987653211    111        12223454 45799999999884

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.76  E-value=0.00012  Score=66.28  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCcEE-EEcCCccch--hhHHhCCCcc-CCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivi~~vp~~~~~~~~  143 (358)
                      .+|||||+|+||+.++..+.. .++++. ++++++++.  +...+.|+.. +.+.+++++  +.|+|++++|...+.+..
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            489999999999998777764 456665 588887653  3334456643 457888885  578899999866555444


Q ss_pred             hcccccccccCCCCCEEEEccCCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .       ..+..|+.+++.+...
T Consensus        82 ~-------~al~aGk~VIdekPa~   98 (285)
T TIGR03215        82 R-------LLAELGKIVIDLTPAA   98 (285)
T ss_pred             H-------HHHHcCCEEEECCccc
Confidence            3       3467888888875443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.00013  Score=65.81  Aligned_cols=77  Identities=19%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|. +|+.++..|...|..|++++...              .++.+..+++|+||.++..+.    ++ 
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i-  221 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI-  221 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc-
Confidence            57889999999999 99999999999999999998532              367788899999999997553    33 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   ..+++|+++||++..
T Consensus       222 -~~---~~vk~gavVIDvGin  238 (287)
T PRK14176        222 -KA---DMVKEGAVIFDVGIT  238 (287)
T ss_pred             -CH---HHcCCCcEEEEeccc
Confidence             12   357899999999753

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.76  E-value=9.6e-05  Score=71.34  Aligned_cols=110  Identities=18%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--------C--Cc-EEEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--------G--CD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--------g--~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~  137 (358)
                      .+|||+|+|.||+.+++.+.+.        |  .+ +.++++++++.......+..++++.++++.+  .|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            5899999999999999888543        3  34 3457887665432222234567789999864  79999998643


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEe
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ......+      ...++.|+.|+...-. .....++|.+..+++++.+.
T Consensus        84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~  127 (426)
T PRK06349         84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY  127 (426)
T ss_pred             hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence            2223333      3567788888844221 12334677777777777543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.75  E-value=6.8e-05  Score=65.95  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--CCCcc----CCC---HHHH-hhcCCEEEEeeCChhhH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY----QPS---PDEV-AASCDVTFAMLADPESA  140 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~g~~~----~~~---~~~~-~~~aDivi~~vp~~~~~  140 (358)
                      |++.|||+|++|..+|+.|.+.|++|.+.++++++++....  .....    .++   +.++ +.++|+++.++. ...+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~-~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG-NDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC-CCHH
Confidence            58999999999999999999999999999999988777433  22111    112   2333 466999999995 4444


Q ss_pred             hhhh
Q 018303          141 MDVA  144 (358)
Q Consensus       141 ~~~~  144 (358)
                      .-++
T Consensus        80 N~i~   83 (225)
T COG0569          80 NSVL   83 (225)
T ss_pred             HHHH
Confidence            4444

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.74  E-value=9.2e-05  Score=66.86  Aligned_cols=89  Identities=16%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCC----CcEEEEcCCccchhhHHh-----------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           73 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-----------LGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        73 IgIIG~-G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|||+ |.+|..++..+...|    .+|.++|+++++.+....           ..+...+|+.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999999888    689999998876543221           1223355667889999999996522


Q ss_pred             h--------------h-hHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 P--------------E-SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~--------------~-~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +              . ..+.+.   +++ ....|++++++.++
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i-~~~~p~a~~i~~tN  120 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIG---DNI-EKYSPDAWIIVVSN  120 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHH---HHH-HHHCCCeEEEEecC
Confidence            1              1 122232   333 23458888998854

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK04148 hypothetical protein; Provisional

Probab=97.74  E-value=0.00015  Score=57.67  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----cCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----YQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++++|.+||+| -|..+|..|++.|++|++.|.+++..+.+.+.+..     .+....++.+++|+|...=| ++++..-
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-p~el~~~   93 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-PRDLQPF   93 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-CHHHHHH
Confidence            34789999999 99999999999999999999999987776665432     23334467788888887776 5555555


Q ss_pred             hcccccccccCCCCCEEEEccCCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      +   -++.......-++...+.-.
T Consensus        94 ~---~~la~~~~~~~~i~~l~~e~  114 (134)
T PRK04148         94 I---LELAKKINVPLIIKPLSGEE  114 (134)
T ss_pred             H---HHHHHHcCCCEEEEcCCCCC
Confidence            5   44555555444554444433

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.74  E-value=0.0003  Score=61.35  Aligned_cols=111  Identities=12%  Similarity=0.094  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCc----------cchhhHHhC-CCccCC-----CHHHHh-hcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCD  128 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aD  128 (358)
                      ++.+++|.|.|+|++|+.+|+.|.+.|.. |.+.|.+.          +..+...+. ++..+.     +.++++ .+||
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   99 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD   99 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence            56778999999999999999999999885 55678776          443333322 121111     123332 3699


Q ss_pred             EEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +++-|.+.+.-+....       ..++ -++|+.-++++...  .-.+.|.++|+.++.
T Consensus       100 VlipaA~~~~i~~~~a-------~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~v~P  148 (217)
T cd05211         100 IFAPCALGNVIDLENA-------KKLK-AKVVAEGANNPTTD--EALRILHERGIVVAP  148 (217)
T ss_pred             EEeeccccCccChhhH-------hhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcEEEC
Confidence            9999996543333332       3332 34555555554433  567788888877764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.73  E-value=0.00023  Score=65.90  Aligned_cols=68  Identities=15%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh----C-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~-----g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .++||+|||+|.+|..+|..+...|.  ++.++|++.++++....    .     ......+..+.+++||+||++.-.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            44699999999999999999998886  79999998776543221    1     112222333558999999998743

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.72  E-value=0.00011  Score=68.60  Aligned_cols=88  Identities=9%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCccchhhHHh-------------------CCCccCCCHHHHhhcCCE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi  129 (358)
                      +||||+|+|+||+.+++.+... ++++.+ ++++++....+..                   .++....+.++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            5899999999999999998764 577665 5655433222211                   123344567788888999


Q ss_pred             EEEeeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       130 vi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      |+.|+|.. ......   +   ..++.|..+|+.+.
T Consensus        82 VIdaT~~~-~~~e~a---~---~~~~aGk~VI~~~~  110 (341)
T PRK04207         82 VVDATPGG-VGAKNK---E---LYEKAGVKAIFQGG  110 (341)
T ss_pred             EEECCCch-hhHHHH---H---HHHHCCCEEEEcCC
Confidence            99999744 333333   2   23445677776654

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00014  Score=65.52  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.+++|.|||-| .+|+.+|..|...|..|+++....              .++.+.+++||+||.+++.+.    ++ 
T Consensus       154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~----~i-  214 (285)
T PRK14191        154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPD----LI-  214 (285)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCC----cC-
Confidence            5788999999999 999999999999999999985421              246688999999999997543    23 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   .++++|+++||++..
T Consensus       215 -~~---~~vk~GavVIDvGi~  231 (285)
T PRK14191        215 -KA---SMVKKGAVVVDIGIN  231 (285)
T ss_pred             -CH---HHcCCCcEEEEeecc
Confidence             12   246999999999753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.71  E-value=8e-05  Score=72.76  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--C-----------------CH--------
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--P-----------------SP--------  120 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~-----------------~~--------  120 (358)
                      ..+.+|.|+|+|.+|...++.++..|.+|+++|+++++.+...+.|..+.  +                 +.        
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            34679999999999999999999999999999999988887777776521  1                 10        


Q ss_pred             HHHhhcCCEEEEeeCChhh-HhhhhcccccccccCCCCCEEEEccC
Q 018303          121 DEVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       121 ~~~~~~aDivi~~vp~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.++.+|+||.++..+.. ...++  .++.++.|++|.++++++-
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence            1112469999999953221 12222  1455678999999999975

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.70  E-value=6.7e-05  Score=71.69  Aligned_cols=106  Identities=27%  Similarity=0.345  Sum_probs=67.4

Q ss_pred             EEEEcCChhHHHHHHHHHHCC-C-cEEEEcCCccchhhHHhC----CC-----cc--CCCHHHHhhcCCEEEEeeCChhh
Q 018303           73 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GA-----KY--QPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g-~-~V~~~~~~~~~~~~~~~~----g~-----~~--~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      |+|+|+|.+|+.+++.|.+.+ + +|++.||+.++.+.+.+.    .+     ..  ..++.++++++|+||.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            789999999999999999876 4 899999999887776542    11     11  123567889999999999743 4


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ...++   +   ..+..|...||++- .......+.+..++.++.++
T Consensus        80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l  119 (386)
T PF03435_consen   80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTAL  119 (386)
T ss_dssp             HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE
T ss_pred             hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEE
Confidence            44444   2   33556777887322 23344455555655565444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.65  E-value=0.00017  Score=62.10  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      .+...+|+|+|+|.+|+.+|..|+..|. +++++|++
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4566799999999999999999999998 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.65  E-value=0.00027  Score=64.27  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-----CC--ccCCC---HHHHhhcCCEEEEeeCC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA--KYQPS---PDEVAASCDVTFAMLAD  136 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g~--~~~~~---~~~~~~~aDivi~~vp~  136 (358)
                      ..++++.|+|+|..|++++..|...|. +|.+++|+.++.+.+.+.     +.  ....+   ..+.+..+|+||-++|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            456799999999999999999999996 689999999887776542     11  01112   23456789999999985


Q ss_pred             hhhHh-h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          137 PESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       137 ~~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ...-. . .+  +   ...+.++.++.|+.=.+..+  .+.+..++.|...++
T Consensus       205 Gm~~~~~~~~--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  250 (283)
T PRK14027        205 GMPAHPGTAF--D---VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD  250 (283)
T ss_pred             CCCCCCCCCC--C---HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence            43211 0 11  1   13466778888886544332  356666666655443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.64  E-value=5.4e-05  Score=67.76  Aligned_cols=96  Identities=25%  Similarity=0.360  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC--c----cCCCHHHHhhcCCEEEEeeCC-hhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--K----YQPSPDEVAASCDVTFAMLAD-PES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--~----~~~~~~~~~~~aDivi~~vp~-~~~  139 (358)
                      ...-+|.|||.|-+|..-|+.+...|-+|++.|+|.++...+.+. +.  .    ....+++.+.++|+||-++-- ...
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak  245 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK  245 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence            344589999999999999999999999999999998887766542 11  1    123567888999999988721 234


Q ss_pred             HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ...++  ..+..++|+||+++||++-
T Consensus       246 aPkLv--t~e~vk~MkpGsVivDVAi  269 (371)
T COG0686         246 APKLV--TREMVKQMKPGSVIVDVAI  269 (371)
T ss_pred             Cceeh--hHHHHHhcCCCcEEEEEEE
Confidence            44455  3677899999999999954

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.62  E-value=0.00028  Score=63.85  Aligned_cols=114  Identities=24%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC----CC-ccCCCHHHH--hhcCCEEEEeeCChh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GA-KYQPSPDEV--AASCDVTFAMLADPE  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~-~~~~~~~~~--~~~aDivi~~vp~~~  138 (358)
                      ...++++.|+|+|-.+++++..|+..|. +|.+++|+.++.+.+.+.    +. .......++  ..++|+||.++|...
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm  202 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM  202 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence            3456899999999999999999999995 799999999988877653    11 011122222  226999999999665


Q ss_pred             hHhh---hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          139 SAMD---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       139 ~~~~---~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .-..   .+   .  ...++++.++.|+-=.+..+  .+.+..++.|...++
T Consensus       203 ~~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id  247 (283)
T COG0169         203 AGPEGDSPV---P--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID  247 (283)
T ss_pred             CCCCCCCCC---c--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence            4431   22   1  45678999999996655543  366666666655544

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.61  E-value=0.0004  Score=58.72  Aligned_cols=92  Identities=12%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchh----hHHhCCCccCCC----HHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCD----PLISLGAKYQPS----PDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~~~g~~~~~~----~~~~~~~aDivi~~vp~~  137 (358)
                      ++++++|.|||-+. +|+.++..|...|..|++++.+.-...    ...+. -....+    +.+.+++||+||.+++.+
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs-~t~~~~~~~~l~~~~~~ADIVIsAvG~~  137 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHE-KHHVTDEEAMTLDCLSQSDVVITGVPSP  137 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccc-cccccchhhHHHHHhhhCCEEEEccCCC
Confidence            68889999999865 699999999999999999975432110    00000 000013    678899999999999865


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ...   +  .   .+.+++|+++||++...
T Consensus       138 ~~~---i--~---~d~ik~GavVIDVGi~~  159 (197)
T cd01079         138 NYK---V--P---TELLKDGAICINFASIK  159 (197)
T ss_pred             CCc---c--C---HHHcCCCcEEEEcCCCc
Confidence            430   2  1   23478999999997553

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00031  Score=63.08  Aligned_cols=77  Identities=19%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+.-    + 
T Consensus       154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i-  214 (281)
T PRK14183        154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I-  214 (281)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c-
Confidence            6789999999998 889999999999999999885421              3567889999999999975533    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   ..++++|+++||++..
T Consensus       215 -~---~~~vk~gavvIDvGin  231 (281)
T PRK14183        215 -T---EDMVKEGAIVIDIGIN  231 (281)
T ss_pred             -C---HHHcCCCcEEEEeecc
Confidence             1   2357899999999743

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00024  Score=63.82  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.+ ..|+.++..|...|..|+.+.++.              .++.+.+++||+||.+++.+    +++ 
T Consensus       149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv-  209 (279)
T PRK14178        149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI-  209 (279)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc-
Confidence            5788999999999 999999999999999999987642              36778899999999999754    344 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .++   .+++|+++||++..
T Consensus       210 -~~~---~vk~GavVIDVgi~  226 (279)
T PRK14178        210 -TPD---MVKPGATVIDVGIN  226 (279)
T ss_pred             -CHH---HcCCCcEEEEeecc
Confidence             233   36999999999754

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.59  E-value=0.0002  Score=56.16  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             cCChhHHHHHHHHHHC----CCcEE-EEcCC--ccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhccc
Q 018303           77 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        77 G~G~iG~~~a~~l~~~----g~~V~-~~~~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      |+|.||+.+++.+.+.    +++|. +++|+  ..........+.....++++++.  ..|+||-|.+ +......+   
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~---   76 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY---   76 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence            8999999999999875    55654 57777  11111111223556789999998  8999999975 55555555   


Q ss_pred             ccccccCCCCCEEEEccCCChh---HHHHHHHHHHhcCCeE
Q 018303          148 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASF  185 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~~~  185 (358)
                         .+.++.|..||..+-+...   ..+.|.+..++++..+
T Consensus        77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~  114 (117)
T PF03447_consen   77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI  114 (117)
T ss_dssp             ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred             ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence               2456789999977665444   4566666666666554

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.58  E-value=0.00018  Score=66.47  Aligned_cols=66  Identities=20%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhh----HHhCC-----C-ccCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISLG-----A-KYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~----~~~~g-----~-~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      |+|+|||+|.+|..+|..++..|  .+|.++|+++++.+.    +.+..     . ....+. +.+++||+|+++++.+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            58999999999999999999988  589999998866542    22110     0 112344 5578999999999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.57  E-value=0.0002  Score=66.36  Aligned_cols=113  Identities=15%  Similarity=0.199  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ++.+++|.|+|+ |.||+.+++.|.. .| .++++++|+.++...+... +.....++++.+.++|+|+.++..+.   .
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~  228 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---G  228 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---C
Confidence            567899999999 8999999999975 45 5899999987776665443 11122367788999999998884222   2


Q ss_pred             h-hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          143 V-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       143 ~-~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      + +  ++   ..++++.++||.+.-.-++. .+    ...++.+++..+..
T Consensus       229 ~~I--~~---~~l~~~~~viDiAvPRDVd~-~v----~~~~V~v~~gG~V~  269 (340)
T PRK14982        229 VEI--DP---ETLKKPCLMIDGGYPKNLDT-KV----QGPGIHVLKGGIVE  269 (340)
T ss_pred             CcC--CH---HHhCCCeEEEEecCCCCCCc-cc----CCCCEEEEeCCccc
Confidence            2 3  22   24578999999977544443 11    22456666654433

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=97.57  E-value=0.00063  Score=66.13  Aligned_cols=109  Identities=18%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~----G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      +.++|+|||+    |++|..+.+.+.+.|+  +|+.+++..+..     .|+..+.+++|+-...|++++++| +..+..
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~   79 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ   79 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHHH
Confidence            4468999999    8899999999999887  577677654322     367778899998888999999997 778888


Q ss_pred             hhcccccccccCCCCCEEEEccCCCh-------hHHHHHHHHHHhcCCeEecC
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~-------~~~~~l~~~l~~~~~~~~~~  188 (358)
                      ++   ++..+. .-..++| ++.+..       ..++++.+..++.++.+++.
T Consensus        80 ~l---~e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP  127 (447)
T TIGR02717        80 VV---EECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLLGP  127 (447)
T ss_pred             HH---HHHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence            88   555543 3333333 233322       23567888888888887763

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.56  E-value=0.018  Score=53.82  Aligned_cols=264  Identities=17%  Similarity=0.267  Sum_probs=155.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh----C-----------------C----CccCCCHHHHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS----L-----------------G----AKYQPSPDEVA  124 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~----~-----------------g----~~~~~~~~~~~  124 (358)
                      .+|.|+|+|..+-.+|..+...+ ++|-+++|...+.+.+.+    .                 |    -....+.+++.
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~   81 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE   81 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence            47999999999999999999766 478889996655444321    0                 1    02355778888


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCC-------CCCCC
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAP-------VSGSK  194 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~-------~~~~~  194 (358)
                      .+=|.+|+||| ..+-..++   +++-. .++.=+.+|-+|..-... .-+...+.+.  .+.+++..       .+...
T Consensus        82 g~WdtlILavt-aDAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~  156 (429)
T PF10100_consen   82 GEWDTLILAVT-ADAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE  156 (429)
T ss_pred             ccccEEEEEec-hHHHHHHH---HhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence            88999999997 56666676   44432 233334555555433222 1233333332  23333321       11111


Q ss_pred             Cc------CCCCceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHH-----------------------
Q 018303          195 KP------AEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV-----------------------  243 (358)
Q Consensus       195 ~~------~~~~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~-----------------------  243 (358)
                      +.      +-+..+ ++.+  ++...++++..+++.+|-....+..+-.++...+..                       
T Consensus       157 ~~~~vlt~~vK~ki-YigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~  235 (429)
T PF10100_consen  157 QPNRVLTTAVKKKI-YIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP  235 (429)
T ss_pred             CcceehhhhhhceE-EEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence            11      011111 2222  256778999999999998777666543333322110                       


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc-------chhhhcc--cc-----------
Q 018303          244 -------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS-------APMYSLK--GP-----------  290 (358)
Q Consensus       244 -------------n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~-------s~~~~~~--~~-----------  290 (358)
                                   ..+..-|..+..|.+.+..+.|++.-.+.+.+....-.       ..-.+.+  .+           
T Consensus       236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR  315 (429)
T PF10100_consen  236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR  315 (429)
T ss_pred             ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence                         13444577889999999999999988888888763110       0000000  00           


Q ss_pred             --ccccCCCC-C---C----C----------------chhhH----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          291 --SMIESLYP-T---A----F----------------PLKHQ----QKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       291 --~~~~~~~~-~---~----~----------------~~~~~----~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                        .++-+-|+ |   |    |                .++.+    .+-+..+..+|+.+++++|.++...+.++.+.++
T Consensus       316 YtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~  395 (429)
T PF10100_consen  316 YTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ  395 (429)
T ss_pred             hhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence              11111110 0   0    0                12222    2236888999999999999999999888887764

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.56  E-value=0.00066  Score=61.91  Aligned_cols=112  Identities=19%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHH---CCCcEE-EEcCCccchhhHHhC-C---CccCCCHHHHhhcC--CEEEEeeCChhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLK---AGCDVT-VWNRTKSKCDPLISL-G---AKYQPSPDEVAASC--DVTFAMLADPES  139 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~---~g~~V~-~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~a--Divi~~vp~~~~  139 (358)
                      .-|+||+|+|.|++-+++.+..   .++.|. +++|+.+++..+++. +   .+.+.+.++++++.  |+|.+..|.+.+
T Consensus         6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH   85 (351)
T KOG2741|consen    6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH   85 (351)
T ss_pred             eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence            3589999999999999999864   367655 578988777776653 3   35678999999875  999999987766


Q ss_pred             HhhhhcccccccccCCCCC-EEEEcc-CCChhHHHHHHHHHHhcCCeEecC
Q 018303          140 AMDVACGKHGAASGMGPGK-GYVDVS-TVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~-~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      .+-+.       ..+..|+ +++.-- .....+.+.+.++.+.+++.+++.
T Consensus        86 ~evv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg  129 (351)
T KOG2741|consen   86 YEVVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG  129 (351)
T ss_pred             HHHHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence            55544       1223333 444332 234566778899999888777653

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.55  E-value=0.00028  Score=66.14  Aligned_cols=91  Identities=25%  Similarity=0.338  Sum_probs=57.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCcEEE-EcCCccchhhHHhC-----CC--ccCCCHHH-HhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLISL-----GA--KYQPSPDE-VAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~~~~~-----g~--~~~~~~~~-~~~~aDivi~~vp~~~~  139 (358)
                      ++|+|||+ |.+|+.+++.|... ++++.. +++. +..+.+.+.     +.  ..+.+.++ ..+++|+|++|+|.. .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~   80 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-V   80 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-H
Confidence            68999997 99999999999876 567654 5542 222222210     10  01223332 456799999999854 4


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      ..+++   ..   .++.|..|||.|.....
T Consensus        81 ~~~~v---~~---a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         81 SMDLA---PQ---LLEAGVKVIDLSADFRL  104 (343)
T ss_pred             HHHHH---HH---HHhCCCEEEECCcccCC
Confidence            34444   22   23578999999876544

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.54  E-value=0.00032  Score=65.81  Aligned_cols=93  Identities=20%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-C----C---Ccc-CCCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----G---AKY-QPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~----g---~~~-~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      ++|+|||+ |.+|+.+++.|... ++++. +++++....+.+.+ .    +   ..+ ..+.+++++++|+|++|+|. .
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~-~   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH-G   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc-h
Confidence            48999998 99999999999976 56777 44544322222221 1    1   111 11456666689999999984 4


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                      ....+.   ..+   ...|..|||.|...-.+
T Consensus        80 ~s~~~~---~~~---~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        80 VSAELA---PEL---LAAGVKVIDLSADFRLK  105 (346)
T ss_pred             HHHHHH---HHH---HhCCCEEEeCChhhhcC
Confidence            445554   333   34789999998764443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.54  E-value=0.00021  Score=63.67  Aligned_cols=95  Identities=16%  Similarity=0.051  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ...++.+-|-|+|.+|+.-|+.|+.+|..|++...+|=.+-...-+|..+ ..++|++++.||++.++.    -++++  
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTG----c~dii--  283 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTG----CKDII--  283 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccC----Ccchh--
Confidence            34566677779999999999999999999999988775443333346554 489999999999998874    34455  


Q ss_pred             cccccccCCCCCEEEEccCCCh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      ..+-+..|+.++++.|++.-..
T Consensus       284 ~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  284 TGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             hHHHHHhCcCCcEEeccccccc
Confidence            2556788999999999866543

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.54  E-value=0.00059  Score=63.00  Aligned_cols=64  Identities=14%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +||+|||+|.+|..+|..+...|.  ++.++|++.++++...    +.       .+....+.++ +++||+||++.-
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG   80 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG   80 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence            589999999999999999987774  6899999876543221    11       1222346665 799999999763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.53  E-value=0.0015  Score=63.12  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ++|.|||.|.+|.++|+.|.+.|++|.++|+++..........-....+.+...+++|+||.+.+.+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~   70 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK   70 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence            5899999999999999999999999999998765433211000011223344457799888887544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.52  E-value=0.00025  Score=65.55  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      ++.+++|.|||+|.||..+++.|.+.|. +|++++|+.... .+.+.    .....+...++|+||.|+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~----~~~~~~~~~~~DvVIs~t  234 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTV----VREELSFQDPYDVIFFGS  234 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhh----hhhhhhcccCCCEEEEcC
Confidence            5678899999999999999999999995 699999987531 11110    001114456899999873

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.51  E-value=9.3e-05  Score=60.10  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=48.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHh--------C--CCccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS--------L--GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~--------~--g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |||+|||+ |++|..+|..|...+  -++.++|+++++.+....        .  ......+..+.+++||+|+++..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            58999999 999999999998766  479999998765443221        0  12223355677889999999884

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.51  E-value=0.00014  Score=62.92  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+...+|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            3556799999999999999999999997 799999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.47  E-value=0.0013  Score=51.19  Aligned_cols=85  Identities=22%  Similarity=0.391  Sum_probs=59.0

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHhhhh
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~~~~  144 (358)
                      |-|+|+|.+|..+++.|.+.+.+|.+.+++++..+.+.+.+...    ..+.+.+    ++++|.|+++++.+.....+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            56899999999999999997779999999999888888776432    1222222    467999999997654444443


Q ss_pred             cccccccccCCCCCEEE
Q 018303          145 CGKHGAASGMGPGKGYV  161 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi  161 (358)
                          ..+..+.+...++
T Consensus        81 ----~~~r~~~~~~~ii   93 (116)
T PF02254_consen   81 ----LLARELNPDIRII   93 (116)
T ss_dssp             ----HHHHHHTTTSEEE
T ss_pred             ----HHHHHHCCCCeEE
Confidence                2334444555555

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.47  E-value=0.00081  Score=61.36  Aligned_cols=115  Identities=16%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCcc---chhhHHhC-C------CccCCCH------HHHhhcCCE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G------AKYQPSP------DEVAASCDV  129 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~---~~~~~~~~-g------~~~~~~~------~~~~~~aDi  129 (358)
                      +..++++.|+|+|..+++++..+...|. +|.+++|+++   +.+.+.+. +      +.. .++      .+.+.++|+
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDi  199 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADI  199 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCE
Confidence            3566799999999999999999998886 7999999853   55555431 1      111 222      234567999


Q ss_pred             EEEeeCChhh--HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          130 TFAMLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       130 vi~~vp~~~~--~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ||.++|....  .....   ..-...++++.++.|+.=.+..+  .+.+..+++|...++
T Consensus       200 vINaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  254 (288)
T PRK12749        200 LTNGTKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTID  254 (288)
T ss_pred             EEECCCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCccC--HHHHHHHHCCCeEEC
Confidence            9999985432  11111   00113467888899886544332  466666666665554

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.46  E-value=0.00025  Score=65.54  Aligned_cols=67  Identities=12%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             EEEEcCChhHHHHHHHHHH-CCCcEEE-EcCCccchhhHHh-------------------CCCccCCCHHHHhhcCCEEE
Q 018303           73 IGFLGMGIMGTPMAQNLLK-AGCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDivi  131 (358)
                      |||+|+|+||+.+++.+.. .+++|.+ .|.+++....+..                   .++....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6899999999999999875 3567654 6665553323322                   12333557899999999999


Q ss_pred             EeeCChhh
Q 018303          132 AMLADPES  139 (358)
Q Consensus       132 ~~vp~~~~  139 (358)
                      .|+|....
T Consensus        81 e~Tp~~~~   88 (333)
T TIGR01546        81 DATPGGIG   88 (333)
T ss_pred             ECCCCCCC
Confidence            99986543

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.45  E-value=0.00022  Score=59.19  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |||+|||+ |..|+.+++-+...||+|+..-|++.+......     ..+.-.+++.+.+..-|+||.+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            68999998 999999999999999999999999987654321     112222233466778899998874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.45  E-value=0.00033  Score=68.33  Aligned_cols=67  Identities=25%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCcc-------CCCHHHH-hhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY-------QPSPDEV-AASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~-------~~~~~~~-~~~aDivi~~vp~~  137 (358)
                      |+|.|+|+|.+|+.+++.|...|++|.++++++++.+.+.+ .++..       ...+.++ +.++|.|+++++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~   76 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD   76 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence            58999999999999999999999999999999988777654 33221       1123344 67899999999753

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.44  E-value=0.0011  Score=66.48  Aligned_cols=86  Identities=17%  Similarity=0.294  Sum_probs=63.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH-----hhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV-----AASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~-----~~~aDivi~~vp~~~~~~  141 (358)
                      -+|-|+|+|++|+.+++.|.+.|++|.+.|.++++.+.+++.|...    ..+. +.     ++++|.++++++++.+..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~-~~L~~a~i~~a~~viv~~~~~~~~~  496 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANE-EIMQLAHLDCARWLLLTIPNGYEAG  496 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCH-HHHHhcCccccCEEEEEcCChHHHH
Confidence            4789999999999999999999999999999999988887765422    1222 22     357999999998766655


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      .++   ....+ ..++..++
T Consensus       497 ~iv---~~~~~-~~~~~~ii  512 (558)
T PRK10669        497 EIV---ASARE-KRPDIEII  512 (558)
T ss_pred             HHH---HHHHH-HCCCCeEE
Confidence            555   32322 34555555

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.43  E-value=0.00071  Score=68.32  Aligned_cols=88  Identities=17%  Similarity=0.240  Sum_probs=65.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~  141 (358)
                      ..+|-|+|+|++|+.+++.|.+.|+++++.|.|+++.+.+++.|...    .++.+-+    ++++|.++++++++....
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            35799999999999999999999999999999999988887766432    1222211    457999999998766665


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      .++   .. ...+.|+..++
T Consensus       480 ~i~---~~-~r~~~p~~~Ii  495 (601)
T PRK03659        480 KIV---EL-CQQHFPHLHIL  495 (601)
T ss_pred             HHH---HH-HHHHCCCCeEE
Confidence            555   22 33455665666

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.42  E-value=0.00078  Score=60.82  Aligned_cols=77  Identities=23%  Similarity=0.318  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||- ..+|+.++..|...|..|+++....              .++.+..++||+||.+++.+.    ++ 
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i-  212 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI-  212 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc-
Confidence            578899999998 5679999999999999999886532              367788999999999998653    33 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +   .+++++|+++||++..
T Consensus       213 -~---~~~vk~GavVIDVGin  229 (287)
T PRK14173        213 -T---PEMVRPGAVVVDVGIN  229 (287)
T ss_pred             -C---HHHcCCCCEEEEccCc
Confidence             1   2347899999999754

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.41  E-value=0.00079  Score=60.61  Aligned_cols=77  Identities=22%  Similarity=0.283  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||- ..+|+.++..|...|..|++++...              .++.+..++||+||.+++.+..    + 
T Consensus       156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i-  216 (284)
T PRK14177        156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I-  216 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c-
Confidence            678899999998 5579999999999999999987532              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   ...+++|+++||++..
T Consensus       217 -~---~~~ik~gavVIDvGin  233 (284)
T PRK14177        217 -K---ADWISEGAVLLDAGYN  233 (284)
T ss_pred             -C---HHHcCCCCEEEEecCc
Confidence             1   2357899999999754

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.41  E-value=0.0007  Score=60.38  Aligned_cols=77  Identities=25%  Similarity=0.352  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +++++++.|||-+++ |+.++..|...++.|+++....              .++.+..+++|+|+.++-.+.    ++ 
T Consensus       153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~----~i-  213 (283)
T COG0190         153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPH----FI-  213 (283)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCcc----cc-
Confidence            678999999999875 9999999999999999997643              367788999999999996543    33 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   .+++++|+++||++..
T Consensus       214 -~---~d~vk~gavVIDVGin  230 (283)
T COG0190         214 -K---ADMVKPGAVVIDVGIN  230 (283)
T ss_pred             -c---cccccCCCEEEecCCc
Confidence             1   2458999999998654

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.40  E-value=0.0008  Score=61.05  Aligned_cols=77  Identities=25%  Similarity=0.334  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ -+|+.++..|...|..|+++...              +.++.+..++||+||.+++.+.    ++ 
T Consensus       155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~----~i-  215 (297)
T PRK14186        155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPN----LI-  215 (297)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcC----cc-
Confidence            5788999999985 57999999999999999998643              1367788999999999998653    33 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   ..++++|+++||++..
T Consensus       216 -~---~~~ik~gavVIDvGin  232 (297)
T PRK14186        216 -G---AEMVKPGAVVVDVGIH  232 (297)
T ss_pred             -C---HHHcCCCCEEEEeccc
Confidence             1   2357899999999754

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.40  E-value=0.00082  Score=60.39  Aligned_cols=76  Identities=25%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++...              +.++.+..++||+||.+++.+..    + 
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~----i-  215 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKF----I-  215 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc----c-
Confidence            5788999999985 57999999999999999998753              23677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       +   .+.+++|+++||++.
T Consensus       216 -~---~~~ik~gavVIDvGi  231 (278)
T PRK14172        216 -D---EEYVKEGAIVIDVGT  231 (278)
T ss_pred             -C---HHHcCCCcEEEEeec
Confidence             1   134789999999954

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.39  E-value=0.00086  Score=60.39  Aligned_cols=77  Identities=21%  Similarity=0.342  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+..    + 
T Consensus       153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i-  213 (282)
T PRK14169        153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I-  213 (282)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence            5788999999985 579999999999999999886432              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +   .+++++|+++||++..
T Consensus       214 -~---~~~vk~GavVIDvGin  230 (282)
T PRK14169        214 -G---ADAVKPGAVVIDVGIS  230 (282)
T ss_pred             -C---HHHcCCCcEEEEeecc
Confidence             1   1357899999999753

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.39  E-value=0.00088  Score=60.32  Aligned_cols=78  Identities=24%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+.-    + 
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i-  214 (284)
T PRK14170        154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V-  214 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c-
Confidence            6789999999985 569999999999999999886421              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccCCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       .   .+.+++|+++||++...
T Consensus       215 -~---~~~vk~GavVIDvGin~  232 (284)
T PRK14170        215 -K---KDYIKPGAIVIDVGMDR  232 (284)
T ss_pred             -C---HHHcCCCCEEEEccCcc
Confidence             1   13478999999997543

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.37  E-value=0.00043  Score=65.94  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCcEEEEcCCccchhhHHhCCCc---c---------------C--CCHHH---Hhhc
Q 018303           71 GRIGFLGMGIMGT-PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y---------------Q--PSPDE---VAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~-~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~  126 (358)
                      |||.++|+|+||+ .+...|...|++|+++|+++..++.+.++|..   .               .  .+.++   .+.+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~   80 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE   80 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence            5899999999999 45888899999999999887777777665421   0               1  01122   3347


Q ss_pred             CCEEEEeeCChhhHhhhh
Q 018303          127 CDVTFAMLADPESAMDVA  144 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~  144 (358)
                      +|+|++++. +..++.+.
T Consensus        81 ~dlvt~~v~-~~~~~s~~   97 (381)
T PRK02318         81 ADLVTTAVG-PNILPFIA   97 (381)
T ss_pred             CCEEEeCCC-cccchhHH
Confidence            899998884 44444444

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.37  E-value=0.00092  Score=60.19  Aligned_cols=76  Identities=24%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+..    + 
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i-  214 (282)
T PRK14166        154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L-  214 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c-
Confidence            5788999999985 579999999999999999887532              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       +.   ..+++|+++||++.
T Consensus       215 -~~---~~vk~GavVIDvGi  230 (282)
T PRK14166        215 -RS---DMVKEGVIVVDVGI  230 (282)
T ss_pred             -CH---HHcCCCCEEEEecc
Confidence             11   34789999999974

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.36  E-value=0.00096  Score=60.20  Aligned_cols=76  Identities=22%  Similarity=0.395  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ -+|+.++..|...|..|+++...              +.++.+..++||+||.++..+.    ++ 
T Consensus       156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~----~i-  216 (288)
T PRK14171        156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPL----KL-  216 (288)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCC----cc-
Confidence            5788999999985 56999999999999999988742              2367788999999999998653    33 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       .   ...+++|+++||++-
T Consensus       217 -~---~~~vk~GavVIDvGi  232 (288)
T PRK14171        217 -T---AEYFNPESIVIDVGI  232 (288)
T ss_pred             -C---HHHcCCCCEEEEeec
Confidence             1   134789999999964

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.35  E-value=0.00061  Score=62.86  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC-----CH-HHHhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-----SP-DEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~-----~~-~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      .+.+|+|+|+|.+|..-.+.+++.|.+|+++++++++.+...+.|...+-     +. +++-+.+|+++.++| +.....
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~  244 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP  244 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence            35799999999999998888888999999999999988777766543211     11 122222788888876 544444


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+       ..++++..++-++-
T Consensus       245 ~l-------~~l~~~G~~v~vG~  260 (339)
T COG1064         245 SL-------KALRRGGTLVLVGL  260 (339)
T ss_pred             HH-------HHHhcCCEEEEECC
Confidence            43       45566666665543

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.34  E-value=0.00096  Score=60.19  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||- ..+|+.++..|...|..|+++...              +.++.+.+++||+||.+++.+.    ++ 
T Consensus       155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~----~i-  215 (284)
T PRK14190        155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPK----LI-  215 (284)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCC----cC-
Confidence            578899999998 567999999999999999998642              2367788999999999997554    34 


Q ss_pred             ccccccccCCCCCEEEEccCCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       +.   +.+++|+++||++...
T Consensus       216 -~~---~~ik~gavVIDvGi~~  233 (284)
T PRK14190        216 -TA---DMVKEGAVVIDVGVNR  233 (284)
T ss_pred             -CH---HHcCCCCEEEEeeccc
Confidence             22   3468999999997543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.34  E-value=0.00099  Score=59.99  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++++++|.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+..    + 
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i-  215 (282)
T PRK14180        155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I-  215 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C-
Confidence            5788999999985 579999999999999999986532              3677788999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       .   ...+++|+++||++.
T Consensus       216 -~---~~~vk~gavVIDvGi  231 (282)
T PRK14180        216 -T---ADMVKEGAVVIDVGI  231 (282)
T ss_pred             -C---HHHcCCCcEEEEecc
Confidence             1   134789999999964

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.34  E-value=0.00062  Score=58.81  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCC-CccCC-C-HHHHhhcCCEEEEeeCChhhHhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQP-S-PDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g-~~~~~-~-~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ++++++|.|||.|.+|...++.|.+.|.+|++++++... ...+.+.+ +.... . ..+.+.++|+||.++. ++++..
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~-d~elN~   85 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN-DPRVNE   85 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC-CHHHHH
Confidence            678899999999999999999999999999999876432 22333322 21110 1 1234678898888885 455555


Q ss_pred             hh
Q 018303          143 VA  144 (358)
Q Consensus       143 ~~  144 (358)
                      .+
T Consensus        86 ~i   87 (202)
T PRK06718         86 QV   87 (202)
T ss_pred             HH
Confidence            55

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.32  E-value=0.0011  Score=59.65  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHH--CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++.++++.|||- ..+|+.++..|..  .+..|+++...              +.++.+..++||+||.+++.+.    +
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~----~  216 (284)
T PRK14193        155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAH----L  216 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcC----c
Confidence            578899999998 5679999999988  68899988653              2367888999999999998653    3


Q ss_pred             hcccccccccCCCCCEEEEccCCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      +  .   ...+++|+++||++...
T Consensus       217 i--~---~~~ik~GavVIDvGin~  235 (284)
T PRK14193        217 V--T---ADMVKPGAAVLDVGVSR  235 (284)
T ss_pred             c--C---HHHcCCCCEEEEccccc
Confidence            3  1   23578999999997543

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.31  E-value=0.0028  Score=64.94  Aligned_cols=119  Identities=11%  Similarity=0.069  Sum_probs=91.5

Q ss_pred             EEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcC--------CCC
Q 018303          130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG  200 (358)
Q Consensus       130 vi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--------~~~  200 (358)
                      ||+|+| ...+..++   +++.+.++++++|.|+++.+....+++.+.+......|++ +|+.|.+...        -.+
T Consensus         1 vila~P-v~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~   76 (673)
T PRK11861          1 VLLAAP-VAQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG   76 (673)
T ss_pred             CEEEcC-HHHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence            689997 78899999   8888889999999999999987777776666543345776 4777766443        246


Q ss_pred             ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHH
Q 018303          201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA  252 (358)
Q Consensus       201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~  252 (358)
                      ..++++..   +++.++.+.++++.+|.+++.+.+..+...+.+++.+-.....+
T Consensus        77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~  131 (673)
T PRK11861         77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA  131 (673)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH
Confidence            66666643   67788999999999999999999988888888887665444443

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.31  E-value=0.0013  Score=64.44  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~  133 (358)
                      ++.+++|.|||.|..|.+.|+.|.+.|++|.++|..+.....+...|+.......+-+.++|+||..
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s   72 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS   72 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence            3556799999999999999999999999999999765444444455665432222335679988763

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.30  E-value=0.0012  Score=59.79  Aligned_cols=77  Identities=25%  Similarity=0.295  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++||+||.+++.+..    + 
T Consensus       157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i-  217 (294)
T PRK14187        157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V-  217 (294)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence            5788999999985 579999999999999999987532              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   ..++++|+++||++..
T Consensus       218 -~---~~~ik~gaiVIDVGin  234 (294)
T PRK14187        218 -K---YSWIKKGAIVIDVGIN  234 (294)
T ss_pred             -C---HHHcCCCCEEEEeccc
Confidence             1   1347899999999643

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.30  E-value=0.0012  Score=59.89  Aligned_cols=77  Identities=26%  Similarity=0.376  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+. +|+.++..|...|..|+++...              +.++.+.+++||+||.++..+    +++ 
T Consensus       164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~----~~i-  224 (299)
T PLN02516        164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQA----MMI-  224 (299)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCc----Ccc-
Confidence            67889999999855 6999999999999999998653              236788899999999999764    344 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   .+++++|+++||++..
T Consensus       225 -~---~~~vk~gavVIDvGin  241 (299)
T PLN02516        225 -K---GDWIKPGAAVIDVGTN  241 (299)
T ss_pred             -C---HHHcCCCCEEEEeecc
Confidence             2   2458999999999753

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.29  E-value=0.0026  Score=51.65  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhhH
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPESA  140 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~~~~~  140 (358)
                      +|.|||+|.+|..+++.|...|. ++.++|.+.-....+..+        |-..+....+.++  ..++-+...+.....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            58999999999999999999997 699998764332222211        2111111222222  124444444321111


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      ..       ....+++-.++|++... ......+.+.+.+.++.++++...+
T Consensus        81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g  124 (143)
T cd01483          81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            11       12234566788877655 5556678888888888888877655

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.29  E-value=0.0021  Score=53.16  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC-CccC-CCH-HHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PSP-DEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-~~~~-~~~-~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++++++|.|||.|.+|...++.|.+.|++|+++++.  ..+.+.+.+ +.+. ..+ ++-++++|+|+.++. +.++...
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e~N~~   86 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHAVNMM   86 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHHHHHH
Confidence            688899999999999999999999999999999643  334443321 1110 011 122578999999984 5555555


Q ss_pred             h
Q 018303          144 A  144 (358)
Q Consensus       144 ~  144 (358)
                      +
T Consensus        87 i   87 (157)
T PRK06719         87 V   87 (157)
T ss_pred             H
Confidence            4

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.28  E-value=0.0023  Score=62.55  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccC--CCHHHHhhcCCEEEEeeCCh---
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAMLADP---  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~---  137 (358)
                      +.+++|+|+|+|..|.++|+.|.+.|++|.++|+++...     +.+...|+...  ....+.+.++|+||+.-.-+   
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~   91 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDS   91 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCc
Confidence            345689999999999999999999999999999865321     23555565442  22235467899988873111   


Q ss_pred             hhHhhhh------cccccccccCCCCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303          138 ESAMDVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       138 ~~~~~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  183 (358)
                      +......      .+..+++....+..+|--+ |.|...+..-+...|...+.
T Consensus        92 p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         92 PELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             hHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            1221111      0111122122222333333 55666677777777776554

>PLN02602 lactate dehydrogenase

Probab=97.27  E-value=0.0025  Score=59.67  Aligned_cols=64  Identities=16%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC----C-Ccc--CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL----G-AKY--QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~----g-~~~--~~~~~~~~~~aDivi~~vp  135 (358)
                      +||+|||+|++|..+|..+...+.  ++.++|+++++++...    +.    + ...  ..+.++ +++||+||++.-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence            699999999999999999987774  6899999876553321    10    1 122  234444 789999999964

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.27  E-value=0.0011  Score=61.30  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=46.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCc--cchhhH----Hh----CC----CccCCCHHHHhhcCCEEEEe
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDPL----IS----LG----AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~--~~~~~~----~~----~g----~~~~~~~~~~~~~aDivi~~  133 (358)
                      |+|+|||+ |.+|..++..+...|+  +|.++|+++  ++.+..    .+    .+    +....+. +.+++||+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            58999998 9999999999999886  499999954  333211    11    11    2223354 458999999999


Q ss_pred             eCC
Q 018303          134 LAD  136 (358)
Q Consensus       134 vp~  136 (358)
                      ...
T Consensus        80 ag~   82 (309)
T cd05294          80 AGV   82 (309)
T ss_pred             cCC
Confidence            953

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.27  E-value=0.00047  Score=53.05  Aligned_cols=83  Identities=12%  Similarity=0.060  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHCCCcEEEEcCCccchhhHH---hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCC
Q 018303           80 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP  156 (358)
Q Consensus        80 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~  156 (358)
                      +-+..+++.|.+.|.+|.+||+.-.......   ..++...+++++.++.+|.||++++.+ +...+-  -+++...|++
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~--~~~~~~~~~~   93 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELD--WEEIAKLMRK   93 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCG--HHHHHHHSCS
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccC--HHHHHHhcCC
Confidence            3467899999999999999999766544333   135777789999999999999999644 444432  1556667788


Q ss_pred             CCEEEEccC
Q 018303          157 GKGYVDVST  165 (358)
Q Consensus       157 ~~~vi~~s~  165 (358)
                      +.+|+|+-+
T Consensus        94 ~~~iiD~~~  102 (106)
T PF03720_consen   94 PPVIIDGRN  102 (106)
T ss_dssp             SEEEEESSS
T ss_pred             CCEEEECcc
Confidence            899999854

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.27  E-value=0.00085  Score=63.60  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCC-------CccCCCHH-HHhhcCCEEEEeeCChh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPD-EVAASCDVTFAMLADPE  138 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~-~~~~~aDivi~~vp~~~  138 (358)
                      ..++|+|+|+ |.+|+.+.+.|... +++|..+.++....+.+.+..       .....+.+ +.++++|+|++++| ..
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp-~~  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP-HG  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC-HH
Confidence            4569999998 99999999999887 678887766543333222111       11112222 22478999999997 44


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      ...+++   +    .+..|..|||.|...-.+.
T Consensus       116 ~s~~i~---~----~~~~g~~VIDlSs~fRl~~  141 (381)
T PLN02968        116 TTQEII---K----ALPKDLKIVDLSADFRLRD  141 (381)
T ss_pred             HHHHHH---H----HHhCCCEEEEcCchhccCC
Confidence            555555   3    3456899999987654443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.26  E-value=0.0014  Score=60.28  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             EEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhC--------C---CccCCCHHHHhhcCCEEEEeeCC
Q 018303           73 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G---AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g---~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|||+|.+|..+|..++..|  .++.++|++.++++.....        .   +....+ .+.+++||+||++...
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence            689999999999999999888  5799999988765543321        0   111233 4578899999999964

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.26  E-value=0.0013  Score=60.88  Aligned_cols=76  Identities=22%  Similarity=0.407  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ -+|+.++..|...|..|+++....              .++.+..++|||||.+++.+..    + 
T Consensus       228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i-  288 (364)
T PLN02616        228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V-  288 (364)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C-
Confidence            6789999999985 569999999999999999986432              3677889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       .   .+.+++|+++||++-
T Consensus       289 -~---~d~vK~GAvVIDVGI  304 (364)
T PLN02616        289 -R---GSWIKPGAVVIDVGI  304 (364)
T ss_pred             -C---HHHcCCCCEEEeccc
Confidence             1   234789999999964

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.26  E-value=0.001  Score=62.27  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=67.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC----------CCcEE-EEcCCcc----------chhhHHh-CCC-c------cCCCHH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLIS-LGA-K------YQPSPD  121 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~----------g~~V~-~~~~~~~----------~~~~~~~-~g~-~------~~~~~~  121 (358)
                      .+|+|+|+|.||+.+++.+.+.          +.+|. ++|++..          ....+.+ .+. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4899999999999999999764          34544 4675321          1111111 121 1      124788


Q ss_pred             HHhh--cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCC-hhHHHHHHHHHHhcCCeEe
Q 018303          122 EVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFL  186 (358)
Q Consensus       122 ~~~~--~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~  186 (358)
                      +++.  +.|+|+.|+|...+.....  .+-....+..|..||...... ....+++.+..++++..+.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~  148 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR  148 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence            8874  5899999998644422111  012235677888888543222 1234577777777776553

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.0016  Score=58.62  Aligned_cols=77  Identities=25%  Similarity=0.301  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..++++.|||-+ .+|+.++..|...|..|+++...              +.++.+..++||+||.+++.+.    ++ 
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~----~i-  214 (282)
T PRK14182        154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAE----LV-  214 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcC----cc-
Confidence            5788999999985 57999999999999999998653              2367788899999999997543    33 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   .+++++|+++||++..
T Consensus       215 -~---~~~ik~gaiVIDvGin  231 (282)
T PRK14182        215 -K---GAWVKEGAVVIDVGMN  231 (282)
T ss_pred             -C---HHHcCCCCEEEEeece
Confidence             1   2357899999999643

>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases

Probab=97.24  E-value=0.0039  Score=49.81  Aligned_cols=127  Identities=13%  Similarity=0.131  Sum_probs=75.7

Q ss_pred             EEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303          204 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  283 (358)
Q Consensus       204 ~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~  283 (358)
                      +.+.|+++..+.++.+++.+|.+++.+.+.. -..++.+.-+..++...++..+..++++.|++.++..+++.      |
T Consensus         4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~-r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P   76 (132)
T PF10728_consen    4 FAIEGDEEALEVLQELAKELGGRPFEIDSEQ-RALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P   76 (132)
T ss_dssp             EEEEESHHHHHHHHHHHHHTTSEEEE--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred             EEEecCHHHHHHHHHHHHHhCCceEEeCHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence            3444599999999999999999999886644 66666776666777777778888999999999966444443      2


Q ss_pred             hhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018303          284 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  337 (358)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a  337 (358)
                      +.+.....+.+.......+.+..+.|...+.+-.+.+.-.-|-...++..+.+.
T Consensus        77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~~  130 (132)
T PF10728_consen   77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSRA  130 (132)
T ss_dssp             HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            222212222221111122334556677777666666644335555555555443

; PDB: 3D1L_A 2I76_A 3DFU_A.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.22  E-value=0.0017  Score=58.63  Aligned_cols=77  Identities=22%  Similarity=0.318  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|||-+ .+|+.++..|...    +..|+++....              .++.+.+++||+||.+++.+.   
T Consensus       150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~---  212 (287)
T PRK14181        150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL---  212 (287)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence            5788999999985 5699999999987    78899876421              367888999999999998653   


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ++  .   .+++++|+++||++..
T Consensus       213 -~i--~---~~~ik~GavVIDvGin  231 (287)
T PRK14181        213 -FI--K---EEMIAEKAVIVDVGTS  231 (287)
T ss_pred             -cc--C---HHHcCCCCEEEEeccc
Confidence             33  1   2357899999999743

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.22  E-value=0.0011  Score=58.82  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC-----cc-----chhhH---Hh-CC------------CccCCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS-----KCDPL---IS-LG------------AKYQPS  119 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~-----~~-----~~~~~---~~-~g------------~~~~~~  119 (358)
                      ++.++||.|.|+|++|+..|+.|.+.|.+|+ +.|.+     ++     .+..+   .+ .+            .... +
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~  113 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E  113 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence            5678899999999999999999999999988 55522     11     11111   11 11            2222 3


Q ss_pred             HHHH-hhcCCEEEEeeCChhhHhhhhcccccccccCC--CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          120 PDEV-AASCDVTFAMLADPESAMDVACGKHGAASGMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       120 ~~~~-~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~--~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .+++ ..+|||++-|-     +.+.+  +.+..+.++  .=++|+..++++. +. +-.+.|.++|+.++.
T Consensus       114 ~~~~~~~~~DIliPcA-----l~~~I--~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~vvP  175 (254)
T cd05313         114 GKKPWEVPCDIAFPCA-----TQNEV--DAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVLFAP  175 (254)
T ss_pred             CcchhcCCCcEEEecc-----ccccC--CHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence            3343 34699988775     44444  333334442  2345665556554 44 567788899988874

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.22  E-value=0.0015  Score=60.17  Aligned_cols=77  Identities=22%  Similarity=0.349  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-+ .+|+.++..|...|..|+++....              .++.+..++|||||.+++.+.-    + 
T Consensus       211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v-  271 (345)
T PLN02897        211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V-  271 (345)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence            6789999999985 469999999999999999886432              3577889999999999986543    3 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   .+++++|+++||++..
T Consensus       272 -~---~d~vk~GavVIDVGin  288 (345)
T PLN02897        272 -R---GSWLKPGAVVIDVGTT  288 (345)
T ss_pred             -C---HHHcCCCCEEEEcccc
Confidence             1   2357899999999753

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.21  E-value=0.0029  Score=62.38  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC--CHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivi~~vp  135 (358)
                      .+++|.|+|+|..|.+.++.|...|.+|+++|+++...+.+.+.|+....  ...+.++++|+||.+-.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG   79 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG   79 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence            45789999999999999999999999999999876555545555664432  23455678998888763

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.20  E-value=0.0021  Score=58.17  Aligned_cols=108  Identities=18%  Similarity=0.233  Sum_probs=72.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHH-hhcCCEEEEeeCChhhH--h--h
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPESA--M--D  142 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivi~~vp~~~~~--~--~  142 (358)
                      ++++.|+|+|..+++++..|...|. +|.+++|++++.+.+.+. +....   +++ ...+|+||.|+|....-  .  .
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~  198 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK  198 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence            3589999999999999999999997 599999999888777653 21111   111 24589999999854321  0  0


Q ss_pred             -hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          143 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       143 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       -+  +   ...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       199 ~pi--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~  237 (272)
T PRK12550        199 LAF--P---EAEIDAASVVFDVVALPAET--PLIRYARARGKTVIT  237 (272)
T ss_pred             CCC--C---HHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEeC
Confidence             11  1   23467788999986654432  466666666655543

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.20  E-value=0.00089  Score=50.46  Aligned_cols=72  Identities=24%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CeEEEEcCChhHHHHHHHH-HHCCCcE-EEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNL-LKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l-~~~g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~  144 (358)
                      .++.|+|+|+.|++++... ...|+.+ .++|.++++..... .|+..+.+.+++.+.  .|+-++++| +...+.++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~   79 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA   79 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence            3799999999999998554 4467664 56888887654221 256667788888877  999999998 56666666

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.20  E-value=0.00069  Score=63.28  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+..++|.|||+|.+|+.+|..|+..|+ ++.++|++.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4566799999999999999999999997 788899875

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.18  E-value=0.0021  Score=65.11  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=63.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~  141 (358)
                      ..+|-|+|+|++|+.+++.|.+.|.++++.|.++++++.+++.|...    .++.+-+    ++++|.++++++++....
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            35899999999999999999999999999999999998887766432    1222211    347999999997665555


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      .++   . ....+.|+..++
T Consensus       480 ~i~---~-~ar~~~p~~~ii  495 (621)
T PRK03562        480 QLV---E-LVKEHFPHLQII  495 (621)
T ss_pred             HHH---H-HHHHhCCCCeEE
Confidence            554   2 233344554455

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.17  E-value=0.0054  Score=55.84  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+|.|.|. |++|..+.+.|.++|++ .+|-.+|.. .+.+  .|+..+.++.|+-+.  .|+.++++| ...+.+++  
T Consensus         9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l--   82 (291)
T PRK05678          9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI--   82 (291)
T ss_pred             CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH--
Confidence            37999998 88999999999999987 444333331 1111  367788899999887  899999997 67777777  


Q ss_pred             cccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                       ++..+. .-...+|- +.+ ...+++++.+..++.++.+++...
T Consensus        83 -~e~~~~-gvk~avI~-s~Gf~~~~~~~l~~~a~~~girvlGPNc  124 (291)
T PRK05678         83 -LEAIDA-GIDLIVCI-TEGIPVLDMLEVKAYLERKKTRLIGPNC  124 (291)
T ss_pred             -HHHHHC-CCCEEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCC
Confidence             555542 22233333 444 344445888888888888887443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.15  E-value=0.0025  Score=63.29  Aligned_cols=113  Identities=13%  Similarity=0.055  Sum_probs=72.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC--ccCCCHHHHh-hcCCEEEEeeCChhhH--
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--KYQPSPDEVA-ASCDVTFAMLADPESA--  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~-~~aDivi~~vp~~~~~--  140 (358)
                      +..++++.|+|+|.+|++++..|+..|++|.+++|+.++.+.+.+. +.  ....+..+.. ..+|+|+.++|....-  
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~  455 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV  455 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence            3566899999999999999999999999999999998877766542 21  1112222222 3578888888754321  


Q ss_pred             hh-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          141 MD-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       141 ~~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      .. -+  +   ...+++..+++|+.-.+..+  .+.+..++.|...+
T Consensus       456 ~~~pl--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~  495 (529)
T PLN02520        456 DETPI--S---KHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV  495 (529)
T ss_pred             CCCcc--c---HhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence            11 11  1   13466788899886654432  35555555555444

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.12  E-value=0.00059  Score=52.17  Aligned_cols=73  Identities=22%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++++++|.|||.|.+|..=++.|.+.|.+|+++++..   ... +..+.. ....++.++.+|+|+.+++ ++.+...+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~~~i~~~~~~~~~~l~~~~lV~~at~-d~~~n~~i   77 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-EGLIQLIRREFEEDLDGADLVFAATD-DPELNEAI   77 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-HTSCEEEESS-GGGCTTESEEEE-SS--HHHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-hhHHHHHhhhHHHHHhhheEEEecCC-CHHHHHHH
Confidence            5778899999999999999999999999999999875   111 111111 1122345677888888885 44444444

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.11  E-value=0.0063  Score=55.27  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=78.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+|.|.|. |.+|..+-+.+...|++ .++..+|.+ .+.  -.|+..+.++.|+.+.  .|+.++++| ...+.+++  
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l--   80 (286)
T TIGR01019         7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI--   80 (286)
T ss_pred             CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence            47999997 99999999999999988 555665552 111  1377888899998876  799999997 67778787  


Q ss_pred             cccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                       ++..+. .-...+|- +.+ ...+++++.+..++.++.+++..
T Consensus        81 -~e~~~~-Gvk~avIi-s~Gf~e~~~~~l~~~a~~~girilGPN  121 (286)
T TIGR01019        81 -FEAIDA-GIELIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPN  121 (286)
T ss_pred             -HHHHHC-CCCEEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence             555442 22233332 444 33446788888888888888643

ATP citrate lyases appear to form an outgroup.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.11  E-value=0.003  Score=60.76  Aligned_cols=113  Identities=15%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEE-cC----------CccchhhHHhC------------CCccCCCHHHH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-NR----------TKSKCDPLISL------------GAKYQPSPDEV  123 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~-~~----------~~~~~~~~~~~------------g~~~~~~~~~~  123 (358)
                      ++.++||.|.|+|++|+.+|+.|.+.|.+|+++ |.          +.+.+....+.            +.... +.+++
T Consensus       229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i  307 (445)
T PRK09414        229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSP  307 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccc
Confidence            577899999999999999999999999998876 62          32222111111            11111 33344


Q ss_pred             hh-cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          124 AA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       124 ~~-~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +. +|||++-|.....-+.+-.   ..+.+  ..-++|+..++++. + .+-.+.|.++|+.++.
T Consensus       308 ~~~d~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~p~-t-~~A~~~L~~rGI~~vP  365 (445)
T PRK09414        308 WSVPCDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANMPS-T-PEAIEVFLEAGVLFAP  365 (445)
T ss_pred             cccCCcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCCCC-C-HHHHHHHHHCCcEEEC
Confidence            33 6999999986444444433   22211  02245665566655 3 3466788888988763

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.11  E-value=0.0021  Score=57.14  Aligned_cols=111  Identities=19%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEE--------cCCccchhhHHh----CCC--ccCC----------CHH-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD-  121 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~--------~~~~~~~~~~~~----~g~--~~~~----------~~~-  121 (358)
                      .++++++.|-|+|++|...|+.|.+.|.+|.+.        |++.-..+.+.+    .+.  ....          +.+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            477889999999999999999999999887654        444333333322    122  1111          221 


Q ss_pred             HHh-hcCCEEEEeeCChhhHhhhhcccccccc-cCCCCC-EEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          122 EVA-ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       122 ~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~-~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +++ .+|||++-|--     .+.+  +++... .+++++ +|+.-++. |...++.. .|.++|+.++
T Consensus       109 ~il~~~~DiliP~A~-----~~~I--~~~~~~~~i~~~akiIvegAN~-p~t~~a~~-~L~~rGI~vi  167 (244)
T PF00208_consen  109 EILSVDCDILIPCAL-----GNVI--NEDNAPSLIKSGAKIIVEGANG-PLTPEADE-ILRERGILVI  167 (244)
T ss_dssp             HGGTSSSSEEEEESS-----STSB--SCHHHCHCHHTT-SEEEESSSS-SBSHHHHH-HHHHTT-EEE
T ss_pred             ccccccccEEEEcCC-----CCee--CHHHHHHHHhccCcEEEeCcch-hccHHHHH-HHHHCCCEEE
Confidence            454 47999999863     2333  233334 455555 44444454 44454554 8888887765

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK05086 malate dehydrogenase; Provisional

Probab=97.10  E-value=0.005  Score=56.96  Aligned_cols=66  Identities=20%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH---CCCcEEEEcCCccch---hhHHhCC--Ccc----CCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~---~g~~V~~~~~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|||+ |.+|+.++..+..   .++++.++|+++...   -.+.+.+  ...    .+++.+.++++|+||++.-.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            58999999 9999999988854   346888999875431   1122211  111    24556778899999999853

>PLN02477 glutamate dehydrogenase

Probab=97.10  E-value=0.0029  Score=60.35  Aligned_cols=110  Identities=18%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHhC--------CCccCCCHHHH-hhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL--------GAKYQPSPDEV-AAS  126 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~  126 (358)
                      ++.+++|.|.|+|++|+.+|+.|.+.|.+|+ +.|.+          .+.+....+.        +.... +.+++ ..+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~  281 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP  281 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence            5778999999999999999999999999988 56665          2222111111        11112 22333 347


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |||++-|.     +.+.+  +++..+.+ +-++|+.-++++. +. +..+.|.++|+.++.
T Consensus       282 ~DvliP~A-----l~~~I--~~~na~~i-~ak~I~egAN~p~-t~-ea~~~L~~rGI~~~P  332 (410)
T PLN02477        282 CDVLIPAA-----LGGVI--NKENAADV-KAKFIVEAANHPT-DP-EADEILRKKGVVVLP  332 (410)
T ss_pred             ccEEeecc-----ccccC--CHhHHHHc-CCcEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence            99988776     23344  33333333 3456666666665 33 466888899988874

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.0025  Score=57.70  Aligned_cols=77  Identities=30%  Similarity=0.431  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|||-+ .+|+.++..|...    +..|+++....              .++.+..++||+||.+++.+..  
T Consensus       154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~--  217 (293)
T PRK14185        154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF--  217 (293)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc--
Confidence            5788999999985 5699999999887    57888886432              3677889999999999986543  


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                        +  .   .+++++|+++||++..
T Consensus       218 --i--~---~~~vk~gavVIDvGin  235 (293)
T PRK14185        218 --V--K---ADMVKEGAVVIDVGTT  235 (293)
T ss_pred             --c--C---HHHcCCCCEEEEecCc
Confidence              3  1   2357899999999753

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.09  E-value=0.0015  Score=60.61  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=65.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC------C--CcEE-EEcCCccch-------hhH---HhCC-C--ccCC--CHHHHh-h
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA------G--CDVT-VWNRTKSKC-------DPL---ISLG-A--KYQP--SPDEVA-A  125 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~------g--~~V~-~~~~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~  125 (358)
                      |+|+|||+|++|+.+++.|.+.      |  .+|. ++|++....       +.+   .+.+ +  ....  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            4899999999999999999762      3  4433 456553211       111   1111 1  1112  455553 4


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh-HHHHHHHHHHhcCCeEe
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL  186 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~~~~~~  186 (358)
                      ++|+||-|+|....-....   .-+.+.++.|..||-.+-+... ...++.+..++++..+.
T Consensus        81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~  139 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR  139 (326)
T ss_pred             CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence            6899999997432111122   2234567889988866544332 34566666666666543

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.06  E-value=0.0028  Score=57.56  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.+++|.|||- ..+|+.++..|...    +..|+++...              +.++.+..++||+||.++..+.-  
T Consensus       158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~--  221 (297)
T PRK14168        158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNL--  221 (297)
T ss_pred             CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCc--
Confidence            678899999998 56799999999987    6789887543              13677889999999999976542  


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                        +  .   .+++++|+++||++..
T Consensus       222 --i--~---~~~ik~gavVIDvGin  239 (297)
T PRK14168        222 --V--K---PEWIKPGATVIDVGVN  239 (297)
T ss_pred             --c--C---HHHcCCCCEEEecCCC
Confidence              3  1   2357899999999743

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.06  E-value=0.0013  Score=60.58  Aligned_cols=65  Identities=26%  Similarity=0.317  Sum_probs=48.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCc-cCC---CHHHHhhcCCEE---EEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAK-YQP---SPDEVAASCDVT---FAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~-~~~---~~~~~~~~aDiv---i~~vp  135 (358)
                      ++|||||-|..|+.++......|++|++.|++++....- .+.-+. .++   .+.++++.||+|   +.++|
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~   74 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVP   74 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCC
Confidence            689999999999999999999999999999887653322 221111 122   466888899999   45665

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.04  E-value=0.00087  Score=56.65  Aligned_cols=62  Identities=27%  Similarity=0.393  Sum_probs=48.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeCC
Q 018303           73 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        73 IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |.|+|+ |.+|+.+++.|.+.|++|++..|++++.+.  ..++.       -.+++.++++++|+|+.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            678986 999999999999999999999999887664  22221       112345678899999999964

...

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.04  E-value=0.025  Score=48.98  Aligned_cols=69  Identities=19%  Similarity=0.166  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLG-AKY---QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~vp~  136 (358)
                      ++++++|.|||.|.+|..-++.|.+.|.+|++++++.. ....+.+.+ +.+   ... .+.+..+|+|+.++..
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD   79 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence            57788999999999999999999999999999988654 222333322 221   112 2345677777777743

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.03  E-value=0.0028  Score=59.26  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=66.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--------CCC--cEE-EEcCCccc-----h--hhHHh---C-C-C-cc-------CCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK--------AGC--DVT-VWNRTKSK-----C--DPLIS---L-G-A-KY-------QPS  119 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~--------~g~--~V~-~~~~~~~~-----~--~~~~~---~-g-~-~~-------~~~  119 (358)
                      .+|+|+|+|++|+.+++.+.+        .|.  +|. +.|++...     .  +.+.+   . + . .+       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999999876        564  333 34543211     1  11111   1 1 0 00       126


Q ss_pred             HHHHh--hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCeEec
Q 018303          120 PDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE  187 (358)
Q Consensus       120 ~~~~~--~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~  187 (358)
                      .++++  .++|+||-+++ +......+      ...+..|..+|-.+.+.. ...+++.+..+.++..+.-
T Consensus        83 ~~ell~~~~~DVvVd~t~-~~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~  146 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTN-DKNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF  146 (336)
T ss_pred             HHHHHhcCCCCEEEECCC-cHHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE
Confidence            77877  47999999995 44555554      345678888885554322 3455677776667766553

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.02  E-value=0.0023  Score=53.87  Aligned_cols=32  Identities=22%  Similarity=0.463  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +|+|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 499998875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.00  E-value=0.0044  Score=56.89  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=77.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH---hhhhc-
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC-  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~---~~~~~-  145 (358)
                      +++++|||--.=-..+++.|.+.|++|.++.-+.+.   ....|+...++.+++++++|+|+..+|.+..-   +..+. 
T Consensus         2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~   78 (296)
T PRK08306          2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN   78 (296)
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence            458999999999999999999999999987643221   12236777778889999999999998853221   11110 


Q ss_pred             ----ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          146 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       146 ----~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                          -+.+.++.|+++.+++ .+...+.    +.+.+.++++.+++.
T Consensus        79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~  120 (296)
T PRK08306         79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVEL  120 (296)
T ss_pred             cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEE
Confidence                0245678899998555 3555554    334566788877754

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.99  E-value=0.0019  Score=60.42  Aligned_cols=89  Identities=18%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcE---EEEcCCccchhhHHhCC--CccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V---~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++|+|+|+ |..|+.+.+.|.+.+|++   ....+..+..+.+.-.+  +...+...+.++++|+||+|+| ....+...
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g-~g~s~~~~   80 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAG-GSVSKKYA   80 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCC-hHHHHHHH
Confidence            58999987 999999999999987753   55544333222221111  2221111133478999999997 44555555


Q ss_pred             cccccccccCCCCCEEEEccCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                         +.+   ++.|..|||.|..
T Consensus        81 ---~~~---~~~G~~VIDlS~~   96 (334)
T PRK14874         81 ---PKA---AAAGAVVIDNSSA   96 (334)
T ss_pred             ---HHH---HhCCCEEEECCch
Confidence               333   3568899999864

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.96  E-value=0.0028  Score=58.79  Aligned_cols=66  Identities=12%  Similarity=0.132  Sum_probs=46.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDiv  130 (358)
                      +||+|||+ |++|..+|..+...|.       ++.++|++...  ++.    +.+.      .+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999999987664       68899985432  221    1111      122334555778999999


Q ss_pred             EEeeCC
Q 018303          131 FAMLAD  136 (358)
Q Consensus       131 i~~vp~  136 (358)
                      |++.-.
T Consensus        83 vitaG~   88 (322)
T cd01338          83 LLVGAK   88 (322)
T ss_pred             EEeCCC
Confidence            998743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=96.96  E-value=0.0046  Score=57.37  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCc--cchhhHH----hC------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPLI----SL------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~~~----~~------g~~~~~~~~~~~~~aDiv  130 (358)
                      .||+|||+ |.+|..+|..+...|.       ++.++|+++  ++++...    +.      +.....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987774       789999864  2222111    11      122223555778999999


Q ss_pred             EEeeCC
Q 018303          131 FAMLAD  136 (358)
Q Consensus       131 i~~vp~  136 (358)
                      |++.-.
T Consensus        84 VitAG~   89 (323)
T TIGR01759        84 LLVGAF   89 (323)
T ss_pred             EEeCCC
Confidence            998743

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.96  E-value=0.0039  Score=56.65  Aligned_cols=77  Identities=25%  Similarity=0.343  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|||-+ .+|+.++..|...    +..|+++....              .++.+..++||+||.++..+.   
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~---  216 (297)
T PRK14167        154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE---  216 (297)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence            5788999999985 5799999999876    78899875422              367788999999999997654   


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ++  .   .+++++|+++||++-.
T Consensus       217 -~i--~---~~~ik~gaiVIDvGin  235 (297)
T PRK14167        217 -LI--D---GSMLSEGATVIDVGIN  235 (297)
T ss_pred             -cc--C---HHHcCCCCEEEEcccc
Confidence             33  1   1357899999999743

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.96  E-value=0.01  Score=57.78  Aligned_cols=115  Identities=21%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccC--CCHHHHhhc-CCEEEEee--CCh-
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQ--PSPDEVAAS-CDVTFAML--ADP-  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~--~~~~~~~~~-aDivi~~v--p~~-  137 (358)
                      +.+++|.|+|.|.+|.+.|+.|++.|++|.++|++....    +.+.+.|+...  .+..+++.. +|+||...  |.+ 
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~   82 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN   82 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence            456789999999999999999999999999999865321    33444455432  234455554 89887765  222 


Q ss_pred             hhHhhhh------cccccccccCCCCC-EEEEccCCChhHHHHHHHHHHhcC
Q 018303          138 ESAMDVA------CGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATG  182 (358)
Q Consensus       138 ~~~~~~~------~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~  182 (358)
                      +......      .+..++...+.+.. +-|--+.|...+..-+...|...+
T Consensus        83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            2221111      11122322332333 333335666777777777777654

>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1

Probab=96.93  E-value=0.0045  Score=55.86  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhccccccccCCCCCCCchhh------
Q 018303          236 GAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPTAFPLKH------  305 (358)
Q Consensus       236 ~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~------  305 (358)
                      ++.+||+.|.+.++++++++|+..+++. .|.+.+++.+++.   .+...|++++.....+.+.+...+.-++.      
T Consensus         1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~   80 (291)
T PF00393_consen    1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG   80 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred             CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence            5789999999999999999999999985 7888887776666   45566777775444443333211111111      


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHH
Q 018303          306 QQKDLRLALGLAESVSQSTPIAAAAN  331 (358)
Q Consensus       306 ~~kd~~~~~~~a~~~gi~~p~~~a~~  331 (358)
                      -...-.+.++.|-++|+|+|++.++.
T Consensus        81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~  106 (291)
T PF00393_consen   81 QKGTGKWTVQEALELGVPAPTIAAAV  106 (291)
T ss_dssp             -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred             CCCccchHHHHHHHhCCCccHHHHHH
Confidence            12234778889999999999987664

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.93  E-value=0.0026  Score=59.54  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCc---EEEE--cCCccchhhHHhCCCccC-CCHHHHhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~---V~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ..++|+|+|+ |..|..+.+.|...+|+   +...  .|+..+.-.......... .+. +.++++|+||+|+|. ....
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~-~~s~   83 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGG-SISK   83 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCc-HHHH
Confidence            3468999987 99999999999987763   3222  233222111111111111 122 445789999999984 4555


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+.   +++   .+.|..|||.|..
T Consensus        84 ~~~---~~~---~~~g~~VIDlS~~  102 (344)
T PLN02383         84 KFG---PIA---VDKGAVVVDNSSA  102 (344)
T ss_pred             HHH---HHH---HhCCCEEEECCch
Confidence            555   322   3478999999854

>PLN00106 malate dehydrogenase

Probab=96.93  E-value=0.0071  Score=56.05  Aligned_cols=69  Identities=9%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchh--hHHhC----CCc---cCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivi~~vp  135 (358)
                      ....||+|||+ |++|..+|..|...+.  ++.++|+++...+  .+.+.    .+.   ..++..+.++++|+||++.-
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            34469999999 9999999999986654  7999998762221  11111    111   13345688999999999874


Q ss_pred             C
Q 018303          136 D  136 (358)
Q Consensus       136 ~  136 (358)
                      .
T Consensus        96 ~   96 (323)
T PLN00106         96 V   96 (323)
T ss_pred             C
Confidence            3

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.17  Score=45.99  Aligned_cols=265  Identities=15%  Similarity=0.198  Sum_probs=151.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC--------------------CC----ccCCCHHHHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------------------GA----KYQPSPDEVA  124 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~--------------------g~----~~~~~~~~~~  124 (358)
                      ..++.++|+|...-.+|.-+...| +.+-.++|-..+.+++.+.                    |-    .+..++.++.
T Consensus         4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~   83 (431)
T COG4408           4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV   83 (431)
T ss_pred             ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence            357999999999999999998876 6788888855444443220                    10    1245677888


Q ss_pred             hcCCEEEEeeCChhhHhhhhccccccc-ccCCCCCEEEEccCC--ChhHHHHHHHHHHhcCCeEecCC-------CCCCC
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAA-SGMGPGKGYVDVSTV--DGDTSKLINGHIKATGASFLEAP-------VSGSK  194 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~-~~l~~~~~vi~~s~~--~~~~~~~l~~~l~~~~~~~~~~~-------~~~~~  194 (358)
                      .+-+.+|+||| ..+...++   +++- +.++.=+.+|-+|..  +-.-...+...+. ..+.+++..       .+..+
T Consensus        84 ~dwqtlilav~-aDaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~  158 (431)
T COG4408          84 GDWQTLILAVP-ADAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAE  158 (431)
T ss_pred             chhheEEEEee-cHHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeeccc
Confidence            88999999997 55666666   3332 234433444444433  3222223333322 334444321       11111


Q ss_pred             CcCCC-----CceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH-------------------------
Q 018303          195 KPAED-----GQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-------------------------  242 (358)
Q Consensus       195 ~~~~~-----~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~-------------------------  242 (358)
                      +....     ..-+.+.+  ++....+.+.++++..|-.+..+..+-.++-..+.                         
T Consensus       159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~  238 (431)
T COG4408         159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQ  238 (431)
T ss_pred             CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCc
Confidence            11000     01112222  25666778899999888776665554333322211                         


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc--hhhhcc-------cc------------
Q 018303          243 -----------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA--PMYSLK-------GP------------  290 (358)
Q Consensus       243 -----------~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s--~~~~~~-------~~------------  290 (358)
                                 ...++.-+.....|.++++.+.|+++-.+.+.++...-.-  .++.+.       .+            
T Consensus       239 yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRY  318 (431)
T COG4408         239 YVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRY  318 (431)
T ss_pred             eeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHH
Confidence                       0234445667888999999999999988888887542110  011100       00            


Q ss_pred             -ccccCCCCC----C-------------------------CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          291 -SMIESLYPT----A-------------------------FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       291 -~~~~~~~~~----~-------------------------~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                       .++-+-|++    |                         -..+- ..-++.+.-++..+++++|.++-....++.|..+
T Consensus       319 talLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~ED-y~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~  397 (431)
T COG4408         319 TALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLED-YYKLATIQLLAGALDVVMPTADQLLTRYEQALKA  397 (431)
T ss_pred             HHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence             011111110    0                         01111 2226888999999999999999998888888764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.0065  Score=58.41  Aligned_cols=125  Identities=23%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccCC--CHHHHhhcCCEEEEeeCCh---hh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAMLADP---ES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~---~~  139 (358)
                      .+|+|.|+|+|.-|.+.++.|.+.|++|+++|.++...    ......++.+..  ...+...++|+||..=.-+   +.
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~   85 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL   85 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence            37899999999999999999999999999999766551    111223433221  1225567899999874222   21


Q ss_pred             Hhhhh------cccccccccCC-CCCEEEEc-cCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303          140 AMDVA------CGKHGAASGMG-PGKGYVDV-STVDGDTSKLINGHIKATGASFLEAPVSGS  193 (358)
Q Consensus       140 ~~~~~------~~~~~~~~~l~-~~~~vi~~-s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  193 (358)
                      ++...      .++-+++.... +..+|--+ ++|+..++.-+...++..|....-+...|.
T Consensus        86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~  147 (448)
T COG0771          86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT  147 (448)
T ss_pred             HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence            22111      01223333331 23333333 567777777777888877765544444333

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.91  E-value=0.0044  Score=56.34  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHH----CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|||-+ .+|+.++..|.+    .+..|+.+..+.              .++.+.+++||+||.+++.+    
T Consensus       156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~----  217 (295)
T PRK14174        156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA----  217 (295)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence            5788999999985 569999999987    578888877542              25778899999999999754    


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +++  ..+   .+++|+++||++-.
T Consensus       218 ~li--~~~---~vk~GavVIDVgi~  237 (295)
T PRK14174        218 RFI--TAD---MVKPGAVVIDVGIN  237 (295)
T ss_pred             Ccc--CHH---HcCCCCEEEEeecc
Confidence            344  233   35999999999743

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.89  E-value=0.011  Score=58.03  Aligned_cols=68  Identities=25%  Similarity=0.354  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCccCC--CHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivi~~v  134 (358)
                      .+.+++|.|+|+|..|.++++.|...|++|.++|++......+ .+.|+....  ...+.+.++|+||..-
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp   82 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP   82 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence            4556789999999999999999999999999999875543332 334655432  2234467889888763

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.88  E-value=0.0022  Score=59.56  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++...+...++..       ..++.++++++|+|+.+++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            5899998 599999999999999999999999875544333333321       2245667889999988764

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.88  E-value=0.0044  Score=55.96  Aligned_cols=76  Identities=26%  Similarity=0.358  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHH----CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      +..++++.|||-+ .+|+.++..|..    .+..|+.+..+.              .++.+.+++||+||.+++.+.   
T Consensus       154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~---  216 (286)
T PRK14184        154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPR---  216 (286)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC---
Confidence            5788999999985 569999999998    678888887532              367888999999999996543   


Q ss_pred             hhhcccccccccCCCCCEEEEccC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                       ++  ..   +.+++|+++||++-
T Consensus       217 -li--~~---~~vk~GavVIDVGi  234 (286)
T PRK14184        217 -FV--TA---DMVKPGAVVVDVGI  234 (286)
T ss_pred             -cC--CH---HHcCCCCEEEEeee
Confidence             33  22   34689999999964

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.86  E-value=0.0051  Score=60.25  Aligned_cols=116  Identities=22%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccC-CCHHHHhhcCCEEEEeeCCh---hhHh
Q 018303           68 ELPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ-PSPDEVAASCDVTFAMLADP---ESAM  141 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~---~~~~  141 (358)
                      ..+++|.|||+|..|.+ +|+.|.+.|++|.++|.+... .+.+.+.|+... ....+.+.++|+||+.---+   +..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            44578999999999999 899999999999999976432 233555566543 22234566899888764222   2222


Q ss_pred             hhh------cccccccccC-CCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303          142 DVA------CGKHGAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~------~~~~~~~~~l-~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ...      .+..+++..+ ++..+| |--+.|...+..-+...|+..|.
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            211      1223343333 222333 33356777777777788877663

>PRK05442 malate dehydrogenase; Provisional

Probab=96.83  E-value=0.0047  Score=57.34  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=45.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDiv  130 (358)
                      +||+|||+ |.+|..+|..+...|.       ++.++|+++..  ++.    +.+.      ......+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            58999998 9999999999876553       68899985432  211    1111      123334555778999999


Q ss_pred             EEeeC
Q 018303          131 FAMLA  135 (358)
Q Consensus       131 i~~vp  135 (358)
                      |++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            99874

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.78  E-value=0.0049  Score=56.79  Aligned_cols=95  Identities=15%  Similarity=0.142  Sum_probs=58.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchh--hHHhC----CCccC---CCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKYQ---PSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~~---~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |||+|||+ |++|..+|..+...|.  ++.++|++....+  .+.+.    .+...   +++.+.+++||+||++...+.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            58999999 9999999999988774  7889998711111  12221    11111   233577899999999875421


Q ss_pred             ---hHhh-hhccc--------ccccccCCCCCEEEEccCC
Q 018303          139 ---SAMD-VACGK--------HGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       139 ---~~~~-~~~~~--------~~~~~~l~~~~~vi~~s~~  166 (358)
                         .++. ++..|        +.+.+ ..|++++|+.++-
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNP  119 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNP  119 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCc
Confidence               1111 11011        22322 3578899988663

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.78  E-value=0.0044  Score=53.97  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~  102 (358)
                      .+...+|.|||+|.+|+.++..|+..|.. +.++|.+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45667999999999999999999999974 8889886

>PRK15076 alpha-galactosidase; Provisional

Probab=96.77  E-value=0.0016  Score=62.85  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=47.4

Q ss_pred             CeEEEEcCChhHHHHHH--HHH----HCCCcEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~--~l~----~~g~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~  132 (358)
                      +||+|||+|++|...+.  .+.    -.+.+|.++|+++++.+....        .+    +..++|..+++++||+|++
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999966544  332    135689999999877653211        11    3446677899999999999


Q ss_pred             eeCC
Q 018303          133 MLAD  136 (358)
Q Consensus       133 ~vp~  136 (358)
                      ++..
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            9854

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.77  E-value=0.018  Score=52.70  Aligned_cols=41  Identities=27%  Similarity=0.489  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CCCcEEE-EcCCccchhhH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AGCDVTV-WNRTKSKCDPL  109 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~~~~  109 (358)
                      +.-|||+||+|.||+.+....+. .|++|.. .||+.+...+.
T Consensus        16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A   58 (438)
T COG4091          16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA   58 (438)
T ss_pred             CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH
Confidence            34589999999999999988875 6888764 67887765544

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.77  E-value=0.0059  Score=56.35  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=57.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhh--HHhC----CCcc-C-C-CHHHHhhcCCEEEEeeCChh-
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP--LISL----GAKY-Q-P-SPDEVAASCDVTFAMLADPE-  138 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~----g~~~-~-~-~~~~~~~~aDivi~~vp~~~-  138 (358)
                      ||+|||+ |++|..+|..+...+.  ++.++|+++...+.  +.+.    .+.. . + ++.+.+++||+||++...+. 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5999999 9999999999987764  78899987622111  1111    1111 1 1 23578899999999885321 


Q ss_pred             --hHh-hhhccc--------ccccccCCCCCEEEEccCC
Q 018303          139 --SAM-DVACGK--------HGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       139 --~~~-~~~~~~--------~~~~~~l~~~~~vi~~s~~  166 (358)
                        ..+ +++..+        +++.+ ..|++++|++++-
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCc
Confidence              111 111001        23322 3588888888663

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.76  E-value=0.01  Score=52.48  Aligned_cols=112  Identities=21%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEE-EEcCCccch-----hhH---HhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVT-VWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~-~~~~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      +++|+|.|+ |+||+.+.+.+.... +++. .+++.++..     ..+   ...++...+++.....++|++|=-+ .|.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE   80 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence            468999999 999999999998754 5544 567765422     111   1235566667777888999999888 466


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      .+...+   +-.   ++.+..+|--++| +....+.+.+..+.  +..+-+|.
T Consensus        81 ~~~~~l---~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N  125 (266)
T COG0289          81 ATLENL---EFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN  125 (266)
T ss_pred             hhHHHH---HHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEecc
Confidence            666666   222   2334434434444 44444455555443  44444443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.73  E-value=0.0095  Score=55.40  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-------CcEEEEcCCccc--hhh----HHh------CCCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g-------~~V~~~~~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDiv  130 (358)
                      .+|+|+|+ |.+|+.++..|...+       .+|.++|+++..  .+.    +.+      ..+....++.+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            47999999 999999999998744       489999986532  221    111      0122235666888999999


Q ss_pred             EEeeCC
Q 018303          131 FAMLAD  136 (358)
Q Consensus       131 i~~vp~  136 (358)
                      |++.-.
T Consensus        83 I~tAG~   88 (325)
T cd01336          83 ILVGAM   88 (325)
T ss_pred             EEeCCc
Confidence            998743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.71  E-value=0.0034  Score=57.86  Aligned_cols=64  Identities=13%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ||+|||+|.+|..+|..+...+.  ++.++|++.++++..    .+.       ......+..+.+++||+||++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            59999999999999999987774  689999987654322    110       11122223466899999999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.68  E-value=0.0068  Score=58.32  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC-------CC--cEEEEcCCccchhhHH----h------CCCccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~-------g~--~V~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDi  129 (358)
                      ..+|+|||+ |++|..+|..+...       |.  ++..+|++.++++...    +      ..+....+..+.+++||+
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi  179 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW  179 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence            468999999 99999999999876       54  6888999887765322    1      022323345577899999


Q ss_pred             EEEeeCC
Q 018303          130 TFAMLAD  136 (358)
Q Consensus       130 vi~~vp~  136 (358)
                      ||++...
T Consensus       180 VVitAG~  186 (444)
T PLN00112        180 ALLIGAK  186 (444)
T ss_pred             EEECCCC
Confidence            9998754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.68  E-value=0.0035  Score=55.31  Aligned_cols=64  Identities=28%  Similarity=0.345  Sum_probs=49.3

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018303           73 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        73 IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp~  136 (358)
                      |.|+|+ |.+|+.+++.|.+.+++|.+..|++.+  .+.+.+.|+..       .+++.++++.+|.|++++|.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            679986 999999999999999999999998643  34455555432       22455678899999999973

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.0054  Score=59.85  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc-cch----hhHHhCCCcc--CCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKC----DPLISLGAKY--QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~~----~~~~~~g~~~--~~~~~~~~~~aDivi~~vp  135 (358)
                      +.+++|.|+|.|.+|..+|+.|++.|++|+++|++. +..    +.+...|+..  .+..++....+|+||.+.-
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            456899999999999999999999999999999975 222    2222334332  2233455678999999874

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.66  E-value=0.0077  Score=55.30  Aligned_cols=100  Identities=16%  Similarity=0.298  Sum_probs=60.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-----CC---cc-CCCHHHH-hhcCCEEEEeeCCh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivi~~vp~~  137 (358)
                      ++||+|+|+ |.-|..+.+.|...- .++..+..+..+-+.+.+.     |.   .. ..+.+++ .++||+||+|+|..
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg   81 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG   81 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence            468999987 999999999998753 5666555433222323221     11   11 1133343 45599999999854


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHH
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING  176 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~  176 (358)
                       ....++   .++   +.+|..|||+|...-.....+.+
T Consensus        82 -~s~~~v---~~l---~~~g~~VIDLSadfR~~d~~~ye  113 (349)
T COG0002          82 -VSAELV---PEL---LEAGCKVIDLSADFRLKDPEVYE  113 (349)
T ss_pred             -hHHHHH---HHH---HhCCCeEEECCcccccCCHHHHH
Confidence             444444   333   34566699999876554334433

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.65  E-value=0.033  Score=48.24  Aligned_cols=71  Identities=28%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc-cchhhHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCChh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISLG-AKY---QPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      ++++++|.|||.|..|..=++.|.+.|.+|+++..+. +....+.+.+ +..   .-+.++ +..+++|+.+++++.
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~   84 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE   84 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence            6788999999999999999999999999999998866 3333333332 211   123334 345999999996543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.64  E-value=0.0069  Score=56.63  Aligned_cols=37  Identities=30%  Similarity=0.450  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+...+|.|||+|.+|+.+|..|+..|. ++.++|.+.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            3556799999999999999999999998 899999864

>cd00704 MDH Malate dehydrogenase

Probab=96.63  E-value=0.0067  Score=56.32  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCc--cchhhH----HhC------CCccCCCHHHHhhcCCEEE
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivi  131 (358)
                      ||+|||+ |++|..++..|...|.       ++.++|+++  +..+..    .+.      +.....+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999999987552       488999976  433211    111      1222245678899999999


Q ss_pred             EeeC
Q 018303          132 AMLA  135 (358)
Q Consensus       132 ~~vp  135 (358)
                      ++.-
T Consensus        82 itAG   85 (323)
T cd00704          82 LVGA   85 (323)
T ss_pred             EeCC
Confidence            9874

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.62  E-value=0.0051  Score=54.22  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+...+|.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            3556799999999999999999999996 688888754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.62  E-value=0.0077  Score=58.78  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--CCcc----CCCHHHH----hhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY----QPSPDEV----AASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~----~~~~~~~----~~~aDivi~~vp~~  137 (358)
                      ...++|.|+|+|.+|..+++.|.+.|++|++++++++..+.+.+.  +...    ..+.+.+    ++++|.|+++++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            346789999999999999999999999999999999887776553  2221    1222222    35789998888643

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.61  E-value=0.006  Score=56.88  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEE---EEcCCccchh-hHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVT---VWNRTKSKCD-PLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~---~~~~~~~~~~-~~~~~g--~~~~-~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ++|+|+|+ |.+|..+.+.|.+.+|++.   .. .+.++.. .+...+  ..+. .+..+ ++++|++++++| ......
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s~~   81 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVSRS   81 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHHHH
Confidence            68999997 9999999999997666432   22 2222211 111111  1111 12233 478999999998 344444


Q ss_pred             hhcccccccccCCCCCEEEEccCCC
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ++   +.+   .+.|..+||.|...
T Consensus        82 ~v---~~~---~~~G~~VIDlS~~f  100 (336)
T PRK05671         82 FA---EKA---RAAGCSVIDLSGAL  100 (336)
T ss_pred             HH---HHH---HHCCCeEEECchhh
Confidence            54   333   34688999998543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.61  E-value=0.012  Score=53.56  Aligned_cols=46  Identities=24%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+.+.|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga  166 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA  166 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence            467899999999999999999999987 8888888877766666554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.60  E-value=0.007  Score=58.11  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE--------EcCC---ccchhhHHh---C-------------CCccCCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCDPLIS---L-------------GAKYQPS  119 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~--------~~~~---~~~~~~~~~---~-------------g~~~~~~  119 (358)
                      ++.++||.|-|+|++|...|+.|.+.|.+|++        ||.+   .++++.+.+   .             +.... +
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~  303 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A  303 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence            57789999999999999999999999999988        6743   222211111   0             22222 2


Q ss_pred             HHHHh-hcCCEEEEeeCChhhHhhhhcccccccccCC--CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          120 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       120 ~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~--~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .++++ .+|||++-|.     +++.+  +.+..+.+.  .-++|+.-+++ |.+. +-.+.|.++|+.++.
T Consensus       304 ~~~~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP  365 (445)
T PRK14030        304 GKKPWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP  365 (445)
T ss_pred             CccceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence            23333 3588887666     44444  333333332  23456666666 5555 455778888887764

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.59  E-value=0.0061  Score=52.44  Aligned_cols=117  Identities=18%  Similarity=0.185  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|+|+|.+|..+++.|+..|. ++.++|.+.-....+..+        |-..+....+.++  +.|+-+.+.+
T Consensus        18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            3556799999999999999999999997 588898764322222111        1111111111111  2555555443


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      ...  ....   .++   ++.-.++|++. ........+.+.+.+.++.++.+.+.+
T Consensus        98 ~~~--~~~~---~~~---~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G  145 (197)
T cd01492          98 DDI--SEKP---EEF---FSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG  145 (197)
T ss_pred             cCc--cccH---HHH---HhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            211  1111   222   22335666653 345555667788888888777766544

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.58  E-value=0.0031  Score=52.53  Aligned_cols=67  Identities=10%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             CCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~  136 (358)
                      .-++.|||+|++|++++..=  ...|+++. ++|.+++........ .+.-.+++++.++  +.|+.++|||.
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            34799999999999999873  35778765 689988765432221 1223445666666  68899999984

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.56  E-value=0.0025  Score=60.31  Aligned_cols=36  Identities=28%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      .+...+|.|||+|.+|..++..|+..|. ++.++|.+
T Consensus        38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3556799999999999999999999996 78888876

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.55  E-value=0.022  Score=55.67  Aligned_cols=113  Identities=10%  Similarity=0.027  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcC----------ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----------------------CC
Q 018303           67 DELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GA  114 (358)
Q Consensus        67 ~~~~~~IgIIG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----------------------g~  114 (358)
                      .+.+++|+|+|+          ..-...+++.|.+.|.+|.+||+.-...+.-...                      ++
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            367789999998          4578899999999999999999864332110011                      13


Q ss_pred             ccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          115 KYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       115 ~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      ....+..++++++|+|+++++.+ +.+.+-  -+.+...|++..+|+|.-+.-.  .    +.+++.|..|...
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~--~~~~~~~m~~~~~viD~rn~l~--~----~~~~~~G~~y~~~  465 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKTLD--YQKIYDNMQKPAFVFDGRNVLD--H----EKLREIGFIVYSI  465 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-HhcccC--HHHHHHhccCCCEEEECCCCCC--H----HHHHhCCcEEEEe
Confidence            44556678999999999999644 444331  0444455666668999765542  2    2223446666553

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.53  E-value=0.0065  Score=48.80  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~~~~  139 (358)
                      ++|.|+|+|.+|+.+++.|+..|. ++.++|.+.=....+..+        |...+.-..+.+.  ..++=+.+.|... 
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~-   81 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI-   81 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc-
Confidence            589999999999999999999997 688898754322221111        2111111222222  1233344443222 


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  191 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  191 (358)
                      ....+   .+++   +.-.++|++.. .......+.+.+.+.++.++.+...
T Consensus        82 ~~~~~---~~~~---~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~~  126 (135)
T PF00899_consen   82 DEENI---EELL---KDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGVN  126 (135)
T ss_dssp             SHHHH---HHHH---HTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred             ccccc---cccc---cCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEee
Confidence            12222   2222   23356666543 3555567777888888877766543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.017  Score=56.39  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHh--CCCccCC--CHHHHhhcCCEEEEee--CC-hhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivi~~v--p~-~~~~  140 (358)
                      +-.|.|||.|..|.++|+.|.+.|++|.++|.....  .+.+.+  .|+....  ...+.+.++|+||+.-  |. .+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            458999999999999999999999999999975432  223443  2554421  1234567899887754  21 2222


Q ss_pred             hhhh------cccccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCCeE
Q 018303          141 MDVA------CGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       141 ~~~~------~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ...-      .+..+++..+.+..+| |--+.|+..+..-+...|...|..+
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~  137 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV  137 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence            2111      0112333332233333 3335566777777777787765433

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.015  Score=54.81  Aligned_cols=110  Identities=18%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc------------------chhhHHhC-CCccCCCHHHHh-hc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLISL-GAKYQPSPDEVA-AS  126 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~------------------~~~~~~~~-g~~~~~~~~~~~-~~  126 (358)
                      +++++||.|=|.|++|+..|+.+...|.+|++++-+..                  +...+.+. +...... ++++ -+
T Consensus       204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~  282 (411)
T COG0334         204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD  282 (411)
T ss_pred             CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence            37889999999999999999999999999988766554                  22222221 3344433 4444 36


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |||++=|.     +++.+  +.+-.+.++.. +|+.-++++.. .+ ..+.+.++|+.|+.
T Consensus       283 cDIl~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P~t-~e-A~~i~~erGIl~~P  333 (411)
T COG0334         283 CDILIPCA-----LENVI--TEDNADQLKAK-IVVEGANGPTT-PE-ADEILLERGILVVP  333 (411)
T ss_pred             CcEEcccc-----ccccc--chhhHHHhhhc-EEEeccCCCCC-HH-HHHHHHHCCCEEcC
Confidence            89876554     55555  34444555544 56655555443 33 34444577876653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.49  E-value=0.015  Score=54.52  Aligned_cols=47  Identities=15%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  115 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~  115 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~  216 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD  216 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence            46799999999999999999999998 588899988887766666643

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.47  E-value=0.0095  Score=54.73  Aligned_cols=62  Identities=18%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             EEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----h------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           75 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        75 IIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|++|..+|..+...+.  ++.++|++.++++...    +      .......+..+.+++||+||++.-.
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~   74 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA   74 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence            69999999999999987774  6999999876544322    1      1122333445678999999998753

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.47  E-value=0.013  Score=55.12  Aligned_cols=89  Identities=29%  Similarity=0.353  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcC---CccchhhHHhCCCccCCCH----HH--HhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPSP----DE--VAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~---~~~~~~~~~~~g~~~~~~~----~~--~~~~aDivi~~vp~~~~  139 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++   ++++.+.+.+.|+......    .+  .....|+|+-++..+..
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  251 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL  251 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence            457899999999999999999999999999988   4556555555555432111    11  11235777777743222


Q ss_pred             HhhhhcccccccccCCCCCEEEEcc
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      +..       .+..++++..++.++
T Consensus       252 ~~~-------~~~~l~~~G~~v~~G  269 (355)
T cd08230         252 AFE-------ALPALAPNGVVILFG  269 (355)
T ss_pred             HHH-------HHHHccCCcEEEEEe
Confidence            222       234556666555544

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.47  E-value=0.011  Score=56.81  Aligned_cols=112  Identities=16%  Similarity=0.093  Sum_probs=66.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-Ec----------CCccchh---hHHh------------CCCccCCCH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WN----------RTKSKCD---PLIS------------LGAKYQPSP  120 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~----------~~~~~~~---~~~~------------~g~~~~~~~  120 (358)
                      ++.++||.|.|+|++|...|+.|.+.|.+|++ .|          .+.++..   .+..            .+.... +.
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~  303 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EG  303 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CC
Confidence            67889999999999999999999999999887 55          2221111   0000            022222 33


Q ss_pred             HHHh-hcCCEEEEeeCChhhHhhhhcccccccccCC-CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          121 DEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       121 ~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~-~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ++++ .+|||++=|.     +++.+  +.+..+.++ ++..+|..+...|.+.+ -.+.+.++++.++.
T Consensus       304 d~~~~~~cDIliPaA-----l~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P  364 (444)
T PRK14031        304 ARPWGEKGDIALPSA-----TQNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP  364 (444)
T ss_pred             cccccCCCcEEeecc-----ccccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence            3432 4588887766     33444  333334443 34444444444466654 44567777877763

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.44  E-value=0.012  Score=52.55  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+        |-..+....+.+.  +.++-+.+.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            3566799999999999999999999996 688888764332222211        1111111112121  2344444443


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      ..- ...-+   .   ..++.-.+||+++- .+.....+.+.+...++.++.+.+
T Consensus       109 ~~i-~~~~~---~---~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~  155 (245)
T PRK05690        109 ARL-DDDEL---A---ALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA  155 (245)
T ss_pred             ccC-CHHHH---H---HHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence            211 11111   1   12334457776643 444455566777777777776544

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.42  E-value=0.0063  Score=56.33  Aligned_cols=69  Identities=12%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchh--hHHhC----CCccCCC---HHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQPS---PDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~--~~~~~----g~~~~~~---~~~~~~~aDivi~~vp  135 (358)
                      ..++||+|||+ |++|+.++..++..+  .++.++|++....+  .+.+.    .+...++   ..+.++++|+||++.-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            44569999999 999999999998554  57999998432221  11111    1111212   2578899999999874


Q ss_pred             C
Q 018303          136 D  136 (358)
Q Consensus       136 ~  136 (358)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            3

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.42  E-value=0.01  Score=53.89  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=26.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      +|.|||+|.+|..+|+.|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999996 57777653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08328 hypothetical protein; Provisional

Probab=96.38  E-value=0.026  Score=49.83  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCC-----HHHH----hh--cCCEEEEee
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPS-----PDEV----AA--SCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~-----~~~~----~~--~aDivi~~v  134 (358)
                      .+...+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+-.....+     -.++    ++  +.|+.+.+.
T Consensus        24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~  103 (231)
T PRK08328         24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF  103 (231)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence            3556799999999999999999999996 6888887654433332211100000     1111    11  467777665


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      +..- .+.-+   .+   .++.-.+||++.-. ......+.+.+...++.++.+.+.+
T Consensus       104 ~~~~-~~~~~---~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g  153 (231)
T PRK08328        104 VGRL-SEENI---DE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG  153 (231)
T ss_pred             eccC-CHHHH---HH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence            4221 11112   12   23455678877443 4445556667777788887765543

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.37  E-value=0.0099  Score=55.21  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEEE
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDivi  131 (358)
                      +|+|||+ |++|..++..+...+.       ++.++|++++.  .+.    +.+.      .+....+..+.+++||+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999987553       58899986542  211    1110      1222225467889999999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      ++.-.
T Consensus        81 itAG~   85 (324)
T TIGR01758        81 LVGAF   85 (324)
T ss_pred             EcCCC
Confidence            98743

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.35  E-value=0.013  Score=53.94  Aligned_cols=79  Identities=23%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      .+|+|||+ |..|..+.+.|.... .++.....+..+ .      .   .+.++.++++|++|+|+|.. ....+.   +
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~-~s~~~~---~   68 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDD-AAREAV---A   68 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHH-HHHHHH---H
Confidence            58999995 999999999998865 344433332221 1      1   23345667899999999844 444444   3


Q ss_pred             cccccCCCCCEEEEccCC
Q 018303          149 GAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~  166 (358)
                      ++   .+.|..|||.|..
T Consensus        69 ~~---~~~g~~VIDlSad   83 (313)
T PRK11863         69 LI---DNPATRVIDASTA   83 (313)
T ss_pred             HH---HhCCCEEEECChh
Confidence            33   2468899999854

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.34  E-value=0.016  Score=53.31  Aligned_cols=121  Identities=23%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--------CCcEE---EEcCCccchhhHHhCC-CccCCCH-----HHHhh--cCCEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVTF  131 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--------g~~V~---~~~~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDivi  131 (358)
                      .+|+|+|+|.+|+.+++.+.+.        |.++.   +.+|+........-.+ ..+..+.     .+++.  +.|+|+
T Consensus         4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv   83 (333)
T COG0460           4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV   83 (333)
T ss_pred             EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence            5899999999999999999864        34433   3455443322111011 1222333     34443  467999


Q ss_pred             EeeCC-hhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCe-EecCCCCCCCC
Q 018303          132 AMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGAS-FLEAPVSGSKK  195 (358)
Q Consensus       132 ~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~~  195 (358)
                      .+++- ....+. .   ..+...++.|.+||-..-... ..-.++.+..++.+.. +..+.+.++.|
T Consensus        84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP  146 (333)
T COG0460          84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP  146 (333)
T ss_pred             ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence            99975 333443 3   445677889999984322211 2234577776666654 44455554443

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.34  E-value=0.006  Score=57.09  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=53.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCcE---EEEcCCccchhhHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           72 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~~g~~V---~~~~~~~~~~~~~~~~g--~~~~-~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      +|+||| .|.+|..+.+.|.+.+|++   .++.+..+..+.+...+  .... .+. +.++++|+|++|+| ........
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g-~~~s~~~a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAG-GSVSKEFA   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCC-HHHHHHHH
Confidence            589999 5999999999999988763   23333332222222112  1111 122 34578999999997 44555555


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         +.+   ++.|..|||.|.
T Consensus        79 ---~~~---~~~G~~VID~ss   93 (339)
T TIGR01296        79 ---PKA---AKCGAIVIDNTS   93 (339)
T ss_pred             ---HHH---HHCCCEEEECCH
Confidence               333   346888999875

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.32  E-value=0.018  Score=55.33  Aligned_cols=112  Identities=20%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHh---C-------------CCccCCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS---L-------------GAKYQPS  119 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~---~-------------g~~~~~~  119 (358)
                      ++.++||.|=|+|++|...|+.|.+.|.+|+ +.|.+          .+++..+.+   .             +.... +
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~  312 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-P  312 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-C
Confidence            5788999999999999999999999999988 66665          222211111   0             12222 1


Q ss_pred             HHHHh-hcCCEEEEeeCChhhHhhhhcccccccccC-CCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          120 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       120 ~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .++++ -+|||.+-|.     +.+.+  +.+-.+.+ +.++.+|--+...|.+. +-.+.+.++++.++.
T Consensus       313 ~~~~~~~~cDI~iPcA-----~~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P  374 (454)
T PTZ00079        313 GKKPWEVPCDIAFPCA-----TQNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP  374 (454)
T ss_pred             CcCcccCCccEEEecc-----ccccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence            22222 3688887665     34444  22222222 33444444444445555 455778888887764

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.32  E-value=0.015  Score=54.72  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=61.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh-CCCccCCCH-H--------HHh--hcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivi~~vp~~  137 (358)
                      .++.|+|+|.||...+..++..|. +|++.|+++++++..++ .+.....+. +        +.-  ..+|+++.|+...
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~  249 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP  249 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence            389999999999999888888884 67888999998887766 343322221 1        111  2489999999744


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ......       +..++++..++.++-.
T Consensus       250 ~~~~~a-------i~~~r~gG~v~~vGv~  271 (350)
T COG1063         250 PALDQA-------LEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHHH-------HHHhcCCCEEEEEecc
Confidence            333333       4567777777766544

>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1

Probab=96.31  E-value=0.035  Score=43.81  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCc
Q 018303          249 SMMATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQST  324 (358)
Q Consensus       249 ~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~  324 (358)
                      .+..++.|+..++++.|++  .+.+.+.+.......+   ...++|.. |+..|  .+++..   .+.++++++++|+++
T Consensus        39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~~~~SM~~-D~~~gr~tEid~i---~G~vv~~a~~~gv~~  111 (125)
T PF08546_consen   39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP---DNRSSMLQ-DIEAGRPTEIDYI---NGYVVRLAKKHGVPT  111 (125)
T ss_dssp             HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT---TT--HHHH-HHHTTB--SHHHT---HHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC---CccccHHH-HHHHcccccHHHH---HHHHHHHHHHHCCCC
Confidence            3566889999999999974  3334444432211100   01222322 22222  234444   789999999999999


Q ss_pred             hHHHHHHHHHHHH
Q 018303          325 PIAAAANELYKVA  337 (358)
Q Consensus       325 p~~~a~~~~~~~a  337 (358)
                      |.++.++++++..
T Consensus       112 P~~~~i~~lvk~~  124 (125)
T PF08546_consen  112 PVNETIYALVKAI  124 (125)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999988753

1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.31  E-value=0.017  Score=54.64  Aligned_cols=67  Identities=15%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC-c----EE--EE--cCCccchhhHH----h------CCCccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC-D----VT--VW--NRTKSKCDPLI----S------LGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~-~----V~--~~--~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDi  129 (358)
                      ..||+|||+ |++|..+|-.+...|. .    |.  ++  |++.++++...    +      ..+....+..+.+++||+
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI  123 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW  123 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence            358999999 9999999999987653 2    33  34  77776654321    1      122323445577899999


Q ss_pred             EEEeeCC
Q 018303          130 TFAMLAD  136 (358)
Q Consensus       130 vi~~vp~  136 (358)
                      ||++...
T Consensus       124 VVitAG~  130 (387)
T TIGR01757       124 ALLIGAK  130 (387)
T ss_pred             EEECCCC
Confidence            9998743

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.023  Score=55.95  Aligned_cols=116  Identities=22%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-----hhhHHhCCCccCCC-HHHHhhcCCEEEEeeCC---h
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQPS-PDEVAASCDVTFAMLAD---P  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~~~~g~~~~~~-~~~~~~~aDivi~~vp~---~  137 (358)
                      ...+++|.|||.|.+|..+|+.|...|++|.++|+++..     .+.+.+.|+..... ..+....+|+||++..-   .
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~   92 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA   92 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence            345679999999999999999999999999999965421     12344456554321 11234569999988632   2


Q ss_pred             hhHhhhh------ccccccc-ccCCCC----CEEEEccCCChhHHHHHHHHHHhcC
Q 018303          138 ESAMDVA------CGKHGAA-SGMGPG----KGYVDVSTVDGDTSKLINGHIKATG  182 (358)
Q Consensus       138 ~~~~~~~------~~~~~~~-~~l~~~----~~vi~~s~~~~~~~~~l~~~l~~~~  182 (358)
                      +.....-      .++.+++ ..+.+.    .+-|--+.|+..+..-+...|...+
T Consensus        93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            2211111      1112232 223221    2333335666667766777776643

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.30  E-value=0.018  Score=52.75  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ||+|+|. |..|..+.+.|.... +++.....+..         .. ..+.+++++++|++++|+|. .......   +.
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~-~~s~~~~---~~   68 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPD-DAAREAV---SL   68 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCH-HHHHHHH---HH
Confidence            7999987 999999999998763 34443322211         11 12456777899999999984 4445554   33


Q ss_pred             ccccCCCCCEEEEccCC
Q 018303          150 AASGMGPGKGYVDVSTV  166 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~  166 (358)
                      +   ...|..|||.|..
T Consensus        69 ~---~~~g~~VIDlSad   82 (310)
T TIGR01851        69 V---DNPNTCIIDASTA   82 (310)
T ss_pred             H---HhCCCEEEECChH
Confidence            3   3478899999853

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=96.30  E-value=0.015  Score=51.14  Aligned_cols=84  Identities=17%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             EEEEcCCccchhhHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC---ChhH
Q 018303           96 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDT  170 (358)
Q Consensus        96 V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~---~~~~  170 (358)
                      +.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|+|...+.+...       ..++.|+.++..+.+   ....
T Consensus         5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~   77 (229)
T TIGR03855         5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL   77 (229)
T ss_pred             EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence            4579999888777655 3677788999987 57999999998554444443       456778777766665   3455


Q ss_pred             HHHHHHHHHhcCCeEe
Q 018303          171 SKLINGHIKATGASFL  186 (358)
Q Consensus       171 ~~~l~~~l~~~~~~~~  186 (358)
                      .+++.+..++.|..+.
T Consensus        78 ~~~l~~aA~~~g~~l~   93 (229)
T TIGR03855        78 RERLREVARSSGRKVY   93 (229)
T ss_pred             HHHHHHHHHhcCCEEE
Confidence            7778888887766543

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.29  E-value=0.0066  Score=55.24  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=45.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHHh------hc-CCEEEEeeCC
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVA------AS-CDVTFAMLAD  136 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~------~~-aDivi~~vp~  136 (358)
                      +|.|+|+ |.+|+.+++.|.+.|++|.+..|++++.......    ...-.+++.+++      +. +|.|+++.|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            4778877 9999999999999999999999988654311000    111122444555      45 8999988764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.011  Score=58.61  Aligned_cols=66  Identities=18%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhC--CCccC--CCHHHHhhcCCEEEEe
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM  133 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivi~~  133 (358)
                      +.+++|.|+|.|..|.++|+.|.+.|++|.++|.....  .+.+...  |+...  ....+.+.++|+||..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            44578999999999999999999999999999975432  2234333  33321  1234556789999887

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.29  E-value=0.02  Score=51.05  Aligned_cols=91  Identities=11%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ..++-|+|.|.+++.+++.+...|++|+++|..++....             .....++.++...|     ...+     
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~-----~~~~-----  156 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP-----EAEV-----  156 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH-----HHHH-----
Confidence            368999999999999999999999999999976542110             00123332222221     1222     


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                        ..+.+++.+|-++++...|.+.+..++++....|
T Consensus       157 --~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~Y  190 (246)
T TIGR02964       157 --AEAPPGSYFLVLTHDHALDLELCHAALRRGDFAY  190 (246)
T ss_pred             --hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcE
Confidence              1234667777777877778877887774433333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.28  E-value=0.024  Score=55.03  Aligned_cols=112  Identities=22%  Similarity=0.213  Sum_probs=66.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhh----HH-hCCCccC--CCHHHHhhcCCEEEEeeCC---hhhH
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDP----LI-SLGAKYQ--PSPDEVAASCDVTFAMLAD---PESA  140 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~----~~-~~g~~~~--~~~~~~~~~aDivi~~vp~---~~~~  140 (358)
                      +|.|||.|..|.++|+.|.+.|++|.++|..+.. ...    +. ..|+...  .+ .+.+.++|+||..---   .+..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            4789999999999999999999999999975432 111    22 2355432  23 4456789988776522   2222


Q ss_pred             hhhh------cccccccccCCCCC-EEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          141 MDVA------CGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       141 ~~~~------~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      ...-      .+..+++..+.+.. +-|.-+.|...+..-+...|...+..
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~  130 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLK  130 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence            2111      11223332322323 33333566777777777778776544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.27  E-value=0.03  Score=49.69  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+        |-..+....+.+.  +.++-+.+.+
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            3556799999999999999999999995 688888764333222211        1111111112222  2455555553


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      ..-. ..-+   .   +.++.-.+||++. ..+.....+.+.+.+.++.++.+...+
T Consensus       101 ~~i~-~~~~---~---~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~~ip~v~~~~~g  149 (240)
T TIGR02355       101 AKLD-DAEL---A---ALIAEHDIVVDCT-DNVEVRNQLNRQCFAAKVPLVSGAAIR  149 (240)
T ss_pred             ccCC-HHHH---H---HHhhcCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            2111 1111   1   2234456777664 345555567777777788777655443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.039  Score=53.80  Aligned_cols=116  Identities=15%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHh--CCCccC--CCHHHHhhcCCEEEEeeCCh---h
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQ--PSPDEVAASCDVTFAMLADP---E  138 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~--~g~~~~--~~~~~~~~~aDivi~~vp~~---~  138 (358)
                      +.+++|.|+|.|.+|.+.|+.|.+.|++|.++|.++..  .+.+.+  .|+...  ...++...++|+||...--+   +
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            34579999999999999999999999999999976543  233333  254432  11234456899998875322   2


Q ss_pred             hHhhhh------ccccccccc-CC--CCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303          139 SAMDVA------CGKHGAASG-MG--PGKGYVDV-STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       139 ~~~~~~------~~~~~~~~~-l~--~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ..+...      .+..+++.. ++  +..+|--+ +.|+..+..-+...|...+.
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            332221      011223322 22  12333333 55666677777777776554

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.25  E-value=0.012  Score=56.06  Aligned_cols=118  Identities=20%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|+|+|.+|+.++..|+..|. ++.++|++.-....+..+        |...+....+.+.  +.++-+...+
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            4566899999999999999999999997 688898863222212111        1111111122221  1333333332


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      ..- ....+   .+   .++.-.+|||++-. ......+.+.+.+.++.++.+.+.+
T Consensus       212 ~~~-~~~~~---~~---~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g  260 (376)
T PRK08762        212 ERV-TSDNV---EA---LLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR  260 (376)
T ss_pred             ccC-ChHHH---HH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence            111 11111   11   12334577776443 3334456677777788777765543

>PRK06153 hypothetical protein; Provisional

Probab=96.25  E-value=0.012  Score=55.35  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      .+...+|+|||+|..|+.++..|++.|. ++.++|.+
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            4567899999999999999999999996 78888875

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.22  E-value=0.035  Score=45.88  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             CCeEEEEcC--ChhHHHHHHHHHHCCCcEEEEcCCccc--h--hhH-------HhCC--CccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +++|++||=  +++..+++..++.+|+++.++.+..-.  .  +.+       .+.|  +..+++++++++++|+|..-.
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~   81 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR   81 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence            468999993  899999999999999999988875521  1  111       1123  466789999999999998877


Q ss_pred             CCh---hhHhhhh-----cc-cccccccCCCCCEEEEcc
Q 018303          135 ADP---ESAMDVA-----CG-KHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       135 p~~---~~~~~~~-----~~-~~~~~~~l~~~~~vi~~s  164 (358)
                      --+   .+-..-+     |. +.++++..+++.+|.++.
T Consensus        82 ~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   82 WQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             cccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            431   1111100     11 355555666777777763

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.18  E-value=0.035  Score=54.18  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCc-cCCCHHHHhhcCCEEEEeeCC---hhhHhhhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAMLAD---PESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivi~~vp~---~~~~~~~~  144 (358)
                      +++|+|+|+|.-|.+.++.|.. |.+|+++|..+.....+.+. ... ......+.+.++|+||..-.-   .+.....-
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~   84 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAK   84 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHH
Confidence            4689999999999999999995 99999999654432222211 111 111223456789988776421   22222211


Q ss_pred             ------cccccccccCCCC-CEEEEc-cCCChhHHHHHHHHHHhcCCe
Q 018303          145 ------CGKHGAASGMGPG-KGYVDV-STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       145 ------~~~~~~~~~l~~~-~~vi~~-s~~~~~~~~~l~~~l~~~~~~  184 (358)
                            .++-+++....+. .+|--+ +.|+..+..-+...|...|..
T Consensus        85 ~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~  132 (454)
T PRK01368         85 NFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD  132 (454)
T ss_pred             HCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence                  1122332222222 333333 556677777777778775543

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.18  E-value=0.012  Score=55.84  Aligned_cols=63  Identities=22%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCCC-ccCCC---HHHHhhcCCEEEE
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~  132 (358)
                      +++|||||.|..|+.++..+.+.|++|+++|.+++... .+.+.-+ ....|   +.++++.||+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            36899999999999999999999999999998765422 2222111 11233   4567788998754

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.17  E-value=0.021  Score=51.13  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~  144 (358)
                      ...++++.|-|+ +.||..+|+.|++.|++|++..|+.++++.++++       +++.- -+++++-+=+..+.....+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~   75 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLE   75 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHH
Confidence            345668888898 9999999999999999999999999888776542       22211 12333333333445555555


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         .++.....+=.++||.+.
T Consensus        76 ---~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          76 ---DELKERGGPIDVLVNNAG   93 (265)
T ss_pred             ---HHHHhcCCcccEEEECCC
Confidence               444333233456777643

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.13  E-value=0.011  Score=53.57  Aligned_cols=64  Identities=23%  Similarity=0.300  Sum_probs=44.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      .+++|||+|+|.+|..=.+...++|++|++.|++..+.+.+.+          . + .+|..+...-++..++++.
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~----------~-L-GAd~fv~~~~d~d~~~~~~  244 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIK----------S-L-GADVFVDSTEDPDIMKAIM  244 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHH----------h-c-CcceeEEecCCHHHHHHHH
Confidence            6789999999999988888888899999999998644433222          0 1 3566666664444444443

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=96.08  E-value=0.014  Score=53.47  Aligned_cols=64  Identities=17%  Similarity=0.269  Sum_probs=44.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHH----hC------CCccCC-CHHHHhhcCCEEEEee
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----SL------GAKYQP-SPDEVAASCDVTFAML  134 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~----~~------g~~~~~-~~~~~~~~aDivi~~v  134 (358)
                      +||+|||+|++|+++|..|...+  -++.++|+..++.+-..    +.      ...... ...+.++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            48999999999999999996544  48999999855433211    10      112222 1245678999999998

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.06  E-value=0.014  Score=54.44  Aligned_cols=89  Identities=17%  Similarity=0.210  Sum_probs=55.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHH-CCCc---EEEEcCCccchhhH--HhCCCccC-CCHHHHhhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNRTKSKCDPL--ISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~-~g~~---V~~~~~~~~~~~~~--~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      .++|||||+ |..|+.+.+.|.. ..++   +..+......-+.+  ........ .+.++ ++++|++++|+| ....+
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~-~~~s~   82 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAG-GEVSR   82 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCC-hHHHH
Confidence            368999998 9999999999995 6666   44333221111111  11112211 13444 478999999997 44555


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+.   +.+   .+.|..+||.|..
T Consensus        83 ~~~---~~~---~~~G~~VID~Ss~  101 (347)
T PRK06728         83 QFV---NQA---VSSGAIVIDNTSE  101 (347)
T ss_pred             HHH---HHH---HHCCCEEEECchh
Confidence            555   332   3578999999753

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.03  Score=50.24  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      +++++++-|.|. |.||+.+++.|.+.|++|++.+|+.+..+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV   46 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            456678989976 9999999999999999999999987654443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.03  E-value=0.015  Score=54.15  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCC---cEEEEcCCccchhhH--HhCCCccCCCHHHH-hhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPL--ISLGAKYQPSPDEV-AASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~  141 (358)
                      ..++|+|||+ |..|..+.+.|....|   ++.........-+.+  ......+. ++++. +.++|++++|+|. ....
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~-~~s~   80 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGR-EASA   80 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCH-HHHH
Confidence            4569999998 9999999999998433   454443222211111  11112222 34443 2689999999974 4444


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+.   +++   .+.|..|||.|..
T Consensus        81 ~~~---~~~---~~~g~~VIDlS~~   99 (336)
T PRK08040         81 AYA---EEA---TNAGCLVIDSSGL   99 (336)
T ss_pred             HHH---HHH---HHCCCEEEECChH
Confidence            554   333   3468999999853

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.03  E-value=0.021  Score=50.79  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=46.4

Q ss_pred             cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCC
Q 018303           77 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD  136 (358)
Q Consensus        77 G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~  136 (358)
                      |.|-||+.+..+|.+.||+|++..|++.+.+......+...+.+++... .+|+||.-.-.
T Consensus         6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~   66 (297)
T COG1090           6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE   66 (297)
T ss_pred             cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence            7899999999999999999999999988766544333333445556655 69999987754

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=96.02  E-value=0.0067  Score=49.51  Aligned_cols=92  Identities=12%  Similarity=0.148  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ...+++|++||+  +. .+++.+...+.++.++|++++.....  .+.....+.++++++||+|++.-  +.-+.+-+  
T Consensus         8 ~~~~~~V~~VG~--f~-P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTG--sTlvN~Ti--   78 (147)
T PF04016_consen    8 IGPGDKVGMVGY--FQ-PLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITG--STLVNGTI--   78 (147)
T ss_dssp             TTTTSEEEEES----H-CCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEEC--HHCCTTTH--
T ss_pred             hcCCCEEEEEcC--cH-HHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEe--eeeecCCH--
Confidence            345679999996  11 26777877889999999998653321  11224457788999999999887  33333444  


Q ss_pred             cccccccCCCCCEEEEccCCCh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                       ++++...++++.++-.+...+
T Consensus        79 -~~iL~~~~~~~~vil~GpS~~   99 (147)
T PF04016_consen   79 -DDILELARNAREVILYGPSAP   99 (147)
T ss_dssp             -HHHHHHTTTSSEEEEESCCGG
T ss_pred             -HHHHHhCccCCeEEEEecCch
Confidence             555666666776666655444

; PDB: 3L5O_B 3NPG_A.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.98  E-value=0.017  Score=54.12  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CcEEEE-cCCccchhhHHhC-------CC-------ccCCCHHHHhhcCCEEEEe
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLISL-------GA-------KYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~-~~~~~~~~~~~~~-------g~-------~~~~~~~~~~~~aDivi~~  133 (358)
                      ++|+|+|+ |.+|+.+++.+.... +++... ++.....+.+.+.       +.       .+.....+...++|+|+++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            47999996 999999999998865 677655 4433221211110       00       1101112345789999999


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +|.. ....+.   +.+   ...|..+|+.|..
T Consensus        81 ~p~~-~s~~~~---~~~---~~~G~~VIDlsg~  106 (341)
T TIGR00978        81 LPSE-VAEEVE---PKL---AEAGKPVFSNASN  106 (341)
T ss_pred             CCHH-HHHHHH---HHH---HHCCCEEEECChh
Confidence            9844 334443   222   3467788887654

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.97  E-value=0.011  Score=59.05  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      +...+|.|+|+|.+|..+|+.|++.|. +++++|.+
T Consensus       336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            456799999999999999999999996 57777653

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK08223 hypothetical protein; Validated

Probab=95.93  E-value=0.05  Score=49.31  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+...+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3566799999999999999999999996 688888754

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=95.93  E-value=0.028  Score=49.61  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccchhhHHhC----------CCccCCCHHHHhhcCCEEEEeeCChh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      .+.|+|.|..+-.......+.-   .+|.+|+|+++.++.+++.          .+....++++++..+|||+.|++   
T Consensus       140 vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atl---  216 (333)
T KOG3007|consen  140 VLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATL---  216 (333)
T ss_pred             EEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccc---
Confidence            5788999999998888776543   4799999998877766541          23456788999999999999996   


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      .++.++|     ..+++||+++=-++.-.|..- +..+.+-+....|+|.
T Consensus       217 stePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDs  260 (333)
T KOG3007|consen  217 STEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDS  260 (333)
T ss_pred             cCCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEec
Confidence            4666774     357899987665566556543 3333343445567664

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.93  E-value=0.018  Score=57.14  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+++|.|.|. |.||+.+++.|.+.|++|.+++|+.++.+.+
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l  120 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL  120 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            4578888876 9999999999999999999999988765443

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.92  E-value=0.035  Score=49.22  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=29.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCC-----------CcEEEEcCCc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRTK  103 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g-----------~~V~~~~~~~  103 (358)
                      +..+|.|||+|.+|+.+++.|+..|           .+++++|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3468999999999999999999863           2788888753

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.90  E-value=0.028  Score=52.94  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCccchh-hHHh---C-----------CCcc-CCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivi~  132 (358)
                      ++|+|+| .|.+|+.+.+.|.... +++.++.++..... .+..   .           ...+ ..+.++ +.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence            6899998 7999999999998764 47777644432221 1110   0           0111 123444 478999999


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++|.. ....+.   +.+   ...|..+|+.+..
T Consensus        83 a~p~~-~s~~~~---~~~---~~~G~~vIDls~~  109 (349)
T PRK08664         83 ALPSD-VAGEVE---EEF---AKAGKPVFSNASA  109 (349)
T ss_pred             eCChh-HHHHHH---HHH---HHCCCEEEECCch
Confidence            99853 334443   222   2467778888754

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.88  E-value=0.068  Score=45.99  Aligned_cols=119  Identities=14%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC----------CCccCCCHHHHhh--cCCEEEEe
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAA--SCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~--~aDivi~~  133 (358)
                      .++..+|.|||+|.+|..+++.|...|. +++++|.+.-....+..+          |...+....+.++  +.|+-+..
T Consensus        16 ~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          16 KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            3455799999999999999999999996 588888763222212111          1111111111111  24555555


Q ss_pred             eCChhh-HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          134 LADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       134 vp~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      .+.... .....   .++   +++-.+||++ .........+.+.+.+.++.++.+...+
T Consensus        96 ~~~~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G  148 (198)
T cd01485          96 VEEDSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG  148 (198)
T ss_pred             EecccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            432211 01111   222   2334567766 4445555677788888888777765443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.86  E-value=0.017  Score=54.53  Aligned_cols=37  Identities=22%  Similarity=0.454  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      .+...+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3556799999999999999999999996 688888764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.86  E-value=0.21  Score=45.00  Aligned_cols=145  Identities=11%  Similarity=0.018  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|+|+|.+|+.+|..|+..| .+++++|.+.-....+..+        |-..+.-..+-+.  +.++-+...+
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            456679999999999999999999999 5788888764322222111        1000111112121  2344344443


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec-----CCH
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-----GDK  210 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~  210 (358)
                      ..- +..-+   .+++  ...-.+||++.- .+.....+.+.+.+.++.++...=.++.    ..+.-+-++     ...
T Consensus       107 ~~i-~~e~~---~~ll--~~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~k----~dp~~~~~~di~~t~~~  175 (268)
T PRK15116        107 DFI-TPDNV---AEYM--SAGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGGQ----IDPTQIQVVDLAKTIQD  175 (268)
T ss_pred             ccc-ChhhH---HHHh--cCCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCcccC----CCCCeEEEEeeecccCC
Confidence            211 11111   1111  112356776643 4444557888888888887765322221    111112222     134


Q ss_pred             hHHHHHHHHHHH
Q 018303          211 SLYNTVAPLLDI  222 (358)
Q Consensus       211 ~~~~~v~~ll~~  222 (358)
                      .....++..|+.
T Consensus       176 pla~~~R~~lr~  187 (268)
T PRK15116        176 PLAAKLRERLKS  187 (268)
T ss_pred             hHHHHHHHHHHH
Confidence            466778888876

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.85  E-value=0.042  Score=51.48  Aligned_cols=90  Identities=11%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      +.+++|||+|+-          .-...++.+|.+.|.+|.+||+-...-......++...+++.++++.||++++++ .-
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~t-ew  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINT-EW  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEec-cH
Confidence            677899999974          3467889999999999999998543221111114678889999999999999999 56


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEc
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      .+.+.+-   -+..  +.++.+|+|-
T Consensus       387 ~ef~~~d---~~~~--~m~~~~v~Dg  407 (414)
T COG1004         387 DEFRDLD---FEKL--LMKTPVVIDG  407 (414)
T ss_pred             HHHhccC---hhhh--hccCCEEEec
Confidence            6666654   2222  3355666653

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.037  Score=50.71  Aligned_cols=43  Identities=23%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.+++|-|.|. |.||..+++.|++.|++|++.+|+.+..+.+
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV   80 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            455678999976 9999999999999999999999987655443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.84  E-value=0.041  Score=56.18  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=33.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ..+++|.|||.|..|...|..|+..|++|+++++.+.
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            3578999999999999999999999999999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.82  E-value=0.03  Score=57.37  Aligned_cols=37  Identities=30%  Similarity=0.501  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ..+++|.|||.|..|...|..|+..|++|+++++.+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3568999999999999999999999999999998643

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.82  E-value=0.066  Score=52.07  Aligned_cols=112  Identities=16%  Similarity=0.093  Sum_probs=65.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccch--hhHHhCCCccC-C-CHHHHhhcCCEEEEeeCC---hhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAMLAD---PESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivi~~vp~---~~~~~  141 (358)
                      ++|.|||.|..|.+.++.|...  |++|.++|..+...  +.+.+ |+... . ...+.+.++|+||..---   .+...
T Consensus         8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~   86 (438)
T PRK04663          8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ   86 (438)
T ss_pred             ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence            5899999999999999999887  58899999754321  23432 55442 1 123445789988776522   22222


Q ss_pred             hhh------cccccccccCCCCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303          142 DVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ...      .+..+++..+.+..+|--+ +.|+..+..-+...|...+.
T Consensus        87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  135 (438)
T PRK04663         87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV  135 (438)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence            211      1112333322233333333 55667777777777776554

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.032  Score=49.44  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      .++++++-|.|. |.||..+++.|.+.|++|++.+|+++..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~   43 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA   43 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            355678999987 9999999999999999999999976543

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.035  Score=49.09  Aligned_cols=42  Identities=19%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||..+++.|.+.|++|.+.+|++++.+.
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE   46 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            345678999986 999999999999999999999988765443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.80  E-value=0.02  Score=41.27  Aligned_cols=35  Identities=29%  Similarity=0.493  Sum_probs=31.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      +|.|||.|.+|..+|..|+..|.+|+++.+++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58899999999999999999999999999876544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.79  E-value=0.025  Score=50.51  Aligned_cols=41  Identities=22%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ...+|+|.|+|+ |.+|+.+++.|...|++|++..|++++..
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   55 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK   55 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            345689999995 99999999999999999999988876543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.79  E-value=0.039  Score=51.44  Aligned_cols=90  Identities=20%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHH-HhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDE-VAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+.+.|+..+-+..+ .-+..|+++.+.....    .+   
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~----~~---  237 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG----LV---  237 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH----HH---
Confidence            457899999999999999888889999999999888887777777644322111 1124677777664332    23   


Q ss_pred             ccccccCCCCCEEEEccC
Q 018303          148 HGAASGMGPGKGYVDVST  165 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~  165 (358)
                      ...++.++++..++..+.
T Consensus       238 ~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       238 PPALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHHHhhCCCcEEEEEec
Confidence            334466777777776543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.79  E-value=0.064  Score=52.36  Aligned_cols=112  Identities=20%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             eEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCC-CHHHHhhcCCEEEEee--CC-hhhHhhhh-
Q 018303           72 RIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVA-  144 (358)
Q Consensus        72 ~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~v--p~-~~~~~~~~-  144 (358)
                      +|-|||.|..|.+ +|+.|++.|++|.++|.+.. ..+.+.+.|+.... ...+.++++|+||..-  |. .+...... 
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~   80 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE   80 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence            3789999999998 99999999999999997543 22335555665432 2234566799888764  21 22232221 


Q ss_pred             -----cccccccccC-CCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303          145 -----CGKHGAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       145 -----~~~~~~~~~l-~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                           .+..+++..+ ++..+| |--+.|+..+..-+...|...+.
T Consensus        81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~  126 (448)
T TIGR01082        81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL  126 (448)
T ss_pred             cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence                 1122333222 222333 33356777777777788877664

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.75  E-value=0.053  Score=49.86  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCc---EEEE--cCCccch-hhHHhCCCccCC--CHHHHhhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~---V~~~--~~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++|||+|+ |.+|+.+.+.|.+..+.   +.++  .|+..+. ..+.......-.  ......+++|+++.|.|. ...+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~-~~s~   80 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGG-SVSK   80 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCch-HHHH
Confidence            58999976 99999999999985543   2232  3332221 122221112111  112335589999999974 3445


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+.   +++   .+.|.++||.++.
T Consensus        81 ~~~---p~~---~~~G~~VIdnsSa   99 (334)
T COG0136          81 EVE---PKA---AEAGCVVIDNSSA   99 (334)
T ss_pred             HHH---HHH---HHcCCEEEeCCcc
Confidence            555   333   4578889988664

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.75  E-value=0.058  Score=48.04  Aligned_cols=92  Identities=26%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----CCHHHH-----hhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEV-----AASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~-----~~~aDivi~~vp~~  137 (358)
                      ..+.+|.|.|.|.+|..+++.++..|.+|++.++++++.+.+.+.+....     .+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            34578999999999999999999999999999998776665554432111     011111     13478888777532


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ......       +..++++..+++.+..
T Consensus       213 ~~~~~~-------~~~l~~~G~~v~~~~~  234 (271)
T cd05188         213 ETLAQA-------LRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HHHHHH-------HHhcccCCEEEEEccC
Confidence            232222       3456677777766544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.036  Score=51.77  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++.|.|+ |.||..+++.|++.|++|++.+|++++.+.+
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~   47 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV   47 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            455678989987 8999999999999999999999987665443

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.04  Score=49.05  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      ++.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL   46 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            345678888876 8999999999999999999999987655443

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.037  Score=49.28  Aligned_cols=43  Identities=23%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++-|.|. |.||..+++.|.+.|++|.+.+|+.++.+.+
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL   49 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            355678989987 8999999999999999999999987655443

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.70  E-value=0.043  Score=50.61  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+......  ..+..++.-...|+|+-++.........+   
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~---  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV---  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH---
Confidence            456899999999999999999999987 556777665544332211  11111111234688888875333333333   


Q ss_pred             ccccccCCCCCEEEEcc
Q 018303          148 HGAASGMGPGKGYVDVS  164 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s  164 (358)
                          +.++++..++.++
T Consensus       219 ----~~l~~~G~iv~~G  231 (308)
T TIGR01202       219 ----RRLAKGGEIVLAG  231 (308)
T ss_pred             ----HhhhcCcEEEEEe
Confidence                4566777666654

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.69  E-value=0.088  Score=51.17  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch--hhHHhCCCccCC--CHHHHhhcCCEEEEeeCCh---hhH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGAKYQP--SPDEVAASCDVTFAMLADP---ESA  140 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~---~~~  140 (358)
                      ..+++|.|||.|..|.+.++.|++.|++|.++|..+...  +.+. .|+....  ...+.++..|+||..-.-+   +..
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~   82 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSL   82 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence            345789999999999999999999999999999754321  2232 2544321  2234466788766554221   222


Q ss_pred             hhhh------cccccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303          141 MDVA------CGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       141 ~~~~------~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ....      ....+++..+.+..+| |--+.|...+..-+...|...+.
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~  132 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW  132 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            2111      0111233222222333 33356677777777777876543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.69  E-value=0.075  Score=52.00  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-h----hhHHhCCCccCC--CHH-----HHhhcCCEEEEeeCChh-
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQP--SPD-----EVAASCDVTFAMLADPE-  138 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~----~~~~~~g~~~~~--~~~-----~~~~~aDivi~~vp~~~-  138 (358)
                      +|.|||.|..|.+.|+.|...|++|.++|+.+.. .    +.+...|+....  ..+     +.+.+.|.|+....-++ 
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            6899999999999999999999999999986532 1    124444554421  111     35678998888543222 


Q ss_pred             --hHhhhh------ccccccc-ccCCCCCEEEEc-cCCChhHHHHHHHHHHhcC
Q 018303          139 --SAMDVA------CGKHGAA-SGMGPGKGYVDV-STVDGDTSKLINGHIKATG  182 (358)
Q Consensus       139 --~~~~~~------~~~~~~~-~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~  182 (358)
                        .....-      .+..+++ ..+.+..+|--+ +.|...+..-+...|...+
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence              221111      0111121 222233333333 5566666766677776654

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.67  E-value=0.048  Score=48.56  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=35.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+++++|.|.|. |.||+.+++.|.+.|++|++++|+++..+.
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~   50 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA   50 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence            466789999976 999999999999999999999998755443

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.66  E-value=0.044  Score=48.84  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      .+.+++|.|.|. |.+|..+++.|.+.|++|.+.+|++++.+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~   48 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA   48 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            356689999976 99999999999999999999999876543

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.66  E-value=0.071  Score=51.19  Aligned_cols=107  Identities=10%  Similarity=0.080  Sum_probs=63.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh--hcCCEEEEee--CCh-hhH---hh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAML--ADP-ESA---MD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivi~~v--p~~-~~~---~~  142 (358)
                      |+|.|+|+|.-|.++|+.|. .|.+|.++|..+.... ..+.|+... . ++..  +++|+||..-  |.+ +..   +.
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            57999999999999999999 9999999996543221 223355442 2 2333  4689877652  322 222   12


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG  182 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~  182 (358)
                      ++ +..+++..+.+..+-|--+.|+..+..-+...|...+
T Consensus        77 i~-~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g  115 (401)
T PRK03815         77 LI-SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG  115 (401)
T ss_pred             Hh-hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence            22 1122322222223334335667777777777777654

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.051  Score=48.83  Aligned_cols=41  Identities=27%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ++.+++|.|.|. |.||..+++.|.+.|++|++.+|+++..+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   47 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD   47 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            456779999977 89999999999999999999999866543

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.042  Score=48.43  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      ++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~   45 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA   45 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467888875 999999999999999999999998765443

>PRK07411 hypothetical protein; Validated

Probab=95.56  E-value=0.029  Score=53.55  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      .+...+|.|||+|.+|..++..|+..|. +++++|.+
T Consensus        35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3556799999999999999999999996 57778765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.55  E-value=0.065  Score=48.01  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+.          +-....++..-+......+.++  
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~--   71 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQR----------FGDHVLVVEGDVTSYADNQRAV--   71 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hCCcceEEEccCCCHHHHHHHH--
Confidence            45678888876 7899999999999999999999987665444321          0011223333333344555555  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       +++.+...+=.++||...
T Consensus        72 -~~~~~~~g~id~li~~ag   89 (263)
T PRK06200         72 -DQTVDAFGKLDCFVGNAG   89 (263)
T ss_pred             -HHHHHhcCCCCEEEECCC
Confidence             444443333456676654

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.54  E-value=0.05  Score=54.65  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCCC-ccCCC---HHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~~vp  135 (358)
                      ....++|||||.|..|+.++..+.+.|++|.++|.+++... .+.+.-+ ..+.|   +.++++++|+|.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            35668999999999999999999999999999998765321 1111111 11234   3455678999876543

>PLN02427 UDP-apiose/xylose synthase

Probab=95.54  E-value=0.034  Score=53.07  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhC-------CCc-------cCCCHHHHhhcCCEE
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAK-------YQPSPDEVAASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~-------g~~-------~~~~~~~~~~~aDiv  130 (358)
                      ..+.|+|.|.| +|-||+.+++.|.+. |++|.+.+|+..+...+...       ++.       -..++.++++++|+|
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V   90 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT   90 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence            45668999997 599999999999987 59999999876544332211       111       112345667789988


Q ss_pred             EEee
Q 018303          131 FAML  134 (358)
Q Consensus       131 i~~v  134 (358)
                      |-+.
T Consensus        91 iHlA   94 (386)
T PLN02427         91 INLA   94 (386)
T ss_pred             EEcc
Confidence            7665

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.54  E-value=0.05  Score=50.26  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHH---hC-----C-------CccCCCHHHHhhcCCEEEEe
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SL-----G-------AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~-----g-------~~~~~~~~~~~~~aDivi~~  133 (358)
                      +++|.|.| +|.||+.+++.|.+.|++|.+.+|+........   ..     .       +.-..+.+++++++|+||-+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   83 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT   83 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence            46899998 699999999999999999999888765422111   00     1       11122455677788888776


Q ss_pred             eC
Q 018303          134 LA  135 (358)
Q Consensus       134 vp  135 (358)
                      ..
T Consensus        84 A~   85 (322)
T PLN02662         84 AS   85 (322)
T ss_pred             CC
Confidence            63

>PRK08589 short chain dehydrogenase; Validated

Probab=95.53  E-value=0.06  Score=48.61  Aligned_cols=39  Identities=15%  Similarity=0.025  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      .+.++++-|.|. |.||..+++.|.+.|++|++.+|+ +..
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~   42 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV   42 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH
Confidence            355678888877 899999999999999999999997 443

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.044  Score=49.69  Aligned_cols=41  Identities=12%  Similarity=0.071  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ++.++++-|.| .|.||+.+++.|++.|++|++.+|+.+..+
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~   44 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR   44 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            45667888886 589999999999999999999999865544

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.53  E-value=0.072  Score=51.35  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcC----------ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .+.+++|+|+|+          ..-...+++.|.+.|.+|.+||+...... ...  .....++.++++++|.|+++++.
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence            357789999998          34678999999999999999998754322 111  22246888999999999999964


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEc
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      + +.+.+-+  +.+...|+ ..+++|.
T Consensus       387 ~-~~~~~~~--~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 D-EFKDLDL--EKIKDLMK-GKVVVDT  409 (411)
T ss_pred             H-HHhccCH--HHHHHhcC-CCEEEeC
Confidence            4 4443310  33333343 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.085  Score=48.34  Aligned_cols=86  Identities=15%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEE--EeeCChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF--AMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi--~~vp~~~~~~~~  143 (358)
                      .+.++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+.+.+.          +-...+++.  +-+.+..+++.+
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~----------l~~~~~~~~~~~Dv~d~~~v~~~   75 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE----------LGGDDRVLTVVADVTDLAAMQAA   75 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcCCCcEEEEEecCCCHHHHHHH
Confidence            566778999976 8999999999999999999999987655544321          101223333  223334455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++...+.+=.++||...
T Consensus        76 ~---~~~~~~~g~id~vI~nAG   94 (296)
T PRK05872         76 A---EEAVERFGGIDVVVANAG   94 (296)
T ss_pred             H---HHHHHHcCCCCEEEECCC
Confidence            5   444444434356666643

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.051  Score=47.77  Aligned_cols=85  Identities=9%  Similarity=0.043  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEE--eeCChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA--MLADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~--~vp~~~~~~~~~  144 (358)
                      +.++++-|.|. +.||.++++.|++.|++|.+.+|+.++.+...+.       ..+.  ..+++..  -+....+++.++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-------i~~~--~~~~~~~~~D~~~~~~~~~~~   73 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ-------CSAL--TDNVYSFQLKDFSQESIRHLF   73 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhc--CCCeEEEEccCCCHHHHHHHH
Confidence            45678889987 5599999999999999999999987765544321       1110  1223322  233456666666


Q ss_pred             cccccccccCC-CCCEEEEcc
Q 018303          145 CGKHGAASGMG-PGKGYVDVS  164 (358)
Q Consensus       145 ~~~~~~~~~l~-~~~~vi~~s  164 (358)
                         +++.+.+. +=.++||..
T Consensus        74 ---~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         74 ---DAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             ---HHHHHHhCCCCCEEEECC
Confidence               55544443 334677665

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.50  E-value=0.063  Score=50.44  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  113 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g  113 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G  210 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG  210 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence            357899999999999999999999999999999887766554444

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.50  E-value=0.048  Score=57.13  Aligned_cols=70  Identities=29%  Similarity=0.357  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc------------hh---------hHHhCCCcc--------C
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK------------CD---------PLISLGAKY--------Q  117 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------------~~---------~~~~~g~~~--------~  117 (358)
                      .-++++|+|||.|.-|.+-|..|-+.||.|++|.|+..-            .+         .+.++|+.+        .
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            456789999999999999999999999999999986431            11         122335433        3


Q ss_pred             CCHHHHhhcCCEEEEeeCC
Q 018303          118 PSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus       118 ~~~~~~~~~aDivi~~vp~  136 (358)
                      .+++++.+.-|.|++|+..
T Consensus      1862 vs~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGS 1880 (2142)
T ss_pred             ccHHHHhhccCeEEEEeCC
Confidence            4789999999999999854

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.50  E-value=0.083  Score=47.22  Aligned_cols=109  Identities=16%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHh----CCCccCCCHHHHhh---cCCEEEEeeCChhhH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAA---SCDVTFAMLADPESA  140 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~---~aDivi~~vp~~~~~  140 (358)
                      .+++|.-||+|. |. ++..++..|.. |+++|.++...+...+    .++.   +..++..   ..|+|+... .....
T Consensus       119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani-~~~~~  192 (250)
T PRK00517        119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANI-LANPL  192 (250)
T ss_pred             CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcC-cHHHH
Confidence            567999999998 74 45556667765 9999999877655433    2321   0001111   478888766 34556


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ..++   +++...+++|..++-. .......+.+.+.+.+.|...+.
T Consensus       193 ~~l~---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~  235 (250)
T PRK00517        193 LELA---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE  235 (250)
T ss_pred             HHHH---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence            6666   7778889999887743 23344556777788777766553

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.052  Score=50.75  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.+++|.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+.       +.+  ..+++.++.+  .+..+++.+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~v~~~   75 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEAVQAA   75 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHHHHHH
Confidence            455678888876 9999999999999999999999987654433221       111  1233433333  234455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +.+.+.+.+=.++||.+.
T Consensus        76 ~---~~~~~~~g~iD~lInnAg   94 (334)
T PRK07109         76 A---DRAEEELGPIDTWVNNAM   94 (334)
T ss_pred             H---HHHHHHCCCCCEEEECCC
Confidence            5   444444444456777654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.48  E-value=0.083  Score=49.26  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+.+.|+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga  209 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA  209 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            367999999999999999999999998 9999988877666555453

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.48  E-value=0.023  Score=52.55  Aligned_cols=65  Identities=26%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.|. |.+|+.+++.|.+.|++|.+.+|+++....+...++.       -..++.++++.+|+|+.+.+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47889975 9999999999999999999999976653322221221       11234566777888877663

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06182 short chain dehydrogenase; Validated

Probab=95.47  E-value=0.079  Score=47.76  Aligned_cols=40  Identities=23%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      +++|.|.|. |.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~   43 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL   43 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            468889985 9999999999999999999999987655433

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.049  Score=48.52  Aligned_cols=40  Identities=25%  Similarity=0.271  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +.+++|.|.|. |.||+.+++.|.+.|++|++.+|+++..+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~   43 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD   43 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            34578889975 99999999999999999999999875443

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.46  E-value=0.049  Score=48.60  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++.|.|. |.||..+++.|.+.|++|.+.+|+++..+..
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   47 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV   47 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence            345678999987 9999999999999999999999987654443

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.038  Score=48.76  Aligned_cols=43  Identities=23%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++.|.|. |.+|..+++.|.+.|++|++++|++++.+.+
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~   49 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRL   49 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            355679999987 8999999999999999999999987654433

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=95.43  E-value=0.21  Score=45.72  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+|.|.|. |..|+...+...+.|-+|. ++++... .+..  .|+..+.++.|+.+.  .|+.++++| ...+.+.+  
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~-~~~i--~G~~~y~sv~dlp~~~~~DlAvI~vP-a~~v~~al--   86 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH--LGLPVFNTVAEAKAETKANASVIYVP-PPFAAAAI--   86 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCC-CceE--cCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence            58999997 9999999999999998866 4665421 1111  367788899998876  799999998 66777777  


Q ss_pred             cccccccCCCCCEEEEccCCChhH--HHHHHHHHHhcCCeEecC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFLEA  188 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~--~~~l~~~l~~~~~~~~~~  188 (358)
                       ++..+.=-+.  +|-++.+.+..  ++.+.+..++.++.++..
T Consensus        87 -~e~~~~Gvk~--~vIisaGf~e~g~~~~~~~~ar~~girviGP  127 (300)
T PLN00125         87 -LEAMEAELDL--VVCITEGIPQHDMVRVKAALNRQSKTRLIGP  127 (300)
T ss_pred             -HHHHHcCCCE--EEEECCCCCcccHHHHHHHHHhhcCCEEECC
Confidence             5554421122  33335544332  334444466677777764

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.056  Score=47.44  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=33.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+++|.|+|. |.+|..+++.|.+.|++|++.+|++++...
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~   45 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEE   45 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHH
Confidence            4568999975 999999999999999999999998765443

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.43  E-value=0.025  Score=49.95  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh-----HHh-CCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----LIS-LGAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ++...+++|+|+ |.||..+|+.|+..+......-|+.+..++     +.+ .+.....+++....+.|++|.....+  
T Consensus       164 dlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~--  241 (351)
T COG5322         164 DLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP--  241 (351)
T ss_pred             CHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC--
Confidence            667789999998 999999999999988877777766543322     111 13333445555555555555444222  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc-CCeEecCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAPV  190 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~-~~~~~~~~~  190 (358)
                      ....+  +   -..+|||.+++|-+.-.-+++     ..++. ++..++...
T Consensus       242 ~g~~I--~---pq~lkpg~~ivD~g~P~dvd~-----~vk~~~~V~Ii~GGl  283 (351)
T COG5322         242 KGVEI--F---PQHLKPGCLIVDGGYPKDVDT-----SVKNVGGVRIIPGGL  283 (351)
T ss_pred             CCcee--c---hhhccCCeEEEcCCcCccccc-----ccccCCCeEEecCcc
Confidence            22233  1   235899999998866443332     33333 355555443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.42  E-value=0.057  Score=52.97  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      .+++|.|||.|..|...|..|+..|++|+++++.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            56799999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.095  Score=46.69  Aligned_cols=41  Identities=17%  Similarity=0.066  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      +.+++|-|+|. |.||..+++.+.+.|++|++.+|+....+.
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~   46 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA   46 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            55679999988 999999999999999999999998655443

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.40  E-value=0.061  Score=47.27  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +.+++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~   43 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE   43 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence            44578999986 99999999999999999999999876544

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=95.39  E-value=0.2  Score=40.22  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             HHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCC
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK  158 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~  158 (358)
                      -..++.|.+.|++|.+=.-.....    +...+.|+...++.++++.+||+|+-.-|.+          .+.+..|++|+
T Consensus        17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~----------~~e~~~l~~g~   86 (136)
T PF05222_consen   17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS----------EEELALLKPGQ   86 (136)
T ss_dssp             HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-------------GGGGGGS-TTC
T ss_pred             HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC----------HHHHhhcCCCc
Confidence            356778888899999854432221    3345568888888889999999998777532          23346789999


Q ss_pred             EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303          159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS  193 (358)
Q Consensus       159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  193 (358)
                      ++|...  .+.....+.+.+.++++..++......
T Consensus        87 ~li~~~--~~~~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   87 TLIGFL--HPAQNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EEEEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             EEEEee--ccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence            999554  444567788888889999888765544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.39  E-value=0.025  Score=52.46  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=23.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC----CcEEEEc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG----CDVTVWN  100 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~  100 (358)
                      +|||+|+|+||+.+.+.+.+.+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5999999999999999988753    6666543

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.38  E-value=0.044  Score=48.16  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      +++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM   45 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            44578999977 8899999999999999999999987655433

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.38  E-value=0.054  Score=49.78  Aligned_cols=66  Identities=23%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh---HHhC------------CCccCCCHHHHhhcCCEEEE
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivi~  132 (358)
                      .+++|.|-|+ |-||+.+.+.|...||.|.+.-|+++..+.   +.+.            .+.-..+++++++.||.|+-
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            5679999987 999999999999999999999998876322   2221            12335678899999999976


Q ss_pred             ee
Q 018303          133 ML  134 (358)
Q Consensus       133 ~v  134 (358)
                      +.
T Consensus        85 ~A   86 (327)
T KOG1502|consen   85 TA   86 (327)
T ss_pred             eC
Confidence            54

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.35  E-value=0.071  Score=47.31  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      |+|.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~   39 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE   39 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            47889975 999999999999999999999998765443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.12  Score=50.71  Aligned_cols=66  Identities=14%  Similarity=0.046  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chh---hHHhCCCcc-CCCHHHHhhcCCEEEEee
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML  134 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivi~~v  134 (358)
                      ++++|+|+|+|.-|.+.++.|.+.|.+|+++|.+.. ...   .+.+.+... .....+.+.++|+||..-
T Consensus         7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp   77 (468)
T PRK04690          7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP   77 (468)
T ss_pred             CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence            457899999999999999999999999999995432 211   233222111 112235567899988765

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.33  E-value=0.042  Score=51.70  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +..+|+|.|.| +|.||+.+++.|.+.|++|++.+|++...+
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~   48 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL   48 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            66778999998 599999999999999999999888765433

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.33  E-value=0.067  Score=48.51  Aligned_cols=55  Identities=20%  Similarity=0.282  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCCHHH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDE  122 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~  122 (358)
                      ..+.+++|+|+|.+|.+++...+.+|. +|++.|.++++.+...+.|++-.-++.|
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d  246 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD  246 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence            356799999999999999999999985 7999999999988888877765545543

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.32  E-value=0.048  Score=51.28  Aligned_cols=88  Identities=15%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             CeEEEEcC-ChhHHHHHH-HHHHCCCc---EEEEcCCc--cchhhHHhCCCccC--CCHHHHhhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~-~l~~~g~~---V~~~~~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++|+|||+ |..|+.+.+ .+....++   +..++...  .+...+........  .+.+ .++++|++++|+| ....+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~-~~~s~   79 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQG-GDYTN   79 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCC-HHHHH
Confidence            58999998 999999998 56666666   55554421  11111111111111  2233 4578999999997 44555


Q ss_pred             hhhcccccccccCCCC--CEEEEccCC
Q 018303          142 DVACGKHGAASGMGPG--KGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~--~~vi~~s~~  166 (358)
                      .+.   +++   .+.|  .++||.|..
T Consensus        80 ~~~---~~~---~~aG~~~~VID~Ss~  100 (369)
T PRK06598         80 EVY---PKL---RAAGWQGYWIDAAST  100 (369)
T ss_pred             HHH---HHH---HhCCCCeEEEECChH
Confidence            555   333   2467  679998743

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.31  E-value=0.066  Score=47.82  Aligned_cols=41  Identities=22%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +++++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~   50 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE   50 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            456678999975 99999999999999999999999865543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.29  E-value=0.064  Score=47.66  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=34.6

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      ++++|.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   44 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA   44 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            346899997 59999999999999999999999987655443

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=95.27  E-value=0.28  Score=45.15  Aligned_cols=111  Identities=13%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~  145 (358)
                      ..||.|-|. |+.|+..++...+.|-+|. ++++... -+.....|+..+.+..|+.+.  +|+.++++| ++...+.+ 
T Consensus        29 ~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkg-g~~v~~~Gvpvy~sv~ea~~~~~~D~avI~VP-a~~v~dai-  105 (317)
T PTZ00187         29 NTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKA-GTTHLKHGLPVFATVKEAKKATGADASVIYVP-PPHAASAI-  105 (317)
T ss_pred             CCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCC-CceEecCCccccCCHHHHhcccCCCEEEEecC-HHHHHHHH-
Confidence            358999998 9999999999999998765 4665431 011111267888999999987  999999998 56666666 


Q ss_pred             ccccccccCCCC-CEEEEccCC-ChhHHHHHHHHHH-hcCCeEecC
Q 018303          146 GKHGAASGMGPG-KGYVDVSTV-DGDTSKLINGHIK-ATGASFLEA  188 (358)
Q Consensus       146 ~~~~~~~~l~~~-~~vi~~s~~-~~~~~~~l~~~l~-~~~~~~~~~  188 (358)
                        .+..+   .| ..+|-++.+ +..+...+.+.++ +.++.++..
T Consensus       106 --~Ea~~---aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGP  146 (317)
T PTZ00187        106 --IEAIE---AEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGP  146 (317)
T ss_pred             --HHHHH---cCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECC
Confidence              33332   33 223333444 4444455665554 357776653

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.26  E-value=0.1  Score=48.93  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-C-CCcEEEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      .+.+|.|+|+|.+|...++.++. . +.+|++.++++++.+.+.+.+...  ..++..+  ..|+|+-++... .....+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence            35789999999999998888875 4 468999999887776654433221  1222222  368888877521 112222


Q ss_pred             cccccccccCCCCCEEEEcc
Q 018303          145 CGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s  164 (358)
                         ...+..++++..++..+
T Consensus       240 ---~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         240 ---NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ---HHHHHhCcCCcEEEEEe
Confidence               33345667777666554

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.12  Score=45.23  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +++++|.|.|. |.+|..+++.|.+.|++|++.+|++++..
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~   45 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS   45 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH
Confidence            45679999976 99999999999999999999999876543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.24  E-value=0.054  Score=47.89  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      ++.+++|.|.| .|.+|..+++.|.+.|++|++.+|++++.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~   43 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA   43 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            45567899998 59999999999999999999999986543

>PRK06398 aldose dehydrogenase; Validated

Probab=95.24  E-value=0.088  Score=47.10  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +++++++.|.|. |.||..+++.|.+.|++|++.+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            456678999975 79999999999999999999998754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.23  E-value=0.079  Score=47.16  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~   48 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL   48 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            356678888875 899999999999999999999998665443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.22  E-value=0.089  Score=48.06  Aligned_cols=109  Identities=11%  Similarity=0.049  Sum_probs=71.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH---hhhhc--
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC--  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~---~~~~~--  145 (358)
                      ++++|||--.==..+++.|.+.|++|..+.-.... ..+  .|+....+.++.++++|+|++.+|-+..-   +..+.  
T Consensus         2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~   78 (287)
T TIGR02853         2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE   78 (287)
T ss_pred             cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence            58999999999999999999999999988753110 111  14555667777799999999999944322   11110  


Q ss_pred             ---ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          146 ---GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ---~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                         -++++++.++++.++. ++.. .   ..+...++++++.+.+
T Consensus        79 ~~~l~~~~l~~~~~~~~~~-~G~~-~---~~l~~~a~~~gi~v~~  118 (287)
T TIGR02853        79 KVVLTPELLESTKGHCTIY-VGIS-N---PYLEQLAADAGVKLIE  118 (287)
T ss_pred             CccccHHHHHhcCCCCEEE-EecC-C---HHHHHHHHHCCCeEEE
Confidence               0345677777655433 2222 2   2344467778887774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.097  Score=48.15  Aligned_cols=41  Identities=22%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ++.+++|.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~   54 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK   54 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            556678988875 99999999999999999999999866543

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=95.21  E-value=0.18  Score=45.41  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCcEEEE--cCCcc--chhhHHhCCCcc------CCCHHHHhhc-CC-EEEEeeCChh
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CD-VTFAMLADPE  138 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~~V~~~--~~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aD-ivi~~vp~~~  138 (358)
                      +|.|.|+ |+||+.+++...+.++++...  ++...  ....+...++..      ..+++++++. +| ++|=-+ .|.
T Consensus         2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~   80 (275)
T TIGR02130         2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS   80 (275)
T ss_pred             eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence            6889998 999999999998888987764  43221  111121113444      6788888877 89 555444 566


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  191 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  191 (358)
                      .+...+   +.   ..+.+..+|--++|....  .+.+.....++.++-+|.+
T Consensus        81 ~~~~n~---~~---~~~~gv~~ViGTTG~~~~--~~~~l~~~~~i~~l~apNf  125 (275)
T TIGR02130        81 AVNDNA---AF---YGKHGIPFVMGTTGGDRE--ALAKLVADAKHPAVIAPNM  125 (275)
T ss_pred             HHHHHH---HH---HHHCCCCEEEcCCCCCHH--HHHHHHHhcCCCEEEECcc
Confidence            666665   22   234455455444443332  2333332233444444443

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.20  E-value=0.086  Score=46.99  Aligned_cols=42  Identities=14%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      +.++++-|.|. |.+|..+++.|.+.|++|.+.+|+.+..+..
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA   46 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            44568889975 9999999999999999999999987655443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.19  E-value=0.058  Score=47.71  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=35.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      +.++++.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~   44 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER   44 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            45578999986 999999999999999999999998765443

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.084  Score=47.57  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      +.+++|.|.|. |.||..+++.|.+.|++|.+.+|++++.+.+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET   45 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            44578999976 9999999999999999999999987665443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.19  E-value=0.073  Score=51.77  Aligned_cols=70  Identities=24%  Similarity=0.392  Sum_probs=53.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch---------------------hhHHhCCCcc--------C
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC---------------------DPLISLGAKY--------Q  117 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------------------~~~~~~g~~~--------~  117 (358)
                      ..++++|+|||.|.-|.+.|..|...|++|+++++.+...                     +.+.+.|+.+        .
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~  199 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD  199 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc
Confidence            4456899999999999999999999999999998865431                     1122233221        3


Q ss_pred             CCHHHHhhcCCEEEEeeCC
Q 018303          118 PSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus       118 ~~~~~~~~~aDivi~~vp~  136 (358)
                      -+++++.++.|.|++++..
T Consensus       200 it~~~L~~e~Dav~l~~G~  218 (457)
T COG0493         200 ITLEELLKEYDAVFLATGA  218 (457)
T ss_pred             CCHHHHHHhhCEEEEeccc
Confidence            4788998889999999853

>PRK06194 hypothetical protein; Provisional

Probab=95.17  E-value=0.07  Score=48.45  Aligned_cols=41  Identities=15%  Similarity=0.053  Sum_probs=34.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~   44 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD   44 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            345678888875 89999999999999999999999765544

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.17  E-value=0.59  Score=41.21  Aligned_cols=155  Identities=14%  Similarity=0.086  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+...+|.|+|+|.+|+.+++.|+..|. +++++|.+.-....+..+        |-..+.-..+-+.  +.++-+...+
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            4556799999999999999999999996 788888764322222111        1111111111111  2344444442


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC-----CH
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-----DK  210 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~  210 (358)
                      .. -+..-+   .+++  ...-.+||++.- .......+.+.+.+.++.++...-.++..    .+.-+-+.+     ..
T Consensus        88 ~~-i~~~~~---~~l~--~~~~D~VvdaiD-~~~~k~~L~~~c~~~~ip~I~s~g~g~~~----dp~~i~i~di~~t~~~  156 (231)
T cd00755          88 EF-LTPDNS---EDLL--GGDPDFVVDAID-SIRAKVALIAYCRKRKIPVISSMGAGGKL----DPTRIRVADISKTSGD  156 (231)
T ss_pred             ee-cCHhHH---HHHh--cCCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeCCcCCC----CCCeEEEccEeccccC
Confidence            11 111111   1111  112356776643 34445567888888888888754333321    111122221     23


Q ss_pred             hHHHHHHHHHHHhc----CCeEEeCC
Q 018303          211 SLYNTVAPLLDIMG----KSRFYLGD  232 (358)
Q Consensus       211 ~~~~~v~~ll~~~g----~~~~~~g~  232 (358)
                      .....++.-|+.-|    ..+++..+
T Consensus       157 pla~~~R~~Lrk~~~~~~~~~v~S~E  182 (231)
T cd00755         157 PLARKVRKRLRKRGIFFGVPVVYSTE  182 (231)
T ss_pred             cHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence            35567777777643    34566555

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.16  E-value=0.08  Score=48.25  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT  102 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~  102 (358)
                      +|.|||+|.+|..+++.|+..|. ++.++|.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999986 57777754

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.15  E-value=0.093  Score=55.19  Aligned_cols=113  Identities=17%  Similarity=0.136  Sum_probs=69.9

Q ss_pred             CeEEEEcCChhHHHH-HHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCC-CHHHHhhcCCEEEEeeCCh---hhHhhhh
Q 018303           71 GRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAMLADP---ESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~-a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~---~~~~~~~  144 (358)
                      ++|.|||+|..|.+. |+.|.+.|++|.++|.+.. ..+.+.+.|+.... ...+.+.++|+||..-.-+   +......
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~   84 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK   84 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence            479999999999997 9999999999999997543 23345555665422 2335567899988764222   2222211


Q ss_pred             ------cccccccccCCCC-C-EEEEccCCChhHHHHHHHHHHhcCC
Q 018303          145 ------CGKHGAASGMGPG-K-GYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       145 ------~~~~~~~~~l~~~-~-~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                            .+..+++..+.++ . +-|--++|+..+..-+...|...+.
T Consensus        85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence                  0112233332233 3 3333356777777777888877653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.14  E-value=0.096  Score=53.65  Aligned_cols=68  Identities=24%  Similarity=0.459  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc---------------------hhhHHhCCCccC--------CC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------PS  119 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---------------------~~~~~~~g~~~~--------~~  119 (358)
                      .+++|.|||.|..|...|..|+..|++|+++++++..                     .+.+...|+...        .+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~  271 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence            4579999999999999999999999999999986532                     122233343321        13


Q ss_pred             HHHHhhcCCEEEEeeCC
Q 018303          120 PDEVAASCDVTFAMLAD  136 (358)
Q Consensus       120 ~~~~~~~aDivi~~vp~  136 (358)
                      .+++....|.|++++..
T Consensus       272 ~~~~~~~~DaVilAtGa  288 (652)
T PRK12814        272 LEELQKEFDAVLLAVGA  288 (652)
T ss_pred             HHHHHhhcCEEEEEcCC
Confidence            44555569999999853

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.14  E-value=0.069  Score=48.28  Aligned_cols=41  Identities=27%  Similarity=0.443  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ++.++++-|.|. |.||+.+++.|.+.|++|.+.+|+.+..+
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~   48 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE   48 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            455678888876 89999999999999999999999865443

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.075  Score=47.67  Aligned_cols=41  Identities=27%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      +.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~   49 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDE   49 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            45678989976 679999999999999999999998765443

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.13  E-value=0.063  Score=49.91  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      ++++-|.|+ |.||.++|+.|++.|++|++.+|++++.+.+
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~   93 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV   93 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            567888876 8899999999999999999999998765544

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.13  E-value=0.1  Score=46.96  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCC
Q 018303           68 ELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        68 ~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      +.++++-|.|.+   .||.++|+.|++.|++|++.+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            456788899997   59999999999999999988886

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.11  E-value=0.072  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +-|+|.|.++.++++.++..|++|+++|..++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            35899999999999999999999999998754

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=95.09  E-value=0.078  Score=51.33  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-----CCcEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGT-PMAQNLLKA-----GCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~-~~a~~l~~~-----g~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~  132 (358)
                      |||.|||.|+.=+ .+.+-+...     +-+|..+|.++++.+....        .|    +..+.|.++++++||+|+.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~   80 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA   80 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence            5899999998511 233333322     3579999999977654321        12    4567899999999999999


Q ss_pred             eeCChh-----------------------------------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHH
Q 018303          133 MLADPE-----------------------------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH  177 (358)
Q Consensus       133 ~vp~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~  177 (358)
                      ..--..                                   .+..++   +++ ....|++++||.++-.......+.+.
T Consensus        81 ~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~---~~i-~~~~pda~lin~tNP~~~vt~~~~~~  156 (437)
T cd05298          81 QIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELI---DDI-EKYSPDAWILNYSNPAAIVAEALRRL  156 (437)
T ss_pred             EeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHH---HHH-HHHCCCeEEEEecCcHHHHHHHHHHH
Confidence            874221                                   111111   222 23458999999988766666666555


Q ss_pred             H
Q 018303          178 I  178 (358)
Q Consensus       178 l  178 (358)
                      .
T Consensus       157 ~  157 (437)
T cd05298         157 F  157 (437)
T ss_pred             C
Confidence            3

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK07877 hypothetical protein; Provisional

Probab=95.08  E-value=0.034  Score=56.92  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccch------------------hhHHh----C--CC--c----
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKC------------------DPLIS----L--GA--K----  115 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~------------------~~~~~----~--g~--~----  115 (358)
                      +...+|+|+|+| +|+.+|..|+..|.  +++++|.+.=..                  +.+++    .  .+  .    
T Consensus       105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             HhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            566799999999 99999999999884  788887642111                  11110    0  00  0    


Q ss_pred             --cCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303          116 --YQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus       116 --~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                        ..++.+++++++|+|+-|+ ++.+++.++
T Consensus       184 ~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~l  213 (722)
T PRK07877        184 GLTEDNVDAFLDGLDVVVEEC-DSLDVKVLL  213 (722)
T ss_pred             cCCHHHHHHHhcCCCEEEECC-CCHHHHHHH
Confidence              0235677888899999999 677777777

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.07  E-value=0.086  Score=49.99  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=38.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+.+.|+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga  237 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA  237 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence            35689999999999999999999998 59989998887766655554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09186 flagellin modification protein A; Provisional

Probab=95.07  E-value=0.099  Score=46.46  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=34.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .++++.|.|. |.||..+|+.|.+.|++|.+.+|++++.+..
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence            4578999976 8999999999999999999999987665443

>PLN02214 cinnamoyl-CoA reductase

Probab=95.05  E-value=0.074  Score=49.89  Aligned_cols=69  Identities=16%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh-----hHHhC--CC-------ccCCCHHHHhhcCCEEE
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL--GA-------KYQPSPDEVAASCDVTF  131 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~--g~-------~~~~~~~~~~~~aDivi  131 (358)
                      ...+++|.|.|. |.+|+.+++.|.+.|++|.+.+|+.+...     .+...  .+       .-..++.++++.+|+||
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            345678999987 99999999999999999999988765321     11100  11       11223456677888887


Q ss_pred             EeeC
Q 018303          132 AMLA  135 (358)
Q Consensus       132 ~~vp  135 (358)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7763

>PLN00198 anthocyanidin reductase; Provisional

Probab=95.04  E-value=0.091  Score=49.05  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ...+++|.|.| +|-+|+.+++.|.+.|++|.+..|+.+.
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~   45 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN   45 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            34467899997 7999999999999999999887776543

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.04  E-value=0.094  Score=46.56  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++-|.| .|.||..+++.|.+.|++|++.+|+.+..+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~   47 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQA   47 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            35567888886 5999999999999999999999997655443

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.03  E-value=0.031  Score=53.52  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ...+++|.|+|. |.||+.+++.|.+.|++|.+.+|++..
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            456789999976 999999999999999999999997653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
3doj_A	310	Structure Of Glyoxylate Reductase 1 From Arabidopsi		4e-90
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		1e-86
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		2e-85
2uyy_A	316	Structure Of The Cytokine-Like Nuclear Factor N-Pac		1e-71
1yb4_A	295	Crystal Structure Of The Tartronic Semialdehyde Red		2e-35
1vpd_A	299	X-Ray Crystal Structure Of Tartronate Semialdehyde		4e-33
3cky_A	301	Structural And Kinetic Properties Of A Beta-Hydroxy		2e-31
2i9p_A	319	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		4e-30
2gf2_A	296	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		4e-30
4dll_A	320	Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re		4e-27
4gbj_A	297	Crystal Structure Of Nad-Binding 6-Phosphogluconate		2e-20
1wp4_A	289	Structure Of Tt368 Protein From Thermus Thermophilu		1e-19
2cvz_A	289	Structure Of Hydroxyisobutyrate Dehydrogenase From		3e-17
3obb_A	300	Crystal Structure Of A Possible 3-Hydroxyisobutyrat		4e-15
3q3c_A	299	Crystal Structure Of A Serine Dehydrogenase From Ps		4e-15
3qha_A	296	Crystal Structure Of A Putative Oxidoreductase From		2e-14
3g0o_A	303	Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge		2e-11
2zyg_A	480	Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas		7e-06
3fwn_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		1e-05
2zya_A	480	Dimeric 6-Phosphogluconate Dehydrogenase Complexed		1e-05

>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310

Iteration: 1
 Score =  328 bits (840), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 202/284 (71%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 262
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K
Sbjct: 263 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/281 (55%), Positives = 201/281 (71%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           + GF+G+GIMG+ MA+NL+KAGC VT+WNR+  K + L +LGA+   +P EV  SC VTF
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AMLADP +A +V  GKHG   G+G G+GYVD+STVD  TS+ I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GSKKPAEDG LI LAAGD++LY+   P  + MGK   +LGDVG GA MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           A F EGL   EK GL  + +++V+  GA++ PM++LKG  + +  +  AFPLKH QKDLR
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352
           LA+ L + V Q    +AAANEL+K A++ G  DEDFSA+ +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFK 283

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/283 (54%), Positives = 196/283 (69%)
Query: 74  GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 133
           GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T AM
Sbjct: 5   GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 193
           LADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVSG+
Sbjct: 65  LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 194 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 253
           KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM  
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 254 FSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA 313
             EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLRLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 314 LGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356
           + L + + Q    AA ANE +K A++ G +DEDF+AV   L+A
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA 287

>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316

Iteration: 1
 Score =  266 bits (681), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 187/282 (66%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 353
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313

>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 1/284 (0%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GI G+P A NL +AG  + V        D L+SLGA    +  +V    D+ F
Sbjct: 5   KLGFIGLGIXGSPXAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIF 63
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             + D     DV  G+HG A     GK  VD S++    +K     +   GA +L+APVS
Sbjct: 64  IXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVS 123
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A +G L     G++ +++ V PL DI+GK+   +G  G+G   K+   +I+   +
Sbjct: 124 GGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNI 183
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              SE L+ + K G DP  + + +  G  S+ +  + G   I   +   F +   QKDL 
Sbjct: 184 EAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDLN 243
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LAL  A++++ + P  A   EL+    ++G S  D SA ++AL+
Sbjct: 244 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXVQALE 287

>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 140/279 (50%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GI G P ++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 7   KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             L +     +VA G++G   G  PG   +D S++    S+ I+  +KA G   L+APVS
Sbjct: 67  TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A DG L     GDK++++    L      S  + GD+G G   KL   +I+   +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           A  SE L  + K G++P+++ + +  G   + +   K P + +  +   F +    KDL 
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
            AL  +  V    P+ AA  E  +  ++ G  ++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285

>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 152/284 (53%), Gaps = 5/284 (1%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGF+G+G MG PMA NLLK G  V  ++  ++    +++ GA+   +  +VAA+ D+ F
Sbjct: 6   KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             L +      V  G  G  S    G   VD+S+V   ++  +       G  +++APVS
Sbjct: 66  TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G  K AE G L  +    ++++  + P+L ++GK  +++GD G G A+K+V N+++G  M
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNM 185
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS---MIESLYPTAFPLKHQQK 308
           A+ +E L+   K GL P  + E++  G  S   Y+++      ++   +   F +  Q K
Sbjct: 186 ASLAEALVLGVKCGLKPETMQEII--GKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHK 243
Query: 309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352
           DL LAL   +  +   P+ A A ++++  ++ GL  ED SAVI+
Sbjct: 244 DLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIK 287

>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
           +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D    
Sbjct: 25  VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
           ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVSG
Sbjct: 85  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 144
Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
               A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M 
Sbjct: 145 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 204
Query: 253 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 304
             +E +    ++GLDP +L ++++  +    S+  Y+   P +++ +     Y   F   
Sbjct: 205 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 263
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 264 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 317

>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 9/294 (3%)
Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
           +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D    
Sbjct: 3   VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
           ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVSG
Sbjct: 63  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 122
Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252
               A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M 
Sbjct: 123 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMI 182
Query: 253 TFSEGLLHSEKVGLDPNVLVEVVSQGA---ISAPMYSLKGPSMIESL-----YPTAFPLK 304
             +E +    ++GLDP +L ++++  +    S+  Y+   P +++ +     Y   F   
Sbjct: 183 GTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYN-PVPGVMDGVPSANNYQGGFGTT 241
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 242 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295

>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 133/287 (46%), Gaps = 2/287 (0%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I FLG G  G P A+ L +AG  + VWNRT ++   L +LGA         A   D+  
Sbjct: 33  KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + L +     DV   + G A+   PG  ++D +++    ++     + A G + L+ PVS
Sbjct: 93  SXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVS 151
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    AE G L+  A G  + +    PLL + G++  ++G  G+G   KL    I+G  +
Sbjct: 152 GGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLANQXIVGITI 210
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              +E LL + K G D   + E ++ G   + +  L G   +E  +     L  Q KD R
Sbjct: 211 GAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKDXR 270
Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
            AL  A+ +    PI     +LY     HGL+D D S +   L ++ 
Sbjct: 271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRN 317

>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 4/281 (1%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I FLG+G +GTP+A+ LL+AG ++ VWNRT SK +PL  LGA    +  +      + F
Sbjct: 7   KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           ++LAD  +  ++   +      +G    +V  ST+  +TS+ +    +  GA ++ AP+ 
Sbjct: 67  SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIF 124
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSM 250
              +           +G+      + P+++   K  F  GD  G    +KL  N  +   
Sbjct: 125 ARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACS 184
Query: 251 MATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQQKD 309
           +    E    +EK G+    + E ++    +AP++   G  +  + Y P AF      KD
Sbjct: 185 LEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKD 244
Query: 310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
           + L L  A  V+   P A      +    + G  + D+ A+
Sbjct: 245 INLTLQTASDVNAPXPFADIIRNRFISGLAKGRENLDWGAL 285

>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 132/291 (45%), Gaps = 22/291 (7%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 125
           ++ F+G+G MG PMA +L +      VWNRT  K         ++Q        P E  A
Sbjct: 3   KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185
              V F  L       +VA   +     +  G  +VD ++ + + S+ +   ++  G ++
Sbjct: 55  EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 186 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 245
           L+APVSG    AE G L  +  G +     V P L    K   ++G VG G A+K + N 
Sbjct: 112 LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 246 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 304
           ++   +    EGLL   K G+     +EV++  +  S    +L    ++   +P  F L 
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
              KDL +A+G+ +     +P+   A E+Y++AK     D D    +EAL+
Sbjct: 231 LLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADH---VEALR 278

>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 22/291 (7%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 125
           ++ F+G+G  G P A +L +      VWNRT  K         ++Q        P E  A
Sbjct: 3   KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185
              V F  L       +VA   +     +  G  +VD ++ + + S+ +   ++  G ++
Sbjct: 55  EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 186 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 245
           L+APVSG    AE G L     G +     V P L    K   ++G VG G A+K + N 
Sbjct: 112 LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 246 IMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAFPLK 304
           ++   +    EGLL   K G+     +EV++  +  S    +L    ++   +P  F L 
Sbjct: 171 LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALG 230
Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
              KDL +A G+ +     +P+   A E+Y+ AK     D D    +EAL+
Sbjct: 231 LLVKDLGIAXGVLDGEKAPSPLLRLAREVYEXAKRELGPDADH---VEALR 278

>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I F+G+G  G P A NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 5   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + L   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 65  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    A  G L F   GD        PL +  G++ F+ G  G G   K+  N ++  + 
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 184
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 303
              +E        GL+  VL E+    S G  +  +Y+   P + E+      Y   F  
Sbjct: 185 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 243
Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
           +   KDL LA   A++ + STP  + A  LY++    G ++ DFS V
Sbjct: 244 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290

>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 9/287 (3%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I F+G+G  G P A NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 4   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + L   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 64  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    A  G L F   GD        PL +  G++ F+ G  G G   K+  N ++  + 
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLLAVLX 183
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESL-----YPTAFPL 303
              +E        GL+  VL E+    S G  +  +Y+   P + E+      Y   F  
Sbjct: 184 IGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYN-PWPGVXENAPASRDYSGGFXA 242
Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAV 350
           +   KDL LA   A++ + STP  + A  LY++    G ++ DFS V
Sbjct: 243 QLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289

>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 12/269 (4%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++G++G+G MG PMA  + +    VTV++       PL   GA    S  +VAA+  +  
Sbjct: 17  KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +L D +   +V     G A    PG      ST+   T+  +   +KA     ++APVS
Sbjct: 77  TVLDDAQ-VREVVGELAGHAK---PGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132
Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    A  G+L  +   D+ +Y  + P          + G+ G G  MKL  NM+  +  
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSY 192
Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQ-GAISAPMYSLKGPSMIESLYPTAF---PLKHQ- 306
           A   E +  +E  GLD   L  VV    A++    ++     ++ L P  F   P  H  
Sbjct: 193 AAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252
Query: 307 ---QKDLRLALGLAESVSQSTPIAAAANE 332
              +KDL LAL L E+VS   P+A  A E
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPLARLAYE 281

>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 121/269 (44%), Gaps = 2/269 (0%)
Query: 86  AQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 144
           A++ L+AG      +     C  L++ GA     S  E A   D    ++ +      V 
Sbjct: 23  ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 204
            G+ G A    PG      ST+    ++ I   + A   + L+APVSG    A  G+   
Sbjct: 83  FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTV 142
Query: 205 LAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGSMMATFSEGLLHSEK 263
            A+G ++ +  + P+LD +  + + + D  G G+ +K++  ++ G  +A  +E    + +
Sbjct: 143 XASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAAR 202
Query: 264 VGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323
            G+  +V  +VV+  A ++  +  +   +++  Y     +    KDL L    A+++   
Sbjct: 203 AGIPLDVXYDVVTHAAGNSWXFENRXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP 262
Query: 324 TPIAAAANELYKVAKSHGLSDEDFSAVIE 352
            P+A+ A   +  A + G   ED SAVI+
Sbjct: 263 LPLASTALNXFTSASNAGYGKEDDSAVIK 291

>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
           +IG +GM +MG  +A N+   G  V+V+NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVES- 75
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
                 L  P   + +     G  S +   K Y+D     +DG      DT +  N  + 
Sbjct: 76  ------LETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
           A G +F+   VSG ++    G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGTLKGPSI-MPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
           +    +L      +    G   A   + P   Y+D     +DG      DT +  N  + 
Sbjct: 77  ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
           A G +F+   VSG ++ A  G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 127
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 179
           +    +L      +    G   A   + P   Y+D     +DG      DT +  N  + 
Sbjct: 77  ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 180 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 232
           A G +F+   VSG ++ A  G  I +  G K  Y  VAP+L  +            Y+G 
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 233 VGNGAAMKLVVNMIMGSMMATFSE 256
            G G  +K+V N I    M   +E
Sbjct: 188 DGAGHYVKMVHNGIEYGDMQLIAE 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	1e-125
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	1e-125
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	1e-125
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	1e-125
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	1e-105
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	6e-92
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	5e-88
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	7e-88
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	7e-86
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	7e-85
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	1e-84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	3e-84
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	3e-76
3qha_A	296	Putative oxidoreductase; seattle structural genomi	1e-72
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	2e-61
4ezb_A	317	Uncharacterized conserved protein; structural geno	2e-45
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	2e-41
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	1e-20
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	2e-16
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	1e-15
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	1e-12
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	7e-09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	8e-09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	5e-08
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	7e-08
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	2e-07
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	3e-07
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	1e-06
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	2e-06
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	5e-06
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	1e-05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	8e-05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	9e-05
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-04
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	1e-04
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	2e-04
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	2e-04
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	2e-04
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-04
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	3e-04
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-04
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-04

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score =  362 bits (931), Expect = e-125
 Identities = 166/287 (57%), Positives = 203/287 (70%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +GFLG+GIMG  M+ NLLK G  VTVWNRT SKCD L+  GA    SP EV   C  T 
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AML+DP +A+ V   K G    +  GKGY+D+STVD +TS  IN  I   G  F+E PVS
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GSKKPAEDGQLI LAAGDK+L+    P  D++GK  FYLG VGNGA MKL+VNMIMGSMM
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMM 202

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
             FSEGL+ ++K GL  + L++++  GA++ PM+  KGPSM +S YP AFPLKHQQKD+R
Sbjct: 203 NAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMR 262

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
           LAL L +  + S P+AAAANE +K A+S GL D DFSAVIEA+K  +
Sbjct: 263 LALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score =  361 bits (929), Expect = e-125
 Identities = 156/284 (54%), Positives = 202/284 (71%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           + GF+G+GIMG+ MA+NL+KAGC VT+WNR+  K + L +LGA+   +P EV  SC VTF
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AMLADP +A +V  GKHG   G+G G+GYVD+STVD  TS+ I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GSKKPAEDG LI LAAGD++LY+   P  + MGK   +LGDVG GA MKLVVNM+MG MM
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMM 182

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           A F EGL   EK GL  + +++V+  GA++ PM++LKG  + +  +  AFPLKH QKDLR
Sbjct: 183 ACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLR 242

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
           LA+ L + V Q    +AAANEL+K A++ G  DEDFSA+ +  +
Sbjct: 243 LAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score =  360 bits (926), Expect = e-125
 Identities = 153/285 (53%), Positives = 196/285 (68%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
             GFLG+GIMG PMA NL++AG DVTVWNR  +KC PL++LGA+   SP EV A+CD+T 
Sbjct: 3   TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITI 62

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           AMLADP +A +V  G +G   G+G G+GY+D+STVD +TS  I   + A G  FLEAPVS
Sbjct: 63  AMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS 122

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+KKPAEDG LI LAAGD+SL+    P    +GK   +LG+VG GA MKLVVNMIMG MM
Sbjct: 123 GTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMM 182

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
               EG+      GLD   L+EV+  GA++ PM+  KG  ++   +PT+FPLKH QKDLR
Sbjct: 183 TALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLR 242

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356
           LA+ L + + Q    AA ANE +K A++ G +DEDF+AV   L+A
Sbjct: 243 LAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLEA 287

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score =  361 bits (928), Expect = e-125
 Identities = 132/283 (46%), Positives = 187/283 (66%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGFLG+G+MG+ +  NLLK G  VTVWNRT  KCD  I  GA+   +P EV ++CD+TF
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           A ++DP++A D+  G  G   G+ PGK YVD+STVD DT   +   I + G  FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G+++ + DG L+ LAAGD+ LY   +     MGK+ F+LG+VGN A M L+VNM+ GS M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           AT +EGL  ++  G     L+++++QG +++     K  ++++  +   F LK+ QKDLR
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 354
           LA+ L ++V+  TP+AAAANE+YK AK+   SD D SAV  A 
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score =  309 bits (794), Expect = e-105
 Identities = 57/290 (19%), Positives = 110/290 (37%), Gaps = 6/290 (2%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +  +G+G MGT MAQ LLK G  V +WNR+  K   L++ GA    S     ++   T 
Sbjct: 11  DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATI 70

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +L D  +  +V  G  G A  +   +  VD +T   D    + G +   G  +++  + 
Sbjct: 71  FVLLDNHATHEV-LGMPGVARAL-AHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIV 128

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
              +     +   +  GD+  +     LL+ +     +L       A   V++    + M
Sbjct: 129 AYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAAM 187

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQ--GAISAPMYSLKGPSMIESLYPTA-FPLKHQQK 308
            TF E +   ++ GL  +    ++ +      A         +    +      L     
Sbjct: 188 VTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHAD 247

Query: 309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
                     +    TP+  A  ++ + A + G  D+D +A  ++   ++
Sbjct: 248 AFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score =  276 bits (708), Expect = 6e-92
 Identities = 88/284 (30%), Positives = 150/284 (52%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMG PM++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 7   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            ML +     +VA G++G   G  PG   +D+S++    S+ I+  +KA G   L+APVS
Sbjct: 67  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 126

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A DG L  +  GDK++++    L+  M  S  + GD+G G   KL   +I+   +
Sbjct: 127 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNI 186

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
           A  SE L  + K G++P+++ + +  G   + +   K P +++  +   F +    KDL 
Sbjct: 187 AAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 246

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
            AL  +  V    P+ AA  E+ +  ++ G  ++D SA+    +
Sbjct: 247 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYE 290

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score =  266 bits (682), Expect = 5e-88
 Identities = 88/285 (30%), Positives = 151/285 (52%), Gaps = 1/285 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IGF+G+G MG PMA NLLK G  V  ++  ++    +++ GA+   +  +VAA+ D+ F
Sbjct: 6   KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             L +      V  G  G  S    G   VD+S+V   ++  +       G  +++APVS
Sbjct: 66  TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G  K AE G L  +    ++++  + P+L ++GK  +++GD G G A+K+V N+++G  M
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNM 185

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIES-LYPTAFPLKHQQKDL 310
           A+ +E L+   K GL P  + E++ + +  +     K    I S  +   F +  Q KDL
Sbjct: 186 ASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDL 245

Query: 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
            LAL   +  +   P+ A A ++++  ++ GL  ED SAVI+  +
Sbjct: 246 GLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWE 290

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score =  265 bits (681), Expect = 7e-88
 Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 1/285 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMG+PMA NL +AG  + V        D L+SLGA    +  +V    D+ F
Sbjct: 5   KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVA-DELLSLGAVNVETARQVTEFADIIF 63

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            M+ D     DV  G+HG A     GK  VD+S++    +K     +   GA +L+APVS
Sbjct: 64  IMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVS 123

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G +  A +G L  +  G++ +++ V PL DI+GK+   +G  G+G   K+   +I+   +
Sbjct: 124 GGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNI 183

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              SE L+ + K G DP  + + +  G  S+ +  + G  MI   +   F +   QKDL 
Sbjct: 184 EAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLN 243

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356
           LAL  A++++ + P  A   EL+    ++G S  D SA+++AL+ 
Sbjct: 244 LALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score =  261 bits (669), Expect = 7e-86
 Identities = 90/286 (31%), Positives = 142/286 (49%), Gaps = 2/286 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I FLG G MG PMA+ L +AG  + VWNRT ++   L +LGA         A   D+  
Sbjct: 33  KITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           +ML +     DV   + G A+ M PG  ++D++++    ++     + A G + L+ PVS
Sbjct: 93  SMLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVS 151

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    AE G L+ +A G  + +    PLL + G++  ++G  G+G   KL   MI+G  +
Sbjct: 152 GGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRA-THVGPHGSGQLTKLANQMIVGITI 210

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311
              +E LL + K G D   + E ++ G   + +  L G  M+E  +     L  Q KD+R
Sbjct: 211 GAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMR 270

Query: 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
            AL  A+ +    PI     +LY     HGL+D D S +   L ++
Sbjct: 271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score =  258 bits (661), Expect = 7e-85
 Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 2/288 (0%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVT 130
            +G +G+G MG   A++ L+AG      +     C  L++ GA     S  E A   D  
Sbjct: 9   HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDAL 68

Query: 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 190
             ++ +      V  G+ G A  M PG   +  ST+    ++ I   + A   + L+APV
Sbjct: 69  VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPV 128

Query: 191 SGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMGS 249
           SG    A  G++  +A+G ++ +  + P+LD +  + + + D  G G+ +K++  ++ G 
Sbjct: 129 SGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGV 188

Query: 250 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD 309
            +A  +E +  + + G+  +V+ +VV+  A ++ M+  +   +++  Y     +    KD
Sbjct: 189 HIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKD 248

Query: 310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357
           L L    A+++    P+A+ A  ++  A + G   ED SAVI+    +
Sbjct: 249 LGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score =  257 bits (659), Expect = 1e-84
 Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 7/294 (2%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +GF+G+G MG PMA+NL+K G  + +++     C      G +   SP +VA   D   
Sbjct: 2   PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            ML    +A++   G +G    +  G   +D ST+D   SK +   ++  GA F++APVS
Sbjct: 62  TMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVS 121

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    A  G L F+  G +  +     LL  MG +  Y G VG G A K+  NM++   M
Sbjct: 122 GGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISM 181

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLKGPSMIESLYPTAFPLK 304
              +E +    ++GLDP +L ++++  +          P+  +       + Y   F   
Sbjct: 182 IGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTT 241

Query: 305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK 358
              KDL LA   A S      + + A+++Y++  + G S +DFS+V + L+ ++
Sbjct: 242 LMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score =  235 bits (602), Expect = 3e-76
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 7/285 (2%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++ F+G+G MG PMA +L +      VWNRT  K           +  P E  A   V F
Sbjct: 3   KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIF 60

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
             L       +V          +  G  +VD ++ + + S+ +   ++  G ++L+APVS
Sbjct: 61  TCLPTTR---EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 117

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    AE G L  +  G +     V P L    K   ++G VG G A+K + N ++   +
Sbjct: 118 GGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNL 176

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310
               EGLL   K G+     +EV++     S    +L    ++   +P  F L    KDL
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL 236

Query: 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355
            +A+G+ +     +P+   A E+Y++AK     D D    +  L+
Sbjct: 237 GIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLE 281

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score =  226 bits (579), Expect = 1e-72
 Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 12/283 (4%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++G++G+G MG PMA  + +    VTV++       PL   GA    S  +VAA+  +  
Sbjct: 17  KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +L D      V       A    PG      ST+   T+  +   +KA     ++APVS
Sbjct: 77  TVLDDA----QVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           G    A  G+L  +   D+ +Y  + P          + G+ G G  MKL  NM+  +  
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSY 192

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQ-----GAISAPMYSLKGPSMIESLY---PTAFPL 303
           A   E +  +E  GLD   L  VV       G   A M       +    +   P     
Sbjct: 193 AAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252

Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED 346
              +KDL LAL L E+VS   P+A  A E           +++
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score =  198 bits (506), Expect = 2e-61
 Identities = 58/286 (20%), Positives = 100/286 (34%), Gaps = 12/286 (4%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKC--DPLISLGAKYQPSPDEVAASCD 128
           ++GF+G G   + +A  L +AG  D+  ++   ++        LG   + S  EVA  CD
Sbjct: 26  KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECD 85

Query: 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188
           V F+++     A++VA     A   +  G  Y D ++      + I   I     S   A
Sbjct: 86  VIFSLVTAQA-ALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYA 141

Query: 189 PVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 248
            V+        G  + L           A       +     G+VG  A +K+  + ++ 
Sbjct: 142 AVAVMSAVKPHGHRVPLVVDGDGARRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLK 201

Query: 249 SMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQK 308
            + A F E L  +EK+GL   VL  + +               ++E     A    H   
Sbjct: 202 GLEALFLEALAAAEKMGLADRVLASLDASFP--EHHLRDLALYLVERNLEHADRRAH--- 256

Query: 309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 354
           +L        SV     +A A             + +     + A 
Sbjct: 257 ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAW 302

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317

 Score =  157 bits (397), Expect = 2e-45
 Identities = 55/299 (18%), Positives = 105/299 (35%), Gaps = 25/299 (8%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP------SPDEVA 124
            I F+G G     +A  L       +  ++   +      +L A+               
Sbjct: 26  TIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGI 85

Query: 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 184
           A  DV  +++    +   VA     AA  +     ++D+++V  DT  L  G I     S
Sbjct: 86  ACADVVLSLVV-GAATKAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141

Query: 185 FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVV 243
           F+E  V     P  +   I +A         VA  L+ +G +        G  +++K++ 
Sbjct: 142 FVEGAVMARVPPYAEKVPILVAGRRAV---EVAERLNALGMNLEAVGETPGQASSLKMIR 198

Query: 244 NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPL 303
           ++++  + A   E L  +E+ G+   +L  V          +       +   +      
Sbjct: 199 SVMIKGVEALLIEALSSAERAGVTERILDSVQET--FPGLDWRDVADYYLSRTFEHGAR- 255

Query: 304 KHQQKDLRLALGLAESVSQSTPIAAAANELYK----VAKSHGLSDED-FSAVIEALKAK 357
             +  ++  A    ES   + P++ AA E         K  GLS  D +   +  L  +
Sbjct: 256 --RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264

 Score =  145 bits (366), Expect = 2e-41
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           R+GF+G G +   +A  L   G +V      +S      +       + +E   SC V  
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + +  P  A+  A       +G      YVD++ +  +T ++ +  I+  G  F++A + 
Sbjct: 62  SAVT-PGVALGAA-----RRAGRHVRGIYVDINNISPETVRMASSLIEKGG--FVDAAIM 113

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
           GS +       I  +  D         L            + G+ +A+K++ +     + 
Sbjct: 114 GSVRRKGADIRIIASGRDAE---EFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKGVS 170

Query: 252 ATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF 301
           A   E L  + ++GL+ +VL  +          +     S ++S    A 
Sbjct: 171 ALLWETLTAAHRLGLEEDVLEML---EYTEGNDFRESAISRLKSSCIHAR 217

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 89.4 bits (221), Expect = 1e-20
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDV 129
            I  +G G + T +A+ L + G  +  V++RT+     L   + A+Y     EV     +
Sbjct: 12  PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71

Query: 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 189
               L D   A ++     G   G       V  +        +  GH+   G  +    
Sbjct: 72  YIVSLKDSAFA-ELL---QGIVEGKREEALMVHTAGSIP--MNVWEGHVPHYGVFYPMQT 125

Query: 190 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS 249
            S  ++        F+ A        +  +   +    +   D     ++ L        
Sbjct: 126 FSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYD-ADSEQRKSLHLAAVFTCNF 184

Query: 250 MMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA----PMYSLKGP 290
               ++      +K  L  +V++ ++ + A       P  +  GP
Sbjct: 185 TNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTGP 229

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 8/174 (4%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++G LG G     +A  L+ +G  V V +R   +   L    A+     +E  +S +V F
Sbjct: 30  KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQ-VTFQEEAVSSPEVIF 88

Query: 132 AMLADP-----ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186
             +         S  D   GK          + ++     + +    +        A F 
Sbjct: 89  VAVFREHYSSLCSLSDQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKA-FN 147

Query: 187 EAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 239
                  +    DG   + +          V+ +   MG     +G + +   +
Sbjct: 148 VISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASAWEV 201

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 75.2 bits (184), Expect = 1e-15
 Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 11/198 (5%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            + F+G G +     + L        + +R+  +   L  +      + ++      V F
Sbjct: 4   VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            ++ D                      G   +    G  S  I             +  S
Sbjct: 64  VIVPDRYIKTVAN----------HLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSS 113

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM 251
             K      Q++F   GD+     V  + + +    F +       A  L   +     +
Sbjct: 114 LEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS-EKKKAYHLAAVIASNFPV 172

Query: 252 ATFSEGLLHSEKVGLDPN 269
           A           +GLD  
Sbjct: 173 ALAYLSKRIYTLLGLDEP 190

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 65.1 bits (158), Expect = 1e-12
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 9/173 (5%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +   G G  G  +   +L+ G  V   +R       L+  GA+      E A+  DV  
Sbjct: 21  VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSS-LLPRGAEV-LCYSEAASRSDV-- 76

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +LA      D       +  G        +        S          GA  ++A  +
Sbjct: 77  IVLAVHREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNT 136

Query: 192 GSKKPAEDGQL-----IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 239
            S    + G L     +F+   D    + V  +   +G +    G +     +
Sbjct: 137 ISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKEI 189

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF- 131
           +G +G+G+MG  +A N+ + G  V V+NRT SK +  +   A    + +  A      F 
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63

Query: 132 AMLADPESAMDVACGKHGAA-----SGMGPGKGYVDVSTVDGDTSKLING-----HIKAT 181
           A L  P  A+ +   + GAA       +       D+  VD   +   +       ++A 
Sbjct: 64  ASLKKPRKALILV--QAGAATDSTIEQLKKVFEKGDI-LVDTGNAHFKDQGRRAQQLEAA 120

Query: 182 GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR------FYLGDVG 234
           G  FL   +SG ++ A  G   F   G  S++  + P++     K+          G  G
Sbjct: 121 GLRFLGMGISGGEEGARKGPAFF-PGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGG 179

Query: 235 NGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEVVSQ 277
            G+ +K+  N    +++  + E   +L +  +GL+ + +  V+  
Sbjct: 180 AGSCVKMYHNSGEYAILQIWGEVFDILRA--MGLNNDEVAAVLED 222

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 27/197 (13%), Positives = 48/197 (24%), Gaps = 20/197 (10%)

Query: 72  RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 130
            +  LG  G MG  + + +  +   +          D L  +G       D      DV 
Sbjct: 13  TVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVV 71

Query: 131 FAMLADPESAM-DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI------------NGH 177
              L  P++ +  VA         + PG   + +         +                
Sbjct: 72  VLAL--PDNIIEKVA---EDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHP 126

Query: 178 IKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGA 237
                 +   A        A+   +  L  G +  Y   A + + M         V    
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186

Query: 238 AMKLVVNMIMGSMMATF 254
              L   +     M   
Sbjct: 187 LAILEPGLSEMVAMPFV 203

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 21/171 (12%), Positives = 38/171 (22%), Gaps = 11/171 (6%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--PLISLGAKYQPSPDEVAASCDV 129
            I   G G MG  +  N   AG +VT +           ++ +   Y             
Sbjct: 21  EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQ---- 76

Query: 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 189
                A       V    +               S+   +  + +         +   A 
Sbjct: 77  ----YATQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAA 132

Query: 190 VSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM 239
              S +        + +A  D S        L          G +     +
Sbjct: 133 TLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 32/200 (16%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL--------------ISLGAKYQ 117
           +I  LG G +G  MA  L   G +VT+  R                      +       
Sbjct: 21  KIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80

Query: 118 PSPDEVAASCDVTFAMLADPESAMDVA----------------CGKHGAASGMGPGKGYV 161
            +     A+         +  S++                         + GM P    V
Sbjct: 81  LAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPV 140

Query: 162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLYNTVAPLL 220
           +  ++     +           + + A +      A  G   +F++  D +    VA LL
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLL 200

Query: 221 DIMGKSR-FYLGDVGNGAAM 239
             +G      LGD+      
Sbjct: 201 KSLGHQDVIDLGDITTARGA 220

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS 126
           +IG +G+G MG  M + L K G +  V++   +    L   G     S +E  A 
Sbjct: 24  QIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAK 78

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVT 130
           +IG +G+G M + + + L +   ++ +   +  +   +   L   Y  S  ++    D+ 
Sbjct: 5   KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 64

Query: 131 F 131
            
Sbjct: 65  I 65

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 45/231 (19%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQP--SPDEVAASC 127
           +IG +GM +MG  +A N+   G  V+++NR++ K + +I+   G K  P  +  E   S 
Sbjct: 17  QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVES- 75

Query: 128 DVTFAMLADPESAMDVACGKHGAA---------SGMGPGKGYVDVSTVDG------DTSK 172
                 L  P   + +   K GA            +  G    D+  +DG      DT +
Sbjct: 76  ------LETPRRILLMV--KAGAGTDAAIDSLKPYLDKG----DI-IIDGGNTFFQDTIR 122

Query: 173 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSR---- 227
                + A G +F+   VSG ++ A  G  I    G K  Y  VAP+L  I   +     
Sbjct: 123 RNR-ELSAEGFNFIGTGVSGGEEGALKGPSIM-PGGQKEAYELVAPILTKIAAVAEDGEP 180

Query: 228 --FYLGDVGNGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEV 274
              Y+G  G G  +K+V N I    M   +E   LL    + L    L + 
Sbjct: 181 CVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKG-GLNLTNEELAQT 230

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 46/232 (19%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQP--SPDEVAASC 127
             G +GM +MG  +A N+   G  V ++NRT SK + +             + +E   S 
Sbjct: 7   NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGS- 65

Query: 128 DVTFAMLADPESAMDVACGKHGAA---------SGMGPGKGYVDVSTVDG------DTSK 172
                 L  P   M +   + GAA           +  G    D+  +DG      DT +
Sbjct: 66  ------LEKPRRIMLMV--QAGAATDATIKSLLPLLDIG----DI-LIDGGNTHFPDTMR 112

Query: 173 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL-DIMGKSRF--- 228
                +  +G +F+   VSG +K A  G  +    G K  Y+ VAP+   I  K+     
Sbjct: 113 RNA-ELADSGINFIGTGVSGGEKGALLGPSMM-PGGQKEAYDLVAPIFEQIAAKAPQDGK 170

Query: 229 ----YLGDVGNGAAMKLVVNMIMGSMMATFSE--GLLHSEKVGLDPNVLVEV 274
               Y+G  G G  +K+V N I    M   +E   LL    +GL    +  +
Sbjct: 171 PCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKR-ILGLSNAEIQAI 221

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 19/187 (10%)

Query: 72  RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP------DEVA 124
           R+  LG  G +G  +A  L   G ++ V +R + K +   +   +           +E A
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61

Query: 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 184
           A       +    E A+D A                V VS      +           A 
Sbjct: 62  AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121

Query: 185 FL-EAPVSGSKKPAEDGQL----------IFLAAGDKSLYNTVAPLL-DIMGKSRFYLGD 232
            L    V  +       +           + +   D      V  L+ +I G      G 
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181

Query: 233 VGNGAAM 239
           + N   +
Sbjct: 182 LSNSRLV 188

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAAS 126
           +IGF+G G MG  M   ++         +   +   +         G       +EVA +
Sbjct: 4   QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKN 63

Query: 127 CDVTF 131
            D+  
Sbjct: 64  ADILI 68

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 15/123 (12%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT- 130
            +  LG G +  P    L  +G  VTV  RT      L +              S DV  
Sbjct: 5   SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA------GVQHSTPISLDVND 58

Query: 131 ----FAMLADPE---SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 183
                A +A  +   S +          S +   K  V  S         ++   K  G 
Sbjct: 59  DAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTS-YVSPAMMELDQAAKDAGI 117

Query: 184 SFL 186
           + +
Sbjct: 118 TVM 120

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDV 129
            +  LG+G +G  +A+     G  V V  R       +  +G +        +     DV
Sbjct: 157 NVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDV 216

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 72  RIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
            +G +G+G +   +A+  +   G  +  ++   +  +   +LGA+   S +E+A   D 
Sbjct: 165 VLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDC 223

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAA 125
            +GF+G G +   +A+    AG      +   +             +G K  P   E   
Sbjct: 24  SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83

Query: 126 SCDVTF 131
             DV F
Sbjct: 84  HSDVLF 89

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASC 127
            I F+G G M   +   L+  G     + V NR+  K D      G        + A + 
Sbjct: 5   NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64

Query: 128 DVTF 131
           DV  
Sbjct: 65  DVVV 68

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC 127
           ++GF+G+G MG+ +A  +  A      ++  +  +K            Y  S +E+A  C
Sbjct: 6   KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHC 59

Query: 128 DVTF 131
           D+  
Sbjct: 60  DIIV 63

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 111
            I  +G+ +MG  +  N+   G  V  +NRT SK D  ++
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA 43

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
            +G  G G +G  +A+       D+  ++  ++      S  A +  S D + +    
Sbjct: 148 TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQF 205

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 62  GVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 115
           G      +    G +G+ +MG  +  N    G  V  +NRT+SK D  ++  AK
Sbjct: 2   GHHHHHHMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK 55

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
           RIG LG+G +G  +A      G  V  WNR+      L  +      SP ++A   DV
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGMSVRYWNRS-----TLSGVDWIAHQSPVDLARDSDV 225

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
           R+G +G+G +G  +A+      C ++ ++R+        +    Y  S  E+A++ D+
Sbjct: 166 RVGIIGLGRIGLAVAERAEAFDCPISYFSRS-----KKPNTNYTYYGSVVELASNSDI 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	100.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	100.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	100.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	100.0
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	100.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	100.0
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	100.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	100.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	100.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	100.0
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	100.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	100.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	100.0
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	100.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	100.0
4ezb_A	317	Uncharacterized conserved protein; structural geno	100.0
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	100.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.98
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.97
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.97
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.97
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.96
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.96
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.95
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.95
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.95
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.95
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.95
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.94
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.94
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.94
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.94
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.94
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.93
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.93
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.93
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.93
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.93
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.93
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.93
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.93
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.93
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.92
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.92
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.92
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.92
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.92
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.92
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.92
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.92
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.92
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.91
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.91
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.91
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.91
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.91
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.91
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.91
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.91
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.91
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.9
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.9
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.89
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.89
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.89
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.89
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.88
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.88
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.88
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.87
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.87
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.87
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.87
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.87
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.87
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.87
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.87
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.86
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.86
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.85
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.85
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.84
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.83
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.82
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.82
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.81
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.8
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.8
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.79
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.79
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.79
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.79
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.79
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.77
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.76
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.76
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.76
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.76
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.71
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.71
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.71
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.7
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.54
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.68
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.67
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.66
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.65
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.64
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.63
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.62
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.59
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.45
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.44
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.44
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.44
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.41
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.39
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.36
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.34
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.31
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.23
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.22
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.16
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.11
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.11
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.11
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.06
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.02
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.0
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.98
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.9
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.88
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.87
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.86
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.82
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.81
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.8
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.78
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.78
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.77
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.76
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.75
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.74
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.74
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.73
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.73
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.72
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.72
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.72
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.7
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.7
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.7
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.69
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.68
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.67
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.67
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.67
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.66
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.65
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.65
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.64
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.63
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.63
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.62
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.62
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.61
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.61
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.6
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.6
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.58
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.58
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.57
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.55
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.55
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.54
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.54
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.54
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.53
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.53
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.52
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.49
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.49
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.48
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.47
4had_A	350	Probable oxidoreductase protein; structural genomi	98.47
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.46
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.46
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.45
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.44
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.44
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.43
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.42
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.42
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.42
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.42
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.41
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.41
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	98.39
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.39
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.38
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.38
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.37
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.36
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.36
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.35
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.35
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.35
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.34
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.33
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.33
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.33
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.32
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.32
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.31
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.29
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.28
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.28
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.28
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.27
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.26
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.25
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.25
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.23
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.2
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.2
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	98.19
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.18
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.18
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.17
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.17
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.16
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.16
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.15
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.14
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.14
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.13
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.12
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.12
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.12
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.12
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.12
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.12
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.11
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.09
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.09
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.08
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	98.08
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.07
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.07
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.06
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.06
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.02
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.02
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.02
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.01
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.01
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.0
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.99
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.98
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.98
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.96
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.95
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	97.95
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.94
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.93
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.91
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.87
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.85
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.84
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.84
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.83
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.83
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.81
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.8
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.8
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.79
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.77
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.77
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	97.76
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.75
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.73
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.71
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.7
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.7
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.65
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.62
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.62
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.61
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.6
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.6
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.57
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.51
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.48
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.45
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.45
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.44
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.42
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.41
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.38
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.38
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.38
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.38
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.36
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.34
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.3
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.3
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.29
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.25
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.25
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.25
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.22
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.22
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.2
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.2
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.19
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.15
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.11
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.11
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.09
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.05
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.04
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.02
2csu_A	457	457AA long hypothetical protein; structural genomi	96.99
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.97
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.95
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.95
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.94
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.94
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.92
1lnq_A	336	MTHK channels, potassium channel related protein;	96.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.9
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	96.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.9
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.89
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.87
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.84
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.83
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.82
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.8
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.77
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.77
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.73
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.7
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.69
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.69
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.68
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.67
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.67
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.66
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.65
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.65
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.64
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.64
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.64
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.59
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.58
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.58
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.58
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.56
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.56
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.54
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.52
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.51
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.51
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.49
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.48
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.47
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.46
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	96.45
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.45
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.45
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.44
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.44
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.44
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.43
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.43
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.42
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.41
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.4
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.4
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.4
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.39
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.39
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.39
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.39
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.39
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.37
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.37
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.36
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.35
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.35
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.33
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.33
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.33
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.33
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.32
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.31
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.29
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.29
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.28
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.28
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.26
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.25
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.24
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.23
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.23
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.23
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.22
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.2
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.2
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.19
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.18
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.17
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.17
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.17
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.15
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.15
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.15
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.15
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.14
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.14
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.14
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.13
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.12
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.12
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.11
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.09
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.09
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.08
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.08
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.07
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.07
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.07
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.07
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.06
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.05
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.04
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.04
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.03
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.02
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.01
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.99
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.99
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.98
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.97
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.97
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.97
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	95.96
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.96
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.95
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.95
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	95.95
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.95
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	95.95
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.95
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.94
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.93
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.93
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.93
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.92
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	95.92
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.92
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.91
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.91
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.9
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.89
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.89
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.87
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	95.87
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.85
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.84
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.84
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.84
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.83
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.83
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.83
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.81
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.81
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.8

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=4.7e-49  Score=359.54  Aligned_cols=288  Identities=28%  Similarity=0.464  Sum_probs=274.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ++||||||+|.||..+|++|.+.|++|++|||++++.+.+.+.|.....++.|+++.||+|++|+|.+++++.++++...
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999976667


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +++.+++|+++||+|+..|.+.+++.+.+.++|+.|+|+|+++++..+..+++.++++|+++.+++++++|+.+|.++++
T Consensus        83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~  162 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFH  162 (300)
T ss_dssp             STTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-------ccccCCCCCCCc
Q 018303          230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFP  302 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~  302 (358)
                      +|+.|.++..|+++|.+...++++++|++.++++.|+|++.+.++++.+++.+|.++.+.|       .+..++|.++|.
T Consensus       163 ~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~  242 (300)
T 3obb_A          163 AGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFM  242 (300)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSB
T ss_pred             eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccch
Confidence            9999999999999999999999999999999999999999999999999999999987765       355678899999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          303 LKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       303 ~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      ++.+.||++++.+++++.|+++|+.+.+.++++++.++|++++|+++++++|++.
T Consensus       243 ~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~  297 (300)
T 3obb_A          243 AQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT  297 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999763

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=2.4e-47  Score=348.50  Aligned_cols=284  Identities=25%  Similarity=0.416  Sum_probs=265.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      +||||||+|.||..+|++|.+.||+|++|||++++.+.+.+.|.....++.|+++++|+|++|+|.+..++.++  ...+
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~--~~~~   83 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELF--SMEL   83 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHS--CHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHH--HHHH
Confidence            48999999999999999999999999999999999999988899999999999999999999999888888887  3557


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      ...++++.++||+|+..|.+.+.+.+.+.++|+.|+++|+++++.....+++.++.+|+++.+++++++|+.+|.+++++
T Consensus        84 ~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~  163 (297)
T 4gbj_A           84 VEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDF  163 (297)
T ss_dssp             HHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred             HhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEe
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCC-CCchhhHHH
Q 018303          231 GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQK  308 (358)
Q Consensus       231 g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~k  308 (358)
                      |+ +|.++..|+++|.+....+++++|++.++++.|+|++.++++++.+.+.||+++.+.+.+..++|.| +|+++.+.|
T Consensus       164 g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~K  243 (297)
T 4gbj_A          164 GDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLK  243 (297)
T ss_dssp             CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHH
Confidence            95 8999999999999999999999999999999999999999999999999999999999999999986 899999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       309 d~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      |++++.+++++.|+|+|+.+++.++++++.++|+++.|++++++.+++
T Consensus       244 Dl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~  291 (297)
T 4gbj_A          244 DINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASD  291 (297)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-45  Score=339.72  Aligned_cols=291  Identities=57%  Similarity=0.893  Sum_probs=276.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ...+|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|.+..++.++++
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~   97 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFD   97 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHS
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhC
Confidence            45668999999999999999999999999999999999999888888888899999999999999999988899999876


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~  226 (358)
                      ++++.+.++++++|||+++..+...+.+.+.+.+.+++|+++|+++.+.....+++.++++++++.++.++++++.+|.+
T Consensus        98 ~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~  177 (310)
T 3doj_A           98 KGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKR  177 (310)
T ss_dssp             TTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEE
T ss_pred             chhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            67788889999999999999999999999999999999999999999888778888889999999999999999999999


Q ss_pred             eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhH
Q 018303          227 RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ  306 (358)
Q Consensus       227 ~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  306 (358)
                      ++++++.|.+++.|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.+++++++.+.+..++|.++|.+..+
T Consensus       178 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~  257 (310)
T 3doj_A          178 SFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQ  257 (310)
T ss_dssp             EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHH
T ss_pred             EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          307 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       307 ~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      .||++.+.+++++.|+++|+++++.++++++.++|+++.|++++++++++.
T Consensus       258 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  308 (310)
T 3doj_A          258 QKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS  308 (310)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=100.00  E-value=2e-44  Score=333.36  Aligned_cols=289  Identities=31%  Similarity=0.513  Sum_probs=272.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ....|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|.+..++.++++
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            34568999999999999999999999999999999999988888888888899999999999999999988899999832


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~  226 (358)
                      . ++.+.++++++|||++++.+.+.+.+.+.+.+.++.++++|+++++.....+++.++++|+++.++.++++++.+ .+
T Consensus       108 ~-~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~  185 (320)
T 4dll_A          108 Q-GVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GR  185 (320)
T ss_dssp             T-CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EE
T ss_pred             h-hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CC
Confidence            2 778889999999999999999999999999999999999999998877778888899999999999999999999 89


Q ss_pred             eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhH
Q 018303          227 RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ  306 (358)
Q Consensus       227 ~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  306 (358)
                      ++++++.|.+++.|+++|.+....+++++|++.++++.|++++++.+++..+.+.||.++.+.+.++.++|.++|.+..+
T Consensus       186 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~  265 (320)
T 4dll_A          186 ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQ  265 (320)
T ss_dssp             EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHH
T ss_pred             EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHH
Confidence            99999999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          307 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       307 ~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      .||++++.+++++.|+++|+++++.++++++.++|+++.|++++++++++.
T Consensus       266 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  316 (320)
T 4dll_A          266 LKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR  316 (320)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=100.00  E-value=5.1e-44  Score=326.07  Aligned_cols=285  Identities=53%  Similarity=0.895  Sum_probs=271.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      ++|+|||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|.+..++.++++.+++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            58999999999999999999999999999999999998888888888999999999999999999888999998766778


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.+++++++||++++.+...+.+.+.+.+.+++|+++|+++.+.....+.+.++++++++.++.++++++.+|.+++++
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL  161 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence            88899999999999999999999999998899999999999998877788888899999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      ++.|.+.+.|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.||+++++.+.+..++|.++|.+..+.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pdu_A          162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      +.+.+++++.|+++|+.+++.++++++.++|++++|+++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  286 (287)
T 3pdu_A          242 RLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999886

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=100.00  E-value=6.8e-44  Score=325.26  Aligned_cols=285  Identities=55%  Similarity=0.902  Sum_probs=271.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|+|||+|.||..+|+.|...|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|.+..++.++++++++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            68999999999999999999999999999999999998888899888999999999999999999888999998766778


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.+++++++||+++..+.+.+.+.+.+.+.++.|+++|+++++.....+++.++++++++.++.++++++.+|.+++++
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL  161 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence            88899999999999999999999999999999999999999998877778888899999999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      ++.+.+.+.|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.||+++++.+.+..++|.++|.+..+.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pef_A          162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      +++.++++++|+++|+++++.++++++.++|+++.|+++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~  286 (287)
T 3pef_A          242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence            999999999999999999999999999999999999999998875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=6.3e-44  Score=327.85  Aligned_cols=289  Identities=25%  Similarity=0.405  Sum_probs=268.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ..|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|... ..++.++++++|+|++|+|.+..++.++++.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            347999999999999999999999999999999999988888888776 7899999999999999999888899998766


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCe
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~  227 (358)
                      +++.+.+++++++||+++..+...+.+.+.+.+.++.|+++|+++++.....+.+.++++++++.++.++++|+.+|+++
T Consensus        86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~  165 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNV  165 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCE
Confidence            77888899999999999999999999999998889999999999998888888888999999999999999999999999


Q ss_pred             EEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhH
Q 018303          228 FYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ  306 (358)
Q Consensus       228 ~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  306 (358)
                      +++++ +|.+.+.|+++|.+.+..+++++|++.++++.|++++++.+++..+.+.||.++++.+.+..++|.++|.+..+
T Consensus       166 ~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  245 (303)
T 3g0o_A          166 YRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIF  245 (303)
T ss_dssp             EEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHH
T ss_pred             EECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHH
Confidence            99998 99999999999999999999999999999999999999999999998899999998899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          307 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       307 ~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      .||++.++++++++|+++|+.+++.++++++.++|.++.|+++++++++++
T Consensus       246 ~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  296 (303)
T 3g0o_A          246 VKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE  296 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=100.00  E-value=4.6e-41  Score=308.95  Aligned_cols=283  Identities=19%  Similarity=0.269  Sum_probs=256.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ...++|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+....++.++++++|+|++++|.+..++.++. .
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~   85 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-M   85 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-S
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-c
Confidence            445799999999999999999999999999999999988888887888888999999999999999998888999882 1


Q ss_pred             ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCe
Q 018303          148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~  227 (358)
                      ..+ ..+++|+++||+++..+...+.+.+.+.+.++.|+++|+++.++....+...++++|+++.+++++++|+.+|.++
T Consensus        86 ~~l-~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~  164 (306)
T 3l6d_A           86 PGV-ARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHT  164 (306)
T ss_dssp             TTH-HHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEE
T ss_pred             cch-hhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCE
Confidence            133 4568999999999999999999999999999999999999987766666678889999999999999999998899


Q ss_pred             EEe--CC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--ccchhhhccccccccCCCCCC-C
Q 018303          228 FYL--GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA--ISAPMYSLKGPSMIESLYPTA-F  301 (358)
Q Consensus       228 ~~~--g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~-~  301 (358)
                      +++  |+ +|.+...|    .+.+..+++++|++.++++.|+|++.+.+++..+.  +.+|+++.+.+.+..++|.++ |
T Consensus       165 ~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  240 (306)
T 3l6d_A          165 VFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQA  240 (306)
T ss_dssp             EECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSS
T ss_pred             EEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcc
Confidence            999  87 89999998    45566788999999999999999999999999875  688999988999999999875 6


Q ss_pred             chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          302 PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       302 ~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++..+.||++++++.+++.|+++|+.+++.++++++.++|+++.|++++++++++
T Consensus       241 ~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~  295 (306)
T 3l6d_A          241 RLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAR  295 (306)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC-
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999998876

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=100.00  E-value=1.3e-39  Score=298.04  Aligned_cols=268  Identities=27%  Similarity=0.360  Sum_probs=250.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      .++|||||+|.||..+|+.|++.|++|.+|||++++.+.+.+.|+....+++++++ +|+|++|+|.+..++.++   ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~   90 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GE   90 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HH
Confidence            46899999999999999999999999999999999999998889988899999999 999999999888999998   88


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +.+.+++++++||+++..+...+.+.+.+.+.+++|+++|+++++.....+.+.++++++++.+++++++++.+|.++++
T Consensus        91 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  170 (296)
T 3qha_A           91 LAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIH  170 (296)
T ss_dssp             HHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEE
Confidence            88889999999999999999999999999988999999999999888788888899999999999999999999999999


Q ss_pred             eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhccccchhhhccccccccCCCCCCCch
Q 018303          230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL------VEVVSQGAISAPMYSLKGPSMIESLYPTAFPL  303 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  303 (358)
                      +++.|.+++.|+++|.+.+..+++++|++.++++.|++++++      .+++..+.+.|+..+  .+.+..+ |.++|.+
T Consensus       171 ~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~  247 (296)
T 3qha_A          171 AGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQP  247 (296)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCch
Confidence            999999999999999999999999999999999999999999      999998887776554  7788877 8899998


Q ss_pred             -----hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCC
Q 018303          304 -----KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSD  344 (358)
Q Consensus       304 -----~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~  344 (358)
                           +.+.||++++.++++++|+++|+++++.+++..+.++|+++
T Consensus       248 ~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~  293 (296)
T 3qha_A          248 FLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKE  293 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC--
T ss_pred             hhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCccc
Confidence                 99999999999999999999999999999999999998744

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=100.00  E-value=1.5e-38  Score=291.62  Aligned_cols=286  Identities=31%  Similarity=0.542  Sum_probs=260.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++++.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            68999999999999999999999999999999988888887788888899999999999999999888888888433456


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.++++++||+++++.+.+.+.+.+.+.+.++.++++|+++.++....+...++++++++..+.++++|+.+|.+++++
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  165 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  165 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            67789999999999999988888999998888999999988776655556667778889999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      ++.+.+.+.|+++|.+...++.++.|++.++++.|++++++.+++..+...++.+..+.++++++++.++++++.+.||+
T Consensus       166 ~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  245 (299)
T 1vpd_A          166 GDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  245 (299)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777777677888888888899999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +.++++++++|+++|+++++.++++++.+.|+++.|++++++.+++
T Consensus       246 ~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  291 (299)
T 1vpd_A          246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK  291 (299)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=100.00  E-value=7.2e-38  Score=287.34  Aligned_cols=287  Identities=30%  Similarity=0.521  Sum_probs=258.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      .|+|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.|+....+++++++++|+|++++|.+.+++.++.+.++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            36999999999999999999999999999999998888777778888889999999999999999988889998832136


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +.+.++++++||+++++.+.+.+.+.+.+.+.++.++++|+.+++.....+.+.++++++++.++.++++|+.+|.++++
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  163 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYH  163 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEE
Confidence            77778999999999999988888899988888889999888776544444666677888999999999999999999999


Q ss_pred             eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-ccccCCCCCCCchhhHHH
Q 018303          230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQK  308 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~k  308 (358)
                      +++.+.+.+.|++.|.+...+..++.|++.++++.|++++++.+++..+...++.+....+ +++.+++.++++++.+.|
T Consensus       164 ~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~k  243 (301)
T 3cky_A          164 VGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHK  243 (301)
T ss_dssp             EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHH
Confidence            9999999999999999999999999999999999999999999999988777887777778 888889989999999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          309 DLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       309 d~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      |++.++++++++|+++|+++++.++++++.+.|.++.|++++++.+++
T Consensus       244 d~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  291 (301)
T 3cky_A          244 DLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ  291 (301)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=1.2e-37  Score=285.14  Aligned_cols=285  Identities=33%  Similarity=0.550  Sum_probs=256.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|+|||+|.||+.+++.|...|++|.+|| ++++.+.+.+.|+....+++++++++|+|++|+|.+.+++.++.+..++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            699999999999999999999999999999 9888888877788778899999999999999999888889988211267


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.++++++||+++++.+.+.+.+.+.+.+.+++++++|+.+++.....+.+.++++++++..+.++++|+.+|.+++++
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  162 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV  162 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence            77889999999999999888888999888888889988888765444456666778889999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL  310 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  310 (358)
                      ++.+.+.+.|++.|.+...+..++.|+..++++.|++++++.+.+..+...++.+....+.+..+++.++++++.+.||+
T Consensus       163 ~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~  242 (295)
T 1yb4_A          163 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL  242 (295)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777776666778888889999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +.+++.++++|+++|+++++.++++++.+.|.++.|++++++.+++
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~  288 (295)
T 1yb4_A          243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL  288 (295)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=100.00  E-value=2.9e-37  Score=282.64  Aligned_cols=287  Identities=29%  Similarity=0.484  Sum_probs=250.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|+|||+|.||+.+++.|.+.|++|.+|||++++.+.+.+.|+....+++++++++|+|++|+|++.+++.++...+.+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            47999999999999999999999999999999988888877788888899999999999999999888999988211225


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      ++.++++++||++++..+.+.+.+.+.+.+.+..++++|+.+++.....+...++.+++++..+.++++|+.+|.+++++
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~  160 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC  160 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence            56788999999988888888888888787778889998887765444456677788889999999999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccc--c-----ccccCCCCCCCch
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG--P-----SMIESLYPTAFPL  303 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~~~~~~~~~~~~  303 (358)
                      +..|.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+.+.++++....  +     ++..+++.+++.+
T Consensus       161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~  240 (296)
T 2gf2_A          161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT  240 (296)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence            99999999999999998999999999999999999999999999998777777665432  2     2344577888999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          304 KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       304 ~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      +.+.||++.++++++++|+++|++++++++++++.++|+++.|++++++++++.
T Consensus       241 ~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~  294 (296)
T 2gf2_A          241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=285.17  Aligned_cols=286  Identities=46%  Similarity=0.770  Sum_probs=256.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      .++|+|||+|.||+.+++.|...|++|.+|||++++.+.+.+.|+....++.++++++|+|++|+|.+..++.++.....
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            47899999999999999999999999999999999888887778877788999999999999999988889988822113


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +++.++++++||+++++.+...+.+.+.+...+..++++|+++.+.....+.+.++++++++..+.++++|+.+|.++++
T Consensus       110 ~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  189 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF  189 (316)
T ss_dssp             GGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEE
Confidence            45778999999999999988888898888777889999998887666666777777788889999999999999999999


Q ss_pred             eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHH
Q 018303          230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD  309 (358)
Q Consensus       230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  309 (358)
                      +++.+.+.+.|++.|.+.+....++.|++.++++.|++++++.+++..+...++.+....+++..+++.++++++.+.||
T Consensus       190 ~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd  269 (316)
T 2uyy_A          190 LGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKD  269 (316)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887777777766778888889899999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK  355 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~  355 (358)
                      ++.+++++++.|+++|+.+++.++++++.+.|.++.|++++++.++
T Consensus       270 ~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~  315 (316)
T 2uyy_A          270 LRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI  315 (316)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=100.00  E-value=2e-37  Score=282.68  Aligned_cols=280  Identities=27%  Similarity=0.418  Sum_probs=251.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |+|+|||+|.||..+++.|.. |++|.+|||++++.+.+.+.|+...+ +.++++++|+|++|+|.+..++.++   +++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l   76 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL   76 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence            589999999999999999999 99999999999888777666666555 7788889999999998777788888   777


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      .+.+++++++|+++++.+.+.+.+.+.+.+.++.++++|+.+++.....+.+.++.+++++..+.++++| .+|.+++++
T Consensus        77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~  155 (289)
T 2cvz_A           77 YPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHV  155 (289)
T ss_dssp             TTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEE
T ss_pred             HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEc
Confidence            7888999999999999998888999998887888998888766654555666677788999999999999 999988999


Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-ccccCCCCCCCchhhHHHH
Q 018303          231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD  309 (358)
Q Consensus       231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  309 (358)
                      ++.+.+.+.|++.|.+...+..++.|+..++++.|++++++.+++..+...++++..+.+ +++.+++.++++++.+.||
T Consensus       156 ~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd  235 (289)
T 2cvz_A          156 GPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKD  235 (289)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHH
Confidence            999999999999999999999999999999999999999999999988777777776667 7888889899999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++.++++++++|+++|+.+++.++++++.+.|.++.|++++++.+++
T Consensus       236 ~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~  282 (289)
T 2cvz_A          236 LGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER  282 (289)
T ss_dssp             HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=100.00  E-value=2.6e-37  Score=284.60  Aligned_cols=285  Identities=20%  Similarity=0.250  Sum_probs=231.7

Q ss_pred             ccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC--ccchhhHHh
Q 018303           35 FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT--KSKCDPLIS  111 (358)
Q Consensus        35 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~--~~~~~~~~~  111 (358)
                      .+..|++.|+.+......             .....|+|||||+|.||..+|+.|.+.|+ +|.+|||+  +++.+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~   68 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY-------------FQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE   68 (312)
T ss_dssp             ------------------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH
T ss_pred             CcccccccccccCccccc-------------ccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH
Confidence            456778888876544322             13456899999999999999999999999 99999997  466777777


Q ss_pred             CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCC
Q 018303          112 LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAP  189 (358)
Q Consensus       112 ~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~  189 (358)
                      .|+....++.+++++||+||+|+|.+. ...++   +++.+.++++++|||+++..+.....+.+.+.+.  +++|+++|
T Consensus        69 ~g~~~~~~~~e~~~~aDvVi~~vp~~~-~~~~~---~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~p  144 (312)
T 3qsg_A           69 LGVSCKASVAEVAGECDVIFSLVTAQA-ALEVA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVA  144 (312)
T ss_dssp             TTCEECSCHHHHHHHCSEEEECSCTTT-HHHHH---HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEeCCHHHHHhcCCEEEEecCchh-HHHHH---HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence            788888899999999999999998554 44566   7788889999999999999999999999999888  89999999


Q ss_pred             CCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018303          190 VSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDP  268 (358)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~  268 (358)
                      ++++++. ..+.+.++++|+++  +.++++|+.+|.+++++++ +|.+++.|+++|.+....+++++|++.++++.|+++
T Consensus       145 v~g~~~~-~~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~  221 (312)
T 3qsg_A          145 VMSAVKP-HGHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD  221 (312)
T ss_dssp             ECSCSTT-TGGGSEEEEESTTH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             ccCCchh-hcCCEEEEecCChH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9986554 46677888888876  8999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCC
Q 018303          269 NVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSD  344 (358)
Q Consensus       269 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~  344 (358)
                       ++.+.+..+. .++.++.+.+.+..++|.++|.+   .||++.+++++++.|+++|+.+++.++++++.+.|..+
T Consensus       222 -~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~  292 (312)
T 3qsg_A          222 -RVLASLDASF-PEHHLRDLALYLVERNLEHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL  292 (312)
T ss_dssp             -HHHHHHHHHS-GGGTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHhcC-CchhHHHhhhHhhcCCCCcccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence             5667777765 35666777788888888877754   79999999999999999999999999999999987544

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.7e-37  Score=283.34  Aligned_cols=273  Identities=21%  Similarity=0.306  Sum_probs=231.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCc-------cchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTK-------SKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~-------~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      .|+|||||+|.||..+|+.|.+.| ++|++|||++       +..+.+.+.|+  .. ++.+++++||+||+|+|.+. .
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~-~  100 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAA-T  100 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGG-H
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHH-H
Confidence            379999999999999999999999 9999999997       33444445566  56 78899999999999998554 4


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL  220 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll  220 (358)
                      ...+   .++.+.++++++|||+++..+.+.+.+.+.+.+.++.|+++|+++++ ....+.+.++++|+++  +.++++|
T Consensus       101 ~~~~---~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~--~~~~~ll  174 (317)
T 4ezb_A          101 KAVA---ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA--VEVAERL  174 (317)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH--HHHHHHH
T ss_pred             HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH--HHHHHHH
Confidence            4455   67778899999999999999999999999999889999999999854 4456677788888776  8999999


Q ss_pred             HHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhccccccccCCCC
Q 018303          221 DIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYP  298 (358)
Q Consensus       221 ~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~  298 (358)
                      +.+|.+++++++ +|.+++.|+++|.+....+++++|++.++++.|++++. .+.+..+. +.++  ..+.+.+..++|.
T Consensus       175 ~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~-~~~l~~~~~~~~~--~~~~~~~~~~~~~  251 (317)
T 4ezb_A          175 NALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERI-LDSVQETFPGLDW--RDVADYYLSRTFE  251 (317)
T ss_dssp             HTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCH--HHHHHHHHHHHHH
T ss_pred             HHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHhcCccccH--HHhhhhhhcCCCC
Confidence            999999999998 99999999999999999999999999999999999964 45555443 2232  4456677777777


Q ss_pred             CCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHH----HHHHHHCCCC-CccHHHHHHHHHhC
Q 018303          299 TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANEL----YKVAKSHGLS-DEDFSAVIEALKAK  357 (358)
Q Consensus       299 ~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~----~~~a~~~g~~-~~d~~~~~~~~~~~  357 (358)
                      ++|.   +.||++.+.+++++.|+++|+.+++.++    ++.+.+.|.+ ++||+++++.++++
T Consensus       252 ~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~  312 (317)
T 4ezb_A          252 HGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR  312 (317)
T ss_dssp             HHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHH
T ss_pred             CCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhh
Confidence            7665   4899999999999999999999999999    6777778886 89999999998763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=100.00  E-value=7.7e-34  Score=264.87  Aligned_cols=278  Identities=21%  Similarity=0.307  Sum_probs=237.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcC---CEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASC---DVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a---Divi~~vp~~~~~~~~  143 (358)
                      .+.+|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+.++.++++++   |+|++++|.+ .++.+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~v   97 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSM   97 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHH
Confidence            3456899999999999999999999999999999999998888888888888999999999   9999999866 99999


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHh
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM  223 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~  223 (358)
                      +   +++.+.++++++|||++++.+.+...+.+.+.++++.|+++|+++++.....++ .++++|+++.++.++++|+.+
T Consensus        98 l---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~l  173 (358)
T 4e21_A           98 L---QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTL  173 (358)
T ss_dssp             H---HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHH
T ss_pred             H---HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHh
Confidence            9   788889999999999999999999999999999999999999999998888887 788999999999999999999


Q ss_pred             c--------------------CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------------
Q 018303          224 G--------------------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-------------------  264 (358)
Q Consensus       224 g--------------------~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-------------------  264 (358)
                      |                    .+++++|+.|+++..|+++|.+....+.+++|++.++++.                   
T Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~  253 (358)
T 4e21_A          174 APGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNP  253 (358)
T ss_dssp             SCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CG
T ss_pred             ccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence            9                    5789999999999999999999999999999999999998                   


Q ss_pred             -----CCCHHHHHHHHhhcc-ccchhhhccccccccCCCCCCC-chhhHHHH---HHHHHHHHHhcCCCchHHHHHHHHH
Q 018303          265 -----GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF-PLKHQQKD---LRLALGLAESVSQSTPIAAAANELY  334 (358)
Q Consensus       265 -----G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~gi~~p~~~a~~~~~  334 (358)
                           |++.+++.+.++.+. ..||+++.....+.. +  |.+ .+....+|   .++++..+.+.|+|+|++.++  ++
T Consensus       254 ~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~-~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~  328 (358)
T 4e21_A          254 DFYRYDLDLADITEVWRRGSVISSWLLDLSATALLD-S--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LY  328 (358)
T ss_dssp             GGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHH-C--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HH
T ss_pred             hhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhh-C--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HH
Confidence                 899999999999886 689999876544433 2  211 12222222   478999999999999999864  55


Q ss_pred             HHHHHCCCCCccHH-HHHHHHHh
Q 018303          335 KVAKSHGLSDEDFS-AVIEALKA  356 (358)
Q Consensus       335 ~~a~~~g~~~~d~~-~~~~~~~~  356 (358)
                      .+...  .+...++ .++..+|+
T Consensus       329 ~~~~s--~~~~~~~~~l~~a~r~  349 (358)
T 4e21_A          329 ERFSS--RGEDDFANRLLSAMRY  349 (358)
T ss_dssp             HHHHH--TTTTHHHHHHHHHHC-
T ss_pred             HHHHH--CCCcccHHHHHHHHHH
Confidence            55555  3555654 58888765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=100.00  E-value=5.6e-33  Score=267.21  Aligned_cols=264  Identities=17%  Similarity=0.203  Sum_probs=227.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC-----CccCCCHHHHhh---cCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----AKYQPSPDEVAA---SCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~---~aDivi~~vp~~~~~~  141 (358)
                      +|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.+     +..+.+++|+++   ++|+|+++||.+..++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            46899999999999999999999999999999999888877642     234678999987   4999999999878999


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHH
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD  221 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~  221 (358)
                      .++   +++.+.+++|++|||++++.+.+...+.+.+.+.+++|+++|+++++.....++ .++++|++++++.++++|+
T Consensus        84 ~vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~  159 (484)
T 4gwg_A           84 DFI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQ  159 (484)
T ss_dssp             HHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHH
T ss_pred             HHH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHH
Confidence            999   888899999999999999999999999999999999999999999988777787 7889999999999999999


Q ss_pred             HhcCCe-------EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhccccchhhhcccc
Q 018303          222 IMGKSR-------FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVV---SQGAISAPMYSLKGP  290 (358)
Q Consensus       222 ~~g~~~-------~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~---~~~~~~s~~~~~~~~  290 (358)
                      .++.++       +++|+.|+++.+|+++|.+.+..+++++|++.++++ .|++++++.+++   +.+.+.||+++.+.+
T Consensus       160 ~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~  239 (484)
T 4gwg_A          160 GIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITAN  239 (484)
T ss_dssp             HHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred             HhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence            999877       889999999999999999999999999999999999 999999998886   567788999998888


Q ss_pred             ccccCCCCCCCchhhHH-----HHH-HHHHHHHHhcCCCchH-HHHHHHHHHHH
Q 018303          291 SMIESLYPTAFPLKHQQ-----KDL-RLALGLAESVSQSTPI-AAAANELYKVA  337 (358)
Q Consensus       291 ~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~gi~~p~-~~a~~~~~~~a  337 (358)
                      .+..+|+.+++.++.+.     |+. .+.++.+.++|+|+|+ .+++...+.++
T Consensus       240 ~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~  293 (484)
T 4gwg_A          240 ILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  293 (484)
T ss_dssp             HHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence            88777765444455432     222 4667788899999995 44555555443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-32  Score=263.09  Aligned_cols=256  Identities=16%  Similarity=0.202  Sum_probs=229.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCccCCCHHHHhhc---CCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAAS---CDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~  142 (358)
                      .+|||||+|.||+.+|+.|++.|++|.+|||++++.+.+.+     .|+..+.++.++++.   +|+|+++||.+..++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   90 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA   90 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence            48999999999999999999999999999999999888876     467778899999887   9999999997789999


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                      ++   +++.+.+++|++|||++++.+.+...+.+.+.+.+++++++|+++++.....++ .++++++++.++.++++|+.
T Consensus        91 vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~  166 (497)
T 2p4q_A           91 LI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQS  166 (497)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHH
T ss_pred             HH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHH
Confidence            99   788888999999999999999988889898988899999999999887767777 67788899999999999999


Q ss_pred             hcCC------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhcccccc
Q 018303          223 MGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSM  292 (358)
Q Consensus       223 ~g~~------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~~~~~s~~~~~~~~~~  292 (358)
                      +|.+      +.++|+.|.+.+.|++.|.+.+..+++++|++.++++ .|++++++.+++.   .+.+.|++++.+.+.+
T Consensus       167 ~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l  246 (497)
T 2p4q_A          167 ISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDIL  246 (497)
T ss_dssp             HSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHH
T ss_pred             hcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHH
Confidence            9987      7888889999999999999999999999999999999 5999999998884   5667888888877777


Q ss_pred             ccCCCCCCCchhhHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018303          293 IESLYPTAFPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gi~~p~~~a~  330 (358)
                      ..+++.+++.++.+.     ||++ ++.+.++++|+++|+++.+
T Consensus       247 ~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a  290 (497)
T 2p4q_A          247 KFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA  290 (497)
T ss_dssp             TCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence            888886667888776     7776 7899999999999998875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.98  E-value=9.7e-32  Score=260.21  Aligned_cols=260  Identities=20%  Similarity=0.244  Sum_probs=226.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHHhhc---CCEEEEeeCChhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPES  139 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivi~~vp~~~~  139 (358)
                      .+..++|||||+|.||+.+|+.|++.|++|.+|||++++.+.+.+.    |+..+.++++++++   +|+|+++||.+..
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            3556789999999999999999999999999999999988877664    67778899999887   9999999987678


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHH
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL  219 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l  219 (358)
                      ++.++   +++.+.+++|++|||++++.+.+...+.+.+.+.++.++++|+.+++.....++ .++++++++.++.++++
T Consensus        92 v~~vl---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l  167 (480)
T 2zyd_A           92 TDAAI---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPI  167 (480)
T ss_dssp             HHHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHH
T ss_pred             HHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHH
Confidence            99999   788888999999999999999988889898988899999999998887666677 67888999999999999


Q ss_pred             HHHhcCC-------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhcc
Q 018303          220 LDIMGKS-------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLK  288 (358)
Q Consensus       220 l~~~g~~-------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~~~~~s~~~~~~  288 (358)
                      |+.+|.+       +.++|+.|.+.+.|++.|.+.+.++++++|++.++++ .|++++++.+++.   .+...|++++.+
T Consensus       168 l~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~  247 (480)
T 2zyd_A          168 LTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT  247 (480)
T ss_dssp             HHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHH
T ss_pred             HHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHH
Confidence            9999987       7888999999999999999999999999999999999 6999999998884   466778888877


Q ss_pred             ccccccCCCCCCCchhhHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018303          289 GPSMIESLYPTAFPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gi~~p~~~a~  330 (358)
                      .+.+..+++.+++.++.+.     |+.+ ++.+.++++|+++|+++++
T Consensus       248 ~~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a  295 (480)
T 2zyd_A          248 KDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES  295 (480)
T ss_dssp             HHHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence            7766677776667777654     4444 7889999999999999886

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.97  E-value=2.9e-30  Score=250.71  Aligned_cols=263  Identities=16%  Similarity=0.183  Sum_probs=226.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCccCCCHHHHhh---cCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAA---SCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~  142 (358)
                      |+|||||+|.||+.+|..|+..|++|.+|||++++.+.+.+     .++..+.+++++++   ++|+|+++||.+..++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            58999999999999999999999999999999998888876     56777889999875   89999999987678999


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                      ++   +++.+.+++|++||+++++.+.+...+.+.+.+.++.++++|+++++.....++ .++.+++++..+.++++|+.
T Consensus        83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~  158 (482)
T 2pgd_A           83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG  158 (482)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred             HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHH
Confidence            99   778888999999999999999888888888888889999999988876666666 56778889999999999999


Q ss_pred             hcCCe-------EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hccccchhhhccccc
Q 018303          223 MGKSR-------FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVS---QGAISAPMYSLKGPS  291 (358)
Q Consensus       223 ~g~~~-------~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~---~~~~~s~~~~~~~~~  291 (358)
                      +|.++       .++++.|.+++.|++.|.+.+..+++++|++.++++. |++++++.+++.   .+...|++.+.+.+.
T Consensus       159 ~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~  238 (482)
T 2pgd_A          159 IAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASI  238 (482)
T ss_dssp             HSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred             hhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence            99876       6778899999999999999999999999999999999 999999999886   445667777776666


Q ss_pred             cccCCCCCCCchhhH------HHHHHHHHHHHHhcCCCchHHH-HHHHHHHHH
Q 018303          292 MIESLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAA-AANELYKVA  337 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~gi~~p~~~-a~~~~~~~a  337 (358)
                      +..+++.+++.++.+      .++..++++.++++|+|+|+++ ++.+.+...
T Consensus       239 l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~  291 (482)
T 2pgd_A          239 LKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  291 (482)
T ss_dssp             HHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence            677777666766665      4666789999999999999995 566666444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.97  E-value=8.8e-30  Score=246.79  Aligned_cols=257  Identities=19%  Similarity=0.284  Sum_probs=222.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHHhhc---CCEEEEeeCChhhHhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVAAS---CDVTFAMLADPESAMD  142 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~  142 (358)
                      .++|||||+|.||+.+|+.|.+.|++|.+|||++++.+.+.+.    ++..+.+++++++.   +|+|++++|.+..++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            3689999999999999999999999999999999888877654    67777899999886   9999999987778999


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                      ++   +++.+.+++|++||+++++.+.+...+.+.+.+.++.++++|+.+++.....++ .++.+++++..+.++++|+.
T Consensus        85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~  160 (474)
T 2iz1_A           85 TI---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQ  160 (474)
T ss_dssp             HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHH
T ss_pred             HH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHH
Confidence            99   788888999999999999998888888888887889999999988776656666 46678899999999999999


Q ss_pred             hcCC--------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhcccc
Q 018303          223 MGKS--------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKGP  290 (358)
Q Consensus       223 ~g~~--------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~---~~~~s~~~~~~~~  290 (358)
                      +|.+        +.++++.|.+.+.|++.|.+.+..++++.|++.++++ .|++++++.+++..   +...|++++.+.+
T Consensus       161 ~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~  240 (474)
T 2iz1_A          161 IAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE  240 (474)
T ss_dssp             HSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH
T ss_pred             HhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhh
Confidence            9987        5788899999999999999999999999999999999 79999999988853   4566777776666


Q ss_pred             ccccCCCCCC-CchhhHH-----HHHH-HHHHHHHhcCCCchHHHHH
Q 018303          291 SMIESLYPTA-FPLKHQQ-----KDLR-LALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       291 ~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~gi~~p~~~a~  330 (358)
                      .+..+++.+| +.++.+.     |+++ ++.+.++++|+++|+++.+
T Consensus       241 ~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a  287 (474)
T 2iz1_A          241 VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES  287 (474)
T ss_dssp             HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence            6666788666 6777554     6666 7899999999999999886

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.97  E-value=9.2e-30  Score=246.60  Aligned_cols=255  Identities=19%  Similarity=0.270  Sum_probs=218.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-C-------CccCCCHHHHhhc---CCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAAS---CDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g-------~~~~~~~~~~~~~---aDivi~~vp~~~~  139 (358)
                      |+|||||+|.||+.+|..|+..|++|.+|||++++.+.+.+. |       +..+.+++++++.   +|+|++++|.+..
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            589999999999999999999999999999999888777654 5       5567789998874   9999999987678


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHH
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL  219 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l  219 (358)
                      ++.++   +++.+.++++++||+++++.+.+...+.+.+.+.++.++++|+.+++.....++ .++.+++++..+.++++
T Consensus        82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l  157 (478)
T 1pgj_A           82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI  157 (478)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred             HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHH
Confidence            99998   778888999999999999999888888888888889999999988776556666 56778899999999999


Q ss_pred             HHHhcCC-------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hccccchhhhcc
Q 018303          220 LDIMGKS-------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS----QGAISAPMYSLK  288 (358)
Q Consensus       220 l~~~g~~-------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~----~~~~~s~~~~~~  288 (358)
                      |+.+|.+       +.++++.|.+++.|++.|.+.+..+++++|++.++++.|++++++.+++.    .+.+.|+..+.+
T Consensus       158 l~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~  237 (478)
T 1pgj_A          158 VEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDIS  237 (478)
T ss_dssp             HHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred             HHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhh
Confidence            9999987       67889999999999999999999999999999999999999999999886    455667777766


Q ss_pred             ccccccCCCCCC-CchhhHH-----HHH-HHHHHHHHhcCCCchHHHHH
Q 018303          289 GPSMIESLYPTA-FPLKHQQ-----KDL-RLALGLAESVSQSTPIAAAA  330 (358)
Q Consensus       289 ~~~~~~~~~~~~-~~~~~~~-----kd~-~~~~~~a~~~gi~~p~~~a~  330 (358)
                      .+.+..+++ +| +.++.+.     |++ ++++++++++|+++|+++++
T Consensus       238 ~~~l~~~d~-~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a  285 (478)
T 1pgj_A          238 IAAARAKDK-DGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA  285 (478)
T ss_dssp             HHHHHCBCT-TSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             chhhhcCCC-CChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence            555555666 44 6666654     444 68999999999999999983

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.97  E-value=2.5e-30  Score=232.74  Aligned_cols=255  Identities=18%  Similarity=0.273  Sum_probs=204.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcC--CccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|+|||+|+||..+++.|.+.|++|++|++  +++..+.+.+.|+.  .++.++++++|+|++|+|.+...+. +   .
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~-~---~   74 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGA-A---R   74 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHH-H---H
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHH-H---H
Confidence            5899999999999999999999999999998  55556666666766  6788889999999999985555554 4   4


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeE
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF  228 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~  228 (358)
                      ++.+.+++  ++|+++++.+.+.+.+.+.+.+.+  ++++|+++.+.....+.. ++++++++  +.+++ |+.+|.+++
T Consensus        75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~  146 (264)
T 1i36_A           75 RAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIE  146 (264)
T ss_dssp             HHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEE
T ss_pred             HHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeE
Confidence            45566666  999999998888888888887665  788888887665555666 66677655  78888 999999999


Q ss_pred             EeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHH
Q 018303          229 YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ  307 (358)
Q Consensus       229 ~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  307 (358)
                      ++++ .+.+.+.|++.|.+.+.++.++.|++.++++.|++++ +.+.+..+.+.++..  ..+++..+++.++++   ..
T Consensus       147 ~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~---~~  220 (264)
T 1i36_A          147 VRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAISRLKSSCIHARR---RY  220 (264)
T ss_dssp             ECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHHHHHHHHHHTHHH---HH
T ss_pred             ECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHHHHhcCCCCcchh---hH
Confidence            9998 8999999999999999999999999999999999987 778887755434432  344566666767654   57


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCcc
Q 018303          308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED  346 (358)
Q Consensus       308 kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d  346 (358)
                      ||++.+.++++++ +++|+.+++.++++++.+.|.+.+|
T Consensus       221 ~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~  258 (264)
T 1i36_A          221 EEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA  258 (264)
T ss_dssp             HHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence            9999999999999 9999999999999999988766554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.96  E-value=4e-28  Score=231.86  Aligned_cols=257  Identities=15%  Similarity=0.119  Sum_probs=207.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  130 (358)
                      .+|+|||+|.||..+|..|++.|++|++||+++++++.+.+.                    ++.+++++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            489999999999999999999999999999999988876542                    245677898999999999


Q ss_pred             EEeeCChh----------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCc
Q 018303          131 FAMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKP  196 (358)
Q Consensus       131 i~~vp~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~  196 (358)
                      |+|||.+.          .++.++   +.+.+.++++++||+.|+..|...+.+.+.+.+.+    ..++..|.+..+-.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~  165 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGA  165 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTS
T ss_pred             EEEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccccccc
Confidence            99998664          478887   78888999999999999999999999988887753    45555665544322


Q ss_pred             CC---CCceEEEecC-CHhHHHHHHHHHHHhcCC---eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303          197 AE---DGQLIFLAAG-DKSLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  269 (358)
Q Consensus       197 ~~---~~~~~~~~~g-~~~~~~~v~~ll~~~g~~---~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  269 (358)
                      ..   ..+..+++++ +++..+.++++++.++..   ++.+++.+.++..|++.|.+.+..+++++|+..+|++.|+|++
T Consensus       166 a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~  245 (446)
T 4a7p_A          166 AIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQ  245 (446)
T ss_dssp             HHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             hhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            10   0112455665 588899999999988775   6888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          270 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      ++.+++......+       ..+.  ...+|+....+.||+.++.+.++++|+++|++++++++......
T Consensus       246 ~v~~~~~~~~rig-------~~~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~~~  306 (446)
T 4a7p_A          246 EVSRGIGMDNRIG-------GKFL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARKR  306 (446)
T ss_dssp             HHHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCC-------CccC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999998753111       1111  12346778899999999999999999999999999988776543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.96  E-value=9.6e-28  Score=230.44  Aligned_cols=254  Identities=16%  Similarity=0.167  Sum_probs=205.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+.                    ++..++++.+++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            699999999999999999999999999999999887766541                    234567889999999999


Q ss_pred             EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC--------CeEecCCCCCC
Q 018303          131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--------ASFLEAPVSGS  193 (358)
Q Consensus       131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--------~~~~~~~~~~~  193 (358)
                      |+|+|.+.         .++.++   +++.+.++++++||+.|+..+...+.+.+.+.+.+        ..++..|.+..
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~  159 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK  159 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence            99998664         788888   78888899999999999999988888887776531        33445555443


Q ss_pred             CCcCC---CCceEEEecC-CHhHHHHHHHHHHHhcC--CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018303          194 KKPAE---DGQLIFLAAG-DKSLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD  267 (358)
Q Consensus       194 ~~~~~---~~~~~~~~~g-~~~~~~~v~~ll~~~g~--~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~  267 (358)
                      +-...   ..+..+++++ +++..+.++++++.++.  .++++++.+.+++.|++.|.+.+..+++++|+..+|++.|+|
T Consensus       160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid  239 (450)
T 3gg2_A          160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGAD  239 (450)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            32210   1111345554 68899999999999876  367888988999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          268 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       268 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      ++++.+++....           ++....+.||  +....+.||+.++.+.++++|+++|++++++++.....
T Consensus       240 ~~~v~~~~~~~~-----------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~~  301 (450)
T 3gg2_A          240 VSMVRLGIGSDS-----------RIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQK  301 (450)
T ss_dssp             HHHHHHHHHTST-----------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCC-----------CCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            999999988642           2333344444  67788999999999999999999999999998876543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.95  E-value=3.8e-27  Score=226.34  Aligned_cols=261  Identities=16%  Similarity=0.088  Sum_probs=207.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CC-cEEEEcCCcc----chhhHHh---------------------CC-CccCCCH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKS----KCDPLIS---------------------LG-AKYQPSP  120 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~-~V~~~~~~~~----~~~~~~~---------------------~g-~~~~~~~  120 (358)
                      ..|+|+|||+|.||..+|..|+.. |+ +|++||++++    +++.+.+                     .+ +..+++ 
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-   95 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-   95 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence            457999999999999999999999 99 9999999998    6665543                     11 334445 


Q ss_pred             HHHhhcCCEEEEeeCChh--------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHH--hcC------Ce
Q 018303          121 DEVAASCDVTFAMLADPE--------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK--ATG------AS  184 (358)
Q Consensus       121 ~~~~~~aDivi~~vp~~~--------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~--~~~------~~  184 (358)
                      .+++++||+||+|+|.+.        ++..+....+.+.+.+++|++||+.|+..|...+.+.+.+.  ..+      +.
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~  175 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFA  175 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBE
T ss_pred             HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCcee
Confidence            678899999999998763        22222211167778899999999999999998888876432  223      46


Q ss_pred             EecCCCCCCCCcCCCC---ceEEEecCCHhHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          185 FLEAPVSGSKKPAEDG---QLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH  260 (358)
Q Consensus       185 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~v~~ll~~~-g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l  260 (358)
                      ++++|.+..+.....+   +..++.|++++..+.++++++.+ +..++++++.+.++..|+++|.+.+..+++++|+..+
T Consensus       176 v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l  255 (478)
T 3g79_A          176 LAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALY  255 (478)
T ss_dssp             EEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889988766543222   22467788999999999999999 8889999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCC-------chHHHHHH
Q 018303          261 SEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQS-------TPIAAAAN  331 (358)
Q Consensus       261 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~-------~p~~~a~~  331 (358)
                      |++.|+|++++.+.+...    |++     ++....+.||+  ....+.||+.++.+.++++|++       ++++++++
T Consensus       256 ~e~~GiD~~~v~~~~~~~----~~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~  326 (478)
T 3g79_A          256 CEAMGINVYDVRTGVDSL----KGE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR  326 (478)
T ss_dssp             HHHTTCCHHHHHHHHHTS----CCS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred             HHHcCCCHHHHHHHHCCC----chh-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence            999999999999998864    211     34445667765  4557999999999999999987       89999988


Q ss_pred             HHHHHHHH
Q 018303          332 ELYKVAKS  339 (358)
Q Consensus       332 ~~~~~a~~  339 (358)
                      ++......
T Consensus       327 ~iN~~~~~  334 (478)
T 3g79_A          327 KVNDFMPA  334 (478)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87665543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.95  E-value=2.1e-26  Score=218.12  Aligned_cols=252  Identities=16%  Similarity=0.125  Sum_probs=202.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC------------------CCccCCCHHHHhhcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCD  128 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aD  128 (358)
                      +...|+|+|||+|.||..+|..|+. |++|++||+++++++.+.+.                  ++..++++.+++++||
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aD  111 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNAD  111 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCS
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCC
Confidence            5566899999999999999999998 99999999999887766541                  3556778889999999


Q ss_pred             EEEEeeCChh----------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC
Q 018303          129 VTFAMLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE  198 (358)
Q Consensus       129 ivi~~vp~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  198 (358)
                      +||+|+|.+.          .++.++   +.+.+ +++|++||+.|+..|...+.+.+.+.+.+  +..+|++..+..+.
T Consensus       112 vViiaVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~  185 (432)
T 3pid_A          112 YVIIATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRAL  185 (432)
T ss_dssp             EEEECCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHH
T ss_pred             EEEEeCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhh
Confidence            9999999762          466666   67777 89999999999999999999998887654  44589998876654


Q ss_pred             CCce---EEEecCCHhHHHHHHHHHHH--hcC-CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          199 DGQL---IFLAAGDKSLYNTVAPLLDI--MGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       199 ~~~~---~~~~~g~~~~~~~v~~ll~~--~g~-~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      .+.+   .+++|++++..+.+.++|..  ++. ..+..++++.+++.|++.|.+.+..+++++|+..+|++.|+|.+++.
T Consensus       186 ~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~  265 (432)
T 3pid_A          186 YDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQII  265 (432)
T ss_dssp             HHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            4433   57888888888999999987  443 34677889999999999999999999999999999999999999999


Q ss_pred             HHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          273 EVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       273 ~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      +.+....           ++...-..|  |+..-.+.||......  +..|++.++++++.++.....
T Consensus       266 ~~~~~dp-----------rig~~~~~pg~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~~~  320 (432)
T 3pid_A          266 EGVCLDP-----------RIGNHYNNPSFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRTRK  320 (432)
T ss_dssp             HHHHTST-----------TTCSSSCCCCSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHccCC-----------CCCcccCCCCCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHhhH
Confidence            9988642           222211134  3455678999987754  446999999999988866554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.95  E-value=3e-26  Score=221.72  Aligned_cols=255  Identities=18%  Similarity=0.187  Sum_probs=199.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC--------------------CccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------------AKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~aDi  129 (358)
                      .|+|+|||+|.||..+|..|+..|++|++||+++++++.+.+.+                    +..++++.+++++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            37999999999999999999999999999999998887766531                    3455677788899999


Q ss_pred             EEEeeCCh---------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc---CCeEecCCCCCCCCcC
Q 018303          130 TFAMLADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT---GASFLEAPVSGSKKPA  197 (358)
Q Consensus       130 vi~~vp~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~  197 (358)
                      ||+|||.+         ..++.++   +++.+.++++++||+.|+..+...+.+.+.+.+.   +....+.++...|...
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~  164 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL  164 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence            99999865         6888888   7788889999999999988888777777766543   2100222233333333


Q ss_pred             CCCce--------EEEecCC-H----hHHHHHHHHHHHhcC--CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          198 EDGQL--------IFLAAGD-K----SLYNTVAPLLDIMGK--SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE  262 (358)
Q Consensus       198 ~~~~~--------~~~~~g~-~----~~~~~v~~ll~~~g~--~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~  262 (358)
                      ..+..        .++.+++ +    +..+.++++++.++.  .++.+++++.+++.|++.|.+....+++++|+..+|+
T Consensus       165 ~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~  244 (478)
T 2y0c_A          165 KEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLAD  244 (478)
T ss_dssp             CTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322        3445543 5    688899999998765  6888889999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCch--hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          263 KVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPL--KHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       263 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      +.|++.+++.+.+..           .+++....+.||+.+  ..+.||+..+.++++++|+++|+++++++++....
T Consensus       245 ~~Gid~~~v~~~i~~-----------~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~~  311 (478)
T 2y0c_A          245 RFGADIEAVRRGIGS-----------DPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQK  311 (478)
T ss_dssp             HTTCCHHHHHHHHHT-----------STTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred             HhCCCHHHHHHHHhc-----------CCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhH
Confidence            999999999887763           223333345555433  35799999999999999999999999999887654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.95  E-value=1.5e-26  Score=222.30  Aligned_cols=254  Identities=17%  Similarity=0.152  Sum_probs=199.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.||..+|..|+..|++|+++|+++++.+.+.+                   .| +..+++++++++++|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            58999999999999999999999999999999988777654                   22 45567888889999999


Q ss_pred             EEeeCChhh---------HhhhhcccccccccCCC---CCEEEEccCCChhH-HHHHHHHHHhc-CCeE-ecCCCCCCCC
Q 018303          131 FAMLADPES---------AMDVACGKHGAASGMGP---GKGYVDVSTVDGDT-SKLINGHIKAT-GASF-LEAPVSGSKK  195 (358)
Q Consensus       131 i~~vp~~~~---------~~~~~~~~~~~~~~l~~---~~~vi~~s~~~~~~-~~~l~~~l~~~-~~~~-~~~~~~~~~~  195 (358)
                      ++|+|.+..         ++.++   +++.+.+++   +++||++|+..+.. .+.+.+.+.+. +..+ ++.++...|.
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe  157 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcc
Confidence            999987665         77877   777777888   99999999988877 67777777663 4332 2333333333


Q ss_pred             cCCCCce--------EEEecC-CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018303          196 PAEDGQL--------IFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL  266 (358)
Q Consensus       196 ~~~~~~~--------~~~~~g-~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~  266 (358)
                      ....+..        .++.++ +++..+.++++++.++..++ .++.+.+++.|++.|.+....+++++|+..+|++.|+
T Consensus       158 ~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~-~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi  236 (436)
T 1mv8_A          158 FLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPII-RKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGV  236 (436)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEE-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEE-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333332        344554 48888999999999998554 4778889999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhccccchhhhccccccc--cCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          267 DPNVLVEVVSQGAISAPMYSLKGPSMI--ESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       267 ~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      +.+++.+.+...           +++.  ...+.|  ++....+.||+..+.++++++|+++|++++++++......
T Consensus       237 d~~~v~~~~~~~-----------~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~~~  302 (436)
T 1mv8_A          237 DGREVMDVICQD-----------HKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQ  302 (436)
T ss_dssp             CHHHHHHHHTTC-----------TTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHHHH
T ss_pred             CHHHHHHHhcCC-----------CCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHhHH
Confidence            999998887752           1222  234444  4566788999999999999999999999999888665443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.95  E-value=1.7e-26  Score=223.54  Aligned_cols=250  Identities=16%  Similarity=0.165  Sum_probs=197.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHh-------------------CCCccCCCHHHHhhcCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCD  128 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aD  128 (358)
                      .|+|+|||+|.||..+|..|++.  |++|++||+++++.+.+.+                   .++..++++.+++++||
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            37999999999999999999998  8999999999887766432                   23555678888899999


Q ss_pred             EEEEeeCChhhH--------------hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCC
Q 018303          129 VTFAMLADPESA--------------MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  194 (358)
Q Consensus       129 ivi~~vp~~~~~--------------~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  194 (358)
                      +|++|+|.+...              ..++   +++.+.++++++||++|+..+...+.+.+.+.+.+..+++.++...+
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~P  161 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNP  161 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCH
Confidence            999999866543              3344   55667789999999999999998888888887765444455555555


Q ss_pred             CcCCCCceE--------EEecC-----CHhHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          195 KPAEDGQLI--------FLAAG-----DKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH  260 (358)
Q Consensus       195 ~~~~~~~~~--------~~~~g-----~~~~~~~v~~ll~~~-g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l  260 (358)
                      .....+...        +++++     +++..+.++++++.+ +..++++++.+.+++.|++.|.+....+++++|+..+
T Consensus       162 e~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l  241 (467)
T 2q3e_A          162 EFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISAL  241 (467)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555543        55666     678889999999999 7788899999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCC--chHHHHHHHH
Q 018303          261 SEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQS--TPIAAAANEL  333 (358)
Q Consensus       261 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~--~p~~~a~~~~  333 (358)
                      |++.|++.+++.+++......           ....+.||  +....+.||+.++.+.++++|++  .++.+++.++
T Consensus       242 ~~~~Gid~~~v~~~~~~~~~~-----------~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~  307 (467)
T 2q3e_A          242 CEATGADVEEVATAIGMDQRI-----------GNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDM  307 (467)
T ss_dssp             HHHHTCCHHHHHHHHHTSTTT-----------CSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHcCCCCC-----------CccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            999999999999998865321           11122333  45567899999999999999997  5555555443

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.94  E-value=2.2e-28  Score=225.75  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=152.4

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|..+......+.            ++.+++|||||+|+|
T Consensus       119 ~V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~------------~l~gktvGIIGlG~I  184 (345)
T 4g2n_A          119 KVLHTPDVLSD--ACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGM------------GLTGRRLGIFGMGRI  184 (345)
T ss_dssp             EEECCCSCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBC------------CCTTCEEEEESCSHH
T ss_pred             EEEECCcccch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccccc------------ccCCCEEEEEEeChh
Confidence            34555788888  8999999999999999999999999999985432222222            788999999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|++++.+|++|++|||++...+..  .+.....++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       185 G~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li--~~~~l~~mk~gailI  260 (345)
T 4g2n_A          185 GRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFL--DHDRIAKIPEGAVVI  260 (345)
T ss_dssp             HHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHSCTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHh--CHHHHhhCCCCcEEE
Confidence            9999999999999999999987554322  266666799999999999999999999999999  788899999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      |++|+.++++++|.++|+++.+.....+++..+|
T Consensus       261 N~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          261 NISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             ECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            9999999999999999999988877788887776

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.94  E-value=1.1e-25  Score=218.40  Aligned_cols=254  Identities=16%  Similarity=0.137  Sum_probs=200.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhC-------------------CCccCCCHHHHhhcCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCD  128 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD  128 (358)
                      .|+|+|||+|.||..+|..|+..  |++|++||+++++++.+.+.                   ++..++++.+++++||
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            47999999999999999999987  79999999999887766532                   2344567778889999


Q ss_pred             EEEEeeCChh--------------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh-cCC------eEec
Q 018303          129 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TGA------SFLE  187 (358)
Q Consensus       129 ivi~~vp~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~-~~~------~~~~  187 (358)
                      +||+|+|.+.              .++.++   +.+.+.++++++||+.|+..+...+.+.+.+.+ .++      .+..
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~  165 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLS  165 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEE
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEe
Confidence            9999998654              266666   677788999999999999999888888888877 442      2455


Q ss_pred             CCCCCCCCcCCC---CceEEEecCCH-----hHHHHHHHHHHHhcC-CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          188 APVSGSKKPAED---GQLIFLAAGDK-----SLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL  258 (358)
Q Consensus       188 ~~~~~~~~~~~~---~~~~~~~~g~~-----~~~~~v~~ll~~~g~-~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~  258 (358)
                      .|.+..+.....   .+..++++++.     +..+.++++++.++. .++.+++++.+++.|++.|.+....+++++|+.
T Consensus       166 ~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~  245 (481)
T 2o3j_A          166 NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSIS  245 (481)
T ss_dssp             CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554432111   11134455432     577889999999996 788889999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCC--chHHHHHHHHH
Q 018303          259 LHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQS--TPIAAAANELY  334 (358)
Q Consensus       259 ~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~--~p~~~a~~~~~  334 (358)
                      .+|++.|++++++.+.+....           ++....+.||+  ....+.||+.++.+.+++.|++  +|+++++.++.
T Consensus       246 ~la~~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N  314 (481)
T 2o3j_A          246 AVCEATGAEISEVAHAVGYDT-----------RIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININ  314 (481)
T ss_dssp             HHHHHHSCCHHHHHHHHHTST-----------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCHHHHHHHHccCC-----------CCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHH
Confidence            999999999999999988642           22233455655  5567999999999999999999  99998887665


Q ss_pred             HHH
Q 018303          335 KVA  337 (358)
Q Consensus       335 ~~a  337 (358)
                      ...
T Consensus       315 ~~~  317 (481)
T 2o3j_A          315 NWQ  317 (481)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.94  E-value=4.7e-28  Score=221.70  Aligned_cols=173  Identities=15%  Similarity=0.096  Sum_probs=148.5

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++...|+|+..  +++|++++++|++.|+++.+.+.+++|.|.....     .            ++.+++|||||+|.|
T Consensus        91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~------------~l~g~tvGIIGlG~I  151 (324)
T 3hg7_A           91 QLTNVRGIFGP--LMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPY-----Q------------GLKGRTLLILGTGSI  151 (324)
T ss_dssp             EEECCCSCCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----C------------CSTTCEEEEECCSHH
T ss_pred             EEEECCCcChH--HHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCC-----c------------ccccceEEEEEECHH
Confidence            35556788888  8999999999999999999999999999975321     1            678889999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|++++.+|++|++|||+++..+.+.  +.....++++++++||+|++|+|.+++|++++  +++.++.|++|+++|
T Consensus       152 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~gailI  227 (324)
T 3hg7_A          152 GQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLF--TASRFEHCKPGAILF  227 (324)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSB--CTTTTTCSCTTCEEE
T ss_pred             HHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHh--HHHHHhcCCCCcEEE
Confidence            99999999999999999999875443221  12234689999999999999999999999999  788899999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      |++|+.++++++|.++|+++.+.....+++..+|..
T Consensus       228 N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~  263 (324)
T 3hg7_A          228 NVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLP  263 (324)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCC
T ss_pred             ECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCC
Confidence            999999999999999999998877777788776643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.94  E-value=4.9e-28  Score=224.16  Aligned_cols=181  Identities=15%  Similarity=0.130  Sum_probs=155.7

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++...|+|+..  +++|++++++|++.|+++.+.+.+++|.|..... ...            ..++.+++|||||+|+|
T Consensus       111 ~V~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~------------~~~l~gktvGIIG~G~I  175 (351)
T 3jtm_A          111 TVAEVTGSNVV--SVAEDELMRILILMRNFVPGYNQVVKGEWNVAGI-AYR------------AYDLEGKTIGTVGAGRI  175 (351)
T ss_dssp             EEEECTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHH-HTT------------CCCSTTCEEEEECCSHH
T ss_pred             eEEECCCcCch--HHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccc-cCC------------cccccCCEEeEEEeCHH
Confidence            34556788877  8999999999999999999999999999974210 000            11688899999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|++++.+|++|++|||++...+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       176 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gailI  253 (351)
T 3jtm_A          176 GKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF--NKELIGKLKKGVLIV  253 (351)
T ss_dssp             HHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHHHSCTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhh--cHHHHhcCCCCCEEE
Confidence            999999999999999999998766666666678777899999999999999999999999999  788999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAED  199 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  199 (358)
                      |++|+.++++++|.++|+++.+.....+++..+|....
T Consensus       254 N~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~  291 (351)
T 3jtm_A          254 NNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKD  291 (351)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT
T ss_pred             ECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCC
Confidence            99999999999999999999888777788877764433

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.94  E-value=9e-25  Score=207.48  Aligned_cols=248  Identities=15%  Similarity=0.080  Sum_probs=195.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC------------------ccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA------------------KYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~------------------~~~~~~~~~~~~aDivi~  132 (358)
                      |+|+|||+|.||..+|..|++ |++|+++|+++++.+.+.+.+.                  ..++++.+.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            589999999999999999999 9999999999988887765543                  345577788899999999


Q ss_pred             eeCChh----------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC---C
Q 018303          133 MLADPE----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE---D  199 (358)
Q Consensus       133 ~vp~~~----------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~  199 (358)
                      |+|.+.          .++.++   +.+.+ ++++++||+.|+..+...+.+.+.+...  .++.+|.+..+....   .
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~  153 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL  153 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred             ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence            998663          578887   77777 8999999998999998888888777543  566777766554322   1


Q ss_pred             CceEEEecCCH-------hHHHHHHHHHHHhcCC---eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303          200 GQLIFLAAGDK-------SLYNTVAPLLDIMGKS---RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  269 (358)
Q Consensus       200 ~~~~~~~~g~~-------~~~~~v~~ll~~~g~~---~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  269 (358)
                      .+..++.|+++       +..+.+.+++...+..   ++.+++++.++|.|++.|.+....+++++|+..+|++.|+|.+
T Consensus       154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~  233 (402)
T 1dlj_A          154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSH  233 (402)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            22225566654       5566777778654332   5788889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          270 VLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      ++.+.+....           ++....+.|  |+....+.||+.++...++  |+++|+++++.++.....
T Consensus       234 ~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~~  291 (402)
T 1dlj_A          234 MIIQGISYDD-----------RIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVRK  291 (402)
T ss_dssp             HHHHHHHTST-----------TTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCC-----------CCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHhH
Confidence            9999988643           222223345  4667799999999998885  889999999988776554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.93  E-value=2.8e-27  Score=219.42  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=151.4

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+| ..  +++|++++++|++.|+++.+.+.+++|.|.........+.     .......++.+++|||||+|.||
T Consensus       101 V~n~pg~-~~--~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~-----~~~~~~~~l~g~tvGIIGlG~IG  172 (352)
T 3gg9_A          101 VLEGKGS-PV--APAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMP-----PNFGIGRVLKGQTLGIFGYGKIG  172 (352)
T ss_dssp             EECCCCC-SH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSC-----TTTTSBCCCTTCEEEEECCSHHH
T ss_pred             EEECCCC-cH--HHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccc-----cccccCccCCCCEEEEEeECHHH
Confidence            3445777 66  8999999999999999999999999999976421000000     00011127889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++++|++|++|||++. .+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       173 ~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~mk~gailIN  249 (352)
T 3gg9_A          173 QLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII--TVADLTRMKPTALFVN  249 (352)
T ss_dssp             HHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh--CHHHHhhCCCCcEEEE
Confidence            9999999999999999999853 344455678777799999999999999999999999999  7888999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.++++++|.++|+++++.....+++..+|.
T Consensus       250 ~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  283 (352)
T 3gg9_A          250 TSRAELVEENGMVTALNRGRPGMAAIDVFETEPI  283 (352)
T ss_dssp             CSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCC
T ss_pred             CCCchhhcHHHHHHHHHhCCccEEEecccCCCCC
Confidence            9999999999999999999988877788876654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.93  E-value=1.6e-27  Score=219.73  Aligned_cols=175  Identities=15%  Similarity=0.081  Sum_probs=150.7

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|..+... ..+.            ++.+++|||||+|+|
T Consensus        92 ~v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~------------~l~g~tvGIIG~G~I  156 (330)
T 4e5n_A           92 WLTFVPDLLTV--PTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPR-FYGT------------GLDNATVGFLGMGAI  156 (330)
T ss_dssp             EEECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSC-CCCC------------CSTTCEEEEECCSHH
T ss_pred             EEEeCCCCCch--HHHHHHHHHHHHHHhChHHHHHHHHhCCccccCcc-ccCC------------ccCCCEEEEEeeCHH
Confidence            34456788888  88999999999999999999999999999744321 1112            788999999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|++++.+|++|++|||++...+...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gailI  233 (330)
T 4e5n_A          157 GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV--NAELLALVRPGALLV  233 (330)
T ss_dssp             HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHh--CHHHHhhCCCCcEEE
Confidence            999999999999999999998755554445566544 89999999999999999999999999  778999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  194 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  194 (358)
                      |++|+.+++++++.++++++++.....+++..+
T Consensus       234 N~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E  266 (330)
T 4e5n_A          234 NPCRGSVVDEAAVLAALERGQLGGYAADVFEME  266 (330)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred             ECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence            999999999999999999999887777887766

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.93  E-value=2.2e-27  Score=217.64  Aligned_cols=174  Identities=10%  Similarity=0.046  Sum_probs=148.7

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCcc-ccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCCh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSY-FRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGI   80 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~   80 (358)
                      .+...|+|+..  +++|++++++|++.|+++.+ .+.++++.|....    .++            ++.+++|||||+|.
T Consensus        86 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~------------~l~gktvGIiGlG~  147 (324)
T 3evt_A           86 VVANTSGIHAD--AISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTS------------TLTGQQLLIYGTGQ  147 (324)
T ss_dssp             EEECCTTHHHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCC------------CSTTCEEEEECCSH
T ss_pred             EEEECCCcCch--HHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCc------------cccCCeEEEECcCH
Confidence            34556677777  89999999999999999999 9999999997543    112            78889999999999


Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  160 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v  160 (358)
                      ||+.+|++++.+|++|++|||+++..+.+..  .....++++++++||+|++|+|.+++|++++  +++.++.|++|+++
T Consensus       148 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li--~~~~l~~mk~gail  223 (324)
T 3evt_A          148 IGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLF--STELFQQTKQQPML  223 (324)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCB--SHHHHHTCCSCCEE
T ss_pred             HHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhc--CHHHHhcCCCCCEE
Confidence            9999999999999999999998765443221  1234578999999999999999999999999  78889999999999


Q ss_pred             EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      ||++|+.++++++|.++|+++.+.....+++..+|..
T Consensus       224 IN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~  260 (324)
T 3evt_A          224 INIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP  260 (324)
T ss_dssp             EECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCC
T ss_pred             EEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCC
Confidence            9999999999999999999998888788888777643

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.93  E-value=6.2e-27  Score=217.26  Aligned_cols=175  Identities=13%  Similarity=0.054  Sum_probs=145.4

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|.+.......+.            ++.+++|||||+|.||
T Consensus       123 V~n~~~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~------------~l~gktvGIIGlG~IG  188 (365)
T 4hy3_A          123 VVTTGQVFAE--PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASAR------------LIAGSEIGIVGFGDLG  188 (365)
T ss_dssp             EEECGGGGHH--HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCC------------CSSSSEEEEECCSHHH
T ss_pred             EEeCCCccch--HHHHHHHHHHHHHHhchhHHHHHHHcCCcccccccccccc------------ccCCCEEEEecCCccc
Confidence            4556788887  8999999999999999999999999999653221111112            7889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++||++. +.+...+.|+.. .++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       189 ~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li--~~~~l~~mk~gailIN  264 (365)
T 4hy3_A          189 KALRRVLSGFRARIRVFDPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFL--GAEAFSSMRRGAAFIL  264 (365)
T ss_dssp             HHHHHHHTTSCCEEEEECSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CC--CHHHHHTSCTTCEEEE
T ss_pred             HHHHHhhhhCCCEEEEECCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhc--CHHHHhcCCCCcEEEE
Confidence            999999999999999999985 334445556664 589999999999999999999999999  7889999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.++++++|.++|+++.+. ...+++..+|.
T Consensus       265 ~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl  297 (365)
T 4hy3_A          265 LSRADVVDFDALMAAVSSGHIV-AASDVYPEEPL  297 (365)
T ss_dssp             CSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSC
T ss_pred             CcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCC
Confidence            9999999999999999999887 56788877654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.93  E-value=4.1e-25  Score=209.63  Aligned_cols=250  Identities=13%  Similarity=0.125  Sum_probs=187.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-CCHHHH---------------hhcCCEEEE
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEV---------------AASCDVTFA  132 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~---------------~~~aDivi~  132 (358)
                      .+.++.|||+|.||..+|..|++.|++|++||+++++++.+.+...... ..++++               +++||+||+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii   89 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFII   89 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEE
Confidence            4568999999999999999999999999999999999888765322111 112222               357999999


Q ss_pred             eeCChhh-----------HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh-cC------CeEecCCCCCCC
Q 018303          133 MLADPES-----------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA-TG------ASFLEAPVSGSK  194 (358)
Q Consensus       133 ~vp~~~~-----------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~-~~------~~~~~~~~~~~~  194 (358)
                      |||.+..           +....   +.+.+.+++|++||+.|+..|...+.+.+.+.+ .+      +.++++|.+..+
T Consensus        90 ~VpTp~~~~~~~~~Dl~~V~~~~---~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~  166 (431)
T 3ojo_A           90 AVPTPNNDDQYRSCDISLVMRAL---DSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLP  166 (431)
T ss_dssp             CCCCCBCSSSSCBBCCHHHHHHH---HHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCT
T ss_pred             EeCCCccccccCCccHHHHHHHH---HHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCC
Confidence            9997652           44444   678888999999999999999999998776544 34      367889988766


Q ss_pred             CcCCCC---ceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303          195 KPAEDG---QLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL  271 (358)
Q Consensus       195 ~~~~~~---~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~  271 (358)
                      ..+..+   +..++.+++++..+.++++++.++..++++++++++++.|+++|.+.+..+++++|+..+|++.|+|.+++
T Consensus       167 G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v  246 (431)
T 3ojo_A          167 GKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDV  246 (431)
T ss_dssp             TSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             cchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            443221   23567778999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018303          272 VEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA  337 (358)
Q Consensus       272 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a  337 (358)
                      .+.+.....           +  +.+.|  |+..-.+.||..++...+++.+   +++++++++....
T Consensus       247 ~~~~~~~~r-----------i--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~~~  298 (431)
T 3ojo_A          247 IEMANKHPR-----------V--NIHQPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINNSM  298 (431)
T ss_dssp             HHHHTTSTT-----------C--CCCCCCSCCCCCCBCSCC---------CC---HHHHHHHHHHHTH
T ss_pred             HHHHccCCC-----------c--ccCCCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHHHh
Confidence            999886431           1  11233  3445567888888888888887   7888777665544

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.93  E-value=2.5e-27  Score=218.53  Aligned_cols=174  Identities=16%  Similarity=0.120  Sum_probs=150.7

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      .+...|+|+..  +++|+++++++++.|+++.+.+.++++.|..+....  ++            ++.+++|||||+|+|
T Consensus        89 ~v~n~p~~~~~--~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~--~~------------~l~g~tvGIiG~G~I  152 (334)
T 3kb6_A           89 LVTHIPAYSPE--SVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEIL--AR------------ELNRLTLGVIGTGRI  152 (334)
T ss_dssp             EEECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGC--BC------------CGGGSEEEEECCSHH
T ss_pred             EEEECCCcCcH--HHHHHHHHHHHHHhhccccccccccccccccccccc--cc------------eecCcEEEEECcchH
Confidence            34556788888  889999999999999999999999999997654221  12            678899999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      |+.+|+++..+|++|++||+.+..  ...+.++.. .++++++++||+|++|+|.+++|++++  +++.++.||+|+++|
T Consensus       153 G~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~li--~~~~l~~mk~~a~lI  227 (334)
T 3kb6_A          153 GSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHMI--NEERISLMKDGVYLI  227 (334)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTEEEE
T ss_pred             HHHHHHhhcccCceeeecCCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccCc--CHHHHhhcCCCeEEE
Confidence            999999999999999999987543  334445554 589999999999999999999999999  899999999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      |++||..+++++|.++|+++.+.....+|+..+|.
T Consensus       228 N~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl  262 (334)
T 3kb6_A          228 NTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI  262 (334)
T ss_dssp             ECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred             ecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence            99999999999999999999888888888877754

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.93  E-value=6.5e-27  Score=215.55  Aligned_cols=172  Identities=16%  Similarity=0.170  Sum_probs=123.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|...  +++|++++++|++.|+++.+.+.+|+|.|.....+.+ ++            ++.+++|||||+|+||
T Consensus       119 V~n~pg~~~~--~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~-~~------------~l~gktiGIIGlG~IG  183 (340)
T 4dgs_A          119 VTTTPGVLAD--DVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPL-GH------------SPKGKRIGVLGLGQIG  183 (340)
T ss_dssp             EECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CC-CC------------CCTTCEEEEECCSHHH
T ss_pred             EEECCCCCcc--hHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCc-cc------------cccCCEEEEECCCHHH
Confidence            4456788887  8999999999999999999999999999975411111 12            7889999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|.+|||+++..     .+.....++++++++||+|++|+|.++++++++  +++.++.|++++++||
T Consensus       184 ~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li--~~~~l~~mk~gailIN  256 (340)
T 4dgs_A          184 RALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIV--DASLLQALGPEGIVVN  256 (340)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC------------CHHHHHHTTTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHh--hHHHHhcCCCCCEEEE
Confidence            999999999999999999987642     234556799999999999999999999999999  7888999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.+++++++.++++++.+.....+++..+|.
T Consensus       257 ~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~  290 (340)
T 4dgs_A          257 VARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA  290 (340)
T ss_dssp             CSCC--------------CCSSEEEESCCSSSSS
T ss_pred             CCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence            9999999999999999999888888888877764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.93  E-value=3.2e-27  Score=215.96  Aligned_cols=172  Identities=12%  Similarity=0.101  Sum_probs=144.3

Q ss_pred             eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT   83 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~   83 (358)
                      ...|+|+. ..+++|++++++|++.|+++.+.+.+++|.|.....     +            ++.+++|||||+|+||+
T Consensus        91 ~~~~~~~~-~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-----~------------~l~g~tvGIiG~G~IG~  152 (315)
T 3pp8_A           91 FRLEDTGM-GLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPE-----Y------------TREEFSVGIMGAGVLGA  152 (315)
T ss_dssp             EEC--CCC-HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----C------------CSTTCCEEEECCSHHHH
T ss_pred             EEcCCCCc-cHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCC-----C------------CcCCCEEEEEeeCHHHH
Confidence            33455653 348999999999999999999999999999975421     1            67889999999999999


Q ss_pred             HHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEc
Q 018303           84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus        84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      .+|++++.+|++|++|||+++..+.+...  ....++++++++||+|++|+|.+++|++++  +++.++.|++|+++||+
T Consensus       153 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li--~~~~l~~mk~gailIN~  228 (315)
T 3pp8_A          153 KVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGII--NSELLDQLPDGAYVLNL  228 (315)
T ss_dssp             HHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCB--SHHHHTTSCTTEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhc--cHHHHhhCCCCCEEEEC
Confidence            99999999999999999987654322111  112578999999999999999999999999  78899999999999999


Q ss_pred             cCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          164 STVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       164 s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      +|+.++++++|.++|+++.+.....+++..+|..
T Consensus       229 aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~  262 (315)
T 3pp8_A          229 ARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLP  262 (315)
T ss_dssp             SCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCC
T ss_pred             CCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCC
Confidence            9999999999999999998887777888777643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.93  E-value=7.6e-27  Score=210.66  Aligned_cols=168  Identities=13%  Similarity=0.130  Sum_probs=145.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +++|+....  .+++|++++++|++.|+++.+.+.+++|.|.....     +            ++.+++|||||+|.||
T Consensus        74 ~~~~~~~~~--~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-----~------------~l~g~tvGIIGlG~IG  134 (290)
T 3gvx_A           74 LCSNAGAYS--ISVAEHAFALLLAHAKNILENNELMKAGIFRQSPT-----T------------LLYGKALGILGYGGIG  134 (290)
T ss_dssp             EECCHHHHH--HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC-----C------------CCTTCEEEEECCSHHH
T ss_pred             EeecCCcce--eeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCc-----e------------eeecchheeeccCchh
Confidence            345553222  38999999999999999999999999999975431     1            6788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||+++..+.     .....++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       135 ~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~l~~mk~gailIN  207 (290)
T 3gvx_A          135 RRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMV--NSRLLANARKNLTIVN  207 (290)
T ss_dssp             HHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTCCTTCEEEE
T ss_pred             HHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhh--hHHHHhhhhcCceEEE
Confidence            99999999999999999998765432     3456699999999999999999999999999  7888999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.+++++++.++++++++.....+++..+|.
T Consensus       208 ~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          208 VARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             CSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             eehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            9999999999999999999888888888877654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.92  E-value=5.6e-25  Score=205.18  Aligned_cols=263  Identities=13%  Similarity=0.082  Sum_probs=197.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC--------------CccCCCHHHHhhcCCEEEEee
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~v  134 (358)
                      ..|+|+|||+|.||+.+|..|++.|++|.+|+|++++.+.+.+.+              +..++++.++++++|+||+++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            347999999999999999999999999999999988877776533              234568889999999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhHH----HHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCH
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS----KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDK  210 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  210 (358)
                      | +..++.++   +++.+.+++++++|+++.+-....    +.+.+.+....+.+++.|.+..+.........++.+.++
T Consensus       108 p-~~~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~  183 (356)
T 3k96_A          108 P-SFAFHEVI---TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNS  183 (356)
T ss_dssp             C-HHHHHHHH---HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred             C-HHHHHHHH---HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence            7 67899999   888888999999999987654432    344455544456778888876554444444455666788


Q ss_pred             hHHHHHHHHHHHhcCCeEEeCCcChHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018303          211 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMK-----------------LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE  273 (358)
Q Consensus       211 ~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k-----------------~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~  273 (358)
                      +..+.++++|+..+++++...+.-..+|.+                 +..|.....+...++|+.+++++.|++++++..
T Consensus       184 ~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~g  263 (356)
T 3k96_A          184 QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG  263 (356)
T ss_dssp             HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcc
Confidence            999999999999999998888843355544                 444566677889999999999999999999875


Q ss_pred             HHhhc----cccchhhhcc--ccccccCCCCC-----CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018303          274 VVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       274 ~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      +...+    +..|+..+++  +..+.++....     -..+..+.++.+.+.++++++|+++|+++++++++.
T Consensus       264 l~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~  336 (356)
T 3k96_A          264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH  336 (356)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             cchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh
Confidence            42221    2334444443  22333331110     023456788999999999999999999999999885

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.92  E-value=1.8e-26  Score=216.77  Aligned_cols=172  Identities=10%  Similarity=0.063  Sum_probs=144.1

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|.|+++  +++|+++++++++.|+++.+.+.+++|.|.+.....   .            ++.+++|||||+|+||
T Consensus       106 V~n~p~~n~~--aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~---~------------el~gktvGIIGlG~IG  168 (416)
T 3k5p_A          106 VFNAPFSNTR--SVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGS---R------------EVRGKTLGIVGYGNIG  168 (416)
T ss_dssp             EECCSSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTC---C------------CSTTCEEEEECCSHHH
T ss_pred             EEeCCCcccH--HHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCC---c------------cCCCCEEEEEeeCHHH
Confidence            4456788888  899999999999999999999999999998653211   1            7888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+++..+|++|++||+++....    .+.....++++++++||+|++|+|.++++++++  +++.++.||+|+++||
T Consensus       169 ~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li--~~~~l~~mk~gailIN  242 (416)
T 3k5p_A          169 SQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLI--TEAKLRKMKKGAFLIN  242 (416)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCB--CHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhc--CHHHHhhCCCCcEEEE
Confidence            9999999999999999999754321    134456799999999999999999999999999  7888999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      ++|+.++++++|.++|+++.+.....+++..+|..
T Consensus       243 ~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~  277 (416)
T 3k5p_A          243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPAS  277 (416)
T ss_dssp             CSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSS
T ss_pred             CCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCC
Confidence            99999999999999999998887778888776543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.92  E-value=7.6e-27  Score=215.35  Aligned_cols=172  Identities=10%  Similarity=0.062  Sum_probs=146.9

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccC-CCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCCh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKP-INSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGI   80 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~   80 (358)
                      .+...|+|+..  +++|++++++|++.|+++.+.+.+| +|.|.+...  ..++            ++.+++|||||+|.
T Consensus        95 ~v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~--~~~~------------~l~gktvgIiGlG~  158 (343)
T 2yq5_A           95 LVTNVPVYSPR--AIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSN--LISN------------EIYNLTVGLIGVGH  158 (343)
T ss_dssp             EEECCSCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGG--GCBC------------CGGGSEEEEECCSH
T ss_pred             EEEECCCCCcH--HHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccC--CCcc------------ccCCCeEEEEecCH
Confidence            34456789988  8999999999999999999999999 888754221  1112            67889999999999


Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY  160 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v  160 (358)
                      ||+.+|++++.+|++|++|||+++..   .+.+... .++++++++||+|++|+|.++++++++  +++.++.|++|+++
T Consensus       159 IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gail  232 (343)
T 2yq5_A          159 IGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMI--GEKQLKEMKKSAYL  232 (343)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHh--hHHHHhhCCCCcEE
Confidence            99999999999999999999987641   1223443 489999999999999999999999999  78889999999999


Q ss_pred             EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ||++|+.++++++|.++|+++.+.....+++..++
T Consensus       233 IN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          233 INCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             EECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            99999999999999999999988777778887766

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.92  E-value=6.5e-26  Score=207.29  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=147.3

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+++|.|.....   .++            ++.+++|||||+|+||
T Consensus        92 v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~---~~~------------~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           92 VVNAPAASSR--SVAELAVGLMFSVARKIAFADRKMREGVWAKKEA---MGI------------ELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             EECCGGGGHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTC---CBC------------CCTTCEEEEECCSHHH
T ss_pred             EEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCc---CCc------------ccCCceEEEEccCHHH
Confidence            4445788877  8999999999999999999999999999964211   112            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||++++ +...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~lin  230 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLI--NEERLKLMKKTAILIN  230 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhc--CHHHHhcCCCCeEEEE
Confidence            99999999999999999998876 44455676654 89999999999999999999999999  6778899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      ++|+.+++++++.++++++.+.....+++..+|.
T Consensus       231 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (307)
T 1wwk_A          231 TSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL  264 (307)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred             CCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            9999999999999999998877666666665543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.92  E-value=8.4e-26  Score=207.72  Aligned_cols=176  Identities=13%  Similarity=0.065  Sum_probs=147.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+++|.|..+......+.            ++.+++|||||+|+||
T Consensus        93 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~------------~l~g~~vgIIG~G~IG  158 (320)
T 1gdh_A           93 VGNAPHGVTV--ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGE------------KLDNKTLGIYGFGSIG  158 (320)
T ss_dssp             EECCCCSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBC------------CCTTCEEEEECCSHHH
T ss_pred             EEEcCCCCHH--HHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCc------------CCCCCEEEEECcCHHH
Confidence            4445788877  8999999999999999999999999999964221111111            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcC-CccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNR-TKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      +.+|+++..+|++|++||+ +++. ....+.|+....++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i--~~~~l~~mk~gailI  235 (320)
T 1gdh_A          159 QALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAIVV  235 (320)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc--CHHHHhhCCCCcEEE
Confidence            9999999999999999999 8765 33444567666689999999999999999999999999  677889999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      |++|+.+++++++.++++++++.....+++..+|
T Consensus       236 n~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP  269 (320)
T 1gdh_A          236 NTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  269 (320)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             ECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            9999999999999999999877766666665554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.92  E-value=6.5e-26  Score=211.64  Aligned_cols=177  Identities=11%  Similarity=0.035  Sum_probs=151.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+++|.|.... ....            ..++.+++|||||+|+||
T Consensus       112 V~n~pg~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-~~~~------------~~~l~g~tvgIIG~G~IG  176 (364)
T 2j6i_A          112 VLEVTGSNVV--SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAA-IAKD------------AYDIEGKTIATIGAGRIG  176 (364)
T ss_dssp             EEECTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTT------------CCCSTTCEEEEECCSHHH
T ss_pred             EEECCCcCcH--HHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCc-ccCC------------cccCCCCEEEEECcCHHH
Confidence            4455788877  899999999999999999999999999996311 0000            116888999999999999


Q ss_pred             HHHHHHHHHCCCc-EEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303           83 TPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus        83 ~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      +.+|+++..+|++ |++|||++...+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|++|+++|
T Consensus       177 ~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~lI  254 (364)
T 2j6i_A          177 YRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLI--NKELLSKFKKGAWLV  254 (364)
T ss_dssp             HHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEE
T ss_pred             HHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHh--CHHHHhhCCCCCEEE
Confidence            9999999999998 9999998866665556676666789999999999999999999999999  678889999999999


Q ss_pred             EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      |++|+.++++++|.++++++++.....+++..+|.
T Consensus       255 n~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~  289 (364)
T 2j6i_A          255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPA  289 (364)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             ECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence            99999999999999999999888888888877653

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.92  E-value=5.9e-26  Score=209.28  Aligned_cols=172  Identities=12%  Similarity=0.092  Sum_probs=147.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|....   ..+.            ++.+++|||||+|.||
T Consensus       115 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~~~------------~l~g~tvgIIGlG~IG  177 (335)
T 2g76_A          115 VMNTPNGNSL--SAAELTCGMIMCLARQIPQATASMKDGKWERKK---FMGT------------ELNGKTLGILGLGRIG  177 (335)
T ss_dssp             EECCSSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG---GCBC------------CCTTCEEEEECCSHHH
T ss_pred             EEECCCccch--HHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC---CCCc------------CCCcCEEEEEeECHHH
Confidence            3445788887  889999999999999999999999999996321   1111            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||++++ +...+.|+.. .++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       178 ~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gailIN  253 (335)
T 2g76_A          178 REVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLL--NDNTFAQCKKGVRVVN  253 (335)
T ss_dssp             HHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSB--CHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhh--CHHHHhhCCCCcEEEE
Confidence            99999999999999999998765 3344556654 489999999999999999999999999  6788999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++.+.....+++..+|
T Consensus       254 ~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP  286 (335)
T 2g76_A          254 CARGGIVDEGALLRALQSGQCAGAALDVFTEEP  286 (335)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             CCCccccCHHHHHHHHHhCCccEEEEeecCCCC
Confidence            999999999999999999887766666777665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.92  E-value=7e-26  Score=212.22  Aligned_cols=174  Identities=9%  Similarity=0.010  Sum_probs=147.8

Q ss_pred             eccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHH
Q 018303            6 KSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPM   85 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~   85 (358)
                      .|.|...  +++|++++++|++.|+++.+.+.+++|.|..... ...            ..++.+++|||||+|+||+.+
T Consensus       142 ~~g~~~~--~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~-~~~------------~~~l~gktvGIIGlG~IG~~v  206 (393)
T 2nac_A          142 VTYCNSI--SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADC-VSH------------AYDLEAMHVGTVAAGRIGLAV  206 (393)
T ss_dssp             CTTTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHH-HTT------------CCCCTTCEEEEECCSHHHHHH
T ss_pred             CCCcccH--HHHHHHHHHHHHHHhccHHHHHHHHcCCCCcccc-ccC------------CccCCCCEEEEEeECHHHHHH
Confidence            3666656  8999999999999999999999999999963110 000            116888999999999999999


Q ss_pred             HHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303           86 AQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus        86 a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      |++++.+|++|++||+++...+...+.|+....++++++++||+|++|+|.++++++++  +++.++.|++|+++||++|
T Consensus       207 A~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li--~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          207 LRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             HHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHh--hHHHHhhCCCCCEEEECCC
Confidence            99999999999999998766555555577666789999999999999999999999999  6788899999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          166 VDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       166 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      +.+++++++.++++++.+.....+++..++.
T Consensus       285 G~~vde~aL~~aL~~g~i~gA~lDV~~~EP~  315 (393)
T 2nac_A          285 GKLCDRDAVARALESGRLAGYAGDVWFPQPA  315 (393)
T ss_dssp             GGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             chHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence            9999999999999998887777778776654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.92  E-value=3.9e-24  Score=196.87  Aligned_cols=262  Identities=16%  Similarity=0.123  Sum_probs=189.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC------------CCHHHHhh---cCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------------PSPDEVAA---SCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~---~aDivi~~vp  135 (358)
                      |+|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+.|....            .+..++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            69999999999999999999999999999999888777766553221            13345544   8999999997


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCCCC--CCcCCCCceEEEe--c
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGS--KKPAEDGQLIFLA--A  207 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~--~  207 (358)
                       +..++.++   +++.+.++++++||+++++.. ..+.+.+.+.+.    +..+.+++..+.  ......+.+.+..  +
T Consensus        84 -~~~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~  158 (316)
T 2ew2_A           84 -AQQLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP  158 (316)
T ss_dssp             -HHHHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred             -cccHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence             67888888   778888899999999987644 334555555443    212222223221  1122345554442  3


Q ss_pred             CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCC
Q 018303          208 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GSMMATFSEGLLHSEKVGL  266 (358)
Q Consensus       208 g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~---------------------~~~~~~~~Ea~~l~~~~G~  266 (358)
                      ++++..+.+.++|+.+|..++..++.+...|.|++.|...                     ..+..++.|+..++++.|+
T Consensus       159 ~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~  238 (316)
T 2ew2_A          159 SGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAI  238 (316)
T ss_dssp             GGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4678889999999999999999889889999999998643                     4566889999999999999


Q ss_pred             CH--HHHHHHHhhccccchhhhccccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          267 DP--NVLVEVVSQGAISAPMYSLKGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       267 ~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      ++  +.+.+.+..........++ .++|. .|+ ..++..+ ..++++.++++++++|+++|++++++++++.....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~-~~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~  312 (316)
T 2ew2_A          239 YLDQAEVYTHIVQTYDPNGIGLH-YPSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEEL  312 (316)
T ss_dssp             CCCHHHHHHHHHHTTCTTTTTTS-CCHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhccccCCCC-CcHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            86  4566666542211100122 12233 234 4455555 68899999999999999999999999999887654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.91  E-value=3.5e-26  Score=215.79  Aligned_cols=170  Identities=12%  Similarity=0.023  Sum_probs=140.6

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|++.  +++|++++++++++|+++.+.+.+++|.|.+....   +.            ++.+++|||||+|+||
T Consensus        95 V~n~p~~n~~--~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~---~~------------el~gktlGiIGlG~IG  157 (404)
T 1sc6_A           95 VFNAPFSNTR--SVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG---SF------------EARGKKLGIIGYGHIG  157 (404)
T ss_dssp             EECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CC------------CSTTCEEEEECCSHHH
T ss_pred             EEecCcccHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCC---cc------------ccCCCEEEEEeECHHH
Confidence            3445788887  89999999999999999999999999999743211   11            7888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+++.++|++|++|||++....    .++....++++++++||+|++|+|.+++|++++  +++.++.||+|+++||
T Consensus       158 ~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~ga~lIN  231 (404)
T 1sc6_A          158 TQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLIN  231 (404)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHh--hHHHHhhcCCCeEEEE
Confidence            9999999999999999999765321    135556689999999999999999999999999  6788999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++.+.....+++..+|
T Consensus       232 ~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP  264 (404)
T 1sc6_A          232 ASRGTVVDIPALADALASKHLAGAAIDVFPTEP  264 (404)
T ss_dssp             CSCSSSBCHHHHHHHHHTTSEEEEEEEC-----
T ss_pred             CCCChHHhHHHHHHHHHcCCccEEEEeecCCCC
Confidence            999999999999999999877766556666554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.91  E-value=1.3e-25  Score=204.63  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=140.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +..+|++...  +++|++++++|++.|+++.+.+.+++|.|......    .            ++.+++|||||+|+||
T Consensus        75 v~~~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~----~------------~l~g~~vgIIG~G~IG  136 (303)
T 1qp8_A           75 VAGNAGSNAD--AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEI----P------------LIQGEKVAVLGLGEIG  136 (303)
T ss_dssp             EECCCSSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCC----C------------CCTTCEEEEESCSTHH
T ss_pred             EEECCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCC----C------------CCCCCEEEEEccCHHH
Confidence            4455777666  89999999999999999999999999999643111    1            5778899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||+++  +.    +.....++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       137 ~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i--~~~~l~~mk~gailin  208 (303)
T 1qp8_A          137 TRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVFVN  208 (303)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHh--CHHHHhhCCCCCEEEE
Confidence            9999999999999999999876  21    33445689999999999999999999999999  6688999999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVS  191 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  191 (358)
                      ++|+.+++++++.++++++.+.....+++
T Consensus       209 ~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          209 VGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             CSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             CCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            99999999999999999988877767777

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.91  E-value=1.8e-25  Score=207.01  Aligned_cols=180  Identities=12%  Similarity=0.047  Sum_probs=148.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|+++++++++.|+++.+.+.+++|.|...... .  +.+     .....++.+++|||||+|+||
T Consensus       111 V~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~-~--~~~-----~~~~~~l~g~tvGIIG~G~IG  180 (347)
T 1mx3_A          111 VCNVPAASVE--ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQ-I--REV-----ASGAARIRGETLGIIGLGRVG  180 (347)
T ss_dssp             EECCCSTTHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHH-H--HHH-----TTTCCCCTTCEEEEECCSHHH
T ss_pred             EEECCCCCHH--HHHHHHHHHHHHHHHhHHHHHHHHHcCCccccccc-c--ccc-----ccCccCCCCCEEEEEeECHHH
Confidence            4455789887  89999999999999999999999999999632100 0  000     000126788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+++.++|++|++||+++++. .....|+..+.++++++++||+|++++|.++++++++  +++.++.|++|+++||
T Consensus       181 ~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li--~~~~l~~mk~gailIN  257 (347)
T 1mx3_A          181 QAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQGAFLVN  257 (347)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHh--HHHHHhcCCCCCEEEE
Confidence            999999999999999999987642 2234466666789999999999999999999999999  6788899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++++.....+++..+|
T Consensus       258 ~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  290 (347)
T 1mx3_A          258 TARGGLVDEKALAQALKEGRIRGAALDVHESEP  290 (347)
T ss_dssp             CSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             CCCChHHhHHHHHHHHHhCCCcEEEEeecccCC
Confidence            999999999999999999988777777776655

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.91  E-value=3.3e-25  Score=204.95  Aligned_cols=176  Identities=13%  Similarity=0.155  Sum_probs=147.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+++|.|..+......+.            ++.+++|||||+|.||
T Consensus       102 v~n~~~~~~~--~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~------------~l~g~~vgIIG~G~iG  167 (330)
T 2gcg_A          102 VGYTPDVLTD--TTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGY------------GLTQSTVGIIGLGRIG  167 (330)
T ss_dssp             EECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBC------------CCTTCEEEEECCSHHH
T ss_pred             EEeCCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCc------------CCCCCEEEEECcCHHH
Confidence            4455788777  8999999999999999999999999999974322111112            6888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+.++.+|++|++|||++++.+...+.++... ++++++++||+|++|+|.+.++++++  +++.++.|++++++||
T Consensus       168 ~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i--~~~~~~~mk~gailIn  244 (330)
T 2gcg_A          168 QAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLC--NKDFFQKMKETAVFIN  244 (330)
T ss_dssp             HHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhh--CHHHHhcCCCCcEEEE
Confidence            99999999999999999998876665555566665 89999999999999999988999998  5678889999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++++.....+++..++
T Consensus       245 ~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep  277 (330)
T 2gcg_A          245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP  277 (330)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             CCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            999999999999999998877655556665544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.91  E-value=1.5e-25  Score=207.15  Aligned_cols=171  Identities=15%  Similarity=0.088  Sum_probs=146.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+.+  +++|++++++|++.|+++.+.+.+|+|.|.+...   .++            ++.+++|||||+|+||
T Consensus        96 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~------------~l~g~~vgIiG~G~IG  158 (333)
T 1j4a_A           96 ITNVPVYSPN--AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT---IGR------------EVRDQVVGVVGTGHIG  158 (333)
T ss_dssp             EECCCCSCHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTC---CBC------------CGGGSEEEEECCSHHH
T ss_pred             EEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCc---ccc------------cCCCCEEEEEccCHHH
Confidence            4445788888  8999999999999999999999999999963221   112            6778899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+++..+|++|++||+++++.  +.+ .+....++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~lIn  233 (333)
T 1j4a_A          159 QVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVIVN  233 (333)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHH--hHHHHhhCCCCcEEEE
Confidence            999999999999999999987653  222 24444589999999999999999999999999  6778899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.++++++|.++++++++.....+++..+|
T Consensus       234 ~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  266 (333)
T 1j4a_A          234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV  266 (333)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCT
T ss_pred             CCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Confidence            999999999999999999998888888887776

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.91  E-value=4.1e-25  Score=202.22  Aligned_cols=169  Identities=12%  Similarity=0.010  Sum_probs=141.7

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|.........+.            ++.+++|||||+|+||
T Consensus        91 v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~------------~l~g~~vgIIG~G~IG  156 (311)
T 2cuk_A           91 VTHTPGVLTE--ATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGL------------DLQGLTLGLVGMGRIG  156 (311)
T ss_dssp             EECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBC------------CCTTCEEEEECCSHHH
T ss_pred             EEECCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCc------------CCCCCEEEEEEECHHH
Confidence            4455788877  8899999999999999999999999999964221111111            6788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||++++..      +. ..++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       157 ~~~A~~l~~~G~~V~~~d~~~~~~~------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li--~~~~l~~mk~ga~lin  227 (311)
T 2cuk_A          157 QAVAKRALAFGMRVVYHARTPKPLP------YP-FLSLEELLKEADVVSLHTPLTPETHRLL--NRERLFAMKRGAILLN  227 (311)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCSSS------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCCcccc------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhc--CHHHHhhCCCCcEEEE
Confidence            9999999999999999999876643      22 4689999999999999999999999999  5678889999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++ +.+.....++++.++
T Consensus       228 ~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP  259 (311)
T 2cuk_A          228 TARGALVDTEALVEALR-GHLFGAGLDVTDPEP  259 (311)
T ss_dssp             CSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred             CCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence            99999999999999999 777655556666554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.91  E-value=2.1e-25  Score=205.59  Aligned_cols=170  Identities=11%  Similarity=0.114  Sum_probs=145.0

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|.... .. .+.            ++.+++|||||+|+||
T Consensus       113 v~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~-~~~------------~l~g~~vgIIG~G~iG  176 (333)
T 3ba1_A          113 VTNTPDVLTD--DVADLAIGLILAVLRRICECDKYVRRGAWKFGD-FK-LTT------------KFSGKRVGIIGLGRIG  176 (333)
T ss_dssp             EECCCSTTHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCC-CC-CCC------------CCTTCCEEEECCSHHH
T ss_pred             EEECCCcchH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccc-cc-ccc------------ccCCCEEEEECCCHHH
Confidence            4455788887  899999999999999999999999999996321 11 111            6788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||+++...     +.....++++++++||+|++++|.++++++++  +++.++.|++++++||
T Consensus       177 ~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li--~~~~l~~mk~gailIn  249 (333)
T 3ba1_A          177 LAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHII--NREVIDALGPKGVLIN  249 (333)
T ss_dssp             HHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCB--CHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHh--hHHHHhcCCCCCEEEE
Confidence            9999999999999999999876532     45556789999999999999999988999999  6678889999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++++.....+++..+|
T Consensus       250 ~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP  282 (333)
T 3ba1_A          250 IGRGPHVDEPELVSALVEGRLGGAGLDVFEREP  282 (333)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTT
T ss_pred             CCCCchhCHHHHHHHHHcCCCeEEEEecCCCCC
Confidence            999999999999999999888766666766554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.91  E-value=2.4e-25  Score=204.12  Aligned_cols=170  Identities=14%  Similarity=0.054  Sum_probs=146.6

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|....     +.            ++.+++|||||+|+||
T Consensus        94 v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-----~~------------~l~g~~vgIIG~G~IG  154 (313)
T 2ekl_A           94 VVYAPGASTD--SAVELTIGLMIAAARKMYTSMALAKSGIFKKIE-----GL------------ELAGKTIGIVGFGRIG  154 (313)
T ss_dssp             EECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCC-----CC------------CCTTCEEEEESCSHHH
T ss_pred             EEeCCCCCch--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC-----CC------------CCCCCEEEEEeeCHHH
Confidence            4445788777  899999999999999999999999999996211     11            6788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||++++. ...+.|+.. .++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li--~~~~l~~mk~ga~lIn  230 (313)
T 2ekl_A          155 TKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPII--DYPQFELMKDNVIIVN  230 (313)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSB--CHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhh--CHHHHhcCCCCCEEEE
Confidence            999999999999999999988653 344556665 489999999999999999999999999  6778899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+++++++.++++++++.....+++..+|
T Consensus       231 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP  263 (313)
T 2ekl_A          231 TSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP  263 (313)
T ss_dssp             SSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSS
T ss_pred             CCCCcccCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            999999999999999999888777777777665

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.91  E-value=2.7e-25  Score=205.32  Aligned_cols=171  Identities=14%  Similarity=0.077  Sum_probs=146.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|++.  +++|++++++|++.|+++.+.+.+++|.|.+...  ..++            ++.+++|||||+|+||
T Consensus        95 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~------------~l~g~~vgIiG~G~IG  158 (331)
T 1xdw_A           95 MAFVPRYSPN--AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAF--MFSK------------EVRNCTVGVVGLGRIG  158 (331)
T ss_dssp             EECCCCCCHH--HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCST--TCCC------------CGGGSEEEEECCSHHH
T ss_pred             EEeCCCCCcH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccC--cCcc------------CCCCCEEEEECcCHHH
Confidence            4455788888  8999999999999999999999999999953111  1111            6778899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||++++.  + +..+. ..++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li--~~~~l~~mk~ga~lin  232 (331)
T 1xdw_A          159 RVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVV--TRDFLKKMKDGAILVN  232 (331)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSB--CHHHHHTSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHh--CHHHHhhCCCCcEEEE
Confidence            999999999999999999987653  1 12233 3489999999999999999999999999  6788899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.++++++|.++++++++.....+++..+|
T Consensus       233 ~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  265 (331)
T 1xdw_A          233 CARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA  265 (331)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGG
T ss_pred             CCCcccccHHHHHHHHHhCCceEEEEecCCCCC
Confidence            999999999999999999998888888887775

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.90  E-value=1.9e-25  Score=206.42  Aligned_cols=171  Identities=13%  Similarity=0.066  Sum_probs=145.0

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|.+...  ..+.            ++.+++|||||+|+||
T Consensus        94 v~n~p~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~------------~l~g~~vgIiG~G~IG  157 (333)
T 1dxy_A           94 LSNVPAYSPA--AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGK------------ELGQQTVGVMGTGHIG  157 (333)
T ss_dssp             EECCTTSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC--CCCC------------CGGGSEEEEECCSHHH
T ss_pred             EEeCCCCCch--HHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC--CCcc------------CCCCCEEEEECcCHHH
Confidence            4445788888  8999999999999999999999999999842011  1111            6778899999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++.+|++|++|||+++..  . +..+. ..++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       158 ~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li--~~~~l~~mk~ga~lIn  231 (333)
T 1dxy_A          158 QVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAIVIN  231 (333)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHh--CHHHHhhCCCCcEEEE
Confidence            999999999999999999987653  1 12233 3489999999999999999999999999  6788899999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.++++++|.++++++++.....+++..+|
T Consensus       232 ~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          232 TARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             CSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             CCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            999999999999999999988888888887664

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.90  E-value=3.6e-23  Score=185.72  Aligned_cols=248  Identities=12%  Similarity=0.110  Sum_probs=181.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|+|||+|.||..++..|...| ++|.+|||++++.+.+.+. |+....++.+++ ++|+|++++| +..++.++   .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~   75 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K   75 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence            58999999999999999999999 9999999999888877664 777777888888 9999999998 88899988   5


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcCC
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~~  226 (358)
                      ++.+  + +++||+++++...  +.+.+.+.. +..++.+ +.+.+.....+...++.++  +++..+.++++|+.+|..
T Consensus        76 ~l~~--~-~~ivv~~~~g~~~--~~l~~~~~~-~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~  148 (263)
T 1yqg_A           76 NIRT--N-GALVLSVAAGLSV--GTLSRYLGG-TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT  148 (263)
T ss_dssp             TCCC--T-TCEEEECCTTCCH--HHHHHHTTS-CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred             Hhcc--C-CCEEEEecCCCCH--HHHHHHcCC-CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCE
Confidence            5544  5 8999999555443  456666543 4556665 4444444445555566666  788999999999999987


Q ss_pred             eEEeC-CcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhccc--c-ccccCCCCC
Q 018303          227 RFYLG-DVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLKG--P-SMIESLYPT  299 (358)
Q Consensus       227 ~~~~g-~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~~--~-~~~~~~~~~  299 (358)
                      + +++ +........+.  .+.+...++..+.|+   +++.|++++++.+++..+...++ ++....  | .+....+.|
T Consensus       149 ~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (263)
T 1yqg_A          149 V-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSK  224 (263)
T ss_dssp             E-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCT
T ss_pred             E-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence            6 777 42222222221  123334444455555   68899999999998887654444 444333  4 445566778


Q ss_pred             CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          300 AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       300 ~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      ++++....+++       ++.|++.|+.+++.+.++++.+.|
T Consensus       225 ~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~  259 (263)
T 1yqg_A          225 GGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME  259 (263)
T ss_dssp             TSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence            88777665544       679999999999999999998764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.89  E-value=1.3e-24  Score=202.06  Aligned_cols=177  Identities=14%  Similarity=0.107  Sum_probs=147.9

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCC---CCCCCC-CCcccccccccccCCCcCCCCCCeEEEEcC
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINS---LPTKPL-FPLSFKVFSSQATGVSAEDELPGRIGFLGM   78 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~   78 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.   |..... ....+.            ++.+++|||||+
T Consensus       106 v~n~p~~~~~--~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~------------~l~g~~vgIIG~  171 (348)
T 2w2k_A          106 FANSRGAGDT--ATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAH------------NPRGHVLGAVGL  171 (348)
T ss_dssp             EECCTTTTHH--HHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCC------------CSTTCEEEEECC
T ss_pred             EEECCCCCcH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCc------------CCCCCEEEEEEE
Confidence            4445788877  8999999999999999999999999999   932100 000011            678899999999


Q ss_pred             ChhHHHHHHHHH-HCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCC
Q 018303           79 GIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG  157 (358)
Q Consensus        79 G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~  157 (358)
                      |+||+.+|++++ .+|++|++|||+++..+...+.|+....++++++++||+|++|+|.+.++++++  +++.++.|+++
T Consensus       172 G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li--~~~~l~~mk~g  249 (348)
T 2w2k_A          172 GAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI--DEAFFAAMKPG  249 (348)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB--CHHHHHHSCTT
T ss_pred             CHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh--hHHHHhcCCCC
Confidence            999999999999 999999999998876655555567666689999999999999999999999999  56788899999


Q ss_pred             CEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          158 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       158 ~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|||++|+.+++++++.++++++.+.....+++..++
T Consensus       250 ailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP  287 (348)
T 2w2k_A          250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP  287 (348)
T ss_dssp             EEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT
T ss_pred             CEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC
Confidence            99999999999999999999998877666777776653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.89  E-value=1.4e-23  Score=190.88  Aligned_cols=249  Identities=16%  Similarity=0.122  Sum_probs=176.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC---C-----ccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---A-----KYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g---~-----~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      |+|+|||+|.||..+|..|.+.|++|.+|+|++++.+.+...+   .     ...++ .+.++++|+|++++| +..++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~-~~~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLK-AWQVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSC-GGGHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEec-HHhHHH
Confidence            5899999999999999999999999999999987765543322   1     01233 467789999999997 567888


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh--cCCe----EecCCCCCCCCcCCCCceEEEe-cCCHhHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGAS----FLEAPVSGSKKPAEDGQLIFLA-AGDKSLYNT  215 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~  215 (358)
                      ++   +++.+.+++++++|+++++.. ..+.+.+.+.+  .+..    ....| .  ......+...+.. +++++..+.
T Consensus        79 v~---~~l~~~l~~~~~vv~~~~g~~-~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~  151 (291)
T 1ks9_A           79 AV---KSLASTLPVTTPILLIHNGMG-TIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSY  151 (291)
T ss_dssp             HH---HHHHTTSCTTSCEEEECSSSC-TTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTH
T ss_pred             HH---HHHHhhCCCCCEEEEecCCCC-cHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHH
Confidence            88   778888899999999877542 22234443332  1211    12233 1  2223345554443 345677789


Q ss_pred             HHHHHHHhcCCeEEeCCcChHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHHHH--
Q 018303          216 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM------------------GSMMATFSEGLLHSEKVGLDP--NVLVE--  273 (358)
Q Consensus       216 v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~------------------~~~~~~~~Ea~~l~~~~G~~~--~~~~~--  273 (358)
                      ++++|+.+|..+++.++.+...|.|++.|...                  ..+..++.|+..++++.|+++  +.+.+  
T Consensus       152 ~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~  231 (291)
T 1ks9_A          152 LADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYV  231 (291)
T ss_dssp             HHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999888999999999988                  677889999999999999986  44433  


Q ss_pred             --HHhhc-cccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          274 --VVSQG-AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       274 --~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                        .+..+ ...+.++.         |+..+...+.. .+++.++++++++|+++|+++.++++++...
T Consensus       232 ~~~~~~~~~~~ssm~~---------d~~~g~~~e~~-~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e  289 (291)
T 1ks9_A          232 MQVIDATAENISSMLQ---------DIRALRHTEID-YINGFLLRRARAHGIAVPENTRLFEMVKRKE  289 (291)
T ss_dssp             HHHHHHTTTCCCHHHH---------HHHTTCCCSGG-GTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCChHHH---------HHHcCCccHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence              23222 12222222         22222222222 4588999999999999999999999988654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.89  E-value=4.5e-22  Score=178.22  Aligned_cols=246  Identities=13%  Similarity=0.171  Sum_probs=184.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |+|+|||+|.||+.+++.|...|++|.+|||++++.+.+.+. |+..+.+++++++++|+|++|+| +...+.++   .+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~---~~   79 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL---KP   79 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH---TT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHH---HH
Confidence            699999999999999999999999999999999887777654 77777899999999999999998 77777777   33


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcCCe
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~~~  227 (358)
                          +++++++|+++.+....  .+.+.+. .+..++. ++.+.+.....+...++.++  +++..+.++++|+.+| .+
T Consensus        80 ----l~~~~~vv~~~~~~~~~--~l~~~~~-~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~  150 (259)
T 2ahr_A           80 ----LHFKQPIISMAAGISLQ--RLATFVG-QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-ST  150 (259)
T ss_dssp             ----SCCCSCEEECCTTCCHH--HHHHHHC-TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EE
T ss_pred             ----hccCCEEEEeCCCCCHH--HHHHhcC-CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CE
Confidence                34888999986554432  3555554 3445554 33344444445555555555  7889999999999999 68


Q ss_pred             EEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhccc--cccccCC-CCCCC
Q 018303          228 FYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSLKG--PSMIESL-YPTAF  301 (358)
Q Consensus       228 ~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~~~--~~~~~~~-~~~~~  301 (358)
                      +++++.......++.  .+.+...+..++.|+   +.+.|++++.+.+++..+...++ ++..+.  |.++.+. ++|++
T Consensus       151 ~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~  227 (259)
T 2ahr_A          151 FDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGG  227 (259)
T ss_dssp             EECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTS
T ss_pred             EEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCCh
Confidence            888887767777664  344444444555555   58899999999999998766665 444443  6666443 57888


Q ss_pred             chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          302 PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       302 ~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      ++..+.||++       +.|++..+.+++.+.++++.+
T Consensus       228 ~~~~~~~~l~-------~~g~~~~~~~a~~~~~~r~~~  258 (259)
T 2ahr_A          228 TTIAGLMELE-------RLGLTATVSSAIDKTIDKAKS  258 (259)
T ss_dssp             HHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-------HCChHHHHHHHHHHHHHHHhc
Confidence            8888777664       779999999999999988764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.89  E-value=1.3e-24  Score=201.32  Aligned_cols=175  Identities=10%  Similarity=0.039  Sum_probs=145.2

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCC----CCCCCCcccccccccccCCCcCCCCCCeEEEEcC
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLP----TKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGM   78 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~   78 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+++|.|.    .+......+.            ++.+++|||||+
T Consensus        93 v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------------~l~g~~vgIIG~  158 (334)
T 2dbq_A           93 VTNTPDVLTD--ATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGY------------DVYGKTIGIIGL  158 (334)
T ss_dssp             EECCCSTTHH--HHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCC------------CCTTCEEEEECC
T ss_pred             EEeCCCcCHH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccccccccccccc------------CCCCCEEEEEcc
Confidence            4445788777  899999999999999999999999999995    2111111111            678899999999


Q ss_pred             ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCC
Q 018303           79 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK  158 (358)
Q Consensus        79 G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~  158 (358)
                      |.||+.+|+.++.+|++|++|||+++. +...+.|+.. .++++++++||+|++|+|.+.++++++  +++.++.|++++
T Consensus       159 G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i--~~~~~~~mk~~a  234 (334)
T 2dbq_A          159 GRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLI--NEERLKLMKKTA  234 (334)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCB--CHHHHHHSCTTC
T ss_pred             CHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhh--CHHHHhcCCCCc
Confidence            999999999999999999999998876 4444446654 489999999999999999998899999  567788999999


Q ss_pred             EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++||++++.+.+++++.++++++.+.....++++.++
T Consensus       235 ilIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP  271 (334)
T 2dbq_A          235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP  271 (334)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             EEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC
Confidence            9999999999999999999999877766666776554

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.88  E-value=1.7e-23  Score=205.05  Aligned_cols=203  Identities=13%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++++++|+++.+.+.+++|.|.....   .+.            ++.+++|||||+|+||
T Consensus        92 v~n~p~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~---~~~------------~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           92 VVNAPTSNIH--SAAEHALALLLAASRQIPAADASLREHTWKRSSF---SGT------------EIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             EECCTTSSHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGC---CBC------------CCTTCEEEEECCSHHH
T ss_pred             EEECCCcchH--HHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCc---Ccc------------ccCCCEEEEEeeCHHH
Confidence            3445677777  8999999999999999999999999999974221   111            6788999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|++++++|++|++||+++. .+...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|++|+++||
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i--~~~~~~~~k~g~ilin  230 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVIIVN  230 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHhCCCEEEEECCCCC-hhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHh--CHHHHhCCCCCCEEEE
Confidence            9999999999999999999874 344445577665 89999999999999999888999999  4558889999999999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC----CCceEEEe---c-CCHhHHHH-----HHHHHHHhcCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE----DGQLIFLA---A-GDKSLYNT-----VAPLLDIMGKS  226 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~-g~~~~~~~-----v~~ll~~~g~~  226 (358)
                      ++++.++++.++.++++++++.....++++.+|...    ..+.++++   + .+++..+.     ++++.+.++..
T Consensus       231 ~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~  307 (529)
T 1ygy_A          231 AARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE  307 (529)
T ss_dssp             CSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999998877655556666555321    12233333   2 24555443     55666666543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.88  E-value=3.5e-22  Score=184.46  Aligned_cols=261  Identities=16%  Similarity=0.152  Sum_probs=180.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCcc--chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      .+..|+|+|||+|+||..++..|.+.|    ++|.+|+|+++  +.+.+.+.|+....+..++++++|+||+|+| +..+
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~   97 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHII   97 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHH
Confidence            455679999999999999999999999    89999999986  6677776788887889999999999999997 8899


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCCCCCCCCcCCCCceEEEecCC---HhHHHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAPVSGSKKPAEDGQLIFLAAGD---KSLYNT  215 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~  215 (358)
                      +.++   .++.+.++++++||+++++.+.  +.+.+.+.+.  ...++.... ..+.....+. .++++++   ++..+.
T Consensus        98 ~~vl---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~~p-~~p~~~~~g~-~v~~~g~~~~~~~~~~  170 (322)
T 2izz_A           98 PFIL---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRCMT-NTPVVVREGA-TVYATGTHAQVEDGRL  170 (322)
T ss_dssp             HHHH---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEEEC-CGGGGGTCEE-EEEEECTTCCHHHHHH
T ss_pred             HHHH---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEEeC-CcHHHHcCCe-EEEEeCCCCCHHHHHH
Confidence            9998   7777788899999999876554  3466666542  334443321 1122222333 4444554   788899


Q ss_pred             HHHHHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchh-hhc--ccc
Q 018303          216 VAPLLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPM-YSL--KGP  290 (358)
Q Consensus       216 v~~ll~~~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~-~~~--~~~  290 (358)
                      ++++|+.+|..++ +.+........+.  .+.+...++.++.|+   +.+.|++++.+.+++..+...++. ...  ..|
T Consensus       171 v~~ll~~~G~~~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p  246 (322)
T 2izz_A          171 MEQLLSSVGFCTE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHP  246 (322)
T ss_dssp             HHHHHHTTEEEEE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHhCCCEEE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            9999999997654 4443333333333  233444444444444   478999999999999886555542 322  234


Q ss_pred             ccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCcc
Q 018303          291 SMIESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDED  346 (358)
Q Consensus       291 ~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d  346 (358)
                      .++.+.+ .|++++..       .++..++.|++.++.+++.+.++++.+.|.+.+.
T Consensus       247 ~~l~~~v~sp~g~t~~-------~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~  296 (322)
T 2izz_A          247 GQLKDNVSSPGGATIH-------ALHVLESGGFRSLLINAVEASCIRTRELQSMADQ  296 (322)
T ss_dssp             HHHHHHHCCTTSHHHH-------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHhCCCCCcHHHH-------HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4443333 56554333       4566788999999999999999999987654433

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.88  E-value=2.2e-24  Score=199.41  Aligned_cols=177  Identities=14%  Similarity=0.144  Sum_probs=144.0

Q ss_pred             eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303            3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG   82 (358)
                      +...|+|+..  +++|++++++|++.|+++.+.+.+|+|.|..... ...+        ..+..++.+++|||||+|.||
T Consensus        90 v~n~~~~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~--------~~~~~~l~g~~vgIIG~G~iG  158 (333)
T 2d0i_A           90 VTKVSGLLSE--AVAEFTVGLIINLMRKIHYADKFIRRGEWESHAK-IWTG--------FKRIESLYGKKVGILGMGAIG  158 (333)
T ss_dssp             EECCCHHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHH-HHTT--------SCCCCCSTTCEEEEECCSHHH
T ss_pred             EEeCCCcChH--HHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcc-cccC--------CcccCCCCcCEEEEEccCHHH
Confidence            3445788777  8999999999999999999999999999963110 0000        001127888999999999999


Q ss_pred             HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      +.+|+.++.+|++|++|||+++. +...+.|+... ++++++++||+|++|+|.++++++++  +++.++.|+++ ++||
T Consensus       159 ~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i--~~~~~~~mk~g-ilin  233 (333)
T 2d0i_A          159 KAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHII--NEERVKKLEGK-YLVN  233 (333)
T ss_dssp             HHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSB--CHHHHHHTBTC-EEEE
T ss_pred             HHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHh--CHHHHhhCCCC-EEEE
Confidence            99999999999999999998875 43344455544 89999999999999999988999999  55678889999 9999


Q ss_pred             ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++|+.+.+++++.++++++.+.....++++.++
T Consensus       234 ~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP  266 (333)
T 2d0i_A          234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEP  266 (333)
T ss_dssp             CSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSS
T ss_pred             CCCCcccCHHHHHHHHHcCCceEEEecCCCCCC
Confidence            999999999999999998877777777776554

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.87  E-value=8.3e-21  Score=179.78  Aligned_cols=256  Identities=18%  Similarity=0.177  Sum_probs=191.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASC  127 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~a  127 (358)
                      .++.+|+|||+|.+|..+|..|+..|++|+++|.++++++.+.+.                    .+.++++.+++++.+
T Consensus        19 ~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a   98 (444)
T 3vtf_A           19 SHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT   98 (444)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence            455699999999999999999999999999999999887765421                    245677888999999


Q ss_pred             CEEEEeeCChh---------hHhhhhcccccccccCC---CCCEEEEccCCChhHHHHHHHH-HHhc----CCeEecCCC
Q 018303          128 DVTFAMLADPE---------SAMDVACGKHGAASGMG---PGKGYVDVSTVDGDTSKLINGH-IKAT----GASFLEAPV  190 (358)
Q Consensus       128 Divi~~vp~~~---------~~~~~~~~~~~~~~~l~---~~~~vi~~s~~~~~~~~~l~~~-l~~~----~~~~~~~~~  190 (358)
                      |++++|||.|.         .++...   +.+.+.++   ++++||..|+..|...+.+... +.+.    ...+...|.
T Consensus        99 d~~~I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PE  175 (444)
T 3vtf_A           99 DATFIAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPE  175 (444)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCC
T ss_pred             CceEEEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcc
Confidence            99999998653         233333   44445554   6889999999999888776543 3332    234455666


Q ss_pred             CCCCCcC----CCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018303          191 SGSKKPA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGL  266 (358)
Q Consensus       191 ~~~~~~~----~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~  266 (358)
                      +-.+-..    ....-+++.+++++..+.+..+++.+....+. .++..+++.|++.|.+....++.++|...+|++.|+
T Consensus       176 rl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~Gi  254 (444)
T 3vtf_A          176 FLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLV-MKPREAELVKYASNVFLALKISFANEVGLLAKRLGV  254 (444)
T ss_dssp             CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEE-echhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5444221    11122233345777888888998888765554 456779999999999999999999999999999999


Q ss_pred             CHHHHHHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303          267 DPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK  338 (358)
Q Consensus       267 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~  338 (358)
                      |..++.+.+....           ++...-+.|  |+..-.+.||..++...++++|++.+++++++++.+...
T Consensus       255 Dv~eV~~a~~~d~-----------rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~~  317 (444)
T 3vtf_A          255 DTYRVFEAVGLDK-----------RIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMP  317 (444)
T ss_dssp             CHHHHHHHHHTST-----------TSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhccCC-----------CCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHHH
Confidence            9999999887532           222112233  345567899999999999999999999999888776543

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.87  E-value=1.1e-21  Score=182.08  Aligned_cols=269  Identities=11%  Similarity=0.050  Sum_probs=183.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcC--CccchhhHHhCCC-----------ccCC--CHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR--TKSKCDPLISLGA-----------KYQP--SPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~--~~~~~~~~~~~g~-----------~~~~--~~~~~~~~aDivi~~vp  135 (358)
                      |+|+|||+|.||..+|..|.+.|++|.+|+|  ++++.+.+.+.+.           ...+  ++.++++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            5899999999999999999999999999999  8887777766553           3344  67788899999999997


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCC----hhHHHHHHHHHHhc-CC----eEecCCCCCCCCcCCCCc--eEE
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD----GDTSKLINGHIKAT-GA----SFLEAPVSGSKKPAEDGQ--LIF  204 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~----~~~~~~l~~~l~~~-~~----~~~~~~~~~~~~~~~~~~--~~~  204 (358)
                       +..++.++   +++.+ +++++++|+++++.    +...+.+.+.+.+. +.    .+...|....  ....+.  ..+
T Consensus        81 -~~~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~--~~~~g~~~~~~  153 (335)
T 1txg_A           81 -TDGVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAR--EVAKRMPTTVV  153 (335)
T ss_dssp             -GGGHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHH--HHHTTCCEEEE
T ss_pred             -hHHHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHH--HHHccCCcEEE
Confidence             66888888   77878 88999999998664    23334566666542 22    1222222211  111122  334


Q ss_pred             EecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHH-----------------HH-----HHHHHHHHHHHHHHHHHHHH
Q 018303          205 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK-----------------LV-----VNMIMGSMMATFSEGLLHSE  262 (358)
Q Consensus       205 ~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k-----------------~~-----~n~~~~~~~~~~~Ea~~l~~  262 (358)
                      +.+.+++..+.++++|+..|.+++..++.....|.|                 +.     .|.....+..++.|+..+++
T Consensus       154 ~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~  233 (335)
T 1txg_A          154 FSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIE  233 (335)
T ss_dssp             EECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            445578889999999999998888888876677764                 44     55566677889999999999


Q ss_pred             HcCCCHHHHH------HHHhhccccchhhhccccccccCCCCC-------C--C-chhhHHHHHHHHHHHHHhcCCCchH
Q 018303          263 KVGLDPNVLV------EVVSQGAISAPMYSLKGPSMIESLYPT-------A--F-PLKHQQKDLRLALGLAESVSQSTPI  326 (358)
Q Consensus       263 ~~G~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~-------~--~-~~~~~~kd~~~~~~~a~~~gi~~p~  326 (358)
                      +.|++++++.      +.+..... +... .....+. ..++.       +  + ......+|++.++++++++|+++|+
T Consensus       234 ~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~  310 (335)
T 1txg_A          234 ILGGDRETAFGLSGFGDLIATFRG-GRNG-MLGELLG-KGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKL  310 (335)
T ss_dssp             HHTSCGGGGGSTTTHHHHHHTTTC-HHHH-HHHHHHH-TTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHCCCcchhhcccchhheeecccc-CccH-HHHHHHh-CCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcH
Confidence            9999987654      33433221 1100 0000010 01110       0  0 1234469999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          327 AAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       327 ~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +++++++++.       ..+...+++.+-.
T Consensus       311 ~~~~~~~~~~-------~~~~~~~~~~l~~  333 (335)
T 1txg_A          311 LDSIYRVLYE-------GLKVEEVLFELAT  333 (335)
T ss_dssp             HHHHHHHHHS-------CCCHHHHHHHHHT
T ss_pred             HHHHHHHHhC-------CCCHHHHHHHHHc
Confidence            9999888753       2255555555443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.87  E-value=5e-22  Score=184.57  Aligned_cols=253  Identities=14%  Similarity=0.129  Sum_probs=171.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC-----------CccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-----------AKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      .+||+|||+|+||+.+|..|.+.|++|.+|+|++++.+.+.+.|           +..++++.+ ++.+|+|++++| +.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence            36999999999999999999999999999999988888777655           355667888 889999999997 78


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhc-C--CeEecCCCCCCCCcCCCCce-EEEecCCHhHH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-G--ASFLEAPVSGSKKPAEDGQL-IFLAAGDKSLY  213 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~  213 (358)
                      +++.++   .++.+   +++++|+++++ .+...+.+.+.+.+. +  ..+...|.....  ...+.. .+..++++  .
T Consensus        92 ~~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~--~~~g~~~~~~~g~~~--~  161 (335)
T 1z82_A           92 YIREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEE--VAKKLPTAVTLAGEN--S  161 (335)
T ss_dssp             GHHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHH--HHTTCCEEEEEEETT--H
T ss_pred             HHHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHH--HhCCCceEEEEEehh--H
Confidence            999998   55544   78999999865 333333444444332 1  223334433221  112332 23333333  7


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM-----------------IMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~-----------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +.++++|+..|..++..++.-...|.|++.|.                 ....+..++.|+..++++.|++++.+.++..
T Consensus       162 ~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~  241 (335)
T 1z82_A          162 KELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAG  241 (335)
T ss_dssp             HHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTT
T ss_pred             HHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhccccc
Confidence            88999999999888888775445665555443                 4455678999999999999999987755311


Q ss_pred             hc----cccchhhhcc--ccccccCCCCC------CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018303          277 QG----AISAPMYSLK--GPSMIESLYPT------AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       277 ~~----~~~s~~~~~~--~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      .+    +..++..+++  .+.+..+ ...      .+......+|++.++++++++|+++|+++++.++++
T Consensus       242 ~~~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~  311 (335)
T 1z82_A          242 IGDLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY  311 (335)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             ccceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh
Confidence            00    0112222211  1112211 110      122335679999999999999999999999988874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.87  E-value=1.1e-22  Score=180.64  Aligned_cols=180  Identities=19%  Similarity=0.227  Sum_probs=136.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--------------hhhHHh-CCCccCCCHHHHhhcCCEEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--------------CDPLIS-LGAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--------------~~~~~~-~g~~~~~~~~~~~~~aDivi  131 (358)
                      ++..++|||||+|+||+.+|+.|.+.|++|++|||++++              .+.+.+ .+.....++.+++++||+||
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVi   95 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVV   95 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEE
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEE
Confidence            567789999999999999999999999999999999876              333332 24455678899999999999


Q ss_pred             EeeCChhhHhhhhcccccc-cccCCCCCEEEEccCC-----------Chh----HHHHHHHHHHh----cCCeEecCCCC
Q 018303          132 AMLADPESAMDVACGKHGA-ASGMGPGKGYVDVSTV-----------DGD----TSKLINGHIKA----TGASFLEAPVS  191 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~-~~~l~~~~~vi~~s~~-----------~~~----~~~~l~~~l~~----~~~~~~~~~~~  191 (358)
                      +|+| +.....++   .++ .+.+ ++++|||++.+           .+.    ..+.+.+.+..    +++.++++|++
T Consensus        96 lavp-~~~~~~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~  170 (245)
T 3dtt_A           96 NATE-GASSIAAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLM  170 (245)
T ss_dssp             ECSC-GGGHHHHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHH
T ss_pred             EccC-cHHHHHHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHh
Confidence            9997 55556666   444 4445 89999999943           222    22344444332    25667788888


Q ss_pred             CCCCcCCCCceEEEe-cCCHhHHHHHHHHHHHhcCC-eEEeCCcChHHHHHHHHHHHHHHHH
Q 018303          192 GSKKPAEDGQLIFLA-AGDKSLYNTVAPLLDIMGKS-RFYLGDVGNGAAMKLVVNMIMGSMM  251 (358)
Q Consensus       192 ~~~~~~~~~~~~~~~-~g~~~~~~~v~~ll~~~g~~-~~~~g~~g~~~~~k~~~n~~~~~~~  251 (358)
                      +++.....+++.+++ +++++.++.++++|+.+|+. ++++|+.+.+..+|++.|++.....
T Consensus       171 ~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~  232 (245)
T 3dtt_A          171 VDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWG  232 (245)
T ss_dssp             HCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred             cCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHH
Confidence            877666566665565 45689999999999999975 6899999999999999999988773

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.87  E-value=1.7e-22  Score=186.10  Aligned_cols=254  Identities=12%  Similarity=0.092  Sum_probs=170.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-----C-CcEEEEcCCccchhhHHh-CCCccCC-------------CHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-----G-CDVTVWNRTKSKCDPLIS-LGAKYQP-------------SPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-----g-~~V~~~~~~~~~~~~~~~-~g~~~~~-------------~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.||..+|..|.+.     | ++|++|+| +++.+.+.+ .|+....             +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            6999999999999999999998     9 99999999 777777776 5654332             333557889999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCCCCC--CcCCCCceEE
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSK--KPAEDGQLIF  204 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~--~~~~~~~~~~  204 (358)
                      |+++| +..++.++   +++.+.++++++||+++++.. ..+.+.+.+.+.    ++.++++++.+..  .....+...+
T Consensus        88 il~vk-~~~~~~v~---~~i~~~l~~~~~iv~~~nG~~-~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~  162 (317)
T 2qyt_A           88 LFCTK-DYDMERGV---AEIRPMIGQNTKILPLLNGAD-IAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFY  162 (317)
T ss_dssp             EECCS-SSCHHHHH---HHHGGGEEEEEEEEECSCSSS-HHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEecC-cccHHHHH---HHHHhhcCCCCEEEEccCCCC-cHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEE
Confidence            99996 56678888   777777888999999877643 334555555432    2233444443211  1112233332


Q ss_pred             Eec----CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Q 018303          205 LAA----GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-------------------MMATFSEGLLHS  261 (358)
Q Consensus       205 ~~~----g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~-------------------~~~~~~Ea~~l~  261 (358)
                      +..    ++++.. .+.++|+..|..+++.++.+...|.|++.|...+.                   +..++.|+..++
T Consensus       163 ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~  241 (317)
T 2qyt_A          163 FGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELF  241 (317)
T ss_dssp             EECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321    246666 89999999999999999999999999999987653                   448999999999


Q ss_pred             HHcCCCHH--HHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018303          262 EKVGLDPN--VLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  336 (358)
Q Consensus       262 ~~~G~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~  336 (358)
                      ++.|++++  .+.+.+....   +......++|.. |+..++..+.. ..++.++++++++|+++|+++.++++++.
T Consensus       242 ~a~G~~~~~~~~~~~~~~~~---~~~~~~~~sm~~-d~~~g~~~E~~-~~~g~~~~~a~~~gv~~P~~~~~~~~~~~  313 (317)
T 2qyt_A          242 RAKYGQVPDDVVQQLLDKQR---KMPPESTSSMHS-DFLQGGSTEVE-TLTGYVVREAEALRVDLPMYKRMYRELVS  313 (317)
T ss_dssp             HHHTSCCCSSHHHHHHHHHH---HC---------------------C-TTTHHHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred             HHcCCCCChHHHHHHHHHHh---ccCCCCCChHHH-HHHcCCccCHH-HHhhHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999864  5556555421   111122334443 45444432221 12789999999999999999999887753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.87  E-value=2.2e-21  Score=181.53  Aligned_cols=261  Identities=10%  Similarity=0.033  Sum_probs=177.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCC-------CcEEEEcCCcc-----chhhHHhC--------------CCccCCCHH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPD  121 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~-----~~~~~~~~--------------g~~~~~~~~  121 (358)
                      +..|+|+|||+|.||..+|..|+..|       ++|.+|+|+++     ..+.+.+.              ++....++.
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV   85 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence            34569999999999999999999988       99999999987     55555431              123456788


Q ss_pred             HHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh-------HHHHHHHHHHhcCCeEecCCCCCCC
Q 018303          122 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGSK  194 (358)
Q Consensus       122 ~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~  194 (358)
                      ++++++|+|++++| +..++.++   +++.+.+++++++|+++++...       ..+.+.+.+. ....+...|.+...
T Consensus        86 ~~~~~aD~Vilav~-~~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~~  160 (354)
T 1x0v_A           86 QAAEDADILIFVVP-HQFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANIASE  160 (354)
T ss_dssp             HHHTTCSEEEECCC-GGGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCCHHH
T ss_pred             HHHcCCCEEEEeCC-HHHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCcHHH
Confidence            88899999999997 67888888   7787888999999999876431       1222333231 11233334433211


Q ss_pred             CcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH-----------------HHHHHHHHHHHHHHH
Q 018303          195 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------VNMIMGSMMATFSEG  257 (358)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~-----------------~n~~~~~~~~~~~Ea  257 (358)
                      ..........+.+++++..+.++++|+..|.+++..++.....|.|++                 .|.....+..++.|+
T Consensus       161 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~  240 (354)
T 1x0v_A          161 VADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM  240 (354)
T ss_dssp             HHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            111111233445567888899999999999988888886557787776                 455566778999999


Q ss_pred             HHHHHHcCC---CHHHHHH------HHhhccccchhhhccccccccCCCCC--------CCchhhHHHHHHHHHHHHHhc
Q 018303          258 LLHSEKVGL---DPNVLVE------VVSQGAISAPMYSLKGPSMIESLYPT--------AFPLKHQQKDLRLALGLAESV  320 (358)
Q Consensus       258 ~~l~~~~G~---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~kd~~~~~~~a~~~  320 (358)
                      ..++++.|+   +++++.+      .+..+.. +... ...+.+....+..        .+......+|++.++++++++
T Consensus       241 ~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~  318 (354)
T 1x0v_A          241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNR-KVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHK  318 (354)
T ss_dssp             HHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHH-HHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcccccccchHHHHHHhhcc-cccH-HHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHh
Confidence            999999999   8766532      2222111 1100 0112222101110        123345679999999999999


Q ss_pred             CC--CchHHHHHHHHHH
Q 018303          321 SQ--STPIAAAANELYK  335 (358)
Q Consensus       321 gi--~~p~~~a~~~~~~  335 (358)
                      |+  ++|++++++++++
T Consensus       319 gv~~~~P~~~~v~~~~~  335 (354)
T 1x0v_A          319 GLVDKFPLFMAVYKVCY  335 (354)
T ss_dssp             TCGGGSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            99  9999999988875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.87  E-value=1.4e-22  Score=190.62  Aligned_cols=261  Identities=13%  Similarity=0.088  Sum_probs=176.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC--------------CccCCCHHHHhhcCCEEEEeeCCh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      +|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+.+              +....++.++++++|+||+++| +
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~-~   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP-T   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCC-H
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCC-h
Confidence            899999999999999999999999999999988777766532              3345678888999999999997 6


Q ss_pred             hhHhhhhccccc----ccccCCC-CCEEEEccCCC-hhHHHHHHHHHHhc-C---CeEecCCCCCCCCcCCCCceEEEec
Q 018303          138 ESAMDVACGKHG----AASGMGP-GKGYVDVSTVD-GDTSKLINGHIKAT-G---ASFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       138 ~~~~~~~~~~~~----~~~~l~~-~~~vi~~s~~~-~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                      ..++.++   .+    +.+.+++ ++++|+++++. +...+.+.+.+.+. +   ..+...|.+............++.+
T Consensus        96 ~~~~~v~---~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~  172 (366)
T 1evy_A           96 QFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIAS  172 (366)
T ss_dssp             HHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHH---HHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEec
Confidence            8888888   55    6667778 99999998653 32222334444332 2   2233344332211111222334455


Q ss_pred             CCHhHHHHHHHHHHHh--cCCeEEeCCcChHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCCCH
Q 018303          208 GDKSLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVV-----------------NMIMGSMMATFSEGLLHSEKVGLDP  268 (358)
Q Consensus       208 g~~~~~~~v~~ll~~~--g~~~~~~g~~g~~~~~k~~~-----------------n~~~~~~~~~~~Ea~~l~~~~G~~~  268 (358)
                      ++++..+.++++|+..  +.+++..++.....|.|++.                 |.+...+..++.|+..++++.|+++
T Consensus       173 ~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~  252 (366)
T 1evy_A          173 ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDG  252 (366)
T ss_dssp             SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            6788899999999999  88887888755466666654                 4455667789999999999999998


Q ss_pred             HHHHHHHhhc----cccchhhhcc--ccccccCC-CC----CCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018303          269 NVLVEVVSQG----AISAPMYSLK--GPSMIESL-YP----TAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV  336 (358)
Q Consensus       269 ~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~-~~----~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~  336 (358)
                      +++.++...+    ...++..+++  ...+..+. +.    ..+......+|++.++++++++|+++|++++++++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~  331 (366)
T 1evy_A          253 SAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK  331 (366)
T ss_dssp             TTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred             ccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence            7654321100    0112222211  11122110 00    01223356799999999999999999999999888764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.87  E-value=3.9e-21  Score=181.24  Aligned_cols=258  Identities=11%  Similarity=0.069  Sum_probs=178.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-------CcEEEEcCCcc-----chhhHHhC--------------CCccCCCHHHHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKS-----KCDPLISL--------------GAKYQPSPDEVA  124 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~-----~~~~~~~~--------------g~~~~~~~~~~~  124 (358)
                      |+|+|||+|.||..+|..|++.|       ++|.+|+|+++     +.+.+.+.              ++..++++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            58999999999999999999988       99999999987     66665442              234456788888


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccc----cCCCCCEEEEccCCChh---HHHHHHHHHHh---cCCeEecCCCCCCC
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAAS----GMGPGKGYVDVSTVDGD---TSKLINGHIKA---TGASFLEAPVSGSK  194 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~----~l~~~~~vi~~s~~~~~---~~~~l~~~l~~---~~~~~~~~~~~~~~  194 (358)
                      +++|+||+++| +..++.++   +++.+    .+++++++|+++++...   ..+.+.+.+.+   ....+...|.+...
T Consensus       102 ~~aDvVilav~-~~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~  177 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMD  177 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHH
T ss_pred             cCCCEEEEcCC-HHHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHH
Confidence            99999999997 78899998   77777    78899999999876432   11223333322   12233334433221


Q ss_pred             CcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHH-----------------HHHHHHHHHHHHHH
Q 018303          195 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV-----------------NMIMGSMMATFSEG  257 (358)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~-----------------n~~~~~~~~~~~Ea  257 (358)
                      .........++.+++++..+.++++|+..+.+++..++.....|.|++.                 |.....+..++.|+
T Consensus       178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~  257 (375)
T 1yj8_A          178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM  257 (375)
T ss_dssp             HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence            1111223344556688889999999999999998888865567776654                 44666778999999


Q ss_pred             HHHHHHc--CCCHHHHHH------HHhhccc-cchhhhcccccccc-CC-CC--C------CCchhhHHHHHHHHHHHHH
Q 018303          258 LLHSEKV--GLDPNVLVE------VVSQGAI-SAPMYSLKGPSMIE-SL-YP--T------AFPLKHQQKDLRLALGLAE  318 (358)
Q Consensus       258 ~~l~~~~--G~~~~~~~~------~~~~~~~-~s~~~~~~~~~~~~-~~-~~--~------~~~~~~~~kd~~~~~~~a~  318 (358)
                      ..++++.  |++++++.+      ++..+.. .+..+   +..+.. ++ ++  .      .+......+|++.++++++
T Consensus       258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~---~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~  334 (375)
T 1yj8_A          258 ILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKC---SAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIK  334 (375)
T ss_dssp             HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHH---HHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcchhhccccccceeEeeeCCccHHH---HHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHH
Confidence            9999999  698876643      2222221 11111   112221 10 11  0      0234566899999999999


Q ss_pred             hcCC--CchHHHHHHHHHH
Q 018303          319 SVSQ--STPIAAAANELYK  335 (358)
Q Consensus       319 ~~gi--~~p~~~a~~~~~~  335 (358)
                      ++|+  ++|+++++++++.
T Consensus       335 ~~gv~~~~P~~~~v~~~~~  353 (375)
T 1yj8_A          335 EKNMTNEFPLFTVLHKISF  353 (375)
T ss_dssp             HTTCGGGCHHHHHHHHHHH
T ss_pred             HhCCCCCCCHHHHHHHHHh
Confidence            9999  9999999988875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.86  E-value=3.2e-21  Score=173.31  Aligned_cols=203  Identities=16%  Similarity=0.183  Sum_probs=154.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+|+|+|||+|.||+.+++.|...|++ |.+|||++++.+.+.+. |+....+++++++++|+|++++| +...+.++  
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~-~~~~~~v~--   85 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLK-DSAFAELL--   85 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCC-HHHHHHHH--
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecC-HHHHHHHH--
Confidence            357999999999999999999999999 89999999888777664 77777889899999999999997 45678888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~  226 (358)
                       +++.+.+++++++++++++.+.+.  +.+.+...+..+..+|+.+.+.........++.+++++..+.++++++.+|.+
T Consensus        86 -~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~g~~  162 (266)
T 3d1l_A           86 -QGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNR  162 (266)
T ss_dssp             -HHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHHTTCSC
T ss_pred             -HHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHHhcCCc
Confidence             777778889999999999877543  44444332334455565553332222333344477899999999999999999


Q ss_pred             eEEeCCcC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303          227 RFYLGDVG---NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS  281 (358)
Q Consensus       227 ~~~~g~~g---~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  281 (358)
                      ++.+++.+   .+.+.|+++|...  .+..+.|+  ++++.|++++++.+++.++...
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~  216 (266)
T 3d1l_A          163 VYDADSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARK  216 (266)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHH
Confidence            99998754   5688889988743  24456675  5689999999999988876433

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.85  E-value=2.9e-21  Score=174.60  Aligned_cols=187  Identities=14%  Similarity=0.172  Sum_probs=144.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------CCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ..++|||||+|.||..||..++ .|++|++||++++..+...+.       ++...+++++ +++||+||.|+|.+.+++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk   88 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK   88 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence            4579999999999999999999 999999999999888777665       5666778876 789999999999999998


Q ss_pred             hhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHH----hcCCeEecCCCCCCCCcCCCCceEEEecC---CHhHH
Q 018303          142 DVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIK----ATGASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLY  213 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~  213 (358)
                      ..+|+  + +..+ ++++++ |+|+.++..   +.+.+.    ..|++|++ |+..       .+++.++.+   +++.+
T Consensus        89 ~~l~~--~-l~~~-~~~IlasntSti~~~~---~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~  153 (293)
T 1zej_A           89 VEVLR--E-VERL-TNAPLCSNTSVISVDD---IAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTV  153 (293)
T ss_dssp             HHHHH--H-HHTT-CCSCEEECCSSSCHHH---HHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHH
T ss_pred             HHHHH--H-HhcC-CCCEEEEECCCcCHHH---HHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHH
Confidence            88853  3 3455 898885 777776653   333222    12566666 3322       334444443   89999


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP  283 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~  283 (358)
                      +++.++++.+|+.++++++.      +++++.+.    .+++|++.++++ |++++++++++..+.+.++
T Consensus       154 ~~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~  212 (293)
T 1zej_A          154 AFVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY  212 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence            99999999999999999865      66666655    457899999999 8899999999997765544

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.85  E-value=8.5e-23  Score=189.73  Aligned_cols=153  Identities=12%  Similarity=0.083  Sum_probs=129.9

Q ss_pred             eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303            2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM   81 (358)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i   81 (358)
                      ++...|+|+..  +++|+++++++++.|+.         +       .                 ++.+++|||||+|+|
T Consensus        86 ~v~n~pg~~~~--~VAE~~l~~lL~l~r~~---------g-------~-----------------~l~gktvGIIGlG~I  130 (381)
T 3oet_A           86 GFSAAPGCNAI--AVVEYVFSALLMLAERD---------G-------F-----------------SLRDRTIGIVGVGNV  130 (381)
T ss_dssp             EEECCTTTTHH--HHHHHHHHHHHHHHHHT---------T-------C-----------------CGGGCEEEEECCSHH
T ss_pred             EEEECCCcCcc--hhHHHHHHHHHHHHHhc---------C-------C-----------------ccCCCEEEEEeECHH
Confidence            34556788887  88889998888887752         0       1                 456679999999999


Q ss_pred             HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhh----HhhhhcccccccccCCCC
Q 018303           82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPG  157 (358)
Q Consensus        82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~----~~~~~~~~~~~~~~l~~~  157 (358)
                      |+.+|++++.+|++|++||++.+...    . .....++++++++||+|++|+|.+++    |++++  +++.++.|++|
T Consensus       131 G~~vA~~l~a~G~~V~~~d~~~~~~~----~-~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li--~~~~l~~mk~g  203 (381)
T 3oet_A          131 GSRLQTRLEALGIRTLLCDPPRAARG----D-EGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLA--DETLIRRLKPG  203 (381)
T ss_dssp             HHHHHHHHHHTTCEEEEECHHHHHTT----C-CSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSB--CHHHHHHSCTT
T ss_pred             HHHHHHHHHHCCCEEEEECCChHHhc----c-CcccCCHHHHHhhCCEEEEcCcCCccccccchhhc--CHHHHhcCCCC
Confidence            99999999999999999998543211    2 23456899999999999999999999    99999  78899999999


Q ss_pred             CEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303          158 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       158 ~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      +++||++|+.++++++|.++++++++.....+++..+|.
T Consensus       204 ailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~  242 (381)
T 3oet_A          204 AILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPD  242 (381)
T ss_dssp             EEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS
T ss_pred             cEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCC
Confidence            999999999999999999999999998888888887764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.84  E-value=5.5e-20  Score=166.28  Aligned_cols=252  Identities=17%  Similarity=0.162  Sum_probs=177.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC---cEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|||+|+||..+++.|...|+   +|.+|||++++.+.+.+. |+....+..++++++|+||+++| +..++.++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHH-
Confidence            4689999999999999999999998   999999999988888775 88888899999999999999996 78888888 


Q ss_pred             cccccccc-CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHH
Q 018303          146 GKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLD  221 (358)
Q Consensus       146 ~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~  221 (358)
                        +++.+. +++++++|+++.+-..  +.+.+.+.. +..++.. |.  .+.....+...+..+  .+++..+.++++|+
T Consensus        81 --~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~  153 (280)
T 3tri_A           81 --EELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRAMPN--TPSSVRAGATGLFANETVDKDQKNLAESIMR  153 (280)
T ss_dssp             --HHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHHHHHHHG
T ss_pred             --HHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHHHHHHHHHH
Confidence              777777 7888899987666553  456666643 2334332 32  222222232222223  26889999999999


Q ss_pred             HhcCCeEEeC-CcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch-hhhc--ccccccc-
Q 018303          222 IMGKSRFYLG-DVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP-MYSL--KGPSMIE-  294 (358)
Q Consensus       222 ~~g~~~~~~g-~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~--~~~~~~~-  294 (358)
                      .+|. ++.+. +........+.  .+.+.+.++.++.|+   +.+.|++++++.+++.++...+. +...  ..|..+. 
T Consensus       154 ~iG~-~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~  229 (280)
T 3tri_A          154 AVGL-VIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQ  229 (280)
T ss_dssp             GGEE-EEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HCCC-eEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            9997 44553 33333333332  245555556555565   47899999999999988644332 2221  1233332 


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          295 SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       295 ~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      .-.+||.++..       .++..++.|++..+.+++.+..+++.+.|
T Consensus       230 ~v~spgGtT~~-------~l~~le~~g~~~~~~~av~aa~~r~~el~  269 (280)
T 3tri_A          230 FVTSPGGTTEQ-------AIKVLESGNLRELFIKALTAAVNRAKELS  269 (280)
T ss_dssp             HHCCTTSHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            22356655444       45677899999999999999999998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.83  E-value=1.3e-19  Score=162.39  Aligned_cols=242  Identities=14%  Similarity=0.169  Sum_probs=167.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .|+|+|||+|+||+.+++.|...|    ++|.+|||++++      .|+....++.++++++|+|++|+| +..++.++ 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~-   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVL-   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHH-
Confidence            468999999999999999999988    799999998876      467777789899999999999998 67888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEe-cCCCCCCCCcCCCCceEEEecC---CHhHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFL-EAPVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPL  219 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~l  219 (358)
                        +++.+.+ ++.++|..+++...  +.+.+.+...  .+.++ +.|..     ...+ ..+++.+   +++.++.++++
T Consensus        76 --~~l~~~l-~~~~vv~~~~gi~~--~~l~~~~~~~~~~v~~~p~~p~~-----~~~g-~~~~~~~~~~~~~~~~~~~~l  144 (262)
T 2rcy_A           76 --NNIKPYL-SSKLLISICGGLNI--GKLEEMVGSENKIVWVMPNTPCL-----VGEG-SFIYCSNKNVNSTDKKYVNDI  144 (262)
T ss_dssp             --HHSGGGC-TTCEEEECCSSCCH--HHHHHHHCTTSEEEEEECCGGGG-----GTCE-EEEEEECTTCCHHHHHHHHHH
T ss_pred             --HHHHHhc-CCCEEEEECCCCCH--HHHHHHhCCCCcEEEECCChHHH-----HcCC-eEEEEeCCCCCHHHHHHHHHH
Confidence              6777777 56656555444333  2455555432  12233 22222     2234 4444444   68889999999


Q ss_pred             HHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhh---cccccccc
Q 018303          220 LDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS---LKGPSMIE  294 (358)
Q Consensus       220 l~~~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~  294 (358)
                      |+.+|. ++++++.......++.  .|.+...+...+.|+   +++.|++++.+.+++..+...+..+.   ...+.++.
T Consensus       145 l~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (262)
T 2rcy_A          145 FNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLK  220 (262)
T ss_dssp             HHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            999997 8888875555555553  344444444444444   58899999999888887544333222   33456666


Q ss_pred             CCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          295 SLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       295 ~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      +.+ .++++....       ++..++.|++.++.+++.+.++++.+.+
T Consensus       221 d~~~~~~~t~~~~-------l~~l~~~~~~~~~~~a~~~~~~r~~~~~  261 (262)
T 2rcy_A          221 DNIVSPGGITAVG-------LYSLEKNSFKYTVMNAVEAACEKSKAMG  261 (262)
T ss_dssp             HHHCCTTSHHHHH-------HHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCChHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            554 455554443       3444677999999999999999988753

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.83  E-value=4.4e-19  Score=157.57  Aligned_cols=224  Identities=11%  Similarity=0.143  Sum_probs=145.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      |+|+|||+|+||..+++.|.+.|+    +|.+|||++++.+.+.+ .|+....++.++++++|+|++|+| +..++.++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence            689999999999999999999998    99999999988887765 488888899999999999999995 78889998 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI  222 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~  222 (358)
                        +++.+.+++++++|+++.+...  +.+.+.+.. +..++.. |  ..+.....+...++.+  ++++.++.++++|+.
T Consensus        81 --~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~~-~~~~v~~~p--~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  153 (247)
T 3gt0_A           81 --NEIKEIIKNDAIIVTIAAGKSI--ESTENAFNK-KVKVVRVMP--NTPALVGEGMSALCPNEMVTEKDLEDVLNIFNS  153 (247)
T ss_dssp             -----CCSSCTTCEEEECSCCSCH--HHHHHHHCS-CCEEEEEEC--CGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGG
T ss_pred             --HHHHhhcCCCCEEEEecCCCCH--HHHHHHhCC-CCcEEEEeC--ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence              7888888999999976655443  345555532 2333322 2  1122222233444432  588999999999999


Q ss_pred             hcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhccccchhhh-c--cccccccCCC-
Q 018303          223 MGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLH-SEKVGLDPNVLVEVVSQGAISAPMYS-L--KGPSMIESLY-  297 (358)
Q Consensus       223 ~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l-~~~~G~~~~~~~~~~~~~~~~s~~~~-~--~~~~~~~~~~-  297 (358)
                      +|. ++.+++........+....  ...+..+.|++.. +.+.|++++.+.+++.++...++.+- .  ..|..+.+.. 
T Consensus       154 ~G~-~~~~~e~~~d~~~a~~g~g--pa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~  230 (247)
T 3gt0_A          154 FGQ-TEIVSEKLMDVVTSVSGSS--PAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVC  230 (247)
T ss_dssp             GEE-EEECCGGGHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred             CCC-EEEeCHHHccHHHHHhccH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcC
Confidence            998 6666654433333333221  2233455566666 78999999999999998766555432 1  2344444333 


Q ss_pred             CCCCchhhH
Q 018303          298 PTAFPLKHQ  306 (358)
Q Consensus       298 ~~~~~~~~~  306 (358)
                      +|+.+....
T Consensus       231 spgG~t~~g  239 (247)
T 3gt0_A          231 SPGGTTIEA  239 (247)
T ss_dssp             ---------
T ss_pred             CCCchHHHH
Confidence            666654443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.82  E-value=5.1e-20  Score=167.21  Aligned_cols=201  Identities=14%  Similarity=0.177  Sum_probs=156.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      .|+|+|||+ |.||+.+++.|...|++|.+|||++++.+.+.+.|+... +..++++++|+||+++| +..++.++   +
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~-~~~~~~v~---~   85 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALP-DNIIEKVA---E   85 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSC-HHHHHHHH---H
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCC-chHHHHHH---H
Confidence            369999999 999999999999999999999999888777776666543 67788899999999997 56688888   7


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCC------CcCCCCc-------eE--EEecCCHhH
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSK------KPAEDGQ-------LI--FLAAGDKSL  212 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~------~~~~~~~-------~~--~~~~g~~~~  212 (358)
                      ++.+.++++++||+++++.+..  .+.+ + ..+..++ .+|+++.+      +....+.       ..  +..+++++.
T Consensus        86 ~l~~~l~~~~ivv~~s~~~~~~--~l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~  161 (286)
T 3c24_A           86 DIVPRVRPGTIVLILDAAAPYA--GVMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEH  161 (286)
T ss_dssp             HHGGGSCTTCEEEESCSHHHHH--TCSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHH
T ss_pred             HHHHhCCCCCEEEECCCCchhH--HHHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHH
Confidence            7888889999999988776432  2333 2 2356777 77887665      2233341       22  224578889


Q ss_pred             HHHHHHHHHHhcC---CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHhhcc
Q 018303          213 YNTVAPLLDIMGK---SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       213 ~~~v~~ll~~~g~---~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~~~~~~~~~~  279 (358)
                      .+.++++++.+|.   +++.+++.+.+.+.+.+.|......+..+.|++..+ .+.|++++.+.+++..+.
T Consensus       162 ~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~  232 (286)
T 3c24_A          162 YAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL  232 (286)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999   789998777666658888877777778888877664 456999999999888653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.82  E-value=5.3e-19  Score=162.23  Aligned_cols=176  Identities=16%  Similarity=0.219  Sum_probs=141.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCC--ccCCCHHH-HhhcCCEEEEeeCChhhHhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDE-VAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~--~~~~~~~~-~~~~aDivi~~vp~~~~~~~  142 (358)
                      +..++|||||+|.||..+|+.|.+.|+  +|.+|||++++.+.+.+.|+  ....++++ ++++||+||+|+| +..+..
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~  109 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFRE  109 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSC-GGGHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCC-HHHHHH
Confidence            445799999999999999999999999  99999999988887777776  34567888 8999999999997 567788


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc----C----CCCceEEEec---CCH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP----A----EDGQLIFLAA---GDK  210 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~----~----~~~~~~~~~~---g~~  210 (358)
                      ++   +++.+.++++++|+|+++......+.+.+.+..   .+++ +|+++.+..    .    ..+..++++.   +++
T Consensus       110 vl---~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~  183 (314)
T 3ggo_A          110 IA---KKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDK  183 (314)
T ss_dssp             HH---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCH
T ss_pred             HH---HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCH
Confidence            88   788888999999999999887777777777654   5666 577765421    1    1455666653   478


Q ss_pred             hHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH
Q 018303          211 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM  250 (358)
Q Consensus       211 ~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~  250 (358)
                      +.++.++++++.+|.+++.+++........+++..-....
T Consensus       184 ~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a  223 (314)
T 3ggo_A          184 KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVA  223 (314)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888887765544433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.82  E-value=2.8e-19  Score=165.96  Aligned_cols=254  Identities=19%  Similarity=0.169  Sum_probs=173.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .|+|+|||+|.||..+|..|++.|++|.+|+|+ +..+.+.+.|..             ..+++++ ++.+|+|++++| 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk-   79 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVK-   79 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCC-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCC-
Confidence            479999999999999999999999999999996 555666655532             2356666 588999999996 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCCh------------------hHHHHHHHHHHhcCCe----EecCCCCCCC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDG------------------DTSKLINGHIKATGAS----FLEAPVSGSK  194 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~------------------~~~~~l~~~l~~~~~~----~~~~~~~~~~  194 (358)
                      +.+++.++   +++.+.++++++||.+.+|-+                  ...+.+.+.+....+.    +..+...+..
T Consensus        80 ~~~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg  156 (335)
T 3ghy_A           80 APALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG  156 (335)
T ss_dssp             HHHHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred             chhHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence            68899999   888888999999999988842                  2334566665443211    1111111111


Q ss_pred             --CcCCCCceEEEe--cCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHH---------------------HHH
Q 018303          195 --KPAEDGQLIFLA--AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI---------------------MGS  249 (358)
Q Consensus       195 --~~~~~~~~~~~~--~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~---------------------~~~  249 (358)
                        .....+...+-.  +.+.+..+.+.++|+..+.++....+.....|.|++.|..                     ...
T Consensus       157 ~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l  236 (335)
T 3ghy_A          157 HIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAF  236 (335)
T ss_dssp             EEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHH
T ss_pred             EEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHH
Confidence              111122222211  1245677889999999999998888877799999876543                     234


Q ss_pred             HHHHHHHHHHHHHHcCCCHH----HHHHHHhhccccchhhhccccccccCCCCCCC---chhhHHHHHHHHHHHHHhcCC
Q 018303          250 MMATFSEGLLHSEKVGLDPN----VLVEVVSQGAISAPMYSLKGPSMIESLYPTAF---PLKHQQKDLRLALGLAESVSQ  322 (358)
Q Consensus       250 ~~~~~~Ea~~l~~~~G~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~kd~~~~~~~a~~~gi  322 (358)
                      +..++.|+.+++++.|+++.    .........       ....++|.+ |+..+.   +++.+   ++.++++++++|+
T Consensus       237 ~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~-------~~~~sSM~q-D~~~gr~~tEid~i---~G~vv~~a~~~gv  305 (335)
T 3ghy_A          237 CLAVMAEAKAIGARIGCPIEQSGEARSAVTRQL-------GAFKTSMLQ-DAEAGRGPLEIDAL---VASVREIGLHVGV  305 (335)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTT-------CSCCCTTTC------CCCCCHHHH---THHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCCCccHHHHHHHHhcc-------CCCCcHHHH-HHHcCCCCchHHHH---hhHHHHHHHHhCC
Confidence            56799999999999997642    222222221       112345553 444333   34444   7899999999999


Q ss_pred             CchHHHHHHHHHHHHHHC
Q 018303          323 STPIAAAANELYKVAKSH  340 (358)
Q Consensus       323 ~~p~~~a~~~~~~~a~~~  340 (358)
                      ++|+++.++++++.....
T Consensus       306 ~~P~~~~l~~li~~~e~~  323 (335)
T 3ghy_A          306 PTPQIDTLLGLVRLHAQT  323 (335)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999876654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.81  E-value=1.5e-18  Score=162.38  Aligned_cols=257  Identities=14%  Similarity=0.143  Sum_probs=164.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC--------------ccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--------------KYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--------------~~~~~~~~~~~~aDivi~~v  134 (358)
                      .|+|+|||+|.||..+|..|+..|++|.+++|++++.+.+.+. +.              ....+++++++++|+|++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            3799999999999999999999999999999998887776654 21              24568888889999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC---CeEec---CCCCCCCCcC---C----CCc
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG---ASFLE---APVSGSKKPA---E----DGQ  201 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~---~~~~~---~~~~~~~~~~---~----~~~  201 (358)
                      | +...+.++   +++.+.+++++++|++.+..+.. ..+.+.+...+   +.+++   +|+.+.....   .    .+.
T Consensus        84 ~-~~~~~~~~---~~l~~~l~~~~~vv~~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~  158 (359)
T 1bg6_A           84 P-AIHHASIA---ANIASYISEGQLIILNPGATGGA-LEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA  158 (359)
T ss_dssp             C-GGGHHHHH---HHHGGGCCTTCEEEESSCCSSHH-HHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred             C-chHHHHHH---HHHHHhCCCCCEEEEcCCCchHH-HHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence            7 56678888   77888899999999884423333 23455555543   44543   3443321110   0    011


Q ss_pred             eEEEe---cCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH--------------------------------HHHH
Q 018303          202 LIFLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV--------------------------------VNMI  246 (358)
Q Consensus       202 ~~~~~---~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~--------------------------------~n~~  246 (358)
                      ..+..   +++++..+.++++|..+.    ...+    .|.|++                                .+..
T Consensus       159 ~~~g~~~~~~~~~~~~~l~~~~~~~~----~~~d----i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (359)
T 1bg6_A          159 MDFACLPAAKAGWALEQIGSVLPQYV----AVEN----VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSV  230 (359)
T ss_dssp             EEEEEESGGGHHHHHHHHTTTCTTEE----ECSC----HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHH
T ss_pred             eEEEeccccccHHHHHHHHHHhhhcE----EcCC----hHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHH
Confidence            11111   234445666666664431    1121    122222                                1112


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchh--hhc-cccccccCCCCCCCchh--hHHHHH----HHHHHHH
Q 018303          247 MGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPM--YSL-KGPSMIESLYPTAFPLK--HQQKDL----RLALGLA  317 (358)
Q Consensus       247 ~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~~~~~~~--~~~kd~----~~~~~~a  317 (358)
                      ...+..++.|+..++++.|++++.+.+.+......++.  .+. ..++|.++... ..+++  .+.+|+    +.+++++
T Consensus       231 ~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~-~~e~~~~~~~~D~~~~~g~~~~~a  309 (359)
T 1bg6_A          231 GSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAG-PINLNTRYFFEDVSTGLVPLSELG  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBC-CSSSCCHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCC-CCCCCccceecCcCccHHHHHHHH
Confidence            45567788999999999999987777665543322221  000 12334443321 22345  678887    8999999


Q ss_pred             HhcCCCchHHHHHHHHHHHHHHC
Q 018303          318 ESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       318 ~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      +++|+++|+++.+.++++....+
T Consensus       310 ~~~gv~~P~~~~l~~~~~~~~~~  332 (359)
T 1bg6_A          310 RAVNVPTPLIDAVLDLISSLIDT  332 (359)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCchHHHHHHHHHHHHHCC
Confidence            99999999999999999876654

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.80  E-value=5.8e-21  Score=177.93  Aligned_cols=150  Identities=13%  Similarity=0.084  Sum_probs=126.3

Q ss_pred             eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303            4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT   83 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~   83 (358)
                      ...|+|+..  +++|+++++++++.|+            |.    .                 ++.+++|||||+|+||+
T Consensus        85 ~n~pg~~~~--~vAE~~l~~lL~l~r~------------~~----~-----------------~l~g~tvGIIGlG~IG~  129 (380)
T 2o4c_A           85 SSAPGCNAR--GVVDYVLGCLLAMAEV------------RG----A-----------------DLAERTYGVVGAGQVGG  129 (380)
T ss_dssp             ECCTTTTHH--HHHHHHHHHHHHHHHH------------HT----C-----------------CGGGCEEEEECCSHHHH
T ss_pred             EeCCCcChH--HHHHHHHHHHHHHHhh------------hh----c-----------------ccCCCEEEEEeCCHHHH
Confidence            344677777  8889999999888876            21    1                 45667999999999999


Q ss_pred             HHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhh----HhhhhcccccccccCCCCCE
Q 018303           84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPGKG  159 (358)
Q Consensus        84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~----~~~~~~~~~~~~~~l~~~~~  159 (358)
                      .+|++++.+|++|++||++++..    ..+.. ..++++++++||+|++|+|.+++    +++++  +++.++.|++|++
T Consensus       130 ~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li--~~~~l~~mk~gai  202 (380)
T 2o4c_A          130 RLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLL--DEPRLAALRPGTW  202 (380)
T ss_dssp             HHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSB--CHHHHHTSCTTEE
T ss_pred             HHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhc--CHHHHhhCCCCcE
Confidence            99999999999999999865422    22333 46899999999999999999998    99999  6788999999999


Q ss_pred             EEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          160 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       160 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      +||++|+.+++++++.++++++++.....+++..+|
T Consensus       203 lIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP  238 (380)
T 2o4c_A          203 LVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP  238 (380)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred             EEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCC
Confidence            999999999999999999999888777778887765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.80  E-value=5.8e-18  Score=155.88  Aligned_cols=250  Identities=11%  Similarity=0.175  Sum_probs=170.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC-------------ccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-------------KYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~aDivi~~v  134 (358)
                      ...++|+|||+|.||+.+|..|+..|++|.+| ++++..+.+.+.|.             ...++.++ ++++|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            34579999999999999999999999999999 88877777765442             22345554 57899999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC----eEecCCCCCCC--CcCCCCceEEEecC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSK--KPAEDGQLIFLAAG  208 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g  208 (358)
                      | +.+++.++   +++.+.++++++||.+.+|-... +.+.+.+. ..+    ....+...+..  .....+.  +.++.
T Consensus        95 k-~~~~~~~l---~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~~g~--~~ig~  166 (318)
T 3hwr_A           95 K-STDTQSAA---LAMKPALAKSALVLSLQNGVENA-DTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHGRGE--LVIEP  166 (318)
T ss_dssp             C-GGGHHHHH---HHHTTTSCTTCEEEEECSSSSHH-HHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEEEEE--EEECC
T ss_pred             c-cccHHHHH---HHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcCCce--EEEcC
Confidence            6 66899998   88888899999999988876543 35666553 211    11111111111  1111122  22333


Q ss_pred             CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC
Q 018303          209 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLD  267 (358)
Q Consensus       209 ~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~  267 (358)
                       .+..+.++++|+..+.++....+.....|.|++.|...+.                     +..++.|+..++++.|++
T Consensus       167 -~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~  245 (318)
T 3hwr_A          167 -TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVK  245 (318)
T ss_dssp             -CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCC
Confidence             4456789999999999998888877799999998875443                     456889999999999986


Q ss_pred             H--H---HHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          268 P--N---VLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       268 ~--~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      .  +   .+.+.+....       ...++|.+ |...|  -+++.+   ++.++++++++|+++|+++.++++++....
T Consensus       246 l~~~~~~~~~~~~~~~~-------~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~  313 (318)
T 3hwr_A          246 LPDDVALAIRRIAETMP-------RQSSSTAQ-DLARGKRSEIDHL---NGLIVRRGDALGIPVPANRVLHALVRLIED  313 (318)
T ss_dssp             CCTTHHHHHHHHHHHST-------TCCCHHHH-HHHTTCCCSGGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcC-------CCCcHHHH-HHHcCChhHHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence            3  2   2222222211       11223332 22112  245555   789999999999999999999999887654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.79  E-value=2.8e-18  Score=155.12  Aligned_cols=194  Identities=13%  Similarity=0.199  Sum_probs=144.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|+|||+|.||+.+++.|.+.|++|.+|||++++.+.+.+.|+.  ...+++++ +++|+|++|+| +..+..++   +
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~---~   75 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTL---E   75 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHH---H
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHH---H
Confidence            589999999999999999999999999999999888777766653  45678888 89999999997 67888888   7


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCC----CcC----CCCceEEEec---CCHhHHHHH
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSK----KPA----EDGQLIFLAA---GDKSLYNTV  216 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~----~~~----~~~~~~~~~~---g~~~~~~~v  216 (358)
                      ++.+.++++++|+++++..+...+.+.+.+.    .+++. |+.+..    ...    ..+..+.++.   ++++..+.+
T Consensus        76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~----~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v  151 (279)
T 2f1k_A           76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS----GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACL  151 (279)
T ss_dssp             HHGGGSCTTCEEEECCSCCHHHHHHHHHHST----TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHH
T ss_pred             HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC----CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHH
Confidence            7878889999999998887766655555432    34443 555322    111    1343444442   478889999


Q ss_pred             HHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhh
Q 018303          217 APLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD--PNVLVEVVSQ  277 (358)
Q Consensus       217 ~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~  277 (358)
                      +++|+.+|.+++.+++.....+.+++.|....... ++.++.   ...|.+  .+....++..
T Consensus       152 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~~---~~~~~~~~~~~~~~l~~~  210 (279)
T 2f1k_A          152 RSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQAC---AGEKDGDILKLAQNLASS  210 (279)
T ss_dssp             HHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---HTCSCHHHHHHHHHHCCH
T ss_pred             HHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHHH---HhcccccchhHHHhhcCC
Confidence            99999999999999988889999999887555443 333433   456665  4555555443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.79  E-value=1.2e-17  Score=153.38  Aligned_cols=257  Identities=16%  Similarity=0.136  Sum_probs=171.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|+|||+|.||+.+|..|++.|++|.+|+|++  .+.+.+.|+.              .+++.++ ++.+|+|++++| 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk-   78 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLK-   78 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCC-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecC-
Confidence            689999999999999999999999999999975  3556554431              2245544 678999999995 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC----eEecCCCCCCCCcCCCCceEEEec----C
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAA----G  208 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----g  208 (358)
                      +.+++.++   +.+.+.+.++++||.+.+|-.. .+.+.+.+....+    .+..+-..+.-.....+.-.+.++    .
T Consensus        79 ~~~~~~~l---~~l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~  154 (312)
T 3hn2_A           79 TFANSRYE---ELIRPLVEEGTQILTLQNGLGN-EEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR  154 (312)
T ss_dssp             GGGGGGHH---HHHGGGCCTTCEEEECCSSSSH-HHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred             CCCcHHHH---HHHHhhcCCCCEEEEecCCCCc-HHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence            78899998   8888889999999998887543 2456666654321    111221111111111111122222    2


Q ss_pred             CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC--
Q 018303          209 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVG--  265 (358)
Q Consensus       209 ~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G--  265 (358)
                      +.+..+.+.++|+..|.++....+.....|.|++.|...+.                     +..++.|+.+++++.|  
T Consensus       155 ~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~  234 (312)
T 3hn2_A          155 DTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLA  234 (312)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             ccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCc
Confidence            45677889999999999998888877799999998875442                     4568899999999999  


Q ss_pred             CCH--HHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          266 LDP--NVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       266 ~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                      ++.  +.....+......+    ...++|.+ |...+  -+++.+   .++++++++++|+++|+++.++++++.....|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~----~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~ll~~~~~~~  306 (312)
T 3hn2_A          235 TFIADGYVDDMLEFTDAMG----EYKPSMEI-DREEGRPLEIAAI---FRTPLAYGAREGIAMPRVEMLATLLEQATGEG  306 (312)
T ss_dssp             SCCCTTHHHHHHHHHTTSC----SCCCHHHH-HHHTTCCCCHHHH---THHHHHHHHHTTCCCHHHHHHHHHHHHHTTC-
T ss_pred             cCCCHHHHHHHHHHHhcCC----CCCchHHH-HHHhCCCccHHHH---hhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Confidence            642  22222222211111    01123332 22222  234444   78999999999999999999999999887766


Q ss_pred             CC
Q 018303          342 LS  343 (358)
Q Consensus       342 ~~  343 (358)
                      .-
T Consensus       307 ~~  308 (312)
T 3hn2_A          307 HH  308 (312)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.79  E-value=5.1e-18  Score=153.57  Aligned_cols=189  Identities=15%  Similarity=0.216  Sum_probs=145.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCc--cCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEVAA-SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|+|||+|.||..+++.|...|+  +|++|||++++.+.+.+.|+.  ...+++++++ ++|+|++|+| +..+..++ 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v~-   79 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA-   79 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCC-HHHHHHHH-
Confidence            589999999999999999999998  899999998887777666664  3557888899 9999999997 66888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCC----CcC----CCCceEEEe---cCCHhHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KPA----EDGQLIFLA---AGDKSLY  213 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~----~~~----~~~~~~~~~---~g~~~~~  213 (358)
                        .++.+.++++.+|++++++.....+.+.+.+.+.   +++ +|+++.+    ...    ..+..++++   +++++..
T Consensus        80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~  154 (281)
T 2g5c_A           80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRL  154 (281)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHH
T ss_pred             --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHH
Confidence              6777788999999999998887777787777652   554 4555432    111    245555665   5688899


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV  270 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~  270 (358)
                      +.++++|+.+|.+++.+++...+.+.|++.+....... ++.+++   ...|++.+.
T Consensus       155 ~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~-~~~~~~---~~~~~~~~~  207 (281)
T 2g5c_A          155 KLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF-ALVDTL---IHMSTPEVD  207 (281)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---HHHCBTTBC
T ss_pred             HHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcccchHH
Confidence            99999999999999999987779999999887665443 333443   334555433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.79  E-value=2e-18  Score=156.40  Aligned_cols=194  Identities=13%  Similarity=0.126  Sum_probs=142.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------------------------CCccCCCHHHHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------------GAKYQPSPDEVA  124 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------------g~~~~~~~~~~~  124 (358)
                      .++|+|||+|.||..+|..++..|++|++||+++++.+...+.                         ++....++++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            3689999999999999999999999999999998876655432                         135567888999


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  204 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (358)
                      ++||+||+++|.+.+.+..++  +++.+.+++++++++.+++.+.  ..+.+.+... ..++....+...   ...+++.
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~--~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~~-~~~ig~h~~~p~---~~~~lve  155 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIY--TKLGELAPAKTIFATNSSTLLP--SDLVGYTGRG-DKFLALHFANHV---WVNNTAE  155 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH--HHHHHHHSCG-GGEEEEEECSST---TTSCEEE
T ss_pred             ccCCEEEEeccCcHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCC-cceEEEccCCCc---ccCceEE
Confidence            999999999997765655542  6677789999999966555443  3555555332 234443333211   2334444


Q ss_pred             EecC---CHhHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303          205 LAAG---DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       205 ~~~g---~~~~~~~v~~ll~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  279 (358)
                      ++.+   +++.++.+.++++.+|+.++.++.  +|     .++++.+.    ..++|++.++++.+++++++++++..+.
T Consensus       156 vv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g-----~i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~~  226 (283)
T 4e12_A          156 VMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAG-----YVLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIGT  226 (283)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTT-----TTHHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC-----EEehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence            5544   789999999999999999999854  55     13444443    3577999999999999999999998754


Q ss_pred             c
Q 018303          280 I  280 (358)
Q Consensus       280 ~  280 (358)
                      +
T Consensus       227 g  227 (283)
T 4e12_A          227 G  227 (283)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.79  E-value=1e-17  Score=152.85  Aligned_cols=182  Identities=14%  Similarity=0.177  Sum_probs=138.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ++|+||| +|.||..+|+.|++.|++|.++||+++.             +..+++++||+||+|+| +..+..++   ++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp-~~~~~~vl---~~   84 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVP-INLTLETI---ER   84 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSC-GGGHHHHH---HH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCC-HHHHHHHH---HH
Confidence            5899999 9999999999999999999999997641             56688899999999997 66799998   77


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCe
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~  227 (358)
                      +.+.++++++|+++++......+.+.+.+   +..++. +|+++.+.....+..++++. .+++..+.++++++.+|.++
T Consensus        85 l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~  161 (298)
T 2pv7_A           85 LKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKI  161 (298)
T ss_dssp             HGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEE
T ss_pred             HHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEE
Confidence            87889999999999888776655555543   345665 47776655444455555543 36788899999999999999


Q ss_pred             EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          228 FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       228 ~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +.+++.....+.+++.+....... .+.+++   ...|++.+.+.++..
T Consensus       162 ~~~~~~~~d~~~a~~~~~p~~~a~-~l~~~l---~~~g~~~~~~~~la~  206 (298)
T 2pv7_A          162 YQTNATEHDHNMTYIQALRHFSTF-ANGLHL---SKQPINLANLLALSS  206 (298)
T ss_dssp             EECCHHHHHHHHHHHTHHHHHHHH-HHHHHH---TTSSCCHHHHHHTCC
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcCCCHHHHHhhcC
Confidence            999887778888887776544332 334444   347888776665444

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.77  E-value=3.1e-18  Score=155.73  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=125.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ..|+|+|||+|.||..+++.|...  |++|.+|||++++.+.+.+.|.  ....+++++++++|+|++|+| +...+.++
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~v~   83 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVP-IKKTIDFI   83 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSC-HHHHHHHH
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCC-HHHHHHHH
Confidence            357999999999999999999887  6899999999888777766665  345678888899999999997 66678888


Q ss_pred             ccccccccc-CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCC----CCCcCC----CCceEEEe---cCCHh
Q 018303          145 CGKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSG----SKKPAE----DGQLIFLA---AGDKS  211 (358)
Q Consensus       145 ~~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~----~~~~~~----~~~~~~~~---~g~~~  211 (358)
                         +++.+. ++++.+|++++++.....+.+.+.+.+.++.+++ +|+++    ++....    .+..+.++   +++++
T Consensus        84 ---~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~  160 (290)
T 3b1f_A           84 ---KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPN  160 (290)
T ss_dssp             ---HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTT
T ss_pred             ---HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHH
Confidence               777777 8999999999888877777777777654667776 46654    222211    34434433   35788


Q ss_pred             HHHHHHHHHHHhcCCeEEeCCcC
Q 018303          212 LYNTVAPLLDIMGKSRFYLGDVG  234 (358)
Q Consensus       212 ~~~~v~~ll~~~g~~~~~~g~~g  234 (358)
                      ..+.++++|+.+|.+++.+++..
T Consensus       161 ~~~~v~~l~~~~G~~~~~~~~~~  183 (290)
T 3b1f_A          161 TIPALQDLLSGLHARYVEIDAAE  183 (290)
T ss_dssp             HHHHHHHHTGGGCCEEEECCHHH
T ss_pred             HHHHHHHHHHHcCCEEEEcCHHH
Confidence            89999999999999888887654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.77  E-value=2.8e-17  Score=156.70  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=136.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh--------hHHhCC-------------CccCCCHHHHhhcC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD--------PLISLG-------------AKYQPSPDEVAASC  127 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~--------~~~~~g-------------~~~~~~~~~~~~~a  127 (358)
                      ..++|+|||+|.||..||..++..|++|++||+++++..        .+.+.|             +...++++ .+++|
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            346999999999999999999999999999999987321        122222             23466775 68899


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                      |+||+|+|...+++..++  .++.+.++++++|++.+++.++  ..+.+.+... ..++....+.+.+   ..+++.++.
T Consensus       132 DlVIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i--~~ia~~~~~p-~r~iG~HffnPv~---~m~LvEIv~  203 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDL--NEISSVLRDP-SNLVGIHFFNPAN---VIRLVEIIY  203 (460)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCH--HHHHTTSSSG-GGEEEEECCSSTT---TCCEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhH--HHHHHhccCC-cceEEEEecchhh---hCCEEEEEe
Confidence            999999998777766553  6677889999999755444333  2454444321 2344433333221   233444444


Q ss_pred             C---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          208 G---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       208 g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +   +++.++.+.++++.+|+.++.+++ +|     .++++++..    .++|++.++++.|++++++++++.
T Consensus       204 g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG-----fi~Nril~~----~~~EA~~l~~~~Ga~~e~ID~a~~  267 (460)
T 3k6j_A          204 GSHTSSQAIATAFQACESIKKLPVLVGNCKS-----FVFNRLLHV----YFDQSQKLMYEYGYLPHQIDKIIT  267 (460)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEEESSCCH-----HHHHHHHHH----HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEEEecccH-----HHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4   799999999999999999999998 44     244555443    467999999999999999999987

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.76  E-value=1.5e-17  Score=152.07  Aligned_cols=194  Identities=13%  Similarity=0.102  Sum_probs=137.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hCC------------------CccCCCH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG------------------AKYQPSP  120 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g------------------~~~~~~~  120 (358)
                      .++|+|||+|.||..+|..|+..|++|++||+++++.+...           +.|                  +...+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            46899999999999999999999999999999987765431           122                  3446788


Q ss_pred             HHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCC
Q 018303          121 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDG  200 (358)
Q Consensus       121 ~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  200 (358)
                      ++.+++||+||+++|.+.+++..++  +++.+.++++++|+..+++.+..  .+.+.+... -.++....+. +.  ...
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~--~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~-~~~~g~h~~~-P~--~~~  166 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT--SIANATTRQ-DRFAGLHFFN-PV--PVM  166 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCG-GGEEEEEECS-ST--TTC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCc-ccEEEEecCC-Cc--ccC
Confidence            8889999999999997766544332  66667788899888655444332  344433211 1233322222 11  123


Q ss_pred             ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      .+..++.+   +++.++.+.++++.+|..++.+++ ++     +++++++.    ..++|++.++++.|+++++++.++.
T Consensus       167 ~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l~----~~~~Ea~~l~~~g~~~~~~id~~~~  237 (302)
T 1f0y_A          167 KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLLV----PYLMEAIRLYERGDASKEDIDTAMK  237 (302)
T ss_dssp             CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHHH----HHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34445554   789999999999999999998877 44     34454443    4578999999999999999999887


Q ss_pred             hccc
Q 018303          277 QGAI  280 (358)
Q Consensus       277 ~~~~  280 (358)
                      .+.+
T Consensus       238 ~g~g  241 (302)
T 1f0y_A          238 LGAG  241 (302)
T ss_dssp             HHHC
T ss_pred             hCCC
Confidence            6543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.76  E-value=1.9e-17  Score=152.62  Aligned_cols=252  Identities=15%  Similarity=0.088  Sum_probs=170.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC---------------ccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---------------KYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|+|||+|.||+.+|..|++.|++|.+|+|++  .+.+.+.|+               ..+.+++++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            699999999999999999999999999999976  255544332               223566676668999999996


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCC------CCcCCCCceEEEec--
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS------KKPAEDGQLIFLAA--  207 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--  207 (358)
                       +.+++.++   +.+.+.++++++||.+.+|-... +.+.+.+...  .++.++++.+      ......+...+.++  
T Consensus        81 -~~~~~~~l---~~l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~  153 (320)
T 3i83_A           81 -VVEGADRV---GLLRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNY  153 (320)
T ss_dssp             -CCTTCCHH---HHHTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEES
T ss_pred             -CCChHHHH---HHHHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEecC
Confidence             67888888   78888889999999888775432 3566665443  3333332211      01111111222232  


Q ss_pred             --CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcC
Q 018303          208 --GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG--------------------SMMATFSEGLLHSEKVG  265 (358)
Q Consensus       208 --g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~--------------------~~~~~~~Ea~~l~~~~G  265 (358)
                        .+.+..+.+.++|+..+.++....+.....|.|++.|...+                    .+..++.|+.+++++.|
T Consensus       154 ~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G  233 (320)
T 3i83_A          154 PGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANG  233 (320)
T ss_dssp             SSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcC
Confidence              34567788999999999999888888889999999886433                    24568899999999999


Q ss_pred             CCHH--HHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303          266 LDPN--VLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS  339 (358)
Q Consensus       266 ~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~  339 (358)
                      ++.+  .....+......+    ...++|.+ |...+  -+++.+   .+.++++++++|+++|+++.++++++....
T Consensus       234 ~~l~~~~~~~~~~~~~~~~----~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~l~~~e~  303 (320)
T 3i83_A          234 HPLPEDIVEKNVASTYKMP----PYKTSMLV-DFEAGQPMETEVI---LGNAVRAGRRTRVAIPHLESVYALMKLLEL  303 (320)
T ss_dssp             CCCCTTHHHHHHHHHHHSC----CCCCHHHH-HHHHTCCCCHHHH---THHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcCC----CCCCcHHH-HHHhCCCchHHHH---ccHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            8642  2222222110000    01122332 12111  234444   789999999999999999999998876554

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.76  E-value=7.4e-18  Score=162.80  Aligned_cols=191  Identities=16%  Similarity=0.154  Sum_probs=140.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA  125 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~  125 (358)
                      .++|+|||+|.||..+|..++..|++|++||++++..+...+           .|             +...++++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            458999999999999999999999999999999987766432           22             23456664 578


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  204 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (358)
                      +||+||+++|...+++..++  .++.+.++++++++ |+|+.++.   .+.+.+.. ...++....+.+.+.   .+++.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~---~ia~~~~~-p~~~ig~hf~~Pa~v---~~Lve  154 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISIT---AIAAEIKN-PERVAGLHFFNPAPV---MKLVE  154 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH---HHTTTSSS-GGGEEEEEECSSTTT---CCEEE
T ss_pred             CCCEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHH---HHHHHccC-ccceEEeeecChhhh---CCeEE
Confidence            99999999998777754442  66777889999985 56665543   34443322 112333322222211   24566


Q ss_pred             EecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303          205 LAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA  279 (358)
Q Consensus       205 ~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  279 (358)
                      ++.+   +++.++.+.++++.+|+.++.+++ +|     +++++++..    .++|++.++++.+.+++++++++..+.
T Consensus       155 vv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~~~  224 (483)
T 3mog_A          155 VVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRDGA  224 (483)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHHTT
T ss_pred             EecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhcC
Confidence            6666   789999999999999999999988 55     666666655    467999999999999999999998643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=1.1e-17  Score=154.38  Aligned_cols=174  Identities=14%  Similarity=0.200  Sum_probs=137.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc----CCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS----CDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|||+|.||..+|+.|.+.|++|.+|||+++..+.+.+.|+....++.+++++    +|+|++|+| +..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP-~~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVP-MTAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSC-HHHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCC-HHHHHHHH-
Confidence            368999999999999999999999999999999988888878888777888888764    799999998 67888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCC-cC-------CCCceEEEecC---CHh--
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-PA-------EDGQLIFLAAG---DKS--  211 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-~~-------~~~~~~~~~~g---~~~--  211 (358)
                        +++.+. +++++|+|+++.+....+.+.+.+.  +..|++ +|+++.+. ..       ..+..++++.+   +++  
T Consensus        86 --~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~  160 (341)
T 3ktd_A           86 --DAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI  160 (341)
T ss_dssp             --HHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred             --HHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence              666654 8999999999998876666665543  457887 68887652 11       12445566543   456  


Q ss_pred             ------HHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH
Q 018303          212 ------LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM  250 (358)
Q Consensus       212 ------~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~  250 (358)
                            .++.+.++++.+|.+++.+++..+.....+++.+-....
T Consensus       161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia  205 (341)
T 3ktd_A          161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILA  205 (341)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHH
Confidence                  889999999999999999998887888877766544433

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.71  E-value=3e-17  Score=141.90  Aligned_cols=159  Identities=18%  Similarity=0.165  Sum_probs=118.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +...++|+|||+|.||+.+|..|.+.|++|.+|+|+++                  .++++|+|++++| +..++.++  
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~--   74 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA--   74 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH--
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH--
Confidence            45678999999999999999999999999999999764                  4578999999998 88899998  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hH------------HHHHHHHHHhcCCeEec------CCCCCCCCcCCCCceEEEec
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DT------------SKLINGHIKATGASFLE------APVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~------------~~~l~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  207 (358)
                       +++.+.++ ++++++++++.. .+            .+.+.+.+.  +..++.      .|.+..+.........++++
T Consensus        75 -~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~  150 (209)
T 2raf_A           75 -KQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVA  150 (209)
T ss_dssp             -HHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEE
T ss_pred             -HHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEc
Confidence             67766777 999999988654 11            345555553  345555      33332222111123333344


Q ss_pred             -CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH
Q 018303          208 -GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM  250 (358)
Q Consensus       208 -g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~  250 (358)
                       .+++..+.++++|+.+|.+++++++.+.+.+.|.+.+.+.+..
T Consensus       151 g~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~~~~  194 (209)
T 2raf_A          151 GNDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQMTLA  194 (209)
T ss_dssp             ESCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHHHHH
Confidence             4668899999999999999999999999999999988775544

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.71  E-value=6.5e-17  Score=140.95  Aligned_cols=162  Identities=17%  Similarity=0.259  Sum_probs=119.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      +|+|+|||+|+||..+++.|.+.|++|.+ ++|++++.+.+.+. +.....+..+.++++|+|++++| +.....++   
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~---   98 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIV---   98 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHH---
Confidence            47999999999999999999999999999 99999988876543 55555566677899999999997 77888888   


Q ss_pred             ccccccCCCCCEEEEccCCCh------------hHHHHHHHHHHhcCCeEe------cCCCCC-CCCcCCCCceEEEecC
Q 018303          148 HGAASGMGPGKGYVDVSTVDG------------DTSKLINGHIKATGASFL------EAPVSG-SKKPAEDGQLIFLAAG  208 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~------------~~~~~l~~~l~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~g  208 (358)
                      +++.+ + +++++|+++.+..            ...+.+.+.+...  .++      .+++.. ++.........++.++
T Consensus        99 ~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~--~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~  174 (220)
T 4huj_A           99 TQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA--KVVKAFNTLPAAVLAADPDKGTGSRVLFLSGN  174 (220)
T ss_dssp             TTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC--EEEEESCSSCHHHHTSCSBCSSCEEEEEEEES
T ss_pred             HHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC--CEEECCCCCCHHHhhhCcccCCCCeeEEEeCC
Confidence            66655 4 6889999987652            1455666666432  222      122222 2221222233455667


Q ss_pred             CHhHHHHHHHHHHHhcCCeEEeCCcChHHHH
Q 018303          209 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAM  239 (358)
Q Consensus       209 ~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~  239 (358)
                      +++..+.++++++.+|++++++|+.+.+.+.
T Consensus       175 ~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~  205 (220)
T 4huj_A          175 HSDANRQVAELISSLGFAPVDLGTLAASGPI  205 (220)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence            8899999999999999999999998866554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.71  E-value=6.2e-17  Score=147.40  Aligned_cols=252  Identities=12%  Similarity=0.055  Sum_probs=167.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC---ccCCCHHHHh-hcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA---KYQPSPDEVA-ASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      |+|+|||+|.||..+|..|++.|++|.+|+|+++..+.....|.   ....+..+.+ +.+|+|++++| +.+++.++  
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk-~~~~~~~l--   79 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVK-THQLDAVI--   79 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSC-GGGHHHHG--
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCC-ccCHHHHH--
Confidence            68999999999999999999999999999998765443222232   1112334444 78999999995 78999999  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                       +++.+.++++++||.+.+|-...+.     +...    ++.+..+-. .++.....+...+.. ++.+..+.+.++|+.
T Consensus        80 -~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~-~~pg~v~~~~~~~~~-~~~~~~~~l~~~l~~  151 (294)
T 3g17_A           80 -PHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQK-KGDVVTHFRDYQLRI-QDNALTRQFRDLVQD  151 (294)
T ss_dssp             -GGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEE-ETTEEEEEEEEEEEE-ECSHHHHHHHHHTTT
T ss_pred             -HHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEE-cCCCEEEECCCEEec-CccHHHHHHHHHHHh
Confidence             7887788889999999888655432     2222    111111111 111111111111222 355667888899998


Q ss_pred             hcCCeEEeCCcChHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhccc
Q 018303          223 MGKSRFYLGDVGNGAAMKLVVNMIMG--------------------SMMATFSEGLLHSEKVGLD--PNVLVEVVSQGAI  280 (358)
Q Consensus       223 ~g~~~~~~g~~g~~~~~k~~~n~~~~--------------------~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~  280 (358)
                      .+.++....+.....|.|++.|...+                    .+..++.|+.+++++.|++  .+.+.+.+.....
T Consensus       152 ~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~  231 (294)
T 3g17_A          152 SQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQG  231 (294)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred             CCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Confidence            89999888898779999999887433                    1346889999999999975  4444444432110


Q ss_pred             cchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          281 SAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       281 ~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      ..   ....++|.+ |...|  -+++.+   +++++++++++|+++|+++.++++++...+.
T Consensus       232 ~~---~~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~~  286 (294)
T 3g17_A          232 YP---DEMGTSMYY-DIVHQQPLEVEAI---QGFIYRRAREHNLDTPYLDTIYSFLRAYQQN  286 (294)
T ss_dssp             SC---TTCCCHHHH-HHHTTCCCSGGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cC---CCCCCcHHH-HHHcCCCccHHHh---hhHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Confidence            00   001123332 12111  235555   7899999999999999999999999877654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.70  E-value=4.3e-17  Score=141.18  Aligned_cols=172  Identities=18%  Similarity=0.266  Sum_probs=131.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-C-------CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-------AKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g-------~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      |+|+||| +|.||+.+++.|.+.|++|.+++|++++.+.+.+. +       +. ..++.++++++|+|++++| +..++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHH
Confidence            5899999 99999999999999999999999998776655432 2       33 3577888999999999997 67778


Q ss_pred             hhhcccccccccCCCCCEEEEccCCCh------------hHHHHHHHHHHhcCCeEecC--CCCCCCCcC--CCCceEEE
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDG------------DTSKLINGHIKATGASFLEA--PVSGSKKPA--EDGQLIFL  205 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~------------~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~--~~~~~~~~  205 (358)
                      .++   +++.+.+ +++++++++++..            ...+.+.+.+.  +..++.+  |+.+.....  ..+...++
T Consensus        79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  152 (212)
T 1jay_A           79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP  152 (212)
T ss_dssp             HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred             HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence            887   5665556 4899999988544            22566777665  3556665  433222111  33455566


Q ss_pred             ecCC-HhHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHHHHHH
Q 018303          206 AAGD-KSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMIMGSM  250 (358)
Q Consensus       206 ~~g~-~~~~~~v~~ll~~~-g~~~~~~g~~g~~~~~k~~~n~~~~~~  250 (358)
                      ++++ ++..+.+.++++.+ |.+++++++.+.+.+.|.+.|.+....
T Consensus       153 ~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~  199 (212)
T 1jay_A          153 VCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM  199 (212)
T ss_dssp             EEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred             EECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence            6664 88999999999999 999999999999999999999887765

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.54  E-value=9.6e-19  Score=150.18  Aligned_cols=164  Identities=18%  Similarity=0.253  Sum_probs=117.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ..+|+|+|||+|+||+.+++.|.+.|++|.+|+|+++ .+.+...++... ++.++++++|+|++++| +..++.++   
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~-~~~~~~v~---   90 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVH-REHYDFLA---   90 (201)
Confidence            4557999999999999999999999999999999876 444444556555 78888999999999998 45677765   


Q ss_pred             ccccccCCCCCEEEEccCCChh------HHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCc-----eEEEecCCHhHHHH
Q 018303          148 HGAASGMGPGKGYVDVSTVDGD------TSKLINGHIKATGASFLEA-PVSGSKKPAEDGQ-----LIFLAAGDKSLYNT  215 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~------~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~g~~~~~~~  215 (358)
                      . + ..+.++++|||++++.+.      ..+.+.+.+...  .++.+ +..+.. ....+.     ..++++++++.++.
T Consensus        91 ~-l-~~~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~--~vvra~~n~~a~-~~~~g~l~g~~~~~~~g~~~~~~~~  165 (201)
T 2yjz_A           91 E-L-ADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA--HVVKAFNTISAW-ALQSGTLDASRQVFVCGNDSKAKDR  165 (201)
Confidence            2 2 335678999999998863      223333333221  11111 111110 111122     14566778889999


Q ss_pred             HHHHHHHhcCCeEEeCCcChHHHHHHH
Q 018303          216 VAPLLDIMGKSRFYLGDVGNGAAMKLV  242 (358)
Q Consensus       216 v~~ll~~~g~~~~~~g~~g~~~~~k~~  242 (358)
                      ++++|+.+|.+++++|+.+.+.+.|.+
T Consensus       166 v~~ll~~~G~~~~~~G~l~~a~~~e~~  192 (201)
T 2yjz_A          166 VMDIARTLGLTPLDQGSLVAAKEIENY  192 (201)
Confidence            999999999999999999989888764

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.68  E-value=8.7e-17  Score=145.09  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=119.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcE-EEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|||||+|+||..+++.|... ++| .+|||++++.+.+.+ .+. .+.+++++++++|+|++|+|. .....++   .
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~-~~~~~v~---~   76 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPD-RYIKTVA---N   76 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCT-TTHHHHH---T
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCCh-HHHHHHH---H
Confidence            5899999999999999999887 899 599999888777654 355 666788888899999999974 5577777   5


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC-CCceEEEecCCHhHHHHHHHHHHHhcCCe
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE-DGQLIFLAAGDKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~v~~ll~~~g~~~  227 (358)
                      ++.   +++++||+++.+.+.+.  +.+.  ..+......++.+.+.... .....+...++++.++.++++++.+|.++
T Consensus        77 ~l~---~~~~ivi~~s~~~~~~~--l~~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~  149 (276)
T 2i76_A           77 HLN---LGDAVLVHCSGFLSSEI--FKKS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY  149 (276)
T ss_dssp             TTC---CSSCCEEECCSSSCGGG--GCSS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCE
T ss_pred             Hhc---cCCCEEEECCCCCcHHH--HHHh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCE
Confidence            543   68899999987655432  2111  1111122233444333222 23444566677778999999999999999


Q ss_pred             EEeCCcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303          228 FYLGDVGN---GAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN  269 (358)
Q Consensus       228 ~~~g~~g~---~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~  269 (358)
                      +.+++.+.   ....+++.|.+.    ..+.|+..++++.|++.+
T Consensus       150 ~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~  190 (276)
T 2i76_A          150 FVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEP  190 (276)
T ss_dssp             EECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCH
T ss_pred             EEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChH
Confidence            99986442   233455555443    345677788899999988

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.67  E-value=3.6e-16  Score=142.42  Aligned_cols=196  Identities=14%  Similarity=0.071  Sum_probs=142.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC--------------CCccCCCHHHH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL--------------GAKYQPSPDEV  123 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~--------------g~~~~~~~~~~  123 (358)
                      ...+|+|||+|.||+.+|..++..|++|.++|++++..+...           +.              .+..++++.++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            345899999999999999999999999999999987544321           11              13346788899


Q ss_pred             hhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceE
Q 018303          124 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI  203 (358)
Q Consensus       124 ~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  203 (358)
                      +++||+|+.++|...+++.-+|  +++-+..++++++-..+++-+.  ..+.+.+... -.++..+.|..++..   +++
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~p-~r~ig~HffNP~~~m---~LV  156 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLP--SKLFTGLAHV-KQCIVAHPVNPPYYI---PLV  156 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCH--HHHHTTCTTG-GGEEEEEECSSTTTC---CEE
T ss_pred             hccCcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccc--hhhhhhccCC-CcEEEecCCCCcccc---chH
Confidence            9999999999999999988775  6677778889888755554444  3455555432 234444444433322   334


Q ss_pred             EEecC---CHhHHHHHHHHHHHhcCCeEEe-CC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303          204 FLAAG---DKSLYNTVAPLLDIMGKSRFYL-GD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG  278 (358)
Q Consensus       204 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~-g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  278 (358)
                      -++.+   +++.++.+..+++.+|++++.+ .+ +|      ++.|-+...   .++|++.+.++.+.++++++.++..+
T Consensus       157 Eiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG------Fi~NRl~~~---~~~EA~~lv~eGvas~edID~~~~~g  227 (319)
T 3ado_A          157 ELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG------FVLNRLQYA---IISEAWRLVEEGIVSPSDLDLVMSDG  227 (319)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT------TTHHHHHHH---HHHHHHHHHHTTSSCHHHHHHHHHTT
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC------EeHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            33333   7899999999999999998755 55 77      555554433   45699999999999999999999876


Q ss_pred             ccc
Q 018303          279 AIS  281 (358)
Q Consensus       279 ~~~  281 (358)
                      .+.
T Consensus       228 ~g~  230 (319)
T 3ado_A          228 LGM  230 (319)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.66  E-value=7.2e-16  Score=155.89  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=133.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVA  124 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~  124 (358)
                      ..++|+|||+|.||..+|..++..|++|++||++++..+..           .+.|             +...+++ +.+
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            34689999999999999999999999999999998776542           1223             2345566 678


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF  204 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (358)
                      ++||+||+++|.+.+++..++  .++.+.++++++|++.+++.+..  .+.+.+.. .-.++....+...   ...+++.
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-~~~~ig~hf~~P~---~~~~lve  463 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALKR-PENFVGMHFFNPV---HMMPLVE  463 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCSC-GGGEEEEECCSST---TTCCEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcC-ccceEEEEccCCc---ccCceEE
Confidence            899999999998877766553  56777889999988554444432  34443321 1123333333321   1223444


Q ss_pred             EecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018303          205 LAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  275 (358)
Q Consensus       205 ~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  275 (358)
                      ++.+   +++.++.+.++++.+|+.++.+++ +|     .++++++.    ..++|++.++++ |++++++++++
T Consensus       464 vv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~  528 (715)
T 1wdk_A          464 VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPG-----FLVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM  528 (715)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCC-----hhhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Confidence            4443   789999999999999999999988 55     23444433    357899999987 99999999998

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.65  E-value=1.1e-15  Score=132.66  Aligned_cols=165  Identities=18%  Similarity=0.264  Sum_probs=118.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      .+|+|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+.|+... +..++++++|+|++++| +...+.++   +
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~-~~~~~~v~---~  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVF-REHYSSLC---S  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSC-GGGSGGGG---G
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCC-hHHHHHHH---H
Confidence            4579999999999999999999999999999999887776665566655 78888999999999997 55666666   3


Q ss_pred             cccccCCCCCEEEEccCCChhHH--------HHHHHHHHhcCCeEecC--CCCCC---CCcCCCCceEEEecCCHhHHHH
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTS--------KLINGHIKATGASFLEA--PVSGS---KKPAEDGQLIFLAAGDKSLYNT  215 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~--------~~l~~~l~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~g~~~~~~~  215 (358)
                       +...+ +++++|+++++.+...        +.+.+.+.  +..++.+  ++.+.   +.........++.+++++..+.
T Consensus       102 -l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~--~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~  177 (215)
T 2vns_A          102 -LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP--TCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRA  177 (215)
T ss_dssp             -GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT--TSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHH
T ss_pred             -HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC--CCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHH
Confidence             43334 8999999999987543        11222222  2222221  11000   0011112235667779999999


Q ss_pred             HHHHHHHhcCCeEEeCCcChHHHHHHH
Q 018303          216 VAPLLDIMGKSRFYLGDVGNGAAMKLV  242 (358)
Q Consensus       216 v~~ll~~~g~~~~~~g~~g~~~~~k~~  242 (358)
                      ++++|+.+|.+++++++.+.+.+++..
T Consensus       178 v~~ll~~~G~~~~~~g~~~~~~~~e~~  204 (215)
T 2vns_A          178 VSEMALAMGFMPVDMGSLASAWEVEAM  204 (215)
T ss_dssp             HHHHHHHTTCEEEECCSGGGHHHHHHS
T ss_pred             HHHHHHHcCCceEeecchhhhhHhhhh
Confidence            999999999999999999988888754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.64  E-value=2.8e-16  Score=143.83  Aligned_cols=253  Identities=15%  Similarity=0.043  Sum_probs=155.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCC----------HHHHhhcCCEEEEeeCChhhH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS----------PDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~~~aDivi~~vp~~~~~  140 (358)
                      |+|+|||+|.||..+|..|+ .|++|.+++|++++.+.+.+.|+....+          ..+....+|+|++++ ++.++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K~~~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTV-KQHQL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECC-CGGGH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEe-CHHHH
Confidence            69999999999999999999 9999999999987777776655433211          124567899999999 48889


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCC--CCcCCCCceEEEe-cCCHhHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGS--KKPAEDGQLIFLA-AGDKSLY  213 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~-~g~~~~~  213 (358)
                      +.++   +.+.+ +.++. ||.+.+|-... +.+.+.+....    +.++++-..+.  ......+.+.+-. .+..+..
T Consensus        81 ~~~l---~~l~~-~~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~  154 (307)
T 3ego_A           81 QSVF---SSLER-IGKTN-ILFLQNGMGHI-HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDR  154 (307)
T ss_dssp             HHHH---HHTTS-SCCCE-EEECCSSSHHH-HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGG
T ss_pred             HHHH---HHhhc-CCCCe-EEEecCCccHH-HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHH
Confidence            9888   66644 45556 88887776543 23443332221    11111111110  0111223333221 1223344


Q ss_pred             HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCHHHHH
Q 018303          214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      +.+...|+..|..+....+.....|.|++.|...+.                     +..++.|+..++++.  +++.+.
T Consensus       155 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~--~~~~~~  232 (307)
T 3ego_A          155 LNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE--NEEKAW  232 (307)
T ss_dssp             GTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--CHHHHH
T ss_pred             HHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--ChHHHH
Confidence            455556666677888888888899999999975553                     345777777776543  233333


Q ss_pred             HHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303          273 EVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH  340 (358)
Q Consensus       273 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~  340 (358)
                      +.+....   .......++|.+ |...|  -+++.+   ++.++++++++|+++|+++.++++++...+.
T Consensus       233 ~~~~~~~---~~~~~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gv~tP~~~~l~~li~~~e~~  295 (307)
T 3ego_A          233 ERVQAVC---GQTKENRSSMLV-DVIGGRQTEADAI---IGYLLKEASLQGLDAVHLEFLYGSIKALERN  295 (307)
T ss_dssp             HHHHHHH---HHTTTCCCHHHH-HHHHTCCCSHHHH---HHHHHHHHHHTTCCCHHHHHHHHHHHHTC--
T ss_pred             HHHHHHH---HhcCCCCchHHH-HHHcCCcccHHHh---hhHHHHHHHHcCCCCcHHHHHHHHHHHHHhh
Confidence            3322110   000011223332 22111  245555   7899999999999999999999999876543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.64  E-value=1.9e-15  Score=152.92  Aligned_cols=188  Identities=14%  Similarity=0.117  Sum_probs=132.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA  125 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~  125 (358)
                      .++|+|||+|.||..+|..++..|++|++||++++..+....           .|             +...+++ +.++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  390 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR  390 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence            468999999999999999999999999999999876654311           12             2344566 5688


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL  205 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (358)
                      +||+||+++|.+.+++..++  .++.+.+++++++++.+++.+..  .+.+.+.. .-.++..+.+..+   ...+++.+
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~--~la~~~~~-p~~~iG~hf~~P~---~~~~lvev  462 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLN--KIGERTKS-QDRIVGAHFFSPA---HIMPLLEI  462 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHTTTCSC-TTTEEEEEECSST---TTCCEEEE
T ss_pred             CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcC-CCCEEEecCCCCc---ccCceEEE
Confidence            99999999998877765553  56777889999887554444332  34443322 1123333222211   12234444


Q ss_pred             ecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          206 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       206 ~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                      +.|   +++.++.+.++++.+|+.++.+++ +|.     ++++++.    ..++|++.++++ |++++++++++.
T Consensus       463 v~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~~~  527 (725)
T 2wtb_A          463 VRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAAMFLVEC-GADPYLIDRAIS  527 (725)
T ss_dssp             EECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            444   889999999999999999999988 551     3344433    357899999988 999999999983

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.63  E-value=2.7e-15  Score=139.08  Aligned_cols=195  Identities=15%  Similarity=0.119  Sum_probs=129.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+.+++|+|||+|.||..+|+.|+..|++|++++|++++ .+...+.|+... ++.++++++|+|++|+| +.....++ 
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp-~~~~~~v~-   89 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTP-DEFQGRLY-   89 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSC-HHHHHHHH-
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCC-cHHHHHHH-
Confidence            355679999999999999999999999999999998765 445555677665 88899999999999997 56668888 


Q ss_pred             ccc-cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCc------CCCCceEEEe---cCCHhHHH
Q 018303          146 GKH-GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKP------AEDGQLIFLA---AGDKSLYN  214 (358)
Q Consensus       146 ~~~-~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~---~g~~~~~~  214 (358)
                        . ++.+.++++++|+++++  . .. .+.......++.++.. | .+....      ...+...+++   ..+++..+
T Consensus        90 --~~~i~~~l~~~~ivi~~~g--v-~~-~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~  162 (338)
T 1np3_A           90 --KEEIEPNLKKGATLAFAHG--F-SI-HYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKN  162 (338)
T ss_dssp             --HHHTGGGCCTTCEEEESCC--H-HH-HTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHH
T ss_pred             --HHHHHhhCCCCCEEEEcCC--c-hh-HHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHH
Confidence              6 78788999999998743  2 22 2222111224445533 4 221111      1124433333   23677889


Q ss_pred             HHHHHHHHhcC-C--eEEeCCcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303          215 TVAPLLDIMGK-S--RFYLGDVGNGAAMKLVVN-MIMGSMMATFSEGLLHSEKVGLDPNVL  271 (358)
Q Consensus       215 ~v~~ll~~~g~-~--~~~~g~~g~~~~~k~~~n-~~~~~~~~~~~Ea~~l~~~~G~~~~~~  271 (358)
                      .+..+++.+|. .  ++.+..........+..+ .+.+.....+..++..+.+.|++++..
T Consensus       163 ~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          163 VALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             HHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999998 4  566554333333344444 333333344444444557899998765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.63  E-value=4e-15  Score=143.53  Aligned_cols=188  Identities=16%  Similarity=0.223  Sum_probs=129.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-----------CccCCCHHHHhhcC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-----------AKYQPSPDEVAASC  127 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-----------~~~~~~~~~~~~~a  127 (358)
                      .++|+|||+|.||..+|..++..|++|++||++++..+...+           .|           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999999876654322           11           1234566 567899


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                      |+||+++|...+++..++  .++.+.++++++|++.+.+.+. . .+.+.+.. .-.++....+. |.  ...+++.++.
T Consensus       116 DlVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~snTs~~~~-~-~la~~~~~-~~~~ig~hf~~-P~--~~~~lvevv~  187 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNV-D-DIASSTDR-PQLVIGTHFFS-PA--HVMRLLEVIP  187 (463)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCH-H-HHHTTSSC-GGGEEEEEECS-ST--TTCCEEEEEE
T ss_pred             CEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCcCH-H-HHHHHhcC-CcceEEeecCC-Cc--ccceeEEEeC
Confidence            999999997665554442  5666778899999863333332 2 55554432 11233332221 11  1223344443


Q ss_pred             ---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303          208 ---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS  276 (358)
Q Consensus       208 ---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  276 (358)
                         ++++.++.+.++++.+|+.++.+++ +|      .+.|.+...   .++|++.++++ |++++++.+++.
T Consensus       188 g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~g------fi~Nrll~~---~~~ea~~l~~~-G~~~~~id~~~~  250 (463)
T 1zcj_A          188 SRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRMLAP---YYNQGFFLLEE-GSKPEDVDGVLE  250 (463)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEEBCCSTT------TTHHHHHHH---HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEEECCCcc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence               4889999999999999999999988 55      233333332   34799988877 899999999987

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.62  E-value=4.2e-15  Score=138.73  Aligned_cols=257  Identities=12%  Similarity=0.005  Sum_probs=169.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC--------cEEEEcCCccch-----hhHHhC--------------CCccCCCHHH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC--------DVTVWNRTKSKC-----DPLISL--------------GAKYQPSPDE  122 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~--------~V~~~~~~~~~~-----~~~~~~--------------g~~~~~~~~~  122 (358)
                      ..||+|||+|.||+++|..|+..|+        +|.+|.|+++..     +.+...              ++..++|+.+
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~  113 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID  113 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence            4589999999999999999998764        599999986531     112111              2345678999


Q ss_pred             HhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh-------HHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          123 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       123 ~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      +++++|+|++++| +..++.++   +++.+.++++..+|+++-|-..       ..+.+.+.+. ..+.++..|.+..+.
T Consensus       114 al~~ad~ii~avP-s~~~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~~~vLsGPs~A~EV  188 (391)
T 4fgw_A          114 SVKDVDIIVFNIP-HQFLPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQCGALSGANIATEV  188 (391)
T ss_dssp             HHTTCSEEEECSC-GGGHHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CEEEEEECSCCHHHH
T ss_pred             HHhcCCEEEEECC-hhhhHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-ccceeccCCchHHHh
Confidence            9999999999997 78999999   8888889999999999776421       2333444332 235567778776554


Q ss_pred             cCCCCceEEEecCC---------HhHHHHHHHHHHHhcCCeEEeCC-cC--hHHHHHHH--------------HHHHHHH
Q 018303          196 PAEDGQLIFLAAGD---------KSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMKLV--------------VNMIMGS  249 (358)
Q Consensus       196 ~~~~~~~~~~~~g~---------~~~~~~v~~ll~~~g~~~~~~g~-~g--~~~~~k~~--------------~n~~~~~  249 (358)
                      .......+.+.+.+         +...+.++.+|..--++++...| .|  .+-++|-+              .|.-...
T Consensus       189 a~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAAL  268 (391)
T 4fgw_A          189 AQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAI  268 (391)
T ss_dssp             HTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence            44444444444332         22345677787766677777766 33  33334433              3666677


Q ss_pred             HHHHHHHHHHHHHHc---CCCHHHHHHH------Hhhccccchhhhc--cccccccCCCCC--------CCchhhHHHHH
Q 018303          250 MMATFSEGLLHSEKV---GLDPNVLVEV------VSQGAISAPMYSL--KGPSMIESLYPT--------AFPLKHQQKDL  310 (358)
Q Consensus       250 ~~~~~~Ea~~l~~~~---G~~~~~~~~~------~~~~~~~s~~~~~--~~~~~~~~~~~~--------~~~~~~~~kd~  310 (358)
                      +...++|+.+++.+.   |-++..+..+      +-.+.+    .++  .+..+.++....        ...+..+.+..
T Consensus       269 itrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s----SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta  344 (391)
T 4fgw_A          269 QRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG----GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITC  344 (391)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS----SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC----CccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHH
Confidence            888999999999997   5555544322      222222    222  122222111100        01234456677


Q ss_pred             HHHHHHHHhcCC--CchHHHHHHHHHH
Q 018303          311 RLALGLAESVSQ--STPIAAAANELYK  335 (358)
Q Consensus       311 ~~~~~~a~~~gi--~~p~~~a~~~~~~  335 (358)
                      ..+.++++++++  ++|+++++++++.
T Consensus       345 ~~v~~l~~~~~v~~emPI~~~vy~IL~  371 (391)
T 4fgw_A          345 KEVHEWLETCGSVEDFPLFEAVYQIVY  371 (391)
T ss_dssp             HHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            889999999999  8999999999887

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.59  E-value=1.4e-14  Score=125.60  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      ..|+|+|||+|.||..+|+.|++.|++|.+|++.                  ++ +++||  ++++|. ..+..++   +
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~-~ai~~vl---~   59 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDA-HGVEGYV---E   59 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECS-SCHHHHH---H
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcH-HHHHHHH---H
Confidence            3479999999999999999999999999999982                  12 56799  999985 4888888   7


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCe
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR  227 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~  227 (358)
                      ++.+.+++++++++++......   +.+.+...+..|+. +|+++.        ...+..++++..+.++++++.+|.++
T Consensus        60 ~l~~~l~~g~ivvd~sgs~~~~---vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~v  128 (232)
T 3dfu_A           60 KLSAFARRGQMFLHTSLTHGIT---VMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGSI  128 (232)
T ss_dssp             HHHTTCCTTCEEEECCSSCCGG---GGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHhcCCCCEEEEECCcCHHH---HHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCEE
Confidence            7888899999999986543322   22233356777775 677543        34555668889999999999999999


Q ss_pred             EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303          228 FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK  263 (358)
Q Consensus       228 ~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~  263 (358)
                      +.+++.........+.  ..+.++.++.++.+++++
T Consensus       129 v~~~~~~hd~~~AAvs--h~nhLv~L~~~A~~ll~~  162 (232)
T 3dfu_A          129 VEIADDKRAQLAAALT--YAGFLSTLQRDASYFLDE  162 (232)
T ss_dssp             CCCCGGGHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            9998866444432222  256666677788877744

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.45  E-value=5.3e-14  Score=134.30  Aligned_cols=132  Identities=14%  Similarity=0.011  Sum_probs=105.7

Q ss_pred             cCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           27 FCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        27 ~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      +.|++....+.++.| |.+...                 .++.+++|||||+|.||+.+|++++.+|++|++||+++.+.
T Consensus       232 l~r~~~~~~~~l~~g-w~r~~~-----------------~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~  293 (479)
T 1v8b_A          232 KYDNVYGCRHSLPDG-LMRATD-----------------FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA  293 (479)
T ss_dssp             TTHHHHHHHHHHHHH-HHHHHC-----------------CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             HHhchHhHHHHHhhh-hhhccc-----------------cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhH
Confidence            357776666666666 642111                 15778899999999999999999999999999999998764


Q ss_pred             hhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHH--HHHhcCC
Q 018303          107 DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLING--HIKATGA  183 (358)
Q Consensus       107 ~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~--~l~~~~~  183 (358)
                      ......|+.. .++++++++||+|++++    .+++++  +.+.++.|++|++|||++|+.+ +++++|.+  +++++.+
T Consensus       294 ~~a~~~g~~~-~~l~ell~~aDiVi~~~----~t~~lI--~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I  366 (479)
T 1v8b_A          294 IQAVMEGFNV-VTLDEIVDKGDFFITCT----GNVDVI--KLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENV  366 (479)
T ss_dssp             HHHHTTTCEE-CCHHHHTTTCSEEEECC----SSSSSB--CHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEE
T ss_pred             HHHHHcCCEe-cCHHHHHhcCCEEEECC----Chhhhc--CHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeE
Confidence            3444556654 58999999999999996    567777  6778899999999999999999 79999998  7766544

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.44  E-value=1.3e-12  Score=124.08  Aligned_cols=265  Identities=10%  Similarity=0.014  Sum_probs=149.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCcEEEEc---CCccchhhH-HhCC------------------C-ccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK-AGCDVTVWN---RTKSKCDPL-ISLG------------------A-KYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~-~g~~V~~~~---~~~~~~~~~-~~~g------------------~-~~~~~~~~~~~~  126 (358)
                      |+|+|||+|.||..+|..|+. .|++|.+|+   |+++..+.+ .+.+                  + ...+++++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            689999999999999999988 599999999   766665552 2222                  1 145578888899


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh--cCCeEec---CCCCCC---CC-cC
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLE---APVSGS---KK-PA  197 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~---~~~~~~---~~-~~  197 (358)
                      +|+|++++| +...+.++   +++.+.++++++|++...+..... ...+.+.+  ....+.+   .+....   +. ..
T Consensus        83 aD~Vilav~-~~~~~~v~---~~l~~~l~~~~ivv~~~~~~G~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v  157 (404)
T 3c7a_A           83 ADVVILTVP-AFAHEGYF---QAMAPYVQDSALIVGLPSQAGFEF-QCRDILGDKAAAVSMMSFETLPWACRIKEFGRKV  157 (404)
T ss_dssp             CSEEEECSC-GGGHHHHH---HHHTTTCCTTCEEEETTCCTTHHH-HHHHHHGGGGGTSEEEEESSCSEEEEEEETTTEE
T ss_pred             CCEEEEeCc-hHHHHHHH---HHHHhhCCCCcEEEEcCCCccHHH-HHHHHHHhcCCCeEEEEecCchHhhcccCCCcEE
Confidence            999999997 66788888   788888889999998643332221 11222322  1111222   222111   11 00


Q ss_pred             ---CCC-ceEEE-ecCCHhHHHHHHHHHHHhcCC--eEEeCCc-ChHHH-------HHH------------------HH-
Q 018303          198 ---EDG-QLIFL-AAGDKSLYNTVAPLLDIMGKS--RFYLGDV-GNGAA-------MKL------------------VV-  243 (358)
Q Consensus       198 ---~~~-~~~~~-~~g~~~~~~~v~~ll~~~g~~--~~~~g~~-g~~~~-------~k~------------------~~-  243 (358)
                         ... .+.+- ..++.+..+.+.++++.++..  +....+. +...+       .-.                  .. 
T Consensus       158 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  237 (404)
T 3c7a_A          158 EVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFYQG  237 (404)
T ss_dssp             EEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTTCTTHHHHHHHHHHTTCCSCCBSSCCBSGGG
T ss_pred             EEEEECceEEEEEccCCcchHHHHHHHHHHhCCCCceeEcCCEeeeeecCCceeccHHHHHHHHhhhcCCCCCCCccccC
Confidence               001 11111 111113334566777777763  3333322 11111       001                  11 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHc-----CCCHH---HHHHHHhhcc------ccch--hhhcc-------cccc--cc--
Q 018303          244 --NMIMGSMMATFSEGLLHSEKV-----GLDPN---VLVEVVSQGA------ISAP--MYSLK-------GPSM--IE--  294 (358)
Q Consensus       244 --n~~~~~~~~~~~Ea~~l~~~~-----G~~~~---~~~~~~~~~~------~~s~--~~~~~-------~~~~--~~--  294 (358)
                        +.....+..++.|..+++++.     |+++.   .+.+.+....      ..|.  ++...       .| |  .+  
T Consensus       238 ~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~~~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P-~~~te~~  316 (404)
T 3c7a_A          238 IDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHP-VKAVDGG  316 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTCCCHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCC-EEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCC-CCCcCCC
Confidence              134455678899999999999     99862   2323332211      1111  11110       01 0  00  


Q ss_pred             --CCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303          295 --SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG  341 (358)
Q Consensus       295 --~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g  341 (358)
                        .+...+...+....-++.+.++++++|+++|+++.+.+++.....+.
T Consensus       317 ~~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~~~~~~~  365 (404)
T 3c7a_A          317 VAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQEKIGKE  365 (404)
T ss_dssp             EEECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCC
T ss_pred             ccCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHHHHhCcc
Confidence              01111111111112267899999999999999999999999887653

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.44  E-value=8.5e-13  Score=124.54  Aligned_cols=203  Identities=14%  Similarity=0.103  Sum_probs=125.1

Q ss_pred             CCCC-CeEEEEcCChhHHHHHHHHHHC------CCcEEEEcCCc-cchhhHHhCCCcc----CCCHHHHhhcCCEEEEee
Q 018303           67 DELP-GRIGFLGMGIMGTPMAQNLLKA------GCDVTVWNRTK-SKCDPLISLGAKY----QPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~-~~IgIIG~G~iG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~v  134 (358)
                      .+.+ ++|||||+|+||.++|+.|...      |++|++.+++. ...+...+.|+..    ..++.|++++||+|++++
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            4667 8999999999999999999998      99988766653 3444555667664    258899999999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHH---HHHhcCCeEec-CCCCCCCC----------cCCCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING---HIKATGASFLE-APVSGSKK----------PAEDG  200 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~---~l~~~~~~~~~-~~~~~~~~----------~~~~~  200 (358)
                      |. .....++   .++.+.|++|++|+.. .|...  ..+.+   .+ ..++.++- +|......          ....|
T Consensus       130 P~-~~~~eVl---~eI~p~LK~GaILs~A-aGf~I--~~le~~~i~~-p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~G  201 (525)
T 3fr7_A          130 SD-AAQADNY---EKIFSHMKPNSILGLS-HGFLL--GHLQSAGLDF-PKNISVIAVCPKGMGPSVRRLYVQGKEINGAG  201 (525)
T ss_dssp             CH-HHHHHHH---HHHHHHSCTTCEEEES-SSHHH--HHHHHTTCCC-CTTSEEEEEEESSCHHHHHHHHHHHTTSTTCS
T ss_pred             Ch-HHHHHHH---HHHHHhcCCCCeEEEe-CCCCH--HHHhhhcccC-CCCCcEEEEecCCCchhHHHHHhcccccccCC
Confidence            85 4455677   6788999999996444 43222  12222   11 12344443 34332221          00133


Q ss_pred             ce-EEEecC--CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018303          201 QL-IFLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV  275 (358)
Q Consensus       201 ~~-~~~~~g--~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  275 (358)
                      .. .+....  +.+..+.+..+++++|...+.-.......-..+.  ...+.+...+++.-++..+.+.|++++.++...
T Consensus       202 v~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~  281 (525)
T 3fr7_A          202 INSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNT  281 (525)
T ss_dssp             CCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33 233322  4578899999999999875433332211211122  111223222233233333588999999888766


Q ss_pred             hh
Q 018303          276 SQ  277 (358)
Q Consensus       276 ~~  277 (358)
                      .+
T Consensus       282 ~q  283 (525)
T 3fr7_A          282 VE  283 (525)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.44  E-value=3e-14  Score=136.57  Aligned_cols=110  Identities=15%  Similarity=0.030  Sum_probs=92.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++.+++|||||+|.||+.+|++++.+|++|++||+++.+.......|... .+++++++++|+|++++    .+++++  
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~----~t~~lI--  346 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTAT----GNYHVI--  346 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECS----SSSCSB--
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECC----Cccccc--
Confidence            57788999999999999999999999999999999987543334446654 48999999999999998    467777  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCe
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGAS  184 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~  184 (358)
                      +++.++.||+|++|||++|+.. +++++| ++++++.+.
T Consensus       347 ~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~  384 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK  384 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE
T ss_pred             CHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc
Confidence            6778899999999999999999 498899 788765443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.43  E-value=3.2e-13  Score=123.09  Aligned_cols=113  Identities=19%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++|+|||+|.||+.+++.+..+|++|++|||++++.+.+.+.|...  ..+++++++++|+|++|+|.     +++
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i  228 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MIL  228 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCB
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhh
Confidence            67889999999999999999999999999999999987665555555543  35788999999999999985     345


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                        +++.++.|++++++||++++.....  + +.....|+.+++.|
T Consensus       229 --~~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~p  268 (300)
T 2rir_A          229 --NQTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAP  268 (300)
T ss_dssp             --CHHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred             --CHHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECC
Confidence              4556788999999999999754432  2 34445576766655

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.41  E-value=4.8e-13  Score=121.49  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=87.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--CCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++|+|||+|.||+.+++.++.+|++|+++||++++.+.+.+.|....  .+++++++++|+|++|+|.     +++
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i  226 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVV  226 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCB
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHh
Confidence            577889999999999999999999999999999999876655555565432  4788889999999999985     344


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                        +++.++.|+++.++||+++++....  + +.....|+.++..|
T Consensus       227 --~~~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~  266 (293)
T 3d4o_A          227 --TANVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVP  266 (293)
T ss_dssp             --CHHHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECC
T ss_pred             --CHHHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECC
Confidence              4556778999999999998754332  2 34444566655443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.39  E-value=2.7e-12  Score=129.44  Aligned_cols=189  Identities=16%  Similarity=0.237  Sum_probs=136.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh---------------C-------CCccCCCHHHHhhcC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---------------L-------GAKYQPSPDEVAASC  127 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~---------------~-------g~~~~~~~~~~~~~a  127 (358)
                      -++|||||+|.||..||..++..|++|+++|++++..+...+               .       .+....+.++ +++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            369999999999999999999999999999999875443211               0       1234445544 6899


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA  207 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (358)
                      |+||.++|...++++-+|  +++-+.+++++++-..+++-+++  .+.+.+.. .-.++..+.|..++..   +++-++.
T Consensus       395 DlVIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i~--~ia~~~~~-p~r~ig~HFfnP~~~m---~LVEvi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNVD--DIASSTDR-PQLVIGTHFFSPAHVM---RLLEVIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHH--HHHTTSSC-GGGEEEEECCSSTTTC---CEEEEEE
T ss_pred             CEEEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCChH--HHHhhcCC-ccccccccccCCCCCC---ceEEEec
Confidence            999999999999998775  66777789999888655554444  45554432 2245555555444332   3333333


Q ss_pred             ---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303          208 ---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ  277 (358)
Q Consensus       208 ---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~  277 (358)
                         .+++.++.+..+.+.+|+.++.+.+ +|      ++.|-+..   ..+.|++.++++ |.+++++++.+..
T Consensus       467 g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG------Fi~NRi~~---~~~~ea~~l~~e-G~~~~~id~a~~~  530 (742)
T 3zwc_A          467 SRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRMLA---PYYNQGFFLLEE-GSKPEDVDGVLEE  530 (742)
T ss_dssp             CSSCCHHHHHHHHHHHHHTTCEEEECCCSTT------TTHHHHHH---HHHHHHHHHHHT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccCCCCC------ccHHHHhh---HHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence               3789999999999999999999988 77      45454433   345688888776 7999988888764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.36  E-value=1.8e-12  Score=121.72  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=87.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++.+++|+|+|+|.||+.+|+.+..+|++|+++|+++.+.......|... .+++++++++|+|+++.    .+++++  
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~----gt~~iI--  280 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTT----GNDDII--  280 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECS----SCSCSB--
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECC----CCcCcc--
Confidence            67789999999999999999999999999999999987655555566654 48999999999999744    466777  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLINGH  177 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~  177 (358)
                      +.+.++.|++|++|||++|+.+ ++.+.+.+.
T Consensus       281 ~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            5678899999999999999986 666666543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.34  E-value=1.1e-12  Score=122.76  Aligned_cols=103  Identities=17%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++.+++++|||+|.||+.+|++++.+|++|+++++++.........|... .+++++++++|+|+++++    +++++  
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atg----t~~lI--  316 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTG----NKDVI--  316 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCS----SSSSB--
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCC----Ccccc--
Confidence            67889999999999999999999999999999999886544444556655 489999999999998763    46777  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLING  176 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~  176 (358)
                      +.+.+..||+|++|||++|+.. ++.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            6788899999999999999986 66666653

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.31  E-value=3.2e-14  Score=130.35  Aligned_cols=111  Identities=17%  Similarity=0.292  Sum_probs=89.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHC-CC-cEEEEcCCccchhhHHhC-C--CccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLISL-G--AKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~-g~-~V~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ...++|+|||+|.||..+++.|... |+ +|.+|||++++.+.+.+. +  +..+.+++++++++|+|++|+|.   .+.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCc
Confidence            4567999999999999999999775 76 899999999888877654 4  66678999999999999999984   345


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ++   ..  +.+++|++|+++++..+.. .++.+.+..++..+++
T Consensus       210 v~---~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD  248 (312)
T 2i99_A          210 IL---FG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVD  248 (312)
T ss_dssp             CB---CG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEES
T ss_pred             cc---CH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEEC
Confidence            55   22  5689999999998877754 5666666677788988

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.23  E-value=1.3e-11  Score=115.48  Aligned_cols=95  Identities=14%  Similarity=0.032  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+++|+|+|+|.||+.+|+.++.+|++|+++|+++.+.......|... .+++++++++|+|++|    +.+++++  
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a----tgt~~lI--  289 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC----TGNKNVV--  289 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC----SSCSCSB--
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC----CCCcccC--
Confidence            57889999999999999999999999999999999886554444556544 5899999999999996    3466777  


Q ss_pred             cccccccCCCCCEEEEccCCCh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      +.+.+..|++|++|||++++.+
T Consensus       290 ~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          290 TREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             CHHHHHHSCTTEEEEECSSTTT
T ss_pred             CHHHHHhcCCCcEEEEecCCCc
Confidence            5678899999999999999976

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.22  E-value=1.2e-12  Score=115.07  Aligned_cols=158  Identities=15%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcE-EEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |||||||+|.||+.+++.+...|+++ .+||+++ +.+.       .+.++++++ .++|+|++|+|.. .....+    
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~-~~~~~~----   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQ-AVKDYA----   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHH-HHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHH-HHHHHH----
Confidence            48999999999999999999889997 6899985 3221       467899998 6899999999844 333333    


Q ss_pred             cccccCCCCCEEEEccCCChhHH---HHHHHHHHhcCCe-EecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhc
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTS---KLINGHIKATGAS-FLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG  224 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~---~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g  224 (358)
                        ...++.|+.+++.+.+.....   +++.+..++.+.. +++.++.++......+..    +++...+...++.++..+
T Consensus        68 --~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  141 (236)
T 2dc1_A           68 --EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFGR  141 (236)
T ss_dssp             --HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTTS
T ss_pred             --HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcCc
Confidence              245678999999987765443   6777777777776 678887766543333322    111111111111234467


Q ss_pred             CCeEEeCCcChH-HHHHHHHHHHH
Q 018303          225 KSRFYLGDVGNG-AAMKLVVNMIM  247 (358)
Q Consensus       225 ~~~~~~g~~g~~-~~~k~~~n~~~  247 (358)
                      .++++.|+.+.+ ..++...|...
T Consensus       142 ~~~~~~G~~~~~~~~~~~~~n~~~  165 (236)
T 2dc1_A          142 KGVIFEGSASEAAQKFPKNLNVAA  165 (236)
T ss_dssp             CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred             ceEEEeccHHHHHHHCCchHHHHH
Confidence            777888874322 24444444443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.16  E-value=9.6e-12  Score=116.77  Aligned_cols=97  Identities=20%  Similarity=0.247  Sum_probs=77.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCcc------CCCHHHHhhcCCEEEEeeCChh-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivi~~vp~~~-  138 (358)
                      ++.+++|+|||+|.||+.+++.++.+|++|+++|+++++.+.+.+ .|...      ..+++++++++|+||.+++.+. 
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            466789999999999999999999999999999999887766654 34331      2356778889999999885333 


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .++.++  .++.++.|++|.++||++.
T Consensus       245 ~t~~li--~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLV--SNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCB--CHHHHTTSCTTCEEEEGGG
T ss_pred             CCccee--cHHHHhcCCCCcEEEEEec
Confidence            566666  4677788999999999983

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.11  E-value=9.6e-11  Score=105.24  Aligned_cols=112  Identities=23%  Similarity=0.251  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhh--Hhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~--~~~~  143 (358)
                      ++.+++|+|||+|.||++++..|...|++|.+++|++++.+.+.+. ++....++.++++++|+||+++|....  +...
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~  205 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEI  205 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCC
Confidence            4567899999999999999999999999999999998877666543 555555788889999999999986532  1223


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +   .  .+.++++++++|++. .   ...+.+..++.++.+++
T Consensus       206 i---~--~~~l~~g~~viDv~~-~---~t~ll~~a~~~g~~~v~  240 (275)
T 2hk9_A          206 F---N--YDLIKKDHVVVDIIY-K---ETKLLKKAKEKGAKLLD  240 (275)
T ss_dssp             S---C--GGGCCTTSEEEESSS-S---CCHHHHHHHHTTCEEEC
T ss_pred             C---C--HHHcCCCCEEEEcCC-C---hHHHHHHHHHCcCEEEC
Confidence            3   1  345789999999988 2   12345555556665553

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.11  E-value=2.5e-10  Score=101.82  Aligned_cols=111  Identities=20%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChh--hHhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPE--SAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~--~~~~~  143 (358)
                      ++.+ +|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+. +.. ..+++++ +++|+|++|+|.+.  .+...
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~  190 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASP  190 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCC
Confidence            4667 99999999999999999999999999999998776665542 444 4577888 99999999998653  12233


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +   .  .+.++++++++|++.... .. .+.+.+++.++.+++
T Consensus       191 l---~--~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~~~v~  227 (263)
T 2d5c_A          191 L---P--AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGLKVQT  227 (263)
T ss_dssp             S---C--GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred             C---C--HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcCEEEC
Confidence            3   1  356789999999987643 33 466777776766553

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.11  E-value=1.7e-10  Score=111.01  Aligned_cols=103  Identities=13%  Similarity=0.073  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ...+++|+|||+|.||+.+|+.++.+|++|+++|+++.+.+...+.|+.. .+++++++++|+|+.|++.    .+++  
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt----~~~i--  343 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGN----KDII--  343 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSS----SCSB--
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCC----HHHH--
Confidence            45678999999999999999999999999999999988776666677764 5788999999999999863    3355  


Q ss_pred             cccccccCCCCCEEEEccCCCh-hHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG-DTSKLING  176 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~  176 (358)
                      +.+.++.|++|.+++|++++.. ++..++..
T Consensus       344 ~~~~l~~mk~ggilvnvG~~~~eId~~aL~~  374 (494)
T 3ce6_A          344 MLEHIKAMKDHAILGNIGHFDNEIDMAGLER  374 (494)
T ss_dssp             CHHHHHHSCTTCEEEECSSSGGGBCHHHHHH
T ss_pred             HHHHHHhcCCCcEEEEeCCCCCccCHHHHHH
Confidence            3466788999999999999876 56666655

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.06  E-value=5.4e-10  Score=89.40  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=84.6

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      +.++|+|||+    |+||..+++.|.+.|++|+.++++.+..     .|...+.++.|+.+.+|++++++| ++....++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~   86 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA   86 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence            3468999999    9999999999999999977777764332     467778899999999999999998 78888888


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP  189 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~  189 (358)
                         .+..+ ...+.++++.++.    .+++.+.+++.|+.+++..
T Consensus        87 ---~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~igpn  123 (138)
T 1y81_A           87 ---KEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSFGR  123 (138)
T ss_dssp             ---HHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEECSC
T ss_pred             ---HHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEcCC
Confidence               55554 4556677766542    4678888888899998743

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.02  E-value=5.1e-10  Score=103.75  Aligned_cols=96  Identities=22%  Similarity=0.355  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC-------------------------CHHH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-------------------------SPDE  122 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~-------------------------~~~~  122 (358)
                      ..+.+|+|||+|.||...++.+..+|.+|+++|+++++.+.+.+.|..+..                         ++.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            466899999999999999999999999999999999888877776654432                         4568


Q ss_pred             HhhcCCEEEEeeCCh-hhHhhhhcccccccccCCCCCEEEEccC
Q 018303          123 VAASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       123 ~~~~aDivi~~vp~~-~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +++++|+||.++..+ .....++  +++.++.|++|.+|||++-
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lv--t~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLV--TAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCB--CHHHHHTSCTTCEEEETTG
T ss_pred             HHhcCCEEEECCCCCCcccceee--cHHHHhcCCCCcEEEEEeC
Confidence            889999999986222 2345556  5788899999999999964

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.00  E-value=4.4e-10  Score=90.77  Aligned_cols=89  Identities=17%  Similarity=0.254  Sum_probs=71.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++|+|||+|.||+.+++.|...|++|.+++|++++.+.+.+. +..  ...++.++++++|+|+.++|.+   ..++  
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~--   95 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIV--   95 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSB--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEe--
Confidence            6799999999999999999999999999999999887765442 432  4568889999999999999865   2233  


Q ss_pred             cccccccCCCCCEEEEccCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .  ...+++|.+++|++..
T Consensus        96 -~--~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           96 -E--ERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             -C--GGGCCTTCEEEECCSS
T ss_pred             -e--HHHcCCCCEEEEccCC
Confidence             1  1457889999999753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.98  E-value=1.1e-09  Score=102.42  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----------------------------C
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----------------------------P  118 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----------------------------~  118 (358)
                      ..+.+|+|||+|.||...++.+..+|.+|+++|+++.+.+.+.+.|..+.                             .
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            45679999999999999999999999999999999988777766555321                             1


Q ss_pred             CHHHHhhcCCEEEEeeCCh-hhHhhhhcccccccccCCCCCEEEEccC
Q 018303          119 SPDEVAASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       119 ~~~~~~~~aDivi~~vp~~-~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++.++++++|+||.++..+ .....++  +++.++.|++|++|||++.
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lv--t~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLV--TREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCB--CHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEe--cHHHHhcCCCCCEEEEEeC
Confidence            4677889999999986322 2345555  5788899999999999974

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.90  E-value=2.1e-09  Score=101.49  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC---------------------------C
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP---------------------------S  119 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~---------------------------~  119 (358)
                      ++.+.+|+|||+|.+|...++.+..+|++|+++|+++++.+.+.+.|...+.                           +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            4567899999999999999999999999999999999887776666655432                           2


Q ss_pred             HHHHhhcCCEEEEeeCC-hhhHhhhhcccccccccCCCCCEEEEcc
Q 018303          120 PDEVAASCDVTFAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       120 ~~~~~~~aDivi~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      +.++++.+|+||.++.. ......++  +++.++.|++|.+|||++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li--~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLI--TREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCB--CHHHHHTSCTTCEEEETT
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeee--CHHHHhcCCCCcEEEEEc
Confidence            56778889999999422 22344555  356778899999999998

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.88  E-value=1.8e-09  Score=87.18  Aligned_cols=105  Identities=17%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCc--cchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTK--SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      .++|+|||+    |+||..+++.|.+.|++|+.++++.  +..     .|...+.++.|+.+.+|++++++| +.....+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v   86 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRN-SEAAWGV   86 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSC-STHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHH
Confidence            358999999    8999999999999999977777754  322     367777889998889999999998 6788888


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      +   .++.+ ...+.++++.++.    .+++.+.+++.|+.++..
T Consensus        87 ~---~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~igp  123 (145)
T 2duw_A           87 A---QEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVMD  123 (145)
T ss_dssp             H---HHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEECS
T ss_pred             H---HHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEcC
Confidence            8   55554 4455666665432    567888888899999863

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.87  E-value=4.2e-09  Score=96.98  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.+++|+|+|+|++|+.+|+.+..+|++|+++|+++++.+...+.+.... +.++++. +||+++-|     ++.+++ 
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I-  244 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVI-  244 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCB-
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhc-
Confidence            578899999999999999999999999999999998764222333455554 6778877 89999743     466677 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                       +.+.++.|+ .++|++.++++..++++ .+.+.++++.++
T Consensus       245 -~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv~  282 (355)
T 1c1d_A          245 -TTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILYA  282 (355)
T ss_dssp             -CHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEEC
T ss_pred             -CHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEEE
Confidence             555566776 78999999998776555 588888886664

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.86  E-value=2.2e-09  Score=99.36  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-C-CCcEEEEcCCccchhhHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      ...++|+|||+|.||+.+++.+.. . ..+|.+|||++++.+.+.+.     |  +..+.+++++++++|+|++|+|.. 
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-  205 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-  205 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-
Confidence            345799999999999999998754 3 46899999999888777653     4  345678999999999999999864 


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      ....++   .  .+.+++|++++++++..|. ..++...+..++..|+|.
T Consensus       206 ~~~pvl---~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~  249 (350)
T 1x7d_A          206 AYATII---T--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY  249 (350)
T ss_dssp             SEEEEE---C--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred             CCCcee---c--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence            233454   1  2468899999999887665 233444444445567764

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.82  E-value=1.4e-08  Score=92.68  Aligned_cols=111  Identities=13%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCChhHHH-HHHHHHH-CCCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           68 ELPGRIGFLGMGIMGTP-MAQNLLK-AGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~-~a~~l~~-~g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      +..++|||||+|.||.. +++.+.. .+.++. ++|+++++.+.+.+. |+..+++++++++++|+|++|+|.....+.+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~   83 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII   83 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH
Confidence            34579999999999996 8888876 467776 799999887776553 6666889999999999999999866554444


Q ss_pred             hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.-  ....+.+.+++.+..++.++.+
T Consensus        84 ~-------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~  120 (308)
T 3uuw_A           84 K-------ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNL  120 (308)
T ss_dssp             H-------HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCE
T ss_pred             H-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            3       335567666543  4456677788888887776544

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.81  E-value=1.7e-08  Score=93.92  Aligned_cols=112  Identities=11%  Similarity=0.089  Sum_probs=83.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhh--cCCEEEEeeCChhhHh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAM  141 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~  141 (358)
                      ...++|||||+|.||..++..+.+.  ++++. ++|+++++.+.+.+ .++..+++++++++  ++|+|++|+|...+.+
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   90 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPT   90 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence            3456999999999999999999886  67755 79999888776654 37788899999997  7999999998655544


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      .+.       ..+..|+.++.-  -.....+.+++.+..++.+..+.
T Consensus        91 ~~~-------~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~  130 (354)
T 3q2i_A           91 QSI-------ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLF  130 (354)
T ss_dssp             HHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHH-------HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            443       345567766653  23456677788888877765543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.80  E-value=3.4e-08  Score=78.65  Aligned_cols=90  Identities=19%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCcc----CCCHHHH----hhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY----QPSPDEV----AASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~----~~~~~~~----~~~aDivi~~vp~~~~~  140 (358)
                      +|+|+|+|+|.+|..+++.|.+.|++|.+++++++..+.+.+. +...    ..+.+.+    ++++|+|++++|.+. .
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~-~   82 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE-V   82 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH-H
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch-H
Confidence            4799999999999999999999999999999998877666542 4422    1233222    567999999998553 3


Q ss_pred             hhhhcccccccccCCCCCEEEEc
Q 018303          141 MDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      ...+   ......+.++.+++.+
T Consensus        83 ~~~~---~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           83 NLMS---SLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHHH---HHHHHHTTCCCEEEEC
T ss_pred             HHHH---HHHHHHcCCCEEEEEe
Confidence            3333   3344556677766644

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.78  E-value=8.2e-09  Score=96.56  Aligned_cols=97  Identities=23%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCcc------CCCHHHHhhcCCEEEEeeCChh-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY------QPSPDEVAASCDVTFAMLADPE-  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~------~~~~~~~~~~aDivi~~vp~~~-  138 (358)
                      ++.+++|+|+|+|.||..+++.++.+|++|+++|+++++.+.+.+ .+...      ..+++++++++|+||.+++.+. 
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA  242 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence            466789999999999999999999999999999999887665544 33321      2345677889999999998554 


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+..++  .++.++.|+++.++||++.
T Consensus       243 ~~~~li--~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          243 KAPKLV--TRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ---CCS--CHHHHTTSCTTCEEEECC-
T ss_pred             ccchhH--HHHHHHhhcCCCEEEEEec
Confidence            455555  3667788999999999984

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.78  E-value=1.2e-08  Score=94.51  Aligned_cols=110  Identities=13%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++|+|+|+|+||..+|+.|.+.|++|+++|+++++++.+.+. +.... +.++++. +||+++.|.     +.+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence            5788999999999999999999999999999999998877655543 55544 5566665 899998775     44455


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                        +.+.++.+ ...+|++.++++...+ +..+.+.++++.++
T Consensus       244 --~~~~~~~l-g~~iV~e~An~p~t~~-ea~~~L~~~Gi~~~  281 (364)
T 1leh_A          244 --NDFTIPQL-KAKVIAGSADNQLKDP-RHGKYLHELGIVYA  281 (364)
T ss_dssp             --STTHHHHC-CCSEECCSCSCCBSSH-HHHHHHHHHTCEEC
T ss_pred             --CHHHHHhC-CCcEEEeCCCCCcccH-HHHHHHHhCCCEEe
Confidence              33444555 4567777777665443 36677888887554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.77  E-value=1.5e-08  Score=94.07  Aligned_cols=113  Identities=15%  Similarity=0.159  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCChhHH-HHHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~-~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~~~~~  140 (358)
                      .+..++|||||+|.||. .++..+... +++|. ++|+++++.+.+.+. |+..+.+++++++  +.|+|++|+|.....
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~  103 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA  103 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence            44557999999999998 789999876 67765 789998887766553 7777789999997  489999999866555


Q ss_pred             hhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          141 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +.+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus       104 ~~~~-------~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~  144 (350)
T 3rc1_A          104 EWID-------RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLM  144 (350)
T ss_dssp             HHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            4443       345567765542  24466777888888887775443

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.76  E-value=2e-08  Score=94.36  Aligned_cols=96  Identities=19%  Similarity=0.271  Sum_probs=75.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--CC-------------------------
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PS-------------------------  119 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~-------------------------  119 (358)
                      ++.+++|+|+|+|.+|...++.++.+|++|+++|+++.+.+.+.+.|....  +.                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            456789999999999999999999999999999999888777666665433  11                         


Q ss_pred             --HHHHhhcCCEEEEeeCCh-hhHhhhhcccccccccCCCCCEEEEcc
Q 018303          120 --PDEVAASCDVTFAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       120 --~~~~~~~aDivi~~vp~~-~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                        +.++++.+|+||.+++.+ .....++  +++.++.|++|.++||++
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li--~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeee--CHHHHhcCCCCCEEEEEe
Confidence              667788999999988321 1233444  356678899999999998

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.75  E-value=3.6e-08  Score=91.87  Aligned_cols=109  Identities=20%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~  145 (358)
                      ..+|||||+|.||...+..+... +++|. ++|+++++.+...+.|+..++|++++++  +.|+|++|+|.....+.+. 
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~-   83 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI-   83 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH-
Confidence            46899999999999999999876 67765 6899988776555568888899999998  7899999998655554443 


Q ss_pred             ccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          146 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                            ..++.|+.|+.-  ......+.+++.+..++.++.+
T Consensus        84 ------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (359)
T 3e18_A           84 ------SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHF  119 (359)
T ss_dssp             ------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             ------HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence                  345677766643  2445667778888887766543

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.74  E-value=2.5e-08  Score=91.25  Aligned_cols=102  Identities=14%  Similarity=0.071  Sum_probs=71.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h--------CCCccCCCHHHHhhcCCEEEEeeC-
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLA-  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivi~~vp-  135 (358)
                      .++|+|||+|.||..+|..|+..|+ +|.+||+++++.+...    +        ..+..+.+. +.+++||+||++++ 
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            3689999999999999999999998 9999999987665421    1        023333566 77899999999993 


Q ss_pred             -------------Chhh-HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHH
Q 018303          136 -------------DPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING  176 (358)
Q Consensus       136 -------------~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~  176 (358)
                                   .+.. .+.++   +++.+. .+++++++.++........+.+
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~---~~i~~~-~~~~iii~~sNp~~~~~~~~~~  133 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVA---EGVKKY-CPNAFVICITNPLDVMVSHFQK  133 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEeCChHHHHHHHHHH
Confidence                         2222 34444   455444 4689999888754444444444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.74  E-value=4.3e-08  Score=82.18  Aligned_cols=94  Identities=12%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCCCccC----CCH---HHH--hhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ----PSP---DEV--AASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~----~~~---~~~--~~~aDivi~~vp~  136 (358)
                      +..+++|.|+|+|.||..+++.|.+. |++|.++|+++++.+.+.+.|....    .+.   .++  ++++|+|++++|.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            34567899999999999999999998 9999999999988887776665432    222   233  5679999999987


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEcc
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ......++   . ....+.+...++..+
T Consensus       116 ~~~~~~~~---~-~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          116 HQGNQTAL---E-QLQRRNYKGQIAAIA  139 (183)
T ss_dssp             HHHHHHHH---H-HHHHTTCCSEEEEEE
T ss_pred             hHHHHHHH---H-HHHHHCCCCEEEEEE
Confidence            66555554   2 334455566666443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.73  E-value=3e-08  Score=92.19  Aligned_cols=109  Identities=18%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHh--hcCCEEEEeeCChhhHhhhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVA--ASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~--~~aDivi~~vp~~~~~~~~~  144 (358)
                      .++|||||+|.||..++..+... +++|. ++|+++++.+.+.+ .|+..++++++++  .+.|+|++|+|...+.+.+.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   84 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIE   84 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            46899999999999999999876 77755 78999888776654 3777788999999  56999999999766555544


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|+.++..  ......+.+++.+..++.++.+
T Consensus        85 -------~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~  120 (354)
T 3db2_A           85 -------QCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKF  120 (354)
T ss_dssp             -------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCE
T ss_pred             -------HHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeE
Confidence                   345567655543  2445667778888887776544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.73  E-value=2.2e-08  Score=90.67  Aligned_cols=115  Identities=18%  Similarity=0.113  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CC---ccC--CCHHHHhhcCCEEEEeeCChhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GA---KYQ--PSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~---~~~--~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ++.+++++|||+|.||+.++..|...|. +|++++|++++.+.+.+. +.   ...  .++.+.+.++|+||.++|.+..
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4567899999999999999999999998 899999998887766543 22   111  2455667889999999986542


Q ss_pred             H--hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          140 A--MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       140 ~--~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .  +.+.+ +   ...++++.+++|++.. |..+ .+.+..++.|..+++
T Consensus       218 ~~~~~~~i-~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~  261 (297)
T 2egg_A          218 PRVEVQPL-S---LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQN  261 (297)
T ss_dssp             SCCSCCSS-C---CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred             CCCCCCCC-C---HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEEC
Confidence            1  11110 1   2457899999999885 4433 366677777766654

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.72  E-value=4.2e-08  Score=90.33  Aligned_cols=108  Identities=17%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|||||+|.||..+++.+... ++++. ++|+++++.+.+.+ .++. +.+++++++  ++|+|++|+|...+.+.+. 
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~-   81 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE-   81 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH-
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH-
Confidence            5899999999999999999885 67766 69999888776654 4677 889999998  7999999998665555443 


Q ss_pred             ccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                            ..++.|+.++.-  ....+.+.+++.+..++.++.+.
T Consensus        82 ------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (331)
T 4hkt_A           82 ------RFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLM  118 (331)
T ss_dssp             ------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ------HHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Confidence                  234566665543  24566777788888887776543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.72  E-value=3.4e-08  Score=91.47  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=81.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      +++|||||+|.||..+++.+... +++|. ++|+++++.+.+.+. |...+.+++++++  ++|+|++|+|.....+.+.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   83 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLIT   83 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHH
Confidence            35899999999999999999886 67766 799999887776553 7777889999998  7999999998655554443


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|+.++.-  ....+.+.+++.+..++.++.+
T Consensus        84 -------~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~  119 (344)
T 3euw_A           84 -------RAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKV  119 (344)
T ss_dssp             -------HHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGE
T ss_pred             -------HHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeE
Confidence                   234556555432  2445667778888887766544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.72  E-value=1.5e-08  Score=90.57  Aligned_cols=114  Identities=17%  Similarity=0.045  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCC-CccCCCHHHHhhcCCEEEEeeCChh--hHhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLG-AKYQPSPDEVAASCDVTFAMLADPE--SAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~aDivi~~vp~~~--~~~~  142 (358)
                      ++.++++.|||+|.+|++++..|...|. +|.+++|++++.+.+.... .....++.++++++|+||.++|...  ....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4567899999999999999999999998 8999999998876654321 1122345666789999999998642  2222


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .+  +   ...++++.+++|+...+..+  .+.+..++.|+..++
T Consensus       194 ~l--~---~~~l~~~~~V~D~vY~P~~T--~ll~~A~~~G~~~~~  231 (277)
T 3don_A          194 VI--S---LNRLASHTLVSDIVYNPYKT--PILIEAEQRGNPIYN  231 (277)
T ss_dssp             SS--C---CTTCCSSCEEEESCCSSSSC--HHHHHHHHTTCCEEC
T ss_pred             CC--C---HHHcCCCCEEEEecCCCCCC--HHHHHHHHCcCEEeC
Confidence            22  1   34578999999998764433  466666777655443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.70  E-value=4.4e-08  Score=90.20  Aligned_cols=111  Identities=12%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-CCC-ccCCCHHHHhh--cCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAA--SCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~--~aDivi~~vp~~~~~~~  142 (358)
                      ..++|||||+|.||..+++.+... +++|. ++|+++++.+.+.+ .++ ..+++++++++  ++|+|++|+|.....+.
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   83 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSA   83 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHH
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHH
Confidence            346899999999999999999884 66766 78999888776654 365 46789999998  79999999986655544


Q ss_pred             hhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          143 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +.       ..++.|+.|+.-  ......+.+++.+..++.++.+.
T Consensus        84 ~~-------~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~  122 (330)
T 3e9m_A           84 AK-------LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLM  122 (330)
T ss_dssp             HH-------HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            43       234566655432  24456677788888887776543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.70  E-value=5.2e-08  Score=88.85  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhC----------CCcc-CCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL----------GAKY-QPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~----------g~~~-~~~~~~~~~~aDivi~~vp~~  137 (358)
                      |+|+|||+|.||..+|..|...|  ++|.++|+++++.+.+...          .+.. ..+. +.++++|+||+++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            68999999999999999999888  7999999998766554321          1232 3566 7788999999999865


Q ss_pred             hh-------------------HhhhhcccccccccCCCCCEEEEccCC
Q 018303          138 ES-------------------AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       138 ~~-------------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ..                   .+.++   +.+.+. .+++++++.++.
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~-~~~~~ii~~tNp  124 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMVQSVG---TNLKES-GFHGVLVVISNP  124 (309)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHH---HHHHHT-TCCSEEEECSSS
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCcEEEEEcCc
Confidence            42                   34454   444443 467788876554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.69  E-value=3.3e-08  Score=76.25  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCcc----C---CCHHHHhhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKY----Q---PSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~----~---~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      +++|+|+|+|.||+.+++.|...| ++|.+++|++++.+.+...++..    .   .++.++++++|+||.++|. ....
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~-~~~~   83 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF-FLTP   83 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG-GGHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc-hhhH
Confidence            468999999999999999999999 99999999988777665444321    1   2344667889999999973 3444


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHH
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI  178 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  178 (358)
                      .++   ..   ..+.|..+++.+. .+...+.+.+..
T Consensus        84 ~~~---~~---~~~~g~~~~~~~~-~~~~~~~~~~~~  113 (118)
T 3ic5_A           84 IIA---KA---AKAAGAHYFDLTE-DVAATNAVRALV  113 (118)
T ss_dssp             HHH---HH---HHHTTCEEECCCS-CHHHHHHHHHHH
T ss_pred             HHH---HH---HHHhCCCEEEecC-cHHHHHHHHHHH
Confidence            444   22   2456777887764 344445554443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.68  E-value=9e-08  Score=88.08  Aligned_cols=110  Identities=11%  Similarity=0.170  Sum_probs=79.2

Q ss_pred             CeEEEEcCChhHHHH-HHHHHHCCCcEE-EEcCCccchhhHHh-CCCc-cCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTPM-AQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAK-YQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~-a~~l~~~g~~V~-~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      ++|||||+|.||+.+ +..+...++++. ++|+++++.+.+.+ .++. .+++.+++++  ++|+|++++|.....+.+.
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            479999999999998 888877778765 78999887766554 3553 6778999987  4999999998554433333


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEec
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                             ..++.|+.|+..  ......+.+++.+..++.++.+..
T Consensus        81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~  118 (332)
T 2glx_A           81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGT  118 (332)
T ss_dssp             -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence                   345678755543  234566677888888777765543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.67  E-value=2.6e-08  Score=91.13  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      ..++|||||+|.||..+++.+.+. ++++ .++|+++++.+.+.+. +..+.+.+++++  ++|+|++++|.....+.+.
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   87 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL   87 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH
Confidence            346899999999999999999885 5664 5899998776655444 556778999986  7999999998554443333


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                             ..++.|+.++..  ......+.+++.+..++.++.+.
T Consensus        88 -------~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~  124 (315)
T 3c1a_A           88 -------AAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVW  124 (315)
T ss_dssp             -------HHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             -------HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence                   345677755432  33456677788888877765543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.67  E-value=1.1e-07  Score=87.10  Aligned_cols=110  Identities=18%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHH-CCCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLK-AGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~-~g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|||||+|.||.. ++..+.. .++++. ++|+++++.+.+.+. |+..+++.+++..++|+|++++|.....+.+. 
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~-   83 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS-   83 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH-
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH-
Confidence            468999999999996 8888876 467765 899999887766543 66667788887678999999998655544443 


Q ss_pred             ccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                            ..++.|+.|+..  ......+.+++.+..++.++.+.
T Consensus        84 ------~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~  120 (319)
T 1tlt_A           84 ------TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLM  120 (319)
T ss_dssp             ------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence                  245577754432  34456677788888887776543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.67  E-value=1.9e-08  Score=88.81  Aligned_cols=107  Identities=17%  Similarity=0.071  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHh-hhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAM-DVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~-~~~  144 (358)
                      ..+ +++|||+|.||++++..|...|. +|.+++|++++.+.+.+. +.....++.+.++++|+||.++|....-. ..+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            456 89999999999999999999998 899999998877665443 22234567788899999999998532211 112


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                        +   ...++++.+++|+...   .. .+.+..++.|+.
T Consensus       186 --~---~~~l~~~~~V~Divy~---~T-~ll~~A~~~G~~  216 (253)
T 3u62_A          186 --S---DDSLKNLSLVYDVIYF---DT-PLVVKARKLGVK  216 (253)
T ss_dssp             --C---HHHHTTCSEEEECSSS---CC-HHHHHHHHHTCS
T ss_pred             --C---HHHhCcCCEEEEeeCC---Cc-HHHHHHHHCCCc
Confidence              1   1346789999999877   22 344444445544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.66  E-value=2.9e-08  Score=90.94  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-C-CCcEEEEcCCccchhhHHhC------CCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISL------GAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ...++|+|||+|.||+.+++.+.. . ..+|.+|||++++.+.+.+.      .+. +.++++++ ++|+|++|+|..  
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~--  198 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR--  198 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS--
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC--
Confidence            345799999999999999999987 3 46799999999888776642      234 67899999 999999999853  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       ..++   .  ...+++|++|++++...|.
T Consensus       199 -~pv~---~--~~~l~~G~~V~~ig~~~p~  222 (322)
T 1omo_A          199 -KPVV---K--AEWVEEGTHINAIGADGPG  222 (322)
T ss_dssp             -SCCB---C--GGGCCTTCEEEECSCCSTT
T ss_pred             -Ccee---c--HHHcCCCeEEEECCCCCCC
Confidence             2444   1  2468899999999776654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.65  E-value=1.7e-07  Score=86.49  Aligned_cols=110  Identities=17%  Similarity=0.280  Sum_probs=82.2

Q ss_pred             CCeEEEEcCChhHH-HHHHHHHHCCCcE-EEEcCCccchhhHHhC--CCccCCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGMGIMGT-PMAQNLLKAGCDV-TVWNRTKSKCDPLISL--GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~G~iG~-~~a~~l~~~g~~V-~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~  143 (358)
                      .++|||||+|.+|. .++..+...+++| .++|+++++.+.+.+.  +...+.|.+++++  +.|+|++|+|...+.+.+
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   83 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA   83 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH
Confidence            46999999999996 6778787778885 5899999888776653  5677889999997  589999999866555544


Q ss_pred             hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      .       ..++.|+.|+.-  ......+.+++.+..++.++.+.
T Consensus        84 ~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~  121 (336)
T 2p2s_A           84 L-------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA  121 (336)
T ss_dssp             H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred             H-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            4       345678755543  34456677788888877765443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.64  E-value=2.8e-08  Score=88.19  Aligned_cols=111  Identities=18%  Similarity=0.096  Sum_probs=80.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ++++.|||+|.+|++++..|...|.+|.+++|++++.+.+.+.++... +.+++ .++|+||.++|........+  +.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l--~~~  193 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL--NKE  193 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC--ChH
Confidence            689999999999999999999999999999999999887764444332 33343 38999999998653322222  222


Q ss_pred             -ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          150 -AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       150 -~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       +.+.++++.+++|+...+  .+ .+.+..++.|+..++
T Consensus       194 ~l~~~l~~~~~v~D~vY~P--~T-~ll~~A~~~G~~~~~  229 (269)
T 3phh_A          194 VLKGYFKEGKLAYDLAYGF--LT-PFLSLAKELKTPFQD  229 (269)
T ss_dssp             HHHHHHHHCSEEEESCCSS--CC-HHHHHHHHTTCCEEC
T ss_pred             HHHhhCCCCCEEEEeCCCC--ch-HHHHHHHHCcCEEEC
Confidence             122467899999998865  33 366667777765544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.63  E-value=9.2e-08  Score=89.03  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-H-CCCcEE-EEcCCccchhhHHhC-C--CccCCCHHHHhhc--CCEEEEeeCChhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLISL-G--AKYQPSPDEVAAS--CDVTFAMLADPES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~-~-~g~~V~-~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~--aDivi~~vp~~~~  139 (358)
                      +..++|||||+|.||+.+++.+. . .++++. ++|+++++.+.+.+. |  ...+.++++++++  .|+|++|+|....
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            44568999999999999999998 4 467765 799999887766543 5  5678899999974  8999999986655


Q ss_pred             HhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.+.       ..++.|+.|+.-  -.....+.+++.+..++.+..+
T Consensus       101 ~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  141 (357)
T 3ec7_A          101 ADVAV-------AALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM  141 (357)
T ss_dssp             HHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHH-------HHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence            54444       345567766643  2445667778888887776543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.63  E-value=5.8e-08  Score=92.54  Aligned_cols=94  Identities=16%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++.+++++|+|+|.||+.+|+.|+.+|.+|+++|+++.+.......+... .+.++++..+|+|+.+..    ..+++  
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG----~~~vl--  334 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTG----NKDII--  334 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSS----CSCSB--
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCC----Chhhh--
Confidence            47789999999999999999999999999999999987766666666543 578899999999998763    33445  


Q ss_pred             cccccccCCCCCEEEEccCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      +.+.+..|+++.+|+|.++..
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSSTT
T ss_pred             hHHHHHhcCCCeEEEEcCCCC
Confidence            344678899999999999863

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.62  E-value=8.2e-08  Score=88.86  Aligned_cols=108  Identities=17%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      +||||||+|.||..+++.+... ++++. ++|+++++.+.+.+. ++ ..+.+++++++  ++|+|++|+|.....+.+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   82 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence            5899999999999999999874 66765 689998887766543 55 36789999998  7999999998655444443


Q ss_pred             cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|+.++.-  ....+.+.+++.+..++.++.+
T Consensus        83 -------~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~  118 (344)
T 3ezy_A           83 -------ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVIL  118 (344)
T ss_dssp             -------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCE
T ss_pred             -------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcE
Confidence                   335567655543  2456677788888887776544

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.62  E-value=1e-07  Score=86.77  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..++|+|||+|.||..+++.+.. .+ .+|.+|||+  +.+.+.+     .|+  ... +++++++++|+|++|+|..  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~--  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST--  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC--
Confidence            45799999999999999999976 33 579999999  5454433     244  345 8999999999999999853  


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                       ..++   .  .+.+++|++|+++++..|.
T Consensus       195 -~pvl---~--~~~l~~G~~V~~vGs~~p~  218 (313)
T 3hdj_A          195 -TPLF---A--GQALRAGAFVGAIGSSLPH  218 (313)
T ss_dssp             -SCSS---C--GGGCCTTCEEEECCCSSTT
T ss_pred             -Cccc---C--HHHcCCCcEEEECCCCCCc
Confidence             3455   2  2468999999999887664

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.61  E-value=1.3e-07  Score=76.99  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-hCCCccC----CCHHH---H-hhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ----PSPDE---V-AASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~----~~~~~---~-~~~aDivi~~vp~~  137 (358)
                      ...+++|.|+|+|.+|+.+++.|...|++|+++++++++.+.+. ..|....    .+.+.   + +.++|+|++++|.+
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            34567999999999999999999999999999999988877665 4443221    12222   2 56799999999865


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .....+.    .....+.+...++...+.
T Consensus        96 ~~~~~~~----~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           96 STNFFIS----MNARYMFNVENVIARVYD  120 (155)
T ss_dssp             HHHHHHH----HHHHHTSCCSEEEEECSS
T ss_pred             HHHHHHH----HHHHHHCCCCeEEEEECC
Confidence            4433333    333444455555554443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.61  E-value=1.6e-07  Score=86.36  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCc-cCCCHHHHhh--cCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAK-YQPSPDEVAA--SCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~--~aDivi~~vp~~~~~~~  142 (358)
                      ..++|||||+|.||..++..+... +.++. ++|+++++.+.+.+. ++. .+.+++++++  +.|+|++++|.....+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   83 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV   83 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            346899999999999999999865 45554 789999887776654 553 6789999998  79999999986555444


Q ss_pred             hhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          143 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        84 ~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~  122 (329)
T 3evn_A           84 AK-------AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLM  122 (329)
T ss_dssp             HH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HH-------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            43       345667766643  23456677788888887776543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.60  E-value=1.6e-07  Score=86.81  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=79.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH-H-CCCcE-EEEcCCccchhhHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLL-K-AGCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~-~-~g~~V-~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~vp~~~~~~  141 (358)
                      ..++|||||+|.||..+++.+. . .++++ .++|+++++.+.+.+. |+ ..+.+.+++++  ++|+|++|+|.....+
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~   86 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE   86 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH
Confidence            3469999999999999999998 5 46774 5789998887766553 66 56789999986  6999999998554444


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhc-CCeEe
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKAT-GASFL  186 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~-~~~~~  186 (358)
                      .+.       ..++.|+.|+..  ......+.+++.+..++. ++.+.
T Consensus        87 ~~~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~  127 (346)
T 3cea_A           87 MTI-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQ  127 (346)
T ss_dssp             HHH-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred             HHH-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEE
Confidence            443       345567766543  233455666777777766 65543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.60  E-value=1.1e-07  Score=88.65  Aligned_cols=109  Identities=7%  Similarity=0.028  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC--CCccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      +.++|||||+|.||.. +++.+... +.++. ++|+++++.+.+.+.  +...+.++++++++  .|+|++|+|.....+
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~   83 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFE   83 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence            3468999999999995 88998875 67765 789999888777664  45677899999985  499999998554444


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCe
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      .+.       ..++.|+.|+.-  ......+.+++.+..++.++.
T Consensus        84 ~~~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~  121 (359)
T 3m2t_A           84 MGL-------LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVV  121 (359)
T ss_dssp             HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCE
Confidence            443       345677766643  234556777788887776643

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.58  E-value=1.1e-07  Score=86.35  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-CCCcEE-EEcCCccchhhHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      +..++|||||+|+||+.+++.+.+ .++++. ++|+++++.+.   .|+..  .+++.+. .++|+|++|+|.....+.+
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~   82 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTA   82 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHH
Confidence            345699999999999999999987 467776 69998876553   44432  3344444 6899999999855444333


Q ss_pred             hcccccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCCe
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS  184 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~  184 (358)
                      .       ..++.|+.+++....   .....+.+.+..++.+..
T Consensus        83 ~-------~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           83 L-------EILKKGICTADSFDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             H-------HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             H-------HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCE
Confidence            3       346678888876432   334456777777776654

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.58  E-value=1.3e-07  Score=87.56  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=80.6

Q ss_pred             CeEEEEcCChhHHHHHHHHH-H-CCCcEE-EEcCCccchhhHHh-CC--CccCCCHHHHhhc--CCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLL-K-AGCDVT-VWNRTKSKCDPLIS-LG--AKYQPSPDEVAAS--CDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~-~-~g~~V~-~~~~~~~~~~~~~~-~g--~~~~~~~~~~~~~--aDivi~~vp~~~~~~~  142 (358)
                      ++|||||+|.||..++..+. . .++++. ++|+++++.+.+.+ .|  ...++++++++++  +|+|++|+|...+.+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            48999999999999999998 5 467765 78999888776654 35  5678899999986  8999999986555444


Q ss_pred             hhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          143 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      +.       ..++.|+.|+.-  ......+.+++.+..++.+..+
T Consensus        83 ~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~  120 (344)
T 3mz0_A           83 VL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL  120 (344)
T ss_dssp             HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred             HH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence            43       345677766643  2345667778888887776544

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.57  E-value=2e-07  Score=85.83  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=80.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---Cc-EEEEcCCccchhhHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG---CD-VTVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g---~~-V~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~vp~~~~~~~  142 (358)
                      +||||||+|.||..+++.+...+   ++ |.++|+++++.+.+.+. ++ ..+++++++++  +.|+|++++|...+.+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            58999999999999999998754   34 45789998887766543 55 46789999997  59999999986655554


Q ss_pred             hhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          143 VACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +.       ..++.|+.|+.-  -.....+.+++.+..++.++.+.
T Consensus        83 ~~-------~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~  121 (334)
T 3ohs_X           83 VM-------LCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLM  121 (334)
T ss_dssp             HH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HH-------HHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            44       345677766644  24466777788888877765443

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.57  E-value=2e-07  Score=86.64  Aligned_cols=197  Identities=14%  Similarity=0.075  Sum_probs=115.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc------cchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK------SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      -+.+++|+|||+|+.|.+.|..|+..|.+|++--|..      .+.+...+.|..+. +..|+++.+|+|++.+|+ ..-
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD-~~q  111 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPD-KQH  111 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCG-GGH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCCh-hhH
Confidence            4677999999999999999999999999999877622      22344556677764 799999999999999984 455


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEEec---C--C
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFLAA---G--D  209 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~---g--~  209 (358)
                      ..++   +++.+.|++|+.+. .+.|.-+....+   ....++.++ -+|--.+...     ...|.+.++.-   .  +
T Consensus       112 ~~vy---~~I~p~lk~G~~L~-faHGFnI~~~~i---~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~s  184 (491)
T 3ulk_A          112 SDVV---RTVQPLMKDGAALG-YSHGFNIVEVGE---QIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPK  184 (491)
T ss_dssp             HHHH---HHHGGGSCTTCEEE-ESSCHHHHTTCC---CCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTT
T ss_pred             HHHH---HHHHhhCCCCCEEE-ecCccccccccc---ccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCc
Confidence            5566   56899999999887 345432211000   001122222 1221111100     11232333322   1  2


Q ss_pred             HhHHHHHHHHHHHhcCC--eEEeCCcChHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303          210 KSLYNTVAPLLDIMGKS--RFYLGDVGNGAAMKLV-VNM-IMGSMMATFSEGLLHSEKVGLDPNVLV  272 (358)
Q Consensus       210 ~~~~~~v~~ll~~~g~~--~~~~g~~g~~~~~k~~-~n~-~~~~~~~~~~Ea~~l~~~~G~~~~~~~  272 (358)
                      -.+.+.+.....++|..  .+.-.......-..+. .+. +.+.+..++.-.+..+.+.|.+|+.++
T Consensus       185 G~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~  251 (491)
T 3ulk_A          185 GEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAE  251 (491)
T ss_dssp             SCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            35666777777788753  2333332222223333 222 333334444445666688899986544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.55  E-value=3.2e-07  Score=73.38  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivi~~vp~~~~~~~  142 (358)
                      .+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.|....    .+.+.+    +.++|+|++++|.+.....
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            58999999999999999999999999999999998888877665421    222222    4579999999987665554


Q ss_pred             hhcccccccccCCCCCEEEE
Q 018303          143 VACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~  162 (358)
                      ++   . ....+.++..+|-
T Consensus        88 ~~---~-~a~~~~~~~~iia  103 (140)
T 3fwz_A           88 IV---A-SARAKNPDIEIIA  103 (140)
T ss_dssp             HH---H-HHHHHCSSSEEEE
T ss_pred             HH---H-HHHHHCCCCeEEE
Confidence            44   2 2334455556663

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.55  E-value=1.1e-07  Score=87.00  Aligned_cols=92  Identities=18%  Similarity=0.242  Sum_probs=64.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh---C------CCcc-CCCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKY-QPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~---~------g~~~-~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |+|+|||+|.||..++..|...|+  +|.++|+++++.+....   .      .... ..+ .+.+++||+||+++|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            589999999999999999999998  99999999876655331   0      1111 234 456789999999998543


Q ss_pred             h---------------HhhhhcccccccccCCCCCEEEEccCCC
Q 018303          139 S---------------AMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       139 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .               .+.++   +.+.+. .+++++|+.++..
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~~~~~ii~~tNp~  119 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIA---RNVSKY-APDSIVIVVTNPV  119 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECSSSH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---HHHHhh-CCCeEEEEeCCcH
Confidence            1               23444   444443 4788888876543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.54  E-value=7.7e-07  Score=77.80  Aligned_cols=84  Identities=17%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      ++||+|+|+|+||+.+++.+.+.+.++. ++|+++..     ..++..++++++++ ++|+||-++ .+..+...+   +
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft-~p~a~~~~~---~   72 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFS-NPNLLFPLL---D   72 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECS-CHHHHHHHH---T
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeC-ChHHHHHHH---H
Confidence            4799999999999999999998766655 47887652     35677788899988 999998666 356666665   3


Q ss_pred             cccccCCCCCEEEEccCCCh
Q 018303          149 GAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~  168 (358)
                           ++.|..+|..+++..
T Consensus        73 -----l~~g~~vVigTTG~s   87 (243)
T 3qy9_A           73 -----EDFHLPLVVATTGEK   87 (243)
T ss_dssp             -----SCCCCCEEECCCSSH
T ss_pred             -----HhcCCceEeCCCCCC
Confidence                 667777776666643

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.54  E-value=1.4e-07  Score=86.51  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=74.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCcEEEEcCCccchhhHHh-CCCcc-CCCHHHHh-hcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGT-PMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAKY-QPSPDEVA-ASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~-~~a~~l~~~-g~~V~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~-~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|||||+|.||. .+++.+... +.+|.++|+++++.+.+.+ .|+.. +.+..+++ .++|+|++++|.....+.+. 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~-   81 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   81 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH-
Confidence            5899999999998 599988764 6777799999988776654 35543 34445555 67999999998544433333 


Q ss_pred             ccccccccCCCCCEE-EEc-cCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGY-VDV-STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~v-i~~-s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                            ..++.|+.+ ++- ......+.+++.+..++.++.+.
T Consensus        82 ------~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~  118 (323)
T 1xea_A           82 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLY  118 (323)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             ------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEE
Confidence                  234567644 432 33456667778888877765443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.54  E-value=2.6e-07  Score=84.94  Aligned_cols=93  Identities=12%  Similarity=0.161  Sum_probs=67.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h----C----CCccCCCHHHHhhcCCEEEEee--
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S----L----GAKYQPSPDEVAASCDVTFAML--  134 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~----~----g~~~~~~~~~~~~~aDivi~~v--  134 (358)
                      .|||+|||+|.||..+|..|+..|+ +|.+||+++++++...    +    .    .+..+.++++.+++||+||+++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4799999999999999999999898 9999999987665421    1    1    1333578888899999999999  


Q ss_pred             CChhh------------------HhhhhcccccccccCCCCCEEEEccCC
Q 018303          135 ADPES------------------AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       135 p~~~~------------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      |..+.                  .+.++   +++.+. .|++++++.++.
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~vi~~tNP  134 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIG---QNIKKY-CPKTFIIVVTNP  134 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHH---HHHHHH-CTTCEEEECCSS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCcEEEEEcCc
Confidence            53221                  22333   344333 488888877553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.53  E-value=3.7e-07  Score=72.96  Aligned_cols=70  Identities=17%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPE  138 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~  138 (358)
                      .+++|.|+|+|.+|+.+++.|.+.|++|.++|+++++.+.+.+.+...    ..+.+.+    ++++|+|++++|...
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            346899999999999999999999999999999998888777665432    1233222    357999999998443

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.53  E-value=3.8e-07  Score=84.98  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhC-C----CccCCCHHHHhh--cCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISL-G----AKYQPSPDEVAA--SCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~-g----~~~~~~~~~~~~--~aDivi~~vp~~~~  139 (358)
                      ..++|||||+|.||..+++.+... ++++ .++|+++++.+.+.+. +    ...+.+++++++  ++|+|++++|...+
T Consensus         5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A            5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH   84 (362)
T ss_dssp             -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH
Confidence            346999999999999999999875 5665 5799998877665543 4    355679999987  59999999985544


Q ss_pred             HhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeEe
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      .+.+.       ..++.|+.|+.--  .....+.+++.+..++.++.+.
T Consensus        85 ~~~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           85 VEWAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             HHHHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             HHHHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            44333       3467788666542  3455667788888888877655

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.52  E-value=1.8e-07  Score=74.72  Aligned_cols=70  Identities=13%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHH---H-hhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDE---V-AASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~---~-~~~aDivi~~vp~~  137 (358)
                      +.+++|.|+|+|.+|+.+++.|...|++|.++++++++.+.+.+.+...    ..+.+.   + +.++|+|++++|.+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            3456899999999999999999999999999999887665554444321    123322   2 56799999999754

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.49  E-value=2.3e-07  Score=74.24  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           70 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      .++|+|||+    |++|..+++.|.+.|++  +|++++.+ .+.+  .|...+.++.|+.+..|++++++| +.....++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp-~~~~~~v~   87 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL   87 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeC-HHHHHHHH
Confidence            358999999    89999999999999998  45555553 2222  367777889998888999999997 57888888


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                         ++..+. ....+++..+. .   ++++.+.+++.|+.++.
T Consensus        88 ---~~~~~~-gi~~i~~~~g~-~---~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           88 ---PEVLAL-RPGLVWLQSGI-R---HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             ---HHHHHH-CCSCEEECTTC-C---CHHHHHHHHHTTCCEEE
T ss_pred             ---HHHHHc-CCCEEEEcCCc-C---HHHHHHHHHHcCCEEEc
Confidence               555543 23455554332 2   46788888888888886

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.49  E-value=3e-07  Score=87.77  Aligned_cols=112  Identities=12%  Similarity=0.140  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCChhHH-HHHHHHHHC-CCcE-EEEcCCccchhhHHh-CCCc-----cCCCHHHHhh--cCCEEEEeeCC
Q 018303           68 ELPGRIGFLGMGIMGT-PMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LGAK-----YQPSPDEVAA--SCDVTFAMLAD  136 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~-~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~-~g~~-----~~~~~~~~~~--~aDivi~~vp~  136 (358)
                      ...++|||||+|.||+ .+++.+... ++++ .++|+++++.+.+.+ .|+.     .+.+.+++++  +.|+|++|+|.
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~  160 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  160 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence            4456999999999997 899988765 5665 579999887766654 3553     4778999987  69999999986


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEe
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ..+.+.+.       ..++.|+.|+..  ......+.+++.+..++.++.+.
T Consensus       161 ~~h~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          161 SLHAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             hhHHHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence            55544444       345677765543  23455667788888877765543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.48  E-value=3e-07  Score=86.91  Aligned_cols=72  Identities=28%  Similarity=0.322  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH-hCCCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI-SLGAKY--QPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~-~~g~~~--~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      +..+++|+|||+|.||..+++.+..+|+ +|++++|++++.+.+. +.|...  ..++.+++.++|+||.|+|.+.
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence            3567899999999999999999999998 8999999987764443 335432  2467788889999999998554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.47  E-value=5.4e-07  Score=82.09  Aligned_cols=90  Identities=13%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHH---hC-------C--CccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLI---SL-------G--AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~---~~-------g--~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|+|||+|.||..+|..|+..  |++|.++|+++++.+...   ..       .  +..+.+.++ +++||+||+++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            5899999999999999999884  799999999987665432   11       1  233456766 8999999999975


Q ss_pred             hhh---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PES---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..               .+.+.   +.+.+. .++.++++.++
T Consensus        80 p~~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~~~~~viv~tN  119 (310)
T 1guz_A           80 PRKPGMTREDLLMKNAGIVKEVT---DNIMKH-SKNPIIIVVSN  119 (310)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CSSCEEEECCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEEcC
Confidence            421               12333   333333 57788887754

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.47  E-value=4.1e-07  Score=84.30  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=79.6

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      +++||||||+|.||+. ++..+... +.+|. ++|+++++++.+.+. |+ ..++|.++++++  .|+|++|+|...+.+
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~  101 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIE  101 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHH
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHH
Confidence            4469999999999986 56777764 56765 689999888776653 65 467899999864  799999999666655


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       102 ~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l  140 (350)
T 4had_A          102 WSI-------KAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV  140 (350)
T ss_dssp             HHH-------HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred             HHH-------HHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence            554       345677777654  2234566778888877766543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.46  E-value=7.4e-07  Score=83.65  Aligned_cols=111  Identities=15%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHC--------CCcE-EEEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKA--------GCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~--------g~~V-~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~v  134 (358)
                      ++.-||||||+|.||+..++.+...        +.+| .++|+++++++.+.+. ++ ..++|.++++++  .|+|++|+
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            4445899999999999888876542        3454 4789999988877653 55 467899999964  79999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      |...+.+.++       ..++.|+.|+.-  -.....+.+++.++.++.++.+
T Consensus       103 P~~~H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l  148 (393)
T 4fb5_A          103 PNQFHAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAERSGKVA  148 (393)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred             ChHHHHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence            9766666555       445678877755  2345667778888888776544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.46  E-value=4.3e-07  Score=85.94  Aligned_cols=139  Identities=22%  Similarity=0.317  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhC--C----------------------CccCCCHHH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISL--G----------------------AKYQPSPDE  122 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~--g----------------------~~~~~~~~~  122 (358)
                      +..||||||+|.||+.+++.+... +++| .++|+++++.+.+.+.  |                      ...++|.++
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee  101 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDL  101 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHH
Confidence            346899999999999999988754 5554 4689998877655321  2                      345789999


Q ss_pred             Hhh--cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCC
Q 018303          123 VAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVSGSKKPAED  199 (358)
Q Consensus       123 ~~~--~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  199 (358)
                      +++  +.|+|++++|.+..-..+.      ...++.|+.|+...-. .....+.|.+..++.++.+              
T Consensus       102 LL~d~dIDaVviaTp~p~~H~e~a------~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl--------------  161 (446)
T 3upl_A          102 ILSNPLIDVIIDATGIPEVGAETG------IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIY--------------  161 (446)
T ss_dssp             HHTCTTCCEEEECSCCHHHHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCE--------------
T ss_pred             HhcCCCCCEEEEcCCChHHHHHHH------HHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCee--------------
Confidence            997  4899999998653222222      3567789988853211 1123356666666655433              


Q ss_pred             CceEEEecCC-HhHHHHHHHHHHHhcCCeEEeC
Q 018303          200 GQLIFLAAGD-KSLYNTVAPLLDIMGKSRFYLG  231 (358)
Q Consensus       200 ~~~~~~~~g~-~~~~~~v~~ll~~~g~~~~~~g  231 (358)
                          .+..++ +.....+..+.+.+|+.++.+|
T Consensus       162 ----~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          162 ----SLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ----EECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ----eecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                223343 4555667777888888888775

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.45  E-value=6e-07  Score=83.71  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      .++|||||+|.||+. .+..+... +++|. ++|+++++... ...+...+.+++++++  +.|+|++|+|.....+.+.
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~   85 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR   85 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            468999999999997 77777765 67765 78998865442 1225677889999998  6899999998665555444


Q ss_pred             cccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          145 CGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                             ..++.|+.|+..-  .....+.+++.+..++.++.+
T Consensus        86 -------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~  121 (364)
T 3e82_A           86 -------LALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLL  121 (364)
T ss_dssp             -------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             -------HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence                   3466788777654  446667778888888777554

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.44  E-value=7.4e-07  Score=82.69  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhh
Q 018303           69 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  143 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~  143 (358)
                      ..++|||||+|.||+. .+..+... +++|. ++|+++++.+. ...+...+.|+++++++  .|+|++|+|...+.+.+
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   84 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA   84 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            3468999999999997 78888765 67765 78998876541 11256678899999976  89999999976665555


Q ss_pred             hcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        85 ~-------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~  121 (352)
T 3kux_A           85 Q-------SALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL  121 (352)
T ss_dssp             H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCE
T ss_pred             H-------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            4       3456777666432  345667778888887776544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.44  E-value=6.3e-07  Score=82.77  Aligned_cols=112  Identities=16%  Similarity=0.128  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHHC--CCcE-EEEcCCccchhhHHhC-CC-ccCCCHHHHhh--cCCEEEEeeCChh
Q 018303           67 DELPGRIGFLGMG-IMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLADPE  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~--g~~V-~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~vp~~~  138 (358)
                      .....+|||||+| .+|...+..+...  +.++ .++|+++++.+.+.+. ++ ..++|.+++++  +.|+|++|+|...
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            3445689999999 8999999999876  4565 5799998887766543 54 66789999997  5899999998655


Q ss_pred             hHhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ..+.+.       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        95 H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  136 (340)
T 1zh8_A           95 NLPFIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKTV  136 (340)
T ss_dssp             HHHHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             HHHHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            544443       3456777666542  335666778888887766543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.43  E-value=1e-06  Score=70.79  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|||+    |++|..+++.|.+.|++|+..++  .. +.+  .|...+.+++|+....|++++++| +.....++ 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp--~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp-~~~~~~vv-   94 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP--KY-EEV--LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV-   94 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT--TC-SEE--TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECC--CC-CeE--CCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHH-
Confidence            468999999    79999999999999998555544  33 222  367777889999888999999997 57777777 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                        ++..+.- ...+++. +. .  ..+++.+.+++.|+.++.
T Consensus        95 --~~~~~~g-i~~i~~~-~g-~--~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           95 --EQAIKKG-AKVVWFQ-YN-T--YNREASKKADEAGLIIVA  129 (144)
T ss_dssp             --HHHHHHT-CSEEEEC-TT-C--CCHHHHHHHHHTTCEEEE
T ss_pred             --HHHHHcC-CCEEEEC-CC-c--hHHHHHHHHHHcCCEEEc
Confidence              5554432 2344443 22 2  256788888888988875

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.42  E-value=3.1e-07  Score=85.03  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=77.9

Q ss_pred             CeEEEEcCChhHHH-HHH-HHHH-CCCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhhc--CCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLGMGIMGTP-MAQ-NLLK-AGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG~G~iG~~-~a~-~l~~-~g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~  143 (358)
                      ++|||||+|.||+. .+. .+.. .+++|. ++|+++++.+...+. ++..++|+++++++  .|+|++|+|...+.+.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   82 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence            58999999999996 455 3333 367766 799988766444333 66778899999986  89999999866555544


Q ss_pred             hcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        83 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (345)
T 3f4l_A           83 K-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV  119 (345)
T ss_dssp             H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             H-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            4       4466788887653  445667778888888777544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.42  E-value=9.4e-07  Score=83.93  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCh---hHHHHHHHHHHCC-CcEE--EEcCCccchhhHHh-CCC---ccCCCHHHHhhc-------CCEE
Q 018303           68 ELPGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVT  130 (358)
Q Consensus        68 ~~~~~IgIIG~G~---iG~~~a~~l~~~g-~~V~--~~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDiv  130 (358)
                      ++.+||||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ..++++++++++       .|+|
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V  114 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV  114 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence            3456999999999   9999999887765 5664  67999888776654 366   578899999976       9999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ++++|...+.+.+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus       115 ~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  164 (417)
T 3v5n_A          115 AIVTPNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADESDALF  164 (417)
T ss_dssp             EECSCTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCE
T ss_pred             EECCCcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEE
Confidence            99999766655444       456778777654  2345667778888887776543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.42  E-value=1.9e-07  Score=87.16  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC----Cc--cCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG----AK--YQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g----~~--~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      +.+.|||+|||+|.+|+.+++.|++ .++|.++|++.++.+.+.+..    +.  -..++.++++++|+||.++|.. .-
T Consensus        13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~   90 (365)
T 3abi_A           13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF-LG   90 (365)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG-GH
T ss_pred             cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc-cc
Confidence            4566899999999999999999975 589999999988776654431    11  1224556788999999999843 33


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ..++   +   ..++.|..++|++-.. ....++.+..++.|+.++
T Consensus        91 ~~v~---~---~~~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i  129 (365)
T 3abi_A           91 FKSI---K---AAIKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIV  129 (365)
T ss_dssp             HHHH---H---HHHHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEE
T ss_pred             chHH---H---HHHhcCcceEeeeccc-hhhhhhhhhhccCCceee
Confidence            3343   2   2345667777765332 233345555555555443

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.42  E-value=6.3e-07  Score=84.59  Aligned_cols=110  Identities=9%  Similarity=0.029  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCh---hHHHHHHHHHHCC-CcEE--EEcCCccchhhHHh-CCC---ccCCCHHHHhhc-------CCEEE
Q 018303           69 LPGRIGFLGMGI---MGTPMAQNLLKAG-CDVT--VWNRTKSKCDPLIS-LGA---KYQPSPDEVAAS-------CDVTF  131 (358)
Q Consensus        69 ~~~~IgIIG~G~---iG~~~a~~l~~~g-~~V~--~~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~-------aDivi  131 (358)
                      +..+|||||+|.   ||...+..+...+ +++.  ++|+++++.+.+.+ .|+   ..++|+++++++       .|+|+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence            446899999999   9999999887765 6765  57999888777654 466   578899999975       99999


Q ss_pred             EeeCChhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          132 AMLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      +|+|...+.+.+.       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        91 i~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  139 (398)
T 3dty_A           91 IATPNGTHYSITK-------AALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIV  139 (398)
T ss_dssp             EESCGGGHHHHHH-------HHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCE
T ss_pred             ECCCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeE
Confidence            9998665555444       345677777653  2345667778888888776544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.41  E-value=9.1e-07  Score=81.14  Aligned_cols=90  Identities=17%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h-------C-CCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S-------L-GAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~-------~-g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ++|+|||+|.||..+|..++..|+ +|.+||+++++++...    +       . .+..+.+. +.+++||+||++++.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999999998 9999999987665321    1       0 23344677 7789999999998322


Q ss_pred             h---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          138 E---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .               -.+.++   +++.+. .|++++++.++
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  132 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVA---ENVGKY-CPNAFVICITN  132 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHH---HHHHHH-CTTCEEEECCS
T ss_pred             CCCCCchhhHHhhhHHHHHHHH---HHHHHH-CCCeEEEEecC
Confidence            1               123333   444333 47888887765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.41  E-value=1.1e-06  Score=78.74  Aligned_cols=113  Identities=18%  Similarity=0.127  Sum_probs=79.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC------C--CccC--CCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL------G--AKYQ--PSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~------g--~~~~--~~~~~~~~~aDivi~~vp  135 (358)
                      ++.++++.|+|+|.+|++++..|...|. +|.+++|++++.+.+.+.      +  +...  +++.+.++++|+||.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4677899999999999999999999998 699999998887665431      1  1122  377788889999999998


Q ss_pred             ChhhHhh--hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          136 DPESAMD--VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       136 ~~~~~~~--~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ....-..  .+  +   ...++++.+++|+.-.+..+  .+.+..++.|...+
T Consensus       204 ~Gm~~~~~~pi--~---~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~  249 (283)
T 3jyo_A          204 MGMPAHPGTAF--D---VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETL  249 (283)
T ss_dssp             TTSTTSCSCSS--C---GGGCCTTCEEEECCCSSSSC--HHHHHHHHHTCCEE
T ss_pred             CCCCCCCCCCC--C---HHHhCCCCEEEEecCCCCCC--HHHHHHHHCcCeEe
Confidence            5432111  12  1   24577899999997654333  35455555565444

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=98.39  E-value=3.3e-05  Score=67.23  Aligned_cols=158  Identities=11%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          113 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       113 g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      |+..++|-.|+++++|++|+-+|....+..++   +++++.+++|++|.|+++.++...-...+.+.+..+.+.+.+.-+
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa  204 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC  204 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence            67788899999999999999999999999999   999999999999999999998866555555655545444432111


Q ss_pred             CCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Q 018303          193 SKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNV  270 (358)
Q Consensus       193 ~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~  270 (358)
                       .|.. .|....-.+ .++++++++.++.++.++..+.+...-...... ....+.+..++++.+..... +-.|.+.+.
T Consensus       205 -VPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~D-Mgs~vTAv~~AGiL~Y~~~vtkIlgAP~~m  281 (358)
T 2b0j_A          205 -VPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCD-MCSAVTATVYAGLLAYRDAVTKILGAPADF  281 (358)
T ss_dssp             -CTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             -CCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhh-hHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence             1111 344433222 389999999999999999988765411111111 12333444445555555444 446777665


Q ss_pred             HHHHHh
Q 018303          271 LVEVVS  276 (358)
Q Consensus       271 ~~~~~~  276 (358)
                      +...+.
T Consensus       282 ie~q~~  287 (358)
T 2b0j_A          282 AQMMAD  287 (358)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544333

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.39  E-value=3.4e-07  Score=85.25  Aligned_cols=97  Identities=22%  Similarity=0.281  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeCChhh-
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLADPES-  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp~~~~-  139 (358)
                      ..+++|.|+|+|.+|+.+++.++..|.+|+++||++++.+.+.+.+...       ..++.+.+..+|+||.+++.+.. 
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            4557999999999999999999999999999999988877665433211       12345667789999999965431 


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ...++  .++.++.|+++.+++|++..
T Consensus       245 ~~~li--~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILV--PASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCB--CHHHHTTSCTTCEEEETTCT
T ss_pred             CCeec--CHHHHhhCCCCCEEEEEecC
Confidence            22222  24456778999999999753

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.38  E-value=5.2e-07  Score=82.56  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+||+|||+|+||+.+++.+.+. ++++ .++|+++++  .+. .++..++++++++.++|+|++|+|.....+.+.   
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~---   76 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA---   76 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH---
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH---
Confidence            35899999999999999999876 5664 578988654  222 355556778888888999999998554544443   


Q ss_pred             ccccccCCCCCEEEEccCCC--hhHH-HHHHHHHHhcC
Q 018303          148 HGAASGMGPGKGYVDVSTVD--GDTS-KLINGHIKATG  182 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~--~~~~-~~l~~~l~~~~  182 (358)
                          ..++.|..++......  ..+. +.+.+..++++
T Consensus        77 ----~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           77 ----PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             ----HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence                3456788777655433  2223 45666655444

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.38  E-value=5.1e-07  Score=82.00  Aligned_cols=91  Identities=13%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh---CC------CccC-CCHHHHhhcCCEEEEeeCChh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQ-PSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~---~g------~~~~-~~~~~~~~~aDivi~~vp~~~  138 (358)
                      |||+|||+|.||..+|..++..|+  +|.++|+++++.+....   ..      .... .+ .+.+++||+||++++.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            589999999999999999999998  99999998765443211   11      1111 24 356889999999995432


Q ss_pred             h---------------HhhhhcccccccccCCCCCEEEEccCC
Q 018303          139 S---------------AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       139 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .               .+.++   +++.+. .|++++++.++.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tNP  118 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSNP  118 (304)
T ss_dssp             --------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSSS
T ss_pred             CCCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecCc
Confidence            1               13333   444443 588888887554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.37  E-value=1.2e-06  Score=83.79  Aligned_cols=111  Identities=14%  Similarity=0.092  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHh----CC---CccCC----CHHHHhh--cCCEEEE
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS----LG---AKYQP----SPDEVAA--SCDVTFA  132 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~----~g---~~~~~----~~~~~~~--~aDivi~  132 (358)
                      +..++|||||+|.||...+..+... +++| .++|+++++.+.+.+    .|   ...+.    +.+++++  +.|+|++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i   97 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV   97 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence            3446999999999999999999874 6665 479999888776543    24   45566    8999997  5899999


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      |+|...+.+.++       ..++.|+.|+.-  ......+.+++.+..++.+..+
T Consensus        98 ~tp~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~  145 (444)
T 2ixa_A           98 SSPWEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPL  145 (444)
T ss_dssp             CCCGGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCE
T ss_pred             cCCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeE
Confidence            998665555444       356678866643  2345667778888887776544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.37  E-value=1.4e-06  Score=81.19  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCChhHH-HHHHHHHHCCCcEE-EEcCCccchhhHHhC-C-CccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           68 ELPGRIGFLGMGIMGT-PMAQNLLKAGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~-~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      +...+|||||+|.+|. .++..+...+.++. ++|+++++.+.+.+. + ...+.++++++++  .|+|++++|...+.+
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~  103 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE  103 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence            3457999999999995 57777777888854 799999887776553 4 5667899999975  899999998655544


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~  183 (358)
                      .+.       ..++.|+.|+.-  -.....+.+++.+..++.++
T Consensus       104 ~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  140 (361)
T 3u3x_A          104 LAI-------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGR  140 (361)
T ss_dssp             HHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCC
T ss_pred             HHH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            443       345677766644  23455667778887776654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.36  E-value=5.2e-07  Score=82.51  Aligned_cols=96  Identities=15%  Similarity=0.276  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchh--hHH-hCCC------c--cCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLI-SLGA------K--YQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~-~~g~------~--~~~~~~~~~~~aDivi~~v  134 (358)
                      ...|+|+|||+|.||..++..|+..|+  +|.++|+++++.+  ... ..+.      .  ...+. +.++++|+|++++
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v   83 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITA   83 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECC
Confidence            334799999999999999999999998  9999999876554  121 1121      1  11243 5678999999999


Q ss_pred             CChh---------------hHhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          135 ADPE---------------SAMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       135 p~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      +.+.               ..+.++   +.+.+ ..+++++++.+++..
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~---~~i~~-~~~~~~vi~~~Np~~  128 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIM---PNLVK-VAPNAIYMLITNPVD  128 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHH---HHHHH-HCTTSEEEECCSSHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH---HHHHH-hCCCceEEEecCchH
Confidence            5321               111344   44444 368888988766543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.36  E-value=2.4e-07  Score=82.94  Aligned_cols=111  Identities=18%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C---CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G---AKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|+|+|.+|++++..|...|. +|.+++|++++.+.+.+. +   .....+++++..++|+||.++|.....+
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            4577899999999999999999999996 899999998887766542 1   1112245565578999999998764332


Q ss_pred             h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          142 D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       142 ~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      . .+  +   ...++++.+++|+.-.+. .+. +.+..++.|+.
T Consensus       203 ~~~l--~---~~~l~~~~~V~DlvY~P~-~T~-ll~~A~~~G~~  239 (281)
T 3o8q_A          203 LPAI--D---PVIFSSRSVCYDMMYGKG-YTV-FNQWARQHGCA  239 (281)
T ss_dssp             -CSC--C---GGGEEEEEEEEESCCCSS-CCH-HHHHHHHTTCS
T ss_pred             CCCC--C---HHHhCcCCEEEEecCCCc-cCH-HHHHHHHCCCC
Confidence            1 12  1   134678899999987643 332 54566666654

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.35  E-value=2.9e-07  Score=85.79  Aligned_cols=113  Identities=12%  Similarity=0.223  Sum_probs=81.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ..||+|||+| +|+..++.+.+.  ++++. ++|+++++.+.+.+ .|+..++|.++++++.|++++++|.......-. 
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~-   84 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGT-   84 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHH-
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHH-
Confidence            4689999999 899988888764  56655 68999988777655 488888999999999999999998654321111 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                        +-....++.|+.|+.---....+.+++.+..+++|+.+.
T Consensus        85 --~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~  123 (372)
T 4gmf_A           85 --QLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYW  123 (372)
T ss_dssp             --HHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             --HHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEE
Confidence              111234667887776544556677788888888777654

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.35  E-value=7.5e-07  Score=84.47  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=80.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC---------CCcE-EEEcCCccchhhHHhC-CC-ccCCCHHHHhh--cCCEEEEeeC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA---------GCDV-TVWNRTKSKCDPLISL-GA-KYQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~---------g~~V-~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~--~aDivi~~vp  135 (358)
                      ..||||||+|.||+..+..+++.         +.+| .++|+++++++.+.+. ++ ..++|.+++++  +.|+|++|+|
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp  105 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP  105 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence            36899999999999999988764         2354 4689999888776553 55 46789999996  4899999999


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ...+.+.++       ..++.|+.|+.-  -.....+.+++.+..++.+..+
T Consensus       106 ~~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  150 (412)
T 4gqa_A          106 NHLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKT  150 (412)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCE
T ss_pred             cHHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCee
Confidence            766655554       456678777654  2345667778888877766544

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.35  E-value=1.3e-06  Score=82.12  Aligned_cols=109  Identities=13%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLGMG-IMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG~G-~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~  144 (358)
                      ++|||||+| .||..++..+... +.++. ++|+++++.+.+.+ .|+..+.|+++++++  .|+|++++|...+.+.+.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~   82 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV   82 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHH
Confidence            589999999 9999999999875 56654 78999887766554 378788899999975  999999998655544443


Q ss_pred             cccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeEe
Q 018303          145 CGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                             ..++.|+.|+.--  .....+.+++.+..++.++.+.
T Consensus        83 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~  119 (387)
T 3moi_A           83 -------QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV  119 (387)
T ss_dssp             -------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred             -------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEE
Confidence                   3456677666432  3456677788888877766543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.34  E-value=5.9e-07  Score=85.86  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHHC--CCcE-EEEcCCccchhhHHhC-CCc---cCCCHHHHhh--cCCEEEEeeC
Q 018303           69 LPGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GAK---YQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~----G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~--~aDivi~~vp  135 (358)
                      ..++|||||+    |.||..+++.+...  +++| .++|+++++.+.+.+. |+.   .+.+++++++  +.|+|++|+|
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp   98 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ   98 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence            4469999999    99999999999886  6775 5799998877666543 554   6789999997  5899999998


Q ss_pred             ChhhHhhhhcccccccccCCCC------CEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          136 DPESAMDVACGKHGAASGMGPG------KGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~------~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ...+.+.+.       ..++.|      +.|+.-  ......+.+++.+..++.++.+
T Consensus        99 ~~~H~~~~~-------~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~  149 (438)
T 3btv_A           99 VASHYEVVM-------PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQT  149 (438)
T ss_dssp             HHHHHHHHH-------HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEE
T ss_pred             cHHHHHHHH-------HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeE
Confidence            655554444       234455      544433  3445667778888887766543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.34  E-value=1.1e-06  Score=84.80  Aligned_cols=111  Identities=15%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcC----ChhHHHHHHHHHHC--CCcE-EEEcCCccchhhHHhC-CCc---cCCCHHHHhh--cCCEEEEee
Q 018303           68 ELPGRIGFLGM----GIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLISL-GAK---YQPSPDEVAA--SCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~----G~iG~~~a~~l~~~--g~~V-~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~--~aDivi~~v  134 (358)
                      +..++|||||+    |.||..++..+...  +++| .++|+++++.+.+.+. |+.   .+.+.+++++  +.|+|++|+
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            44579999999    99999999999885  6675 4799998877766543 553   6789999996  589999999


Q ss_pred             CChhhHhhhhcccccccccCCCC------C-EEEEc-cCCChhHHHHHHHHHHhcC-CeE
Q 018303          135 ADPESAMDVACGKHGAASGMGPG------K-GYVDV-STVDGDTSKLINGHIKATG-ASF  185 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~------~-~vi~~-s~~~~~~~~~l~~~l~~~~-~~~  185 (358)
                      |.....+.+.       ..++.|      + +++.- ......+.+++.+..++.+ +.+
T Consensus       117 p~~~H~~~~~-------~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          117 KVPEHYEVVK-------NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT  169 (479)
T ss_dssp             CHHHHHHHHH-------HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             CcHHHHHHHH-------HHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            8655544444       234556      5 44443 3345667778888887766 543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.33  E-value=1.7e-06  Score=79.06  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h----C----CCccCCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S----L----GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~----~----g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+||+|||+|.||..++..++..|+ +|.++|+++++++...    +    .    .+..+.+. +.+++||+||++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g   81 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG   81 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            3689999999999999999999998 9999999987654321    1    0    13334677 77899999999983

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.33  E-value=4.4e-07  Score=85.62  Aligned_cols=98  Identities=16%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCE-EEEeeCChhhHhhhhc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV-TFAMLADPESAMDVAC  145 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDi-vi~~vp~~~~~~~~~~  145 (358)
                      +.+++|+|+|+|+||+.+|+.+.+ +|++|++++++....  ....|+    +++++++.+|. .++ +|. +++++ + 
T Consensus       210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~--~~~~gv----dl~~L~~~~d~~~~l-~~l-~~t~~-i-  279 (419)
T 1gtm_A          210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI--YNPDGL----NADEVLKWKNEHGSV-KDF-PGATN-I-  279 (419)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE--EEEEEE----CHHHHHHHHHHHSSS-TTC-TTSEE-E-
T ss_pred             cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc--cCccCC----CHHHHHHHHHhcCEe-ecC-ccCee-e-
Confidence            789999999999999999999999 999999885432111  111121    56666654432 122 454 35566 4 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI  178 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  178 (358)
                       +.+.+..|++ .++||++|+..+++++ .++|
T Consensus       280 -~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL  309 (419)
T 1gtm_A          280 -TNEELLELEV-DVLAPAAIEEVITKKN-ADNI  309 (419)
T ss_dssp             -CHHHHHHSCC-SEEEECSCSCCBCTTG-GGGC
T ss_pred             -CHHHHHhCCC-CEEEECCCcccCCHHH-HHHh
Confidence             3445566877 6999999999999877 3555

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.33  E-value=3e-06  Score=75.63  Aligned_cols=111  Identities=24%  Similarity=0.236  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC---ccCCCHHHHh-hcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA---KYQPSPDEVA-ASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~-~~aDivi~~vp~~~~~~  141 (358)
                      .+.++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. +.   ....+.+++. .++|+||.++|.+.. .
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-G  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-T
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-C
Confidence            4567899999999999999999999999999999998877665432 11   1112334443 489999999986543 1


Q ss_pred             hhhcccccc-cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          142 DVACGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       142 ~~~~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      .+.    .+ ...++++.+++|+...+.. . .+.+..++.|..
T Consensus       195 ~~~----~i~~~~l~~~~~v~D~~y~p~~-t-~~~~~a~~~G~~  232 (271)
T 1nyt_A          195 DIP----AIPSSLIHPGIYCYDMFYQKGK-T-PFLAWCEQRGSK  232 (271)
T ss_dssp             CCC----CCCGGGCCTTCEEEESCCCSSC-C-HHHHHHHHTTCC
T ss_pred             CCC----CCCHHHcCCCCEEEEeccCCcC-C-HHHHHHHHcCCC
Confidence            111    11 1235789999999876433 2 244555565544

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.32  E-value=3.3e-06  Score=77.12  Aligned_cols=108  Identities=9%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhC--CCccCCCHHHHh-----------hcCCEEEEee
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVA-----------ASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~--g~~~~~~~~~~~-----------~~aDivi~~v  134 (358)
                      +++|||||+ |.||...+..+...+.++. ++|+++++. .+.+.  +...+++.++++           .+.|+|++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t   81 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS   81 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence            469999999 7899999999998887654 689987763 23222  466778999987           4689999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      |...+.+.+.       ..++.|+.|+.--  .....+.+++.+..++.+..+
T Consensus        82 P~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  127 (318)
T 3oa2_A           82 PNYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRL  127 (318)
T ss_dssp             CGGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             CcHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence            9665555544       3456777776542  345667778888887776544

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.32  E-value=3.4e-06  Score=76.81  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=79.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhC--CCccCCCHHHHh----------hcCCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVA----------ASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~--g~~~~~~~~~~~----------~~aDivi~~vp  135 (358)
                      ++||||||+ |.||...+..+...+.++. ++|+++++.. +.+.  +...+.+.++++          .+.|+|++|+|
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGL-VDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGG-GGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-HHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            369999999 7899999999998887754 6899887642 3222  466778999988          56999999998


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      ...+.+.+.       ..++.|+.|+.--  .....+.+++.+..++.+..+
T Consensus        82 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~  126 (312)
T 3o9z_A           82 NHLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEARTGRRV  126 (312)
T ss_dssp             GGGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred             chhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE
Confidence            665555444       4466788777542  345667778888887776544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.31  E-value=1.5e-06  Score=80.87  Aligned_cols=107  Identities=16%  Similarity=0.120  Sum_probs=77.3

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhhc--CCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~  143 (358)
                      .+||||||+|.||+. .+..+... +++|. ++|+++++..  .+. +...+.|+++++++  .|+|++|+|...+.+.+
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA   82 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence            468999999999997 77777765 67765 6899877632  222 56678899999987  89999999866555544


Q ss_pred             hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.-  -.....+.+++.+..++.++.+
T Consensus        83 ~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~  119 (362)
T 3fhl_A           83 G-------MALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLML  119 (362)
T ss_dssp             H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             H-------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence            4       345677766653  2345667778888887776544

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.29  E-value=2.9e-06  Score=76.32  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~  145 (358)
                      ..||+|+|+ |+||+.+++.+.+.|+++. +..++.+. +.  ..|+..+.+++|+.+  .+|++++++| +.....++ 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP-~~~~~~~~-   81 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVP-APFCKDSI-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCC-GGGHHHHH-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecC-HHHHHHHH-
Confidence            358999999 9999999999998898843 33334322 11  246777889999988  8999999998 55666666 


Q ss_pred             ccccccccCCCCC-EEEEccCCC-hhHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGK-GYVDVSTVD-GDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~-~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  187 (358)
                        .+..+   .|. .+|..+.+. ..+.+++.+..++.++.++.
T Consensus        82 --~ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG  120 (288)
T 2nu8_A           82 --LEAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIG  120 (288)
T ss_dssp             --HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             --HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence              33333   343 334455543 44566888888888887764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.28  E-value=2.2e-06  Score=76.37  Aligned_cols=111  Identities=16%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CC--ccCCCHHHHh-hcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GA--KYQPSPDEVA-ASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~-~~aDivi~~vp~~~~~~  141 (358)
                      ++.++++.|+|+|.+|++++..|...|. +|.+++|++++.+.+.+. +.  ....+.+++- .++|+||.++|....-.
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~  196 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD  196 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC
Confidence            4567899999999999999999999996 899999999887776543 11  1112334443 68999999998654321


Q ss_pred             h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303          142 D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       142 ~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      . .+  +   ...++++.+++|+.-.+.. + .+.+..++.|+.
T Consensus       197 ~~~i--~---~~~l~~~~~V~DlvY~P~~-T-~ll~~A~~~G~~  233 (272)
T 3pwz_A          197 LPPL--P---ADVLGEAALAYELAYGKGL-T-PFLRLAREQGQA  233 (272)
T ss_dssp             CCCC--C---GGGGTTCSEEEESSCSCCS-C-HHHHHHHHHSCC
T ss_pred             CCCC--C---HHHhCcCCEEEEeecCCCC-C-HHHHHHHHCCCC
Confidence            1 12  1   2346789999999766433 3 255555666654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.28  E-value=1.7e-06  Score=80.37  Aligned_cols=107  Identities=12%  Similarity=0.187  Sum_probs=77.3

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~  143 (358)
                      .++|||||+|.||.. .+..+... +++|. ++|+++++..  ... +...+.+++++++  +.|+|++|+|...+.+.+
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~   82 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT   82 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence            468999999999997 67777665 67764 6899876522  222 5677889999998  689999999976665555


Q ss_pred             hcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          144 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        83 ~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~  119 (358)
T 3gdo_A           83 M-------ACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLL  119 (358)
T ss_dssp             H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             H-------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeE
Confidence            4       3466777776542  345667778888887776544

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.28  E-value=1.9e-06  Score=79.86  Aligned_cols=106  Identities=9%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCcEE-EEcCCccchhhHHh----CCCccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLIS----LGAKYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~-~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      ++|||||+|.||+ ..+..+... +++|. ++|++  +.+.+.+    .++..+.++++++++  .|+|++|+|...+.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD   80 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence            5899999999999 567767654 67765 78887  3344432    366778899999986  899999998665554


Q ss_pred             hhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          142 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        81 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~  119 (349)
T 3i23_A           81 LAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV  119 (349)
T ss_dssp             HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             HHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeE
Confidence            444       3456777666432  334667778888887776544

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.27  E-value=1.1e-06  Score=78.18  Aligned_cols=113  Identities=13%  Similarity=0.111  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHh---hh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAM---DV  143 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~---~~  143 (358)
                      .++++.|||+|.+|++++..|...|. +|.+++|+.++.+.+.+. +.....+..  +.++|+||.++|......   ..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            35789999999999999999999997 799999998887776543 332222222  468999999998654221   11


Q ss_pred             hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                      .   .--...++++.+++|+.-.+.. + .+.+..++.|..+++.
T Consensus       196 ~---~~~~~~l~~~~~v~DlvY~P~~-T-~ll~~A~~~G~~~i~G  235 (271)
T 1npy_A          196 L---AFPKAFIDNASVAFDVVAMPVE-T-PFIRYAQARGKQTISG  235 (271)
T ss_dssp             C---SSCHHHHHHCSEEEECCCSSSS-C-HHHHHHHHTTCEEECH
T ss_pred             C---CCCHHHcCCCCEEEEeecCCCC-C-HHHHHHHHCCCEEECC
Confidence            1   0001235578899999874433 3 5666667777666543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.26  E-value=9.3e-07  Score=79.98  Aligned_cols=92  Identities=11%  Similarity=0.059  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCcc-----C--CCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKY-----Q--PSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~-----~--~~~~~~~~~aDivi~~v  134 (358)
                      ++.++++.|||.|.| |+.+|+.|...|.+|++++|+..+.    +.+.......     +  .++.+.++++|+||.++
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt  253 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  253 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence            678899999999986 9999999999999999999984322    2121110111     2  46788999999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +.+.   -++  ..   +.+++|+++||++..
T Consensus       254 g~p~---~vI--~~---e~vk~GavVIDVgi~  277 (320)
T 1edz_A          254 PSEN---YKF--PT---EYIKEGAVCINFACT  277 (320)
T ss_dssp             CCTT---CCB--CT---TTSCTTEEEEECSSS
T ss_pred             CCCc---cee--CH---HHcCCCeEEEEcCCC
Confidence            7532   224  22   346899999999764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.25  E-value=6.3e-07  Score=80.08  Aligned_cols=113  Identities=19%  Similarity=0.159  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC---ccCCCHHHHhh-cCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA---KYQPSPDEVAA-SCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~-~aDivi~~vp~~~~~~  141 (358)
                      +..++++.|+|+|.+|++++..|...|.+|++++|++++.+.+.+. +.   ....+++++.+ ++|+||.++|..... 
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-  194 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-  194 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-
Confidence            4567899999999999999999999999999999998877666532 11   11123444433 899999999865432 


Q ss_pred             hh--hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe-Ee
Q 018303          142 DV--ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FL  186 (358)
Q Consensus       142 ~~--~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~-~~  186 (358)
                      .+  +  +.   ..++++.+++|++..+..+.. +.+..++.|.. ++
T Consensus       195 ~~~~i--~~---~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v  236 (272)
T 1p77_A          195 GTASV--DA---EILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVS  236 (272)
T ss_dssp             ---CC--CH---HHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEE
T ss_pred             CCCCC--CH---HHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEee
Confidence            11  1  11   234678899999886544233 44555666654 44

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.25  E-value=3.3e-06  Score=77.55  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCChhHH-HHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc---CCEEEEeeCChhhH
Q 018303           67 DELPGRIGFLGMGIMGT-PMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~-~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~vp~~~~~  140 (358)
                      .++.+||||||+|.||. ..+..+... +.+|. ++|+++++      .|+..+.++++++++   .|+|++++|.....
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~   95 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRY   95 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHH
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHH
Confidence            34457999999999999 788888875 56654 68888654      356778899999875   89999999854444


Q ss_pred             hhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeEe
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +.+.       ..++.|+.|+.--  .....+.+++.+..++.++.+.
T Consensus        96 ~~~~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~  136 (330)
T 4ew6_A           96 EAAY-------KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLF  136 (330)
T ss_dssp             HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHH-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence            4333       4466788777442  3355667778888877776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.23  E-value=2e-06  Score=74.14  Aligned_cols=87  Identities=15%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCcc----CCCH---HHH-hhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY----QPSP---DEV-AASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~----~~~~---~~~-~~~aDivi~~vp~~~~~~  141 (358)
                      |+|.|+|+|.+|+.+++.|...|++|.++|+++++.+.+.+ .+...    ..+.   .++ ++++|+|++++|.+.. .
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-n   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV-N   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH-H
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH-H
Confidence            58999999999999999999999999999999988777653 33321    1222   232 5679999999975543 3


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      ..+   ......+.+...+|
T Consensus        80 ~~~---~~~a~~~~~~~~ii   96 (218)
T 3l4b_C           80 LFI---AQLVMKDFGVKRVV   96 (218)
T ss_dssp             HHH---HHHHHHTSCCCEEE
T ss_pred             HHH---HHHHHHHcCCCeEE
Confidence            333   23333334455555

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.20  E-value=4.9e-06  Score=73.27  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +.++++.|||.|. +|+.+|..|...|.+|++++++              +.++.+.++++|+||.+++.+.    ++  
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~----~I--  207 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPG----FL--  207 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTT----CB--
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCc----cc--
Confidence            7889999999986 8999999999999999999864              2478899999999999998532    44  


Q ss_pred             cccccccCCCCCEEEEccCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ..   .++++|+++||++..
T Consensus       208 ~~---~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          208 NR---EMVTPGSVVIDVGIN  224 (276)
T ss_dssp             CG---GGCCTTCEEEECCCE
T ss_pred             cH---hhccCCcEEEEeccC
Confidence            22   346999999999764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.20  E-value=6.8e-06  Score=74.71  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh---C-------C--CccCCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS---L-------G--AKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~---~-------g--~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      +||+|||+|.||..++..++..|+ +|.++|+++++.+....   .       .  +..+.+. +.+++||+||++++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999999997 89999998866543211   1       1  2233566 6789999999998543


Q ss_pred             hh---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          138 ES---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..               .+.++   +.+.+. .|++++++.++
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~vi~~tN  120 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACI---SQAAPL-SPNAVIIMVNN  120 (309)
T ss_dssp             -------CHHHHHHHHHHHHHH---HHHGGG-CTTCEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH---HHHHhh-CCCeEEEEcCC
Confidence            21               12232   333333 48888888755

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=98.19  E-value=1.6e-06  Score=77.43  Aligned_cols=112  Identities=14%  Similarity=0.030  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhH--hh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESA--MD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~--~~  142 (358)
                      +..++++.|+|+|.+|++++..|...|. +|.+++|++++.+.+.+. ......++.+ + ++|+||.++|....-  ..
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4567899999999999999999999998 899999999887766542 1111123333 4 899999999864221  11


Q ss_pred             -hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          143 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       143 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       .+  +   ...++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       197 ~pi--~---~~~l~~~~~v~DlvY~P~~T--~ll~~A~~~G~~~~~  235 (282)
T 3fbt_A          197 SPV--D---KEVVAKFSSAVDLIYNPVET--LFLKYARESGVKAVN  235 (282)
T ss_dssp             CSS--C---HHHHTTCSEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             CCC--C---HHHcCCCCEEEEEeeCCCCC--HHHHHHHHCcCeEeC
Confidence             12  1   23467889999996544332  355566666655543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.18  E-value=4.9e-06  Score=74.25  Aligned_cols=77  Identities=27%  Similarity=0.384  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHH--HHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD--EVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++.++++.|||.|. +|+.+|..|...|.+|+++++...              ++.  +.+++||+||.++|.+    ++
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p----~~  223 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQP----GY  223 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCT----TC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCC----CC
Confidence            67899999999988 799999999999999999987432              445  8899999999999853    24


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +  ..   .++++|+++||++..
T Consensus       224 I--~~---~~vk~GavVIDvgi~  241 (300)
T 4a26_A          224 V--KG---EWIKEGAAVVDVGTT  241 (300)
T ss_dssp             B--CG---GGSCTTCEEEECCCE
T ss_pred             C--cH---HhcCCCcEEEEEecc
Confidence            4  22   347999999999653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.18  E-value=9.3e-06  Score=73.69  Aligned_cols=115  Identities=13%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC---ccchhhHHhC-----CC----ccCCC---HHHHhhcCCEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLISL-----GA----KYQPS---PDEVAASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~---~~~~~~~~~~-----g~----~~~~~---~~~~~~~aDiv  130 (358)
                      ++.++++.|+|+|.+|++++..|+..|. +|.+++|+   .++.+.+.+.     +.    ...++   +.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            4678899999999999999999999998 89999999   6655554321     11    11223   34567799999


Q ss_pred             EEeeCChhhHh--h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          131 FAMLADPESAM--D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       131 i~~vp~~~~~~--~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |.++|....-.  . .+   . ....++++.+++|+.-.+..+  .+.+..++.|...++
T Consensus       231 INaTp~Gm~~~~~~~p~---~-~~~~l~~~~~V~DlvY~P~~T--~ll~~A~~~G~~~~~  284 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLL---P-SADMLRPELIVSDVVYKPTKT--RLLEIAEEQGCQTLN  284 (315)
T ss_dssp             EECSSTTSTTSTTCCSC---C-CGGGCCTTCEEEESCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             EECccCCCCCCCCCCCC---C-cHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEeC
Confidence            99998543211  1 11   0 124577899999997654433  355555666655443

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.17  E-value=6.5e-06  Score=71.84  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      -..|||+++|+|+||+.+++.  . ++++. +|+   ++...+   |+..++|++++++++|+|+.|.+ ...+++.+  
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~-~~av~e~~--   77 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECAS-PEAVKEYS--   77 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSC-HHHHHHHH--
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCC-HHHHHHHH--
Confidence            345899999999999999998  4 77764 566   343333   66677889999889999999994 66666544  


Q ss_pred             cccccccCCCCCEEEEccCCCh---hHHHHHHHHHHhcCCeE
Q 018303          147 KHGAASGMGPGKGYVDVSTVDG---DTSKLINGHIKATGASF  185 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~---~~~~~l~~~l~~~~~~~  185 (358)
                          ...|+.|.-++.+|.+..   ...+.|.++.++++..+
T Consensus        78 ----~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l  115 (253)
T 1j5p_A           78 ----LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV  115 (253)
T ss_dssp             ----HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred             ----HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence                345788999998887643   33467777777776654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.17  E-value=4.2e-06  Score=75.33  Aligned_cols=90  Identities=13%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHh----C--C--CccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----L--G--AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~----~--g--~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|||+|.||..+|..|+..|+  +|.+||+++++++.    +.+    .  .  +....+ .+.+++||+||++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            689999999999999999998887  89999999876541    111    1  1  222345 7889999999999864


Q ss_pred             hhh---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PES---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..               .+.+.   +.+.+ ..|++++++.++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~---~~i~~-~~p~a~iivvsN  119 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIA---KKIVE-NAPESKILVVTN  119 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHH---HHHHT-TSTTCEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHH---HHHHh-hCCCeEEEEeCC
Confidence            321               12222   33333 478899998874

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.16  E-value=2.9e-06  Score=79.50  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=74.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC--------Cc-EEEEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG--------CD-VTVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g--------~~-V~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~vp~  136 (358)
                      ..||||||+|.||+..+..+....        .+ |.++|+++++.+.+.+. |+ ..++|.++++++  .|+|++|+|.
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~   85 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG   85 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            358999999999999988886532        24 44789999887776553 54 467899999864  7999999997


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHH---HHhcCC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGH---IKATGA  183 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~---l~~~~~  183 (358)
                      ..+.+.++       ..++.|+.|+.--  .....+.++|.+.   .+..++
T Consensus        86 ~~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~  130 (390)
T 4h3v_A           86 DSHAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGI  130 (390)
T ss_dssp             GGHHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCC
Confidence            66666555       4566788777542  2344556666444   444444

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.16  E-value=7.8e-06  Score=72.40  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|. +|+.+|..|...|.+|++++++.              .++.+.++++|+||.+++.+    +++ 
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p----~~I-  218 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKP----NFI-  218 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCT----TCB-
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCCC----CCC-
Confidence            67889999999988 69999999999999999997642              36788899999999999743    234 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   +++++|+++||++..
T Consensus       219 -~~---~~vk~GavVIDvgi~  235 (285)
T 3l07_A          219 -TA---DMVKEGAVVIDVGIN  235 (285)
T ss_dssp             -CG---GGSCTTCEEEECCCE
T ss_pred             -CH---HHcCCCcEEEEeccc
Confidence             22   357999999999653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.15  E-value=3.1e-06  Score=81.22  Aligned_cols=113  Identities=21%  Similarity=0.284  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhC-CCcc----CC---CHHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-GAKY----QP---SPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~-g~~~----~~---~~~~~~~~aDivi~~vp~~  137 (358)
                      .+.+++|.|+|+|.+|+.++..|.+. |++|.+++|++++.+.+.+. ++..    ..   ++.++++++|+||.++|..
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~   99 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT   99 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence            45567999999999999999999987 78999999998877666542 3221    11   3456678999999999854


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .. ..+.   .   ..+.++..+++.+-..+. ...+.+..++.|+.+++
T Consensus       100 ~~-~~v~---~---a~l~~g~~vvd~~~~~p~-~~~Ll~~Ak~aGv~~i~  141 (467)
T 2axq_A          100 FH-PNVV---K---SAIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMN  141 (467)
T ss_dssp             GH-HHHH---H---HHHHHTCEEEECSCCCHH-HHHHHHHHHHHTCEEEC
T ss_pred             hh-HHHH---H---HHHhcCCEEEEeecCCHH-HHHHHHHHHHcCCEEEe
Confidence            22 2233   2   234567788877553443 34566666666665554

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.14  E-value=5.7e-06  Score=77.53  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=79.0

Q ss_pred             CCeEEEEc-CChhHHH-HH----HHHHHCC-CcE----------EEEcCCccchhhHHh-CCC-ccCCCHHHHhhc--CC
Q 018303           70 PGRIGFLG-MGIMGTP-MA----QNLLKAG-CDV----------TVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CD  128 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~-~a----~~l~~~g-~~V----------~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aD  128 (358)
                      .++||||| +|.||.. .+    ..+...+ ..+          .++|+++++.+.+.+ .++ ..++|+++++++  .|
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD   85 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDT   85 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCC
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCC
Confidence            46899999 9999998 77    7776544 222          489999988877654 466 367899999976  89


Q ss_pred             EEEEeeCChhhHhhhhcccccccccCCCCCEEEEcc--CCChhHHHHHHHHHHhcCCeE
Q 018303          129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s--~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      +|++++|...+.+.+.       ..++.|+.|+.--  .....+.+++.+..++.++.+
T Consensus        86 ~V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~  137 (383)
T 3oqb_A           86 MFFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKH  137 (383)
T ss_dssp             EEEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             EEEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            9999998655544443       4567788777432  345667778888887776543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.14  E-value=6.6e-06  Score=75.07  Aligned_cols=92  Identities=15%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH-h--CC------CccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI-S--LG------AKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~-~--~g------~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      .+||+|||+|.+|..++..++..|.  +|.++|+++++.+... +  ..      .....+..+.+++||+||++++.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999999887  8999999887654321 1  11      1112233567899999999997543


Q ss_pred             h---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          139 S---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .               ++.+.   +.+.+. .|++++++.++
T Consensus        87 k~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  124 (318)
T 1y6j_A           87 KPGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVVSN  124 (318)
T ss_dssp             ----CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEECSS
T ss_pred             CCCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEecC
Confidence            1               23333   344333 68899998644

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.13  E-value=9.7e-06  Score=72.29  Aligned_cols=79  Identities=22%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|+ +|+.+|+.|...|.+|++++++              +.++.+.++++|+||.+++.+.    ++ 
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~----~I-  222 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPE----MV-  222 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTT----CB-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCcc----cC-
Confidence            67889999999996 6999999999999999999754              2478889999999999998543    34 


Q ss_pred             ccccccccCCCCCEEEEccCCCh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                       ..   +++++|+++||++....
T Consensus       223 -~~---~~vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          223 -KG---EWIKPGAIVIDCGINYV  241 (301)
T ss_dssp             -CG---GGSCTTCEEEECCCBC-
T ss_pred             -CH---HHcCCCcEEEEccCCCc
Confidence             23   34689999999987543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.12  E-value=7.5e-06  Score=72.52  Aligned_cols=77  Identities=23%  Similarity=0.320  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|. +|+.+|+.|...|.+|++++++.              .++.+.++++|+||.+++.+.    ++ 
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI-  216 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FI-  216 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CB-
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cC-
Confidence            67889999999997 59999999999999999997543              477888999999999997443    34 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   +++++|+++||++..
T Consensus       217 -~~---~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          217 -PG---DWIKEGAIVIDVGIN  233 (288)
T ss_dssp             -CT---TTSCTTCEEEECCCE
T ss_pred             -CH---HHcCCCcEEEEccCC
Confidence             22   346899999999764

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.12  E-value=3.9e-06  Score=80.27  Aligned_cols=110  Identities=22%  Similarity=0.219  Sum_probs=72.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-C-Cc----cCC---CHHHHhhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G-AK----YQP---SPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g-~~----~~~---~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      +++|.|+|+|.||+.+++.|...|++|.+++|++++.+.+.+. + ..    -..   ++.++++++|+||.++|.....
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~   82 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   82 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence            4689999999999999999999999999999998766554432 1 11    112   3446778899999999853322


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       .+.   .   ..+.+|..+++.+...+. ...+.+..++.|+.++.
T Consensus        83 -~i~---~---a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~  121 (450)
T 1ff9_A           83 -TVI---K---SAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMN  121 (450)
T ss_dssp             -HHH---H---HHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEEC
T ss_pred             -HHH---H---HHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEe
Confidence             122   1   123456677766543333 34566666666665543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.12  E-value=8.5e-06  Score=74.32  Aligned_cols=93  Identities=8%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----Hh------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS------LGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~------~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ..+||+|||+|.+|..++..+...|.  +|.++|+++++.+..    .+      .......+..+.+++||+||++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            45799999999999999999988774  899999987654421    11      1122222446778999999999964


Q ss_pred             hhh---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PES---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..               .+.+.   +++.+ ..|++++++.++
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~---~~i~~-~~p~a~viv~tN  124 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIV---GEVMA-SKFDGIFLVATN  124 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHH-TTCCSEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHH---HHHHH-hCCCcEEEEecC
Confidence            421               12222   33333 368999998653

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.12  E-value=8.5e-06  Score=72.16  Aligned_cols=77  Identities=22%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|. +|+.+|..|...|..|++++++.              .++.+.++++|+||.+++.+    +++ 
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p----~~I-  217 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCV----NLL-  217 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCT----TCB-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCC----CcC-
Confidence            67889999999988 69999999999999999998642              36788899999999999843    234 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       ..   +++++|+++||++..
T Consensus       218 -~~---~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          218 -RS---DMVKEGVIVVDVGIN  234 (285)
T ss_dssp             -CG---GGSCTTEEEEECCCE
T ss_pred             -CH---HHcCCCeEEEEeccC
Confidence             22   357999999999653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.12  E-value=1e-05  Score=73.84  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhh----HHh------CC--CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~~~------~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +..+||+|||+|.||..++..++..|+ +|.++|+++++++.    +.+      ..  +..+.+. +.+++||+||++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            445799999999999999999999998 99999999876532    111      12  2223455 7889999999997


Q ss_pred             CChh---h------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          135 ADPE---S------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       135 p~~~---~------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +.+.   .            .+.+.   +.+.+ ..|++++++.++
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~---~~i~~-~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVG---AGIKK-YAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHH---HHHHH-HCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHH---HHHHH-HCCCeEEEecCC
Confidence            5321   1            12222   33333 358889998875

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.12  E-value=7.8e-06  Score=72.16  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++.++++.|||.|.| |+.+|+.|...  |.+|++++++.              .++.+.++++|+||.+++.+.    +
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~  216 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAH----L  216 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTT----C
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCc----c
Confidence            678899999999986 99999999998  89999997643              478888999999999997543    3


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +  ..   +++++|+++||++..
T Consensus       217 I--~~---~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          217 L--TA---DMVRPGAAVIDVGVS  234 (281)
T ss_dssp             B--CG---GGSCTTCEEEECCEE
T ss_pred             c--CH---HHcCCCcEEEEccCC
Confidence            4  22   346899999999754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.11  E-value=1.4e-05  Score=72.40  Aligned_cols=116  Identities=15%  Similarity=0.100  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC---ccchhhHHhC-----CC--c--cCCCH---HHHhhcCCEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT---KSKCDPLISL-----GA--K--YQPSP---DEVAASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~---~~~~~~~~~~-----g~--~--~~~~~---~~~~~~aDiv  130 (358)
                      ++.++++.|+|+|.+|++++..|...|. +|.+++|+   .++.+.+.+.     +.  .  ...++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            4677899999999999999999999998 79999999   6555554431     21  1  12343   4567889999


Q ss_pred             EEeeCChhhHhhhhccccc--ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          131 FAMLADPESAMDVACGKHG--AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~--~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |.++|....-..-.   .-  -...++++.++.|+.-.+..+  .+.+..++.|...++
T Consensus       225 INaTp~Gm~~~~~~---~~~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~  278 (312)
T 3t4e_A          225 TNGTKVGMKPLENE---SLIGDVSLLRPELLVTECVYNPHMT--KLLQQAQQAGCKTID  278 (312)
T ss_dssp             EECSSTTSTTSTTC---CSCCCGGGSCTTCEEEECCCSSSSC--HHHHHHHHTTCEEEC
T ss_pred             EECCcCCCCCCCCC---cccCCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeEEC
Confidence            99998653211100   00  123567889999996654433  355555666655543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.09  E-value=6.3e-06  Score=75.17  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC------CCccCCCHHHHhhcCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL------GAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~------g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ..+||+|||+|.||..++..++..|.  +|.++|+++++.+..    .+.      ......+..+.+++||+||++.|.
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~   84 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence            34699999999999999999987664  899999987644322    111      111112345678999999999864


Q ss_pred             h
Q 018303          137 P  137 (358)
Q Consensus       137 ~  137 (358)
                      +
T Consensus        85 ~   85 (316)
T 1ldn_A           85 N   85 (316)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.09  E-value=1.3e-05  Score=70.88  Aligned_cols=78  Identities=26%  Similarity=0.327  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||.|. +|+.+|..|...|.+|+++.+..              .++.+.++++|+||.+++.+    +++ 
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p----~~I-  218 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKP----GLV-  218 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCT----TCB-
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCC----CCC-
Confidence            67899999999987 79999999999999999997632              36788899999999999853    234 


Q ss_pred             ccccccccCCCCCEEEEccCCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       ..   +++++|+++||++...
T Consensus       219 -~~---~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          219 -KG---EWIKEGAIVIDVGINR  236 (286)
T ss_dssp             -CG---GGSCTTCEEEECCSCS
T ss_pred             -CH---HHcCCCeEEEEecccc
Confidence             22   3469999999997643

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.08  E-value=5.7e-06  Score=74.88  Aligned_cols=91  Identities=10%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchh---hHHhC---CCccCCCHHHHhhcCCEEEEeeCC-----
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCD---PLISL---GAKYQPSPDEVAASCDVTFAMLAD-----  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~---~~~~~---g~~~~~~~~~~~~~aDivi~~vp~-----  136 (358)
                      .+||+|||+|.||..++..+...|+  +|.++|++++...   .+.+.   .+..+.+. +.+++||+||++...     
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            4689999999999999999998888  8999999874211   11111   23444577 668999999999722     


Q ss_pred             --------hhh-HhhhhcccccccccCCCCCEEEEccC
Q 018303          137 --------PES-AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 --------~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                              +.. .+.++   +++.+. .|++++++.++
T Consensus        93 tR~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALV---PALGHY-SQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHHH-TTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHH---HHHHHh-CCCeEEEEcCC
Confidence                    111 22333   444433 48899888877

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.08  E-value=3.8e-06  Score=79.83  Aligned_cols=66  Identities=11%  Similarity=0.177  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCChh--HHHHHHHHHH----CCCcEEEEcCCccchhhHHhC---------CCccCCCHHHHhhcCCEEEEe
Q 018303           69 LPGRIGFLGMGIM--GTPMAQNLLK----AGCDVTVWNRTKSKCDPLISL---------GAKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        69 ~~~~IgIIG~G~i--G~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~aDivi~~  133 (358)
                      ..+||+|||+|++  |..++..+..    .| +|.+||+++++++.....         .+..++|+++++++||+||++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            3469999999997  6889988875    46 999999998765543221         245677999999999999999


Q ss_pred             eC
Q 018303          134 LA  135 (358)
Q Consensus       134 vp  135 (358)
                      ++
T Consensus        83 ir   84 (450)
T 3fef_A           83 IL   84 (450)
T ss_dssp             CC
T ss_pred             cc
Confidence            96

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=98.08  E-value=1.2e-05  Score=72.22  Aligned_cols=108  Identities=21%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|+|+ |+||+.+++.+.+.|+++. .+++... .+.  ..|+..+.+++|+.+  .+|++++++| +.....++ 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-g~~--i~G~~vy~sl~el~~~~~~Dv~Ii~vp-~~~~~~~~-   81 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-GME--VLGVPVYDTVKEAVAHHEVDASIIFVP-APAAADAA-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TCE--ETTEEEESSHHHHHHHSCCSEEEECCC-HHHHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-Cce--ECCEEeeCCHHHHhhcCCCCEEEEecC-HHHHHHHH-
Confidence            358999999 9999999999998899843 4454321 011  246778889999998  8999999997 66777777 


Q ss_pred             ccccccccCCCCC-EEEEccCCCh-hHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGK-GYVDVSTVDG-DTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~-~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~  187 (358)
                        ++..+   .|. .+|..+.+.+ .+.+++.+..++.++.++.
T Consensus        82 --~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vig  120 (288)
T 1oi7_A           82 --LEAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (288)
T ss_dssp             --HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             --HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence              44443   232 2454555544 4567888888888887664

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.07  E-value=1.5e-05  Score=72.61  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhh----HHh------CCCcc--CCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS------LGAKY--QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~----~~~------~g~~~--~~~~~~~~~~aDivi~~vp  135 (358)
                      ..+||+|||+|.||..+|..++..|+ +|.++|+++++.+.    +.+      .....  ..+ .+.+++||+||++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            35799999999999999999998887 99999999876542    211      11222  334 478899999999975


Q ss_pred             Chh---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          136 DPE---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       136 ~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.               -.+.+.   +.+.+ ..|++++++.++
T Consensus        83 ~p~k~G~~R~dl~~~N~~i~~~i~---~~i~~-~~p~a~vivvtN  123 (321)
T 3p7m_A           83 VPRKPGMSRDDLLGINIKVMQTVG---EGIKH-NCPNAFVICITN  123 (321)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHH---HHHHH-HCTTCEEEECCS
T ss_pred             cCCCCCCCHHHHHHHhHHHHHHHH---HHHHH-HCCCcEEEEecC
Confidence            331               112222   33333 348888888854

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.07  E-value=1.1e-05  Score=65.25  Aligned_cols=87  Identities=16%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc-cchhhHH---hCCCcc----CCC---HHHH-hhcCCEEEEeeCChh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLI---SLGAKY----QPS---PDEV-AASCDVTFAMLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~~~~~~---~~g~~~----~~~---~~~~-~~~aDivi~~vp~~~  138 (358)
                      ++|.|+|+|.+|+.+++.|.+.|++|.++++++ ++.+.+.   ..++..    ..+   +.++ ++++|+|+++++.+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChH
Confidence            579999999999999999999999999999974 4333332   223221    112   2333 678999999997553


Q ss_pred             hHhhhhcccccccccCCCCCEEE
Q 018303          139 SAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      . ...+   ......+.+...++
T Consensus        84 ~-n~~~---~~~a~~~~~~~~ii  102 (153)
T 1id1_A           84 D-NAFV---VLSAKDMSSDVKTV  102 (153)
T ss_dssp             H-HHHH---HHHHHHHTSSSCEE
T ss_pred             H-HHHH---HHHHHHHCCCCEEE
Confidence            3 3333   23334443444444

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.06  E-value=1e-05  Score=73.83  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHhC------CCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL------GAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~------g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      .+||+|||+|.||..+|..|+..|+  +|.++|+++++++.    +.+.      ++....+..+.+++||+||++.+.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            4699999999999999999998886  89999998876554    3321      2222233346789999999998543


Q ss_pred             h---h------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          138 E---S------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~---~------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .   .            .+.+.   +.+.+ ..|++++++.++
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~---~~I~~-~~p~a~vlvvtN  123 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIV---SEVMA-SGFDGIFLVATN  123 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHH---HHHHH-TTCCSEEEECSS
T ss_pred             CCCCccHHHHHHHHHHHHHHHH---HHHHH-hcCCeEEEEcCC
Confidence            2   1            11222   23322 457889998875

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.06  E-value=1.1e-05  Score=71.75  Aligned_cols=93  Identities=19%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHC-CCcEEE-EcCCccch-----hhHH--hCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTV-WNRTKSKC-----DPLI--SLGAKYQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~-----~~~~--~~g~~~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      ++++||+|+| +|+||+.+++.+... ++++.+ ++++++..     ..+.  ..++..+++++++++++|+||-+++ +
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p   83 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-P   83 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-H
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-H
Confidence            3457999999 899999999998764 677665 78864321     1111  1156677899999999999999995 6


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ..+...+   ..   .++.|..+|..+++.
T Consensus        84 ~a~~~~~---~~---al~~G~~vVigTTG~  107 (272)
T 4f3y_A           84 EGTLVHL---DA---ALRHDVKLVIGTTGF  107 (272)
T ss_dssp             HHHHHHH---HH---HHHHTCEEEECCCCC
T ss_pred             HHHHHHH---HH---HHHcCCCEEEECCCC
Confidence            6665555   32   345676677655554

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.02  E-value=1.5e-05  Score=72.29  Aligned_cols=94  Identities=13%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHh------CCCccC-CCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS------LGAKYQ-PSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~------~g~~~~-~~~~~~~~~aDivi~~vp~~  137 (358)
                      |||+|||+|.||..+|..++..|.  +|.++|+++++.+.    +.+      ...... ++..+.+++||+||++.+.+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            689999999999999999988776  89999998876542    111      122222 24567789999999998644


Q ss_pred             hh---H--------hhhhcc-cccccccCCCCCEEEEccC
Q 018303          138 ES---A--------MDVACG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~~---~--------~~~~~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..   +        -.++.. -+.+. ...|++++++.++
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~-~~~p~a~vivvtN  119 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFV-EGSPDSTIIVVAN  119 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHH-TTCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEecCC
Confidence            21   1        111100 02333 3468899998875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.02  E-value=5.4e-06  Score=74.56  Aligned_cols=113  Identities=16%  Similarity=0.064  Sum_probs=74.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-C----------CccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G----------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g----------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ++.++++.|+|+|.||++++..|.+.| +|.+++|+.++.+.+.+. +          +. ..+..+.+.++|+||.++|
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d-~~~~~~~~~~~DilVn~ag  202 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-FSGLDVDLDGVDIIINATP  202 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE-EECTTCCCTTCCEEEECSC
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEE-EeeHHHhhCCCCEEEECCC
Confidence            456789999999999999999999999 999999998766555321 0          01 1122455678999999998


Q ss_pred             ChhhHh--hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          136 DPESAM--DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ......  ...+  . -...++++.+++|++..+ ... .+.+..++.|..++
T Consensus       203 ~~~~~~~~~~~~--~-~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~~~~  250 (287)
T 1nvt_A          203 IGMYPNIDVEPI--V-KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNAKTI  250 (287)
T ss_dssp             TTCTTCCSSCCS--S-CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTCEEE
T ss_pred             CCCCCCCCCCCC--C-CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCCEEe
Confidence            543211  0100  0 124578899999998743 322 34455555555443

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.02  E-value=7.6e-06  Score=75.32  Aligned_cols=106  Identities=9%  Similarity=-0.044  Sum_probs=74.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCCc-cchhhHHh----CC--CccCCCHHHHhhc--CCEEEEeeCChhhH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK-SKCDPLIS----LG--AKYQPSPDEVAAS--CDVTFAMLADPESA  140 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~~-~~~~~~~~----~g--~~~~~~~~~~~~~--aDivi~~vp~~~~~  140 (358)
                      +||||||+|.+|...++.+ ..+.+|. ++|+++ ++.+.+.+    .+  ...++|.++++++  .|+|++++|...+.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~   81 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG   81 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence            5899999999999888777 5567765 689887 45554433    24  4678899999875  89999999865554


Q ss_pred             hhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCe
Q 018303          141 MDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      +.+.       ..++.|+.|+.-  -.....+.+++.+..++.+..
T Consensus        82 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  120 (337)
T 3ip3_A           82 KILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE  120 (337)
T ss_dssp             HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred             HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence            4443       345677776643  233456777888888776654

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.01  E-value=1.5e-05  Score=71.89  Aligned_cols=107  Identities=14%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH----CCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK----AGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~----~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~  141 (358)
                      ..++|||||+|.||+..++.+..    .+.++. ++|++...    ...++. ..+.+++++  +.|+|++++|...+.+
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~   80 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHED   80 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHH
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHH
Confidence            34699999999999999998864    355554 67875421    122444 479999987  6899999998665555


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeEec
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .+.       ..++.|+.|+.-  ......+.+++.+..++.++.+..
T Consensus        81 ~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~  121 (294)
T 1lc0_A           81 YIR-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHE  121 (294)
T ss_dssp             HHH-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            444       345678755543  234566778888888877765543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.01  E-value=1.9e-05  Score=72.27  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-----GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~-----g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ....+||+|||+|.+|..++..+...+.  +|.++|+++++++...    +.     .+....+..+.+++||+||++.+
T Consensus         6 ~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag   85 (326)
T 2zqz_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAG   85 (326)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence            3445799999999999999999987775  7999999876654321    11     12222345677899999999986


Q ss_pred             Ch
Q 018303          136 DP  137 (358)
Q Consensus       136 ~~  137 (358)
                      .+
T Consensus        86 ~~   87 (326)
T 2zqz_A           86 AP   87 (326)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.00  E-value=1.5e-05  Score=76.38  Aligned_cols=67  Identities=19%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             CCeEEEEcCChh--HHHHHHHHHHC----CCcEEEEcCCccchhhHHh--------C----CCccCCCHHHHhhcCCEEE
Q 018303           70 PGRIGFLGMGIM--GTPMAQNLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        70 ~~~IgIIG~G~i--G~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi  131 (358)
                      .+||+|||+|.|  |.+++..++..    |.+|.+||+++++++....        .    .+..++|+.+++++||+||
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            469999999997  57667777643    8899999999876554221        1    1334568888899999999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      +++|.
T Consensus        83 iaagv   87 (480)
T 1obb_A           83 NTAMV   87 (480)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99973

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.99  E-value=1.6e-05  Score=75.46  Aligned_cols=117  Identities=22%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH----------CCCcE-EEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLK----------AGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~----------~g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~v  134 (358)
                      ++..+|||||+|.||+.+++.+..          .+.+| .++|+++++.+.+. .+...+++++++++  +.|+|++++
T Consensus         8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~t   86 (444)
T 3mtj_A            8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELI   86 (444)
T ss_dssp             CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECC
T ss_pred             hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcC
Confidence            344689999999999999988763          24444 46888877655442 34567789999987  479999999


Q ss_pred             CC-hhhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeE-ecCCCCC
Q 018303          135 AD-PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASF-LEAPVSG  192 (358)
Q Consensus       135 p~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~-~~~~~~~  192 (358)
                      |. ..+.+.+       ...++.|+.|+...-. .....++|.+..+++++.+ +.+.+.+
T Consensus        87 p~~~~h~~~~-------~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~  140 (444)
T 3mtj_A           87 GGLEPARELV-------MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAG  140 (444)
T ss_dssp             CSSTTHHHHH-------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSST
T ss_pred             CCchHHHHHH-------HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeC
Confidence            85 3333322       2457789888854331 1123457777777778766 3444433

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.98  E-value=1.3e-05  Score=73.11  Aligned_cols=92  Identities=10%  Similarity=-0.038  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ..+||+|||+|.||..+|..++..|+  +|.++|+++++.+..    .+.       .+....+.++ +++||+||++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            45799999999999999999998886  899999987655432    111       1233456665 899999999975


Q ss_pred             Chh---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          136 DPE---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       136 ~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.               -.+.+.   +++.+. .|++++++.++
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~---~~I~k~-~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFII---PNIVKH-SPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHH---HHHHHH-CTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHH---HHHHhh-CCCceEEeCCC
Confidence            331               112222   334333 78999998875

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.98  E-value=2.1e-05  Score=70.17  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHH-CCCcEE-EEcCCccc-----hhhHH---hCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRTKSK-----CDPLI---SLGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~-----~~~~~---~~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ...+||+|+| +|+||+.+++.+.. .++++. ++++++..     +..+.   ..|+..++++++++.++|+||-+++ 
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-   97 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-   97 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-
Confidence            3456999999 99999999999875 467755 56886432     11121   2367778899999999999998884 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChh-HHHHHHHHH
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHI  178 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l  178 (358)
                      +..+...+   .   ..++.|.-+|..+++-.. ..+.+.++.
T Consensus        98 p~a~~~~~---~---~~l~~Gv~vViGTTG~~~e~~~~L~~aa  134 (288)
T 3ijp_A           98 PQASVLYA---N---YAAQKSLIHIIGTTGFSKTEEAQIADFA  134 (288)
T ss_dssp             HHHHHHHH---H---HHHHHTCEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHH---H---HHHHcCCCEEEECCCCCHHHHHHHHHHh
Confidence            55555544   2   234567777766666433 333444444

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.96  E-value=3.6e-05  Score=69.29  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .++.|+|+ |++|+.+++.+.+.|++ .++..+|.+. +..  .|+..+.+++|+.+  .+|++++++| +.....++  
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~Dv~ii~vp-~~~~~~~v--   87 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNV--HGVPVFDTVKEAVKETDANASVIFVP-APFAKDAV--   87 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEE--TTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHH--
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCEEEEccC-HHHHHHHH--
Confidence            46888899 99999999999999998 4455555432 111  46778889999998  8999999997 66777777  


Q ss_pred             cccccccCCCCCE-EEEccCCC-hhHHHHHHHHHHhcCCeEec
Q 018303          147 KHGAASGMGPGKG-YVDVSTVD-GDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       147 ~~~~~~~l~~~~~-vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  187 (358)
                       .+..+   .|.- +|..+.+- ..+.+++.+..++.++.++.
T Consensus        88 -~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG  126 (294)
T 2yv1_A           88 -FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIG  126 (294)
T ss_dssp             -HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             -HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence             44443   3332 44445553 44567888888888887764

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.95  E-value=2.1e-05  Score=71.84  Aligned_cols=113  Identities=18%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---------CCcEE-EEcCCccchhh------HHh--CCCccCC--CHHHHhhc--CC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA---------GCDVT-VWNRTKSKCDP------LIS--LGAKYQP--SPDEVAAS--CD  128 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~---------g~~V~-~~~~~~~~~~~------~~~--~g~~~~~--~~~~~~~~--aD  128 (358)
                      ++|||||+|.||+.+++.+...         +.+|. ++|+++...+.      +..  .....++  |+++++++  .|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            5899999999999999999764         45554 57887654321      111  1122333  89999864  89


Q ss_pred             EEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCeEe
Q 018303          129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL  186 (358)
Q Consensus       129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~  186 (358)
                      +|+.|+|.........   +-....++.|+.|+..+-... ...+.|.+..++++..+.
T Consensus        83 vVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~  138 (327)
T 3do5_A           83 VLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLM  138 (327)
T ss_dssp             EEEECCCCC----CHH---HHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCCcccchhHH---HHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEE
Confidence            9999998654321122   223456789999886543332 245677777777777554

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=97.95  E-value=1.2e-05  Score=76.91  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             CCeEEEEcCChh-HHHHHHHHHHC-----CCcEEEEcCCccchhhHHh--------C----CCccCCCHHHHhhcCCEEE
Q 018303           70 PGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        70 ~~~IgIIG~G~i-G~~~a~~l~~~-----g~~V~~~~~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi  131 (358)
                      .+||+|||+|.+ |.+++..|...     +.+|.+||+++++++...+        .    .+..+.|+.+++++||+||
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 66688777766     6689999999876544221        1    1334568888999999999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      +++|.
T Consensus       108 iaag~  112 (472)
T 1u8x_X          108 AHIRV  112 (472)
T ss_dssp             ECCCT
T ss_pred             EcCCC
Confidence            99985

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.94  E-value=2.5e-05  Score=73.84  Aligned_cols=89  Identities=20%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC----CCHH---HH-hhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPD---EV-AASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~----~~~~---~~-~~~aDivi~~vp~~~~~~  141 (358)
                      .++|.|+|+|++|+.+++.|.+.|++|+++|++++.++.+.+.|....    ++.+   ++ +.++|+||++++.+....
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            357999999999999999999999999999999999888877665321    2222   22 467999999998655544


Q ss_pred             hhhcccccccccCCCCCEEEE
Q 018303          142 DVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~  162 (358)
                      .++    .....+.++..+|-
T Consensus        84 ~i~----~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           84 QLT----EMVKEHFPHLQIIA  100 (413)
T ss_dssp             HHH----HHHHHHCTTCEEEE
T ss_pred             HHH----HHHHHhCCCCeEEE
Confidence            444    33445566655553

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.93  E-value=2.7e-05  Score=71.01  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-----GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-----g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ...++||+|||+|.||..+|..+...|.  ++.++|+++++++..    .+.     .+....+..+.+++||+||++..
T Consensus         6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG   85 (326)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence            3455799999999999999999998876  899999987765422    111     22333344577899999999975


Q ss_pred             Chh---hHhh-hhccc--------ccccccCCCCCEEEEccC
Q 018303          136 DPE---SAMD-VACGK--------HGAASGMGPGKGYVDVST  165 (358)
Q Consensus       136 ~~~---~~~~-~~~~~--------~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.   .++. ++..+        +.+. ...|++++++.++
T Consensus        86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~-~~~p~a~ilvvtN  126 (326)
T 3vku_A           86 APQKPGETRLDLVNKNLKILKSIVDPIV-DSGFNGIFLVAAN  126 (326)
T ss_dssp             CC----------------CHHHHHHHHH-TTTCCSEEEECSS
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHH-hcCCceEEEEccC
Confidence            332   1111 11001        2222 2457889998865

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.91  E-value=2.7e-05  Score=70.92  Aligned_cols=91  Identities=11%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC-----CCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-----GAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~-----g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      +||+|||+|.+|..++..+...+.  +|.++|+++++++...    +.     ......+..+.+++||+||++.+.+..
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            699999999999999999988775  8999999876654321    11     122223456778999999999865421


Q ss_pred             ---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 ---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                                     ++.+.   +.+.+ ..|++++++.++
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~---~~i~~-~~p~a~iiv~tN  122 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIV---KPVVD-SGFDGIFLVAAN  122 (318)
T ss_dssp             -------CHHHHHHHHHHHH---HHHHH-TTCCSEEEECSS
T ss_pred             CCCCHHHHHHHHHHHHHHHH---HHHHH-hCCCeEEEEeCC
Confidence                           11222   23322 368899998744

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.87  E-value=8.5e-06  Score=76.95  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccchhhHHhC-------CCcc-------CCCHHHHhhc--CCEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-------GAKY-------QPSPDEVAAS--CDVTF  131 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~--aDivi  131 (358)
                      ++|+|+|+|.||+.+++.|.+.|   .+|.+++|+.++.+.+.+.       .+..       ..++++++++  +|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999988   3899999998877665431       1211       1245667777  89999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      .++|.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99974

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.85  E-value=4.7e-05  Score=69.13  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc--cchhhH----Hh------CC--CccCCCHHHHhhcCCEEEEe
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK--SKCDPL----IS------LG--AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~--~~~~~~----~~------~g--~~~~~~~~~~~~~aDivi~~  133 (358)
                      ..++|+|||+|.||..+|..++..|+ +|.++|+++  ++.+..    .+      ..  +....+ .+.+++||+||++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence            45799999999999999999999999 999999983  332211    11      11  222334 4668999999999


Q ss_pred             eCChh---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          134 LADPE---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       134 vp~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.+.               -.+.+.   +.+.+ ..|++++++.++
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~---~~i~~-~~p~a~vlvvsN  128 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSIT---RDIAK-HSPNAIIVVLTN  128 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHH---HHHHH-HCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHH-hCCCeEEEECCC
Confidence            85332               112222   33333 358889998875

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.84  E-value=9.8e-06  Score=69.36  Aligned_cols=67  Identities=10%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             CCeEEEEcCChhHHHHHHH--HHHCCCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQN--LLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~--l~~~g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .++|+|||+|++|+.+++.  +...|+++. ++|.++++...... .++...+++++++++.|++++|+|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            3689999999999999994  445677765 68998887654322 1233456788888767999999984

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.84  E-value=3.5e-05  Score=69.90  Aligned_cols=89  Identities=20%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h------CC--CccCCCHHHHhhcCCEEEEeeCChh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S------LG--AKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~------~g--~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      ||+|||+|.||..++..+...|+ +|.++|+++++++...    +      ..  +..+.+. +.+++||+||++.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            59999999999999999987777 6999999876654311    1      12  2223465 67899999999975432


Q ss_pred             h---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          139 S---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .               .+.++   +++.+. .|++++|+.++
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLA---EKIKAY-AKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEeCC
Confidence            1               33333   344333 48888888755

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.83  E-value=5.1e-05  Score=69.64  Aligned_cols=68  Identities=10%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchhh----HHhC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +.++||+|||+ |.+|..+|..+...|  .+|.++|++.++++.    +.+.     .+....+..+.+++||+||++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            34579999998 999999999999888  489999998765543    2221     23345678888999999999974

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.83  E-value=0.0001  Score=68.07  Aligned_cols=95  Identities=12%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC----ccch----h----hHHhC--CCccCCCHHHHhhcCCEEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT----KSKC----D----PLISL--GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~----~~~~----~----~~~~~--g~~~~~~~~~~~~~aDivi  131 (358)
                      .+.+.||.|+|+|.+|..+|+.+...|. +|+++||+    .++.    .    .+.+.  ......++.|+++++|++|
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI  268 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI  268 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence            5677899999999999999999999998 79999998    5442    1    22222  1122457999999999998


Q ss_pred             EeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      -+.. +    .++  +++..+.|+++.+|+++++-.+
T Consensus       269 G~Sa-p----~l~--t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          269 GVSR-G----NIL--KPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             ECSC-S----SCS--CHHHHTTSCSSCEEEECCSSSC
T ss_pred             EeCC-C----Ccc--CHHHHHhcCCCCEEEEcCCCCC
Confidence            8763 2    455  4566677889999999998654

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.81  E-value=3.2e-05  Score=70.20  Aligned_cols=91  Identities=11%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhH----HhC-----CCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPL----ISL-----GAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~----~~~-----g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      |||+|||+|.+|..++..+...+  .++.++|+++++++..    .+.     ......+..+.+++||+||++.+.+..
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999998876  5799999987665431    111     112222336678999999999864422


Q ss_pred             ---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 ---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                                     ++.+.   +.+.+ ..|++++++.++
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~---~~i~~-~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVV---PRVLE-AAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH---HHHHH-HCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHHHHHH---HHHHH-HCCCcEEEEecC
Confidence                           12222   33333 268889998754

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.80  E-value=4.5e-05  Score=59.08  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             CeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|+|||+    ++.|..+.+.|.+.|++|+.+++..+..     .|...+.++.|+-. .|++++++| +..+..++  
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v--   75 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEY--   75 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGH--
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHH--
Confidence            58999998    6799999999999999999988765433     25666778888877 999999997 78888888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       ++..+. ....+++  +.|..  .+++.+.+++.|+.++.
T Consensus        76 -~e~~~~-g~k~v~~--~~G~~--~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           76 -NYILSL-KPKRVIF--NPGTE--NEELEEILSENGIEPVI  110 (122)
T ss_dssp             -HHHHHH-CCSEEEE--CTTCC--CHHHHHHHHHTTCEEEE
T ss_pred             -HHHHhc-CCCEEEE--CCCCC--hHHHHHHHHHcCCeEEC
Confidence             655543 2334444  34432  35788888888988874

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.80  E-value=7.6e-05  Score=67.46  Aligned_cols=111  Identities=15%  Similarity=0.100  Sum_probs=78.5

Q ss_pred             CCCeEEEE-cC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303           69 LPGRIGFL-GM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgII-G~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~  144 (358)
                      ..++++|| |+ |++|..+++.+.+.|+++ +++.+|.+... .-.|+..+.+++|+.+  ..|++++++| +.....++
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G~~~-v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~vD~avI~vP-~~~~~~~~   88 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYGTNL-VGGTTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVP-PPFAAAAI   88 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCC-HHHHHHHH
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCCCcE-EEEeCCCcCcc-eECCeeeechHHHhhhcCCCCEEEEecC-HHHHHHHH
Confidence            34679999 99 999999999999999984 34444443110 0246777889999988  8999999997 66777777


Q ss_pred             cccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhc-CCeEec
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKAT-GASFLE  187 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~-~~~~~~  187 (358)
                         .+..+. .- ..+++.+.+.+ .+..++.+.+++. ++.++.
T Consensus        89 ---~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG  128 (305)
T 2fp4_A           89 ---NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG  128 (305)
T ss_dssp             ---HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred             ---HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence               444432 11 34455666644 4455788888888 888775

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.79  E-value=8.9e-05  Score=66.78  Aligned_cols=107  Identities=20%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhCCCccCCCHHHHhh--c-CCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAA--S-CDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~--~-aDivi~~vp~~~~~~~~~~  145 (358)
                      .++.|+|+ |++|+.+++.+.+.|++ .++..+|.+. +.  -.|+..+.+++|+.+  . +|++++++| +..+..++ 
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp-~~~~~~~v-   88 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVP-APFAPDAV-   88 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCC-GGGHHHHH-
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecC-HHHHHHHH-
Confidence            46888898 99999999999988998 4444444431 11  146788889999987  5 999999997 66777776 


Q ss_pred             ccccccccCCCCCE-EEEccCCC-hhHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGKG-YVDVSTVD-GDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~~-vi~~s~~~-~~~~~~l~~~l~~~~~~~~~  187 (358)
                        ++..+   .|.- +|..+.+- ..+.+++.+..++.++.++.
T Consensus        89 --~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG  127 (297)
T 2yv2_A           89 --YEAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGATIIG  127 (297)
T ss_dssp             --HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred             --HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence              44433   2332 44445554 34567888888888887664

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.77  E-value=3e-05  Score=70.40  Aligned_cols=89  Identities=12%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHH--CCCcE-EEEcCCccc-hhhH-HhCCCc-cCCCHHHHhh-----cCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLK--AGCDV-TVWNRTKSK-CDPL-ISLGAK-YQPSPDEVAA-----SCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~--~g~~V-~~~~~~~~~-~~~~-~~~g~~-~~~~~~~~~~-----~aDivi~~vp~~~  138 (358)
                      ..+|||||+|.||+.+++.+..  .+.++ .++|+++++ ...+ .+.|.. ..++.+++++     +.|+|++++|...
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~   83 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHH
Confidence            3589999999999999999955  35554 468998877 4443 344554 3456677754     4799999998433


Q ss_pred             hHhhhhcccccccccCCC--CCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGP--GKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~--~~~vi~~s~  165 (358)
                      +.+...       ..++.  |+.|++.+.
T Consensus        84 h~~~a~-------~al~a~~Gk~Vi~ekp  105 (312)
T 1nvm_B           84 HVQNEA-------LLRQAKPGIRLIDLTP  105 (312)
T ss_dssp             HHHHHH-------HHHHHCTTCEEEECST
T ss_pred             HHHHHH-------HHHHhCCCCEEEEcCc
Confidence            333332       22334  888888654

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=97.76  E-value=4.3e-05  Score=72.83  Aligned_cols=67  Identities=12%  Similarity=0.102  Sum_probs=50.6

Q ss_pred             CCeEEEEcCChh-HHHHHHHHHHC-----CCcEEEEcCCc--cchhhHH--------hCC----CccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGMGIM-GTPMAQNLLKA-----GCDVTVWNRTK--SKCDPLI--------SLG----AKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~G~i-G~~~a~~l~~~-----g~~V~~~~~~~--~~~~~~~--------~~g----~~~~~~~~~~~~~aDi  129 (358)
                      .+||+|||+|.+ |..++..|...     +.+|.+||+++  ++++...        ..+    +..+.|..+++++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999999 88888777763     56899999998  6654321        111    2334688889999999


Q ss_pred             EEEeeCC
Q 018303          130 TFAMLAD  136 (358)
Q Consensus       130 vi~~vp~  136 (358)
                      ||+++|.
T Consensus        87 VVitagv   93 (450)
T 1s6y_A           87 VTTQFRV   93 (450)
T ss_dssp             EEECCCT
T ss_pred             EEEcCCC
Confidence            9999984

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.75  E-value=7.6e-05  Score=68.16  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHhC-------CCccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL-------GAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-------g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      ...++|+|||+|.||..+|..+...|.  +|.++|++.++++.    +.+.       .+....+.+ .+++||+||++.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~a   95 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITA   95 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEcc
Confidence            455799999999999999999998887  89999998765543    2221       112244555 589999999987


Q ss_pred             CChh---hHh--------hhhcc-cccccccCCCCCEEEEccC
Q 018303          135 ADPE---SAM--------DVACG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       135 p~~~---~~~--------~~~~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..+.   .++        .++.. -+.+.+ ..|++++++.++
T Consensus        96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~-~~p~a~vlvvtN  137 (331)
T 4aj2_A           96 GARQQEGESRLNLVQRNVNIFKFIIPNVVK-YSPQCKLLIVSN  137 (331)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHH-HCTTCEEEECSS
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence            4321   111        11100 033333 368899998875

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.75  E-value=3.6e-05  Score=68.47  Aligned_cols=91  Identities=26%  Similarity=0.263  Sum_probs=60.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHH-CCCcEE-EEcCCccch--hhH------HhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPL------ISLGAKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~--~~~------~~~g~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      .+||+|+|+ |+||+.+++.+.. .|+++. ++|++++..  ..+      ...++...++++++++++|+||-+++ +.
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-p~   83 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PE   83 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-hH
Confidence            469999998 9999999998774 577766 678765431  111      11234456678888889999996663 45


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .....+   .   ..++.|..+|..+++.
T Consensus        84 ~~~~~~---~---~a~~~G~~vVigTtG~  106 (273)
T 1dih_A           84 GTLNHL---A---FCRQHGKGMVIGTTGF  106 (273)
T ss_dssp             HHHHHH---H---HHHHTTCEEEECCCCC
T ss_pred             HHHHHH---H---HHHhCCCCEEEECCCC
Confidence            555555   2   3345666666554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.73  E-value=7.4e-05  Score=64.72  Aligned_cols=69  Identities=17%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC-cc-----CCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KY-----QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-~~-----~~~~~~~~~~aDivi~~vp  135 (358)
                      .+.+|+|.|.|+ |.+|+.+++.|.+.|++|.+.+|++++.+.+...++ ..     ..++.+++..+|+||.+..
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            577899999987 999999999999999999999999887766654444 21     1445566777888877764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.71  E-value=0.00029  Score=61.50  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~~  146 (358)
                      |||+|+|+ |+||+.+++.+... ++++. ++|++               +++++++. .+|+||-+++ +..+...+  
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~-p~a~~~~~--   62 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH-PDVVMGNL--   62 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC-TTTHHHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC-hHHHHHHH--
Confidence            48999996 99999999999865 88876 45653               24556654 7999997774 45555554  


Q ss_pred             cccccccCCCCCEEEEccCCChhH-HHHHHHHHHhc-CCeEecCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT-GASFLEAPV  190 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~-~~~l~~~l~~~-~~~~~~~~~  190 (358)
                       .   ..++.|..+|-.+++.... .+.+.++.++. ++.++-.|.
T Consensus        63 -~---~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N  104 (245)
T 1p9l_A           63 -E---FLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPN  104 (245)
T ss_dssp             -H---HHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSC
T ss_pred             -H---HHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence             2   2345666666555554333 34445555433 444444443

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.70  E-value=6.3e-05  Score=69.01  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHh-CC------------------CccCCCHHHHhhcCCE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLIS-LG------------------AKYQPSPDEVAASCDV  129 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~-~g------------------~~~~~~~~~~~~~aDi  129 (358)
                      .||||+|+|.||+.+++.+... ++++ .++|++++....+.+ .|                  +....+.++++.++|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999999875 4565 457777665543332 22                  2345688899889999


Q ss_pred             EEEeeCChhh
Q 018303          130 TFAMLADPES  139 (358)
Q Consensus       130 vi~~vp~~~~  139 (358)
                      |++|+|...+
T Consensus        83 V~~aTp~~~h   92 (334)
T 2czc_A           83 IVDATPGGIG   92 (334)
T ss_dssp             EEECCSTTHH
T ss_pred             EEECCCcccc
Confidence            9999986543

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.70  E-value=0.00011  Score=66.90  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=48.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchh--hHHhCC----Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISLG----AKY---QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|||+ |.+|..++..|...|  .+|.++|+++....  .+.+..    +..   .++.+++++++|+||++.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~   78 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence            58999998 999999999999887  68999999862111  111111    111   14678889999999999853

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.65  E-value=5.9e-05  Score=65.44  Aligned_cols=85  Identities=7%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHH---HH-hhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPD---EV-AASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~---~~-~~~aDivi~~vp~~~~~~~  142 (358)
                      ++|.|+|+|.+|+.+++.|.+.|+ |++++++++..+.+. .++..    ..+.+   ++ ++++|.|++++|.+.....
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~   87 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIH   87 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHH
Confidence            589999999999999999999999 999999988776665 44322    12332   22 5689999999986533333


Q ss_pred             hhcccccccccCCCCCEEE
Q 018303          143 VACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi  161 (358)
                      +    ......+.++..+|
T Consensus        88 ~----~~~a~~~~~~~~ii  102 (234)
T 2aef_A           88 C----ILGIRKIDESVRII  102 (234)
T ss_dssp             H----HHHHHHHCSSSEEE
T ss_pred             H----HHHHHHHCCCCeEE
Confidence            2    23344456664444

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.62  E-value=6.2e-05  Score=68.95  Aligned_cols=110  Identities=14%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC------C--CcE-EEEcCCccchhh-H-----H----hCCCc-cCC---CHHHHh-h
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA------G--CDV-TVWNRTKSKCDP-L-----I----SLGAK-YQP---SPDEVA-A  125 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~------g--~~V-~~~~~~~~~~~~-~-----~----~~g~~-~~~---~~~~~~-~  125 (358)
                      ..+|||||+|.||+.+++.+...      |  .+| .++|+++++.+. +     .    ..++. .++   |+++++ .
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~   85 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALAR   85 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHS
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCC
Confidence            35899999999999999999764      2  454 468888765443 1     1    11221 344   888887 3


Q ss_pred             cCCEEEEeeCCh---hhHhhhhcccccccccCCCCCEEEEccCCC-hhHHHHHHHHHHhcCCeE
Q 018303          126 SCDVTFAMLADP---ESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASF  185 (358)
Q Consensus       126 ~aDivi~~vp~~---~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~  185 (358)
                      +.|+|+.|+|..   ..-...+      ...++.|+.|+...-.. ....++|.+..+++++.+
T Consensus        86 ~iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~  143 (331)
T 3c8m_A           86 DFDIVVDATPASADGKKELAFY------KETFENGKDVVTANKSGLANFWPEIMEYARSNNRRI  143 (331)
T ss_dssp             SCSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             CCCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEE
Confidence            589999999863   1111222      35677899888542211 134456777776777544

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.62  E-value=0.00014  Score=66.55  Aligned_cols=68  Identities=12%  Similarity=0.159  Sum_probs=49.2

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCC--CcEEEEcCCccchh--hHHhCCC----cc---CCCHHHHhhcCCEEEEeeCC
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISLGA----KY---QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~--~~~~~g~----~~---~~~~~~~~~~aDivi~~vp~  136 (358)
                      ..|||+|+| +|.+|..++..|...|  .+|.++|++++...  .+.+...    ..   .+++.++++++|+||++.+.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            346999999 7999999999999888  78999998765211  1222111    11   22567889999999999863

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.61  E-value=4.8e-05  Score=69.54  Aligned_cols=102  Identities=13%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---------CCcE-EEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA---------GCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~---------g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ++|||||+|.||+.+++.+...         +.+| .++|++.++.+.+.  ....++|.++++ +.|+|+.|+|.....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            5899999999999999999775         3454 46788765543221  123456888888 999999999855333


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhc
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKAT  181 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~  181 (358)
                      ...+      ...++.|+.|+...-... ...++|.+..+++
T Consensus        81 ~~~~------~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 LRLV------LPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HHHH------HHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HHHH------HHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            3333      245678888885321111 2344555555544

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.60  E-value=7.3e-05  Score=68.60  Aligned_cols=89  Identities=11%  Similarity=0.081  Sum_probs=56.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCcEE-EEcCCccchhhHHh-------------------CCCccCCCHHHHhhcCCE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi  129 (358)
                      +||||+|+|.||+.+++.|.. .++++. +.++++........                   .++....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            489999999999999999987 456764 45665443222211                   122222366777789999


Q ss_pred             EEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       130 vi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      |+.|+|.... ....   +.   .++.|+.+|+.+..
T Consensus        82 V~~atp~~~~-~~~a---~~---~l~aG~~VId~sp~  111 (337)
T 1cf2_P           82 VIDCTPEGIG-AKNL---KM---YKEKGIKAIFQGGE  111 (337)
T ss_dssp             EEECCSTTHH-HHHH---HH---HHHHTCCEEECTTS
T ss_pred             EEECCCchhh-HHHH---HH---HHHcCCEEEEecCC
Confidence            9999985433 2233   22   23345556666554

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.60  E-value=6.6e-05  Score=69.65  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=67.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC---cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ..+|.|||. |..|+.-++.+...|.   +|.++|+++...      |..    . +.+.++|+||-++.-......++ 
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~----~-~~i~~aDivIn~vlig~~aP~Lv-  281 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP----F-DEIPQADIFINCIYLSKPIAPFT-  281 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC----C-THHHHSSEEEECCCCCSSCCCSC-
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc----h-hhHhhCCEEEECcCcCCCCCccc-
Confidence            468999999 9999999999999998   999999875221      222    1 34668999999997655566667 


Q ss_pred             ccccccccC-CCCCEEEEccCC
Q 018303          146 GKHGAASGM-GPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l-~~~~~vi~~s~~  166 (358)
                       +++.++.| ++|.+|||++-.
T Consensus       282 -t~e~v~~m~k~gsVIVDVA~D  302 (394)
T 2qrj_A          282 -NMEKLNNPNRRLRTVVDVSAD  302 (394)
T ss_dssp             -CHHHHCCTTCCCCEEEETTCC
T ss_pred             -CHHHHhcCcCCCeEEEEEecC
Confidence             57778889 999999999754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.57  E-value=0.00022  Score=65.94  Aligned_cols=90  Identities=21%  Similarity=0.218  Sum_probs=56.9

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh-----CC-----CccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-----LG-----AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~-----~g-----~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +..+||+|+| +|.+|+.+.+.|.... +++.......+....+..     .+     +.. .+ ++.++++|+|++|+|
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDvVf~atp   91 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDAVFCCLP   91 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSEEEECCC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhcCCCEEEEcCC
Confidence            3446999999 8999999999998765 466665443322222211     11     111 12 445568999999998


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .... ....   .   .. +.|..+||.|...
T Consensus        92 ~~~s-~~~a---~---~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           92 HGTT-QEII---K---EL-PTALKIVDLSADF  115 (359)
T ss_dssp             TTTH-HHHH---H---TS-CTTCEEEECSSTT
T ss_pred             chhH-HHHH---H---HH-hCCCEEEECCccc
Confidence            5443 3333   2   23 6789999998754

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.51  E-value=0.00013  Score=66.54  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=68.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-------CCcEE-EEcCCccch------hhH----HhCC-Ccc-CCCHHHHhh--cCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-------GCDVT-VWNRTKSKC------DPL----ISLG-AKY-QPSPDEVAA--SCD  128 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-------g~~V~-~~~~~~~~~------~~~----~~~g-~~~-~~~~~~~~~--~aD  128 (358)
                      .+|+|||+|.||+.+++.+...       +.+|. ++|+++...      +.+    .+.+ +.. ..+.++++.  +.|
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD   84 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence            5899999999999999999763       34444 567765422      111    1123 211 115667764  489


Q ss_pred             EEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCeEe
Q 018303          129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL  186 (358)
Q Consensus       129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~  186 (358)
                      +|+.|+|.....+...   +.....++.|+.||...-... ...++|.+..++++..+.
T Consensus        85 vVVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~  140 (325)
T 3ing_A           85 LLVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIR  140 (325)
T ss_dssp             EEEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEE
Confidence            9999998542222212   223456788999886544322 345567777777776543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.48  E-value=0.00016  Score=64.38  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHHhhcCCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~  136 (358)
                      +|+|.|.|+|.+|+.+++.|.+.|++|++.+|++.+...+...++..    ..+++  +.++|+||.+...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            47999999999999999999999999999999987766655444322    12333  6789999988854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.45  E-value=6.2e-05  Score=65.30  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCC-------ccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGA-------KYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +.+|+|.|.| .|.||+.+++.|.+.| ++|.+++|++++.+.+...++       .-..++.++++.+|+||.+..
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~   97 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT   97 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence            3456899998 6999999999999999 899999998876543322111       111234566778899887775

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.45  E-value=0.00032  Score=67.04  Aligned_cols=117  Identities=18%  Similarity=0.074  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc----chhhHHhCCCccC--CCHHHHhhc-CCEEEEee--CC-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQ--PSPDEVAAS-CDVTFAML--AD-  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~----~~~~~~~~g~~~~--~~~~~~~~~-aDivi~~v--p~-  136 (358)
                      +..+++|.|||.|..|.+.|+.|.+.|++|.++|+++.    ..+.+.+.|+.+.  .+.++++.+ +|+||++.  |. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            45678999999999999999999999999999998642    2345566676543  234456666 89998864  32 


Q ss_pred             hhhHhhhh------cccccccccCCCCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303          137 PESAMDVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       137 ~~~~~~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~  183 (358)
                      .+.+....      .+..+++..+.+..+|--+ +.|+..+..-+...|...+.
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22222211      1122333333344433333 45666666667777777654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.44  E-value=0.0003  Score=64.55  Aligned_cols=68  Identities=12%  Similarity=0.198  Sum_probs=46.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHH-hCCC-----------------ccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLI-SLGA-----------------KYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~-~~g~-----------------~~~~~~~~~~~~aDiv  130 (358)
                      .||||+|+|+||+.+++.+... +++|. ++|+++....... ..++                 ....+.+++++++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            4899999999999999999875 45654 5677654332222 2222                 2233455666789999


Q ss_pred             EEeeCChh
Q 018303          131 FAMLADPE  138 (358)
Q Consensus       131 i~~vp~~~  138 (358)
                      +.|+|...
T Consensus        82 ~~aTp~~~   89 (340)
T 1b7g_O           82 VDTTPNGV   89 (340)
T ss_dssp             EECCSTTH
T ss_pred             EECCCCch
Confidence            99998543

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.42  E-value=0.0006  Score=60.63  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++.|||-++ +|+.+|..|...|..|+++....              .++.+.+++||+||.++..+.    ++ 
T Consensus       176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~p~----~i-  236 (303)
T 4b4u_A          176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGKAE----LI-  236 (303)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCSTT----CB-
T ss_pred             CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCCCC----cc-
Confidence            67899999999865 59999999999999999986532              367888999999999997543    34 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                       .   .+++++|+++||++..
T Consensus       237 -~---~d~vk~GavVIDVGin  253 (303)
T 4b4u_A          237 -Q---KDWIKQGAVVVDAGFH  253 (303)
T ss_dssp             -C---GGGSCTTCEEEECCCB
T ss_pred             -c---cccccCCCEEEEecee
Confidence             1   2358999999999653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.41  E-value=0.00053  Score=58.26  Aligned_cols=65  Identities=17%  Similarity=0.152  Sum_probs=48.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-----CCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|.|.|+ |.+|+.+++.|.+.|++|.+.+|++++.+.+. .++..     .+...+.+..+|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            58999995 99999999999999999999999987655432 22211     11111677889999998854

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.38  E-value=0.00014  Score=67.22  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--C--CcEE-EEcCCccchhhHHhC--CCccCCCHHHHhhcC----------------
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--G--CDVT-VWNRTKSKCDPLISL--GAKYQPSPDEVAASC----------------  127 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g--~~V~-~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~a----------------  127 (358)
                      ++|||||+|.||+.+++.+...  |  .+|. ++|++...   +.+.  |+..+++.++++++.                
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~   81 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT   81 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhh
Confidence            5899999999999999999885  3  4543 46654321   2222  444445566655433                


Q ss_pred             ----CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC----ChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCC
Q 018303          128 ----DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV----DGDTSKLINGHIKATGASFL-EAPVSGSKKPAE  198 (358)
Q Consensus       128 ----Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~----~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~  198 (358)
                          |+|+.|+|.....+.       ....++.|+.||...-.    .....++|. ..+++++.+. .+.+.+      
T Consensus        82 ~~~~DvVV~~t~~~~~a~~-------~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~------  147 (358)
T 1ebf_A           82 SPKPVILVDNTSSAYIAGF-------YTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGA------  147 (358)
T ss_dssp             CSSCEEEEECSCCHHHHTT-------HHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTT------
T ss_pred             ccCCcEEEEcCCChHHHHH-------HHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEcccccc------
Confidence                789999975433222       23567788888853221    112334444 4444443331 111111      


Q ss_pred             CCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Q 018303          199 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMM------ATFSEGLLHSEKVGL  266 (358)
Q Consensus       199 ~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~------~~~~Ea~~l~~~~G~  266 (358)
                               +- ..++.++.+++. |.++..+..+-++.     .|++..-+.      ..+.|++..+++.|.
T Consensus       148 ---------gi-Pii~~l~~~l~~-G~~I~~I~GIlnGT-----~nyil~~m~~~~~~g~~f~~~l~eAq~~Gy  205 (358)
T 1ebf_A          148 ---------GL-PIISFLREIIQT-GDEVEKIEGIFSGT-----LSYIFNEFSTSQANDVKFSDVVKVAKKLGY  205 (358)
T ss_dssp             ---------TS-SCHHHHHHHHHH-TCCEEEEEEECCHH-----HHHHHHHHSCSSCCCCCHHHHHHHHHHHTC
T ss_pred             ---------CC-cHHHHHHHHHHc-CCCeEEEEEEEeec-----ceeeecccccccccCCCHHHHHHHHHHcCC
Confidence                     11 245667766643 33444443321122     344444332      356788888888886

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.38  E-value=0.0003  Score=59.08  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=47.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.|. |.+|+.+++.|.+.|++|.+.+|++++.......++..       .+++.++++++|+||.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            68999987 99999999999999999999999876543221112211       1234456777888888775

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.38  E-value=0.00027  Score=61.95  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +..++|.|||+|.+|+.+++.|+..|. +|+++|++.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            445799999999999999999999997 899999986

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.38  E-value=0.00039  Score=63.93  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh--------CCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ++||+|+| +|.+|+.+.+.|.... .++....+..+....+..        ..+. ..+.++ +.++|+|++|+|... 
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~-   80 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGV-   80 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHH-
Confidence            36899999 6999999999998765 466654443222121211        1112 223444 478999999998543 


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .....   +.   .++.|..+|+.|...
T Consensus        81 s~~~a---~~---~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           81 FAREF---DR---YSALAPVLVDLSADF  102 (345)
T ss_dssp             HHHTH---HH---HHTTCSEEEECSSTT
T ss_pred             HHHHH---HH---HHHCCCEEEEcCccc
Confidence            33343   22   346788999998753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.36  E-value=0.0006  Score=62.27  Aligned_cols=114  Identities=13%  Similarity=0.030  Sum_probs=72.3

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCcc--chhhHHhCCCccC--CCHHHHh-hcCCEEEEe--eC-ChhhH
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS--KCDPLISLGAKYQ--PSPDEVA-ASCDVTFAM--LA-DPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~--~~~~~~~~g~~~~--~~~~~~~-~~aDivi~~--vp-~~~~~  140 (358)
                      .++|.|||.|.+|.+ +|+.|.+.|++|.++|++..  ..+.+.+.|+...  .+.+++. .++|+||+.  +| ..+.+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            468999999999995 99999999999999998643  3345666676543  3455555 579999986  33 22333


Q ss_pred             hhhh------ccccccccc-CCCCC-EEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303          141 MDVA------CGKHGAASG-MGPGK-GYVDV-STVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       141 ~~~~------~~~~~~~~~-l~~~~-~vi~~-s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ....      .+..+++.. +.++. +|--+ +.|+..+..-+...|+..+.
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            3221      111233332 33333 33333 55666667777778877664

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.34  E-value=0.00035  Score=63.92  Aligned_cols=93  Identities=12%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCC----ccchhh----HHhC------CCccCCCHHHHhhcC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT----KSKCDP----LISL------GAKYQPSPDEVAASC  127 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~----~~~~~~----~~~~------g~~~~~~~~~~~~~a  127 (358)
                      .+||.|+|+ |.+|..++..|...|+       +|.++|++    .++.+.    +.+.      .+....+..+++++|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            369999998 9999999999998875       79999998    433321    2221      122236788899999


Q ss_pred             CEEEEeeCChh---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          128 DVTFAMLADPE---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       128 Divi~~vp~~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      |+||++...+.               -+++++   +.+.+.-.+++++|+.|+
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~---~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQG---KAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHHSCTTCEEEECSS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHhcCCCeEEEEccC
Confidence            99999874321               122333   333332237788998874

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.30  E-value=5.2e-05  Score=64.64  Aligned_cols=67  Identities=9%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             CCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhh-cCCEEEEeeCCh
Q 018303           70 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAA-SCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~aDivi~~vp~~  137 (358)
                      .++|+|||+|++|..+++.+  .. |+++. ++|.++++...... .++...++++++++ +.|+|++|+|..
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            46899999999999999962  33 67654 58888876554322 12333567888876 589999999843

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.30  E-value=0.00081  Score=60.70  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--cEEEEcC--Cccchhh----HHhC-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNR--TKSKCDP----LISL-----GAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~--~V~~~~~--~~~~~~~----~~~~-----g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|+| +|.+|..++..|...|+  ++.++|+  ++++.+.    +.+.     ......+..+.++++|+||++.+.
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            5899999 99999999999988775  6888999  6544322    1111     111111235678999999999853


Q ss_pred             hh---------------hHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PE---------------SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~---------------~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +.               -+++++   +.+.+ ..++.++++.++
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~---~~i~~-~~p~~~viv~SN  120 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQ---SSLDE-HNDDYISLTTSN  120 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHH---HHHHT-TCSCCEEEECCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH---HHHHH-HCCCcEEEEeCC
Confidence            32               233333   33333 367888887644

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.29  E-value=0.00038  Score=62.37  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHh----CC----CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LIS----LG----AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~----~g----~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |||+|||+|.+|+.+|..|...+.  ++.++|.++++.+-    +.+    .+    +....+. +.+++||+|+++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecC
Confidence            689999999999999999887663  79999998754332    111    11    1122344 56889999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.25  E-value=0.0021  Score=55.05  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCC-CccC--CCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQ--PSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g-~~~~--~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ++.+++|.|||.|.+|..-++.|.+.|.+|++++++... .+.+.+.+ +.+.  .-..+.+.++|+||.++. .+.+..
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~~N~  106 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQAVNK  106 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHHHHH
Confidence            688899999999999999999999999999999986432 23333332 3221  111244678999998885 445544


Q ss_pred             hh
Q 018303          143 VA  144 (358)
Q Consensus       143 ~~  144 (358)
                      .+
T Consensus       107 ~I  108 (223)
T 3dfz_A          107 FV  108 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.25  E-value=0.0007  Score=62.58  Aligned_cols=95  Identities=19%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc-------cchhhHHh----C--CCccCCCHHHHhhcCCEEEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK-------SKCDPLIS----L--GAKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~-------~~~~~~~~----~--g~~~~~~~~~~~~~aDivi~  132 (358)
                      .+...||.|+|+|..|..+|+.+...|. +|+++|++.       +.....++    .  ......++.|+++.+|++|=
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG  264 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIG  264 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEe
Confidence            5667799999999999999999999998 999999873       22222211    1  11124578999999999876


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      +..     ..++  ++++.+.|+++.+|+.+|+-.+
T Consensus       265 ~Sa-----pgl~--T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          265 VSA-----PGVL--KAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             CCS-----TTCC--CHHHHHTSCSSCEEEECCSSSC
T ss_pred             cCC-----CCCC--CHHHHHhhCCCCEEEECCCCCc
Confidence            642     3555  4667788999999999998765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.25  E-value=0.00018  Score=61.54  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=47.6

Q ss_pred             CeEEEEc-CChhHHHHHHHHH-HCCCcEEEEcCCcc-chhhHHhC--CC-------ccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLL-KAGCDVTVWNRTKS-KCDPLISL--GA-------KYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~-~~g~~V~~~~~~~~-~~~~~~~~--g~-------~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ++|.|.| .|.||+.+++.|. +.|++|.+.+|+++ +.+.+...  ++       .-.+++.++++++|+||.+..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag   82 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM   82 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence            4599998 5999999999999 89999999999987 65554211  11       111234456778888888775

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.22  E-value=0.00011  Score=70.44  Aligned_cols=68  Identities=24%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCcc----CCCH---HHH-hhcCCEEEEeeCCh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY----QPSP---DEV-AASCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~----~~~~---~~~-~~~aDivi~~vp~~  137 (358)
                      .|+|-|+|+|++|..+|+.|...|++|++.|++++.++.+.+. ++..    .+++   .++ +++||+++.+++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            4799999999999999999999999999999999988877642 3321    1222   233 46799998888643

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.22  E-value=8.7e-05  Score=63.08  Aligned_cols=67  Identities=6%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCcc-chhh-HHhCCCc--cCCCHHHHhhc--CCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKS-KCDP-LISLGAK--YQPSPDEVAAS--CDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~-~~~~-~~~~g~~--~~~~~~~~~~~--aDivi~~vp~  136 (358)
                      ...+++|||+|++|+.+++.+  ...|+++. ++|.+++ +... .. .|+.  ..+++++++++  .|++++|+|.
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            345899999999999999984  44577755 5898887 6543 21 2343  34567777764  8999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.20  E-value=0.0015  Score=55.55  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-CCH----HHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSP----DEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-~~~----~~~~~~aDivi~~vp~  136 (358)
                      |+|.|.|+ |.+|+.+++.|.+.|++|.+.+|++++...+...++... .|+    .+.+..+|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            57999987 999999999999999999999998876654433232210 111    1677889999988853

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.20  E-value=0.00052  Score=63.17  Aligned_cols=91  Identities=14%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC------CcEEEEc-C-Cccc-hhh----HHh-CCCccC-CCHHHHhhcCCEEEEe
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG------CDVTVWN-R-TKSK-CDP----LIS-LGAKYQ-PSPDEVAASCDVTFAM  133 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g------~~V~~~~-~-~~~~-~~~----~~~-~g~~~~-~~~~~~~~~aDivi~~  133 (358)
                      ++||+|+| .|.+|+.+.+.|.+.+      .++.... + +..+ ...    +.. ..+... .+. +.+.++|+|++|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~a   87 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLA   87 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEEC
Confidence            46999999 8999999999999876      3555543 2 2211 211    111 111111 133 335689999999


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccCCChh
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      +|.. ....++   +.   . +.|..+||.|...-.
T Consensus        88 lg~~-~s~~~~---~~---~-~~G~~vIDlSa~~R~  115 (352)
T 2nqt_A           88 LPHG-HSAVLA---QQ---L-SPETLIIDCGADFRL  115 (352)
T ss_dssp             CTTS-CCHHHH---HH---S-CTTSEEEECSSTTTC
T ss_pred             CCCc-chHHHH---HH---H-hCCCEEEEECCCccC
Confidence            9854 344444   22   2 568999999876543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.19  E-value=0.00081  Score=63.48  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC---cEEEEc----CC--ccchhh---HH-------hC-CCc-cCCCHHHHhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWN----RT--KSKCDP---LI-------SL-GAK-YQPSPDEVAA  125 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~---~V~~~~----~~--~~~~~~---~~-------~~-g~~-~~~~~~~~~~  125 (358)
                      .+.+++|.|+|+|..|++++..|...|.   +|+++|    |+  ..+.+.   +.       .. +.. ...++.++++
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~  262 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK  262 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence            4567899999999999999999999998   799999    86  222111   21       11 110 1346889999


Q ss_pred             cCCEEEEeeCC--hhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          126 SCDVTFAMLAD--PESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       126 ~aDivi~~vp~--~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++|+||-++|.  ....+..       ...|.++.+++++++-
T Consensus       263 ~aDVlInaT~~~~G~~~~e~-------v~~m~~~~iVfDLynP  298 (439)
T 2dvm_A          263 DADVLISFTRPGPGVIKPQW-------IEKMNEDAIVFPLANP  298 (439)
T ss_dssp             TCSEEEECSCCCSSSSCHHH-------HTTSCTTCEEEECCSS
T ss_pred             cCCEEEEcCCCccCCCChHH-------HHhcCCCCEEEECCCC
Confidence            99999999986  2222222       3457788899999543

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.15  E-value=0.0014  Score=60.15  Aligned_cols=87  Identities=8%  Similarity=-0.011  Sum_probs=53.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCccchhh---------------------HHhCCCccCCCHHHHhhcC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDP---------------------LISLGAKYQPSPDEVAASC  127 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~---------------------~~~~g~~~~~~~~~~~~~a  127 (358)
                      +||||+|+|+||+.+++.+... +++|.+ .|++++....                     +...++....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999999876 577654 4544332211                     1122233333455666789


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEc
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                      |+|+.|+|..... ...   +  ...++.|+.+|+.
T Consensus        83 DiV~eatg~~~s~-~~a---~--~~~l~aG~~VI~s  112 (343)
T 2yyy_A           83 DIVVDGAPKKIGK-QNL---E--NIYKPHKVKAILQ  112 (343)
T ss_dssp             SEEEECCCTTHHH-HHH---H--HTTTTTTCEEEEC
T ss_pred             CEEEECCCccccH-HHH---H--HHHHHCCCEEEEC
Confidence            9999999754322 222   1  1345566666643

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.11  E-value=0.0021  Score=58.12  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-C--CcEEEEcCCccchh----hHHhCCC--ccC----CCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKA-G--CDVTVWNRTKSKCD----PLISLGA--KYQ----PSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~-g--~~V~~~~~~~~~~~----~~~~~g~--~~~----~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+||| +|.+|..++..|... +  .++.++|+++ +.+    .+.+...  ...    ++..+.+++||+||++.+.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            5899999 899999999999764 4  5799999976 322    1222211  111    2456778999999999854


Q ss_pred             hh---hH--------hhhhcc-cccccccCCCCCEEEEccC
Q 018303          137 PE---SA--------MDVACG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~---~~--------~~~~~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                      +.   .+        -.++.. -+.+.+ ..|++++++.++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~-~~p~a~vlvvtN  119 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAK-TCPKACIGIITN  119 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHH-HCTTSEEEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCcEEEEecC
Confidence            32   11        111200 023333 357888888864

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.11  E-value=0.00048  Score=63.67  Aligned_cols=89  Identities=17%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCcc-chhhHHh--------------CCCcc-CCCHHHHhh-cCCEEE
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKS-KCDPLIS--------------LGAKY-QPSPDEVAA-SCDVTF  131 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~-~~~~~~~--------------~g~~~-~~~~~~~~~-~aDivi  131 (358)
                      +||+|+| +|.+|+.+++.|.... ++|....+++. ..+.+..              ..... ..+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 8999999999998754 57765542221 1111110              01111 124556556 899999


Q ss_pred             EeeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +|+|. .......   +.+   ++.|..||+.+..
T Consensus        89 ~atp~-~~~~~~a---~~~---~~aG~~VId~s~~  116 (354)
T 1ys4_A           89 SALPS-DLAKKFE---PEF---AKEGKLIFSNASA  116 (354)
T ss_dssp             ECCCH-HHHHHHH---HHH---HHTTCEEEECCST
T ss_pred             ECCCc-hHHHHHH---HHH---HHCCCEEEECCch
Confidence            99984 3444444   333   3468889998765

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.09  E-value=0.00045  Score=63.15  Aligned_cols=90  Identities=20%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCcEEEEcCCc---cchhhHHh-----CC---CccCC--CHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTK---SKCDPLIS-----LG---AKYQP--SPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~~~~~~---~~~~~~~~-----~g---~~~~~--~~~~~~~~aDivi~~vp  135 (358)
                      ++|+|+| .|.+|+.+.+.|... .+++.....+.   ...+.+.+     .+   ..+..  +.+++.+++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            6899999 599999999999884 56766543222   22122221     11   22221  44555589999999998


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       ........   +.+   ++.|..+||.|...
T Consensus        85 -~~~s~~~~---~~~---~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           85 -HEVSHDLA---PQF---LEAGCVVFDLSGAF  109 (337)
T ss_dssp             -HHHHHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             -hHHHHHHH---HHH---HHCCCEEEEcCCcc
Confidence             34445554   333   45789999998764

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.05  E-value=0.0035  Score=58.96  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHhC-C-------CccCCCHHHHhh-c
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-G-------AKYQPSPDEVAA-S  126 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g-------~~~~~~~~~~~~-~  126 (358)
                      ++.+++|.|.|+|++|+..++.|.+.|.+|+ +.|++          .+.+..+.+. +       .... +.++++. +
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~  310 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLP  310 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCC
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCC
Confidence            5678999999999999999999999999987 56663          2223223221 1       1222 4556543 6


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ||+++-|.+.+     .+  +.+-...+ .-++|+.-++++. + .+..+.+.++|+.++
T Consensus       311 ~DIlvPcA~~n-----~i--~~~na~~l-~ak~VvEgAN~p~-t-~eA~~iL~~~GI~~~  360 (440)
T 3aog_A          311 VEFLVPAALEK-----QI--TEQNAWRI-RARIVAEGANGPT-T-PAADDILLEKGVLVV  360 (440)
T ss_dssp             CSEEEECSSSS-----CB--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHHTCEEE
T ss_pred             CcEEEecCCcC-----cc--chhhHHHc-CCcEEEecCcccc-C-HHHHHHHHHCCCEEE
Confidence            99999987533     23  22223334 4466666666654 3 345567778887665

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.05  E-value=0.00054  Score=60.99  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH---hCCCccCCCHHHHhhc-CCEEEEeeC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAAS-CDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~-aDivi~~vp  135 (358)
                      +|+|.|.|+|.+|+.+++.|.+.|++|++.+|+++....-.   ...+.-..++.++++. +|+||.+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            47899999999999999999999999999999876532100   0011112234455666 999988773

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.00051  Score=58.80  Aligned_cols=66  Identities=20%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +|+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++.+.+...      .+.-..++.++++++|+||.+..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            47899998 59999999999999999999999987764432110      11112234567778899888774

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.02  E-value=0.00094  Score=61.44  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-CCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+ .+.+++.+..|+|+-++..+......+   
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~---  252 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL---  252 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH---
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH---
Confidence            4679999999999999999999999999999999998888777765422 333444346889998886443333333   


Q ss_pred             ccccccCCCCCEEEEccCCC
Q 018303          148 HGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~  167 (358)
                          ..++++..++.++...
T Consensus       253 ----~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          253 ----KLLTYNGDLALVGLPP  268 (348)
T ss_dssp             ----TTEEEEEEEEECCCCC
T ss_pred             ----HHHhcCCEEEEECCCC
Confidence                4567777777765433

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=96.99  E-value=0.0011  Score=63.30  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCC----hhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           69 LPGRIGFLGMG----IMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        69 ~~~~IgIIG~G----~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      +.++|+|||++    ++|..+.+.+.+.| ..|..+++.....     .|...+.++.|+.+..|++++++| +.....+
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp-~~~~~~~   80 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT   80 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecC-HHHHHHH
Confidence            34689999998    89999999999885 6777777653322     367778888888888999999997 6777777


Q ss_pred             hcccccccccCCCCCEEEEccCCCh--hH-----HHHHHHHHHhcCCeEec
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDG--DT-----SKLINGHIKATGASFLE  187 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~--~~-----~~~l~~~l~~~~~~~~~  187 (358)
                      +   ++..+. .- +.+|..+.+-+  .+     .+++.+.+++.++.++.
T Consensus        81 v---~e~~~~-Gi-~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG  126 (457)
T 2csu_A           81 L---IQCGEK-GV-KGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (457)
T ss_dssp             H---HHHHHH-TC-CEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             H---HHHHHc-CC-CEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence            7   555443 12 23444454432  12     56778888888887774

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.97  E-value=0.004  Score=57.76  Aligned_cols=89  Identities=20%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            45799999999999999999999998 79999999988887777665421       12333222     4788888885


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  164 (358)
                      .+......+       ..++++ ..++.++
T Consensus       271 ~~~~~~~~~-------~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          271 RIETMMNAL-------QSTYCGSGVTVVLG  293 (373)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECC
T ss_pred             CHHHHHHHH-------HHHhcCCCEEEEEc
Confidence            433333333       456676 6666654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.95  E-value=0.0046  Score=57.36  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+       .+..+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            45799999999999999999999998 79999999988887777665321       12333332     3788888885


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEccC
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVST  165 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s~  165 (358)
                      .+..+...+       ..++++ ..++.++.
T Consensus       272 ~~~~~~~~~-------~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGVMRNAL-------ESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECSC
T ss_pred             CHHHHHHHH-------HHhhcCCcEEEEEcC
Confidence            433333333       456666 66666543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.95  E-value=0.0035  Score=58.30  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            45789999999999999999999998 79999999988887776665431       22233222     3788888886


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  164 (358)
                      .+......+       ..++++ ..++.++
T Consensus       273 ~~~~~~~~~-------~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NVSVMRAAL-------ECCHKGWGTSVIVG  295 (378)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECS
T ss_pred             CHHHHHHHH-------HHhhccCCEEEEEc
Confidence            433333333       456664 6666554

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.94  E-value=0.0043  Score=57.58  Aligned_cols=89  Identities=18%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+       .+..+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            45799999999999999999999998 79999999888877776665321       12222222     3677777775


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  164 (358)
                      .+......+       ..++++ ..++.++
T Consensus       271 ~~~~~~~~~-------~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLDTMVTAL-------SCCQEAYGVSVIVG  293 (374)
T ss_dssp             CHHHHHHHH-------HHBCTTTCEEEECS
T ss_pred             CHHHHHHHH-------HHhhcCCcEEEEec
Confidence            333333332       345565 5555554

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.94  E-value=0.0052  Score=57.04  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+..+       .+..+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            45799999999999999999999998 79999999988887777665321       12222222     3688887775


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  164 (358)
                      .+..+...+       ..++++ ..++.++
T Consensus       275 ~~~~~~~~~-------~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          275 TAQTLKAAV-------DCTVLGWGSCTVVG  297 (376)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECC
T ss_pred             CHHHHHHHH-------HHhhcCCCEEEEEC
Confidence            333333333       455666 6666554

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.92  E-value=0.0019  Score=59.05  Aligned_cols=89  Identities=13%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcC--CccchhhHHhC----C-------------------Cc--cCCCHH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNR--TKSKCDPLISL----G-------------------AK--YQPSPD  121 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~--~~~~~~~~~~~----g-------------------~~--~~~~~~  121 (358)
                      .||||+|+|+||+.+++.+... +.+|.. .|+  +++....+.+.    |                   +.  ...+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            5899999999999999998764 577664 453  33332222210    0                   00  112555


Q ss_pred             HHh---hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          122 EVA---ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       122 ~~~---~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++.   .++|+|+.|+|.....+ ..   .   ..++.|+..|++|..
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e-~a---~---~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTME-KA---G---AHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHH-HH---G---GGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhHH-HH---H---HHHhCCCeEEEeccC
Confidence            552   47999999998544333 22   1   234556555555543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.91  E-value=0.00069  Score=62.05  Aligned_cols=86  Identities=6%  Similarity=0.068  Sum_probs=60.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHH---HH-hhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPD---EV-AASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~---~~-~~~aDivi~~vp~~~~~~  141 (358)
                      .++|.|+|+|++|+.+++.|.+.|+ |.+.|+++++.+ +.+.+...    ..+.+   ++ ++++|.|+++++.+....
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            3589999999999999999999999 999999998888 76655432    12332   23 567899999997553333


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      .+.    .....+.+...++
T Consensus       193 ~~~----~~ar~~~~~~~ii  208 (336)
T 1lnq_A          193 HCI----LGIRKIDESVRII  208 (336)
T ss_dssp             HHH----HHHHTTCTTSEEE
T ss_pred             HHH----HHHHHHCCCCeEE
Confidence            332    3344556664555

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.90  E-value=0.0014  Score=60.30  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-----CCHHHHhh------cCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivi~~vp~  136 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+     .+..+.+.      ..|+|+.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            56799999999999999999999999 99999999887776665554321     12222221      46888877754


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..+...+       ..++++..++.++.
T Consensus       247 ~~~~~~~~-------~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKALEQGL-------QAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHHHHHH-------HHEEEEEEEEECCC
T ss_pred             HHHHHHHH-------HHHhcCCEEEEEcc
Confidence            33333333       34455666666543

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=96.90  E-value=0.00045  Score=66.31  Aligned_cols=64  Identities=13%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             CeEEEEcCChhHHH--HHHHHHH------CCCcEEEEcCCccchhhHH--------hCC----CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTP--MAQNLLK------AGCDVTVWNRTKSKCDPLI--------SLG----AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~--~a~~l~~------~g~~V~~~~~~~~~~~~~~--------~~g----~~~~~~~~~~~~~aDiv  130 (358)
                      |||+|||+|++|..  +...+..      .+.+|..+|.++++.+...        ..+    +..++|.++++++||+|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            58999999998854  2222332      1247999999987655321        112    34467899999999999


Q ss_pred             EEee
Q 018303          131 FAML  134 (358)
Q Consensus       131 i~~v  134 (358)
                      |++.
T Consensus        81 i~~~   84 (477)
T 3u95_A           81 INTA   84 (477)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            9986

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.90  E-value=0.00097  Score=59.66  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .+.++++.|+| .|.+|++++..|.+.|.+|.+++|+.++.+.+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~  160 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA  160 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHH
Confidence            35678999999 999999999999999999999999876655443

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.89  E-value=0.0037  Score=57.25  Aligned_cols=90  Identities=20%  Similarity=0.305  Sum_probs=57.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh------CCCccC-CCHHHHhhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS------LGAKYQ-PSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      +.||||||+ |..|+.+.+.|...- .++.........-+.+.+      ....+. .+.+++..++|+|++|+|. ...
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~-~~s   91 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPA-GAS   91 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCST-THH
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCc-HHH
Confidence            458999975 999999999999864 355544322211122221      122221 2455666789999999984 444


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCCh
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      +.+.   +    .+ .|..|||.|...-
T Consensus        92 ~~~~---~----~~-~g~~VIDlSsdfR  111 (351)
T 1vkn_A           92 YDLV---R----EL-KGVKIIDLGADFR  111 (351)
T ss_dssp             HHHH---T----TC-CSCEEEESSSTTT
T ss_pred             HHHH---H----Hh-CCCEEEECChhhh
Confidence            4454   3    33 7999999987643

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.87  E-value=0.00035  Score=64.01  Aligned_cols=90  Identities=11%  Similarity=0.059  Sum_probs=53.2

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC---CcEEEEc-C-CccchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhHhh
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG---CDVTVWN-R-TKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g---~~V~~~~-~-~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      +++|+|+| +|.+|+.+.+.|...+   +++.... + +..+.-.+....+...+ +. +.++++|+|+.|+|.. ....
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~-~s~~   80 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGE-LSAK   80 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHH-HHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCch-HHHH
Confidence            36899999 9999999999998864   4555443 3 22111011111111110 11 2346899999999743 3444


Q ss_pred             hhcccccccccCCCCCEEEEccCCC
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ..   +.   .++.|..+|+.|...
T Consensus        81 ~a---~~---~~~~G~~vId~s~~~   99 (336)
T 2r00_A           81 WA---PI---AAEAGVVVIDNTSHF   99 (336)
T ss_dssp             HH---HH---HHHTTCEEEECSSTT
T ss_pred             HH---HH---HHHcCCEEEEcCCcc
Confidence            44   32   245688999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.87  E-value=0.00059  Score=58.16  Aligned_cols=65  Identities=11%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCcc-CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKY-QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~-~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++.+....     ..+.- ..++.++++++|+||.+..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence            5899998 6999999999999999999999998765432210     01111 1133455667888887775

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.84  E-value=0.0046  Score=57.28  Aligned_cols=89  Identities=18%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHhh-----cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVAA-----SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~-----~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+       .+..+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            45799999999999999999999998 79999999888777766665321       12333222     3688888875


Q ss_pred             ChhhHhhhhcccccccccCCCC-CEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPG-KGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~-~~vi~~s  164 (358)
                      .+..+...+       ..++++ ..++.++
T Consensus       270 ~~~~~~~~~-------~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          270 NVKVMRAAL-------EACHKGWGVSVVVG  292 (373)
T ss_dssp             CHHHHHHHH-------HTBCTTTCEEEECS
T ss_pred             cHHHHHHHH-------HhhccCCcEEEEEe
Confidence            433333333       456666 6666654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.83  E-value=0.0011  Score=61.58  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-hCCCccC---CCHH---HHhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQ---PSPD---EVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~---~~~~---~~~~~aDivi~~vp~~~~~~  141 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|...+   .+.+   ++....|+|+.+++.+..+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  266 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLL  266 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHH
Confidence            567999999999999999999999999999999888776655 4454321   1211   22234677777775332223


Q ss_pred             hhhcccccccccCCCCCEEEEccC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..+       +.++++..+++++.
T Consensus       267 ~~~-------~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          267 PLF-------GLLKSHGKLILVGA  283 (366)
T ss_dssp             HHH-------HHEEEEEEEEECCC
T ss_pred             HHH-------HHHhcCCEEEEEcc
Confidence            222       34455556665543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.82  E-value=0.0018  Score=59.30  Aligned_cols=89  Identities=15%  Similarity=0.148  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----CCHHHHh----hcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVA----ASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~----~~aDivi~~vp~~~~  139 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|....     .+..+.+    ...|+|+.++..+..
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            4679999999999999999999999999999999888777666554321     1222222    246777777653333


Q ss_pred             HhhhhcccccccccCCCCCEEEEcc
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      +...+       ..++++..++.++
T Consensus       244 ~~~~~-------~~l~~~G~~v~~g  261 (339)
T 1rjw_A          244 FQSAY-------NSIRRGGACVLVG  261 (339)
T ss_dssp             HHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHH-------HHhhcCCEEEEec
Confidence            33332       3344555555554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.80  E-value=0.0012  Score=58.62  Aligned_cols=66  Identities=17%  Similarity=0.036  Sum_probs=49.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp~  136 (358)
                      |+|.|.|. |.+|+.+++.|.+. |++|.+.+|++++...+...++..       .+++.++++++|+||.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            57999985 99999999999987 999999999987665443333221       12345677889999888753

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.77  E-value=0.0017  Score=59.86  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC-CcEEEEc-CCccchhhHHh--------------CCCccCC-CHHHHhhcCCEEE
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWN-RTKSKCDPLIS--------------LGAKYQP-SPDEVAASCDVTF  131 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~-~~~~~~~~~~~--------------~g~~~~~-~~~~~~~~aDivi  131 (358)
                      ++||||+| +|.+|+.+.+.|.... +++.... .+....+.+..              ....+.+ +.++ ++++|+|+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf   82 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVL   82 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEE
Confidence            36899999 7999999999997653 4666553 22111111110              1122211 3344 47899999


Q ss_pred             EeeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +|+|.. ......   +.   .++.|..+|+.+..
T Consensus        83 ~atp~~-~s~~~a---~~---~~~aG~~VId~s~~  110 (350)
T 2ep5_A           83 SALPNE-LAESIE---LE---LVKNGKIVVSNASP  110 (350)
T ss_dssp             ECCCHH-HHHHHH---HH---HHHTTCEEEECSST
T ss_pred             ECCChH-HHHHHH---HH---HHHCCCEEEECCcc
Confidence            999743 344444   32   24568889998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.0049  Score=56.68  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC------CC-HHHH---h-----hcCCEEEEe
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------PS-PDEV---A-----ASCDVTFAM  133 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~------~~-~~~~---~-----~~aDivi~~  133 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+      .+ .+++   .     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            4579999999999999999999999999999999888777766664321      11 1222   2     247888888


Q ss_pred             eCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          134 LADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +.....+...       +..++++..++.++.
T Consensus       248 ~g~~~~~~~~-------~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          248 SGNEKCITIG-------INITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCHHHHHHH-------HHHSCTTCEEEECSC
T ss_pred             CCCHHHHHHH-------HHHHhcCCEEEEEec
Confidence            8643333333       345677777776653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.73  E-value=0.0038  Score=57.50  Aligned_cols=90  Identities=20%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC--CC---HHHH---h-----hcCCEEEEee
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ--PS---PDEV---A-----ASCDVTFAML  134 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~--~~---~~~~---~-----~~aDivi~~v  134 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+  .+   .++.   +     ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            45799999999999999999999998 89999999888777776665321  11   1121   1     2478888888


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .....+...+       ..++++..++.++.
T Consensus       251 g~~~~~~~~~-------~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          251 GAEASIQAGI-------YATRSGGTLVLVGL  274 (356)
T ss_dssp             CCHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred             CChHHHHHHH-------HHhcCCCEEEEEec
Confidence            6433333333       45677777776653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.70  E-value=0.0026  Score=57.87  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=48.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      +|+|.|.|. |.+|+.+++.|.+.|++|.+.+|++.+.+.+.+.++..       ..++.++++.+|+||.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            468999985 99999999999999999999999877655443323221       1234566778999988764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.69  E-value=0.0016  Score=60.25  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc---cchhhHHhCCCccCC--CHHHHh----hcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK---SKCDPLISLGAKYQP--SPDEVA----ASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~---~~~~~~~~~g~~~~~--~~~~~~----~~aDivi~~vp~~~~~  140 (358)
                      +.+|.|+|+|.+|...++.++..|.+|++.++++   ++.+.+.+.|+..++  +..+.+    ...|+|+.++..+..+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            7899999999999999999999999999999987   666655555554331  111111    2478888888643344


Q ss_pred             -hhhhcccccccccCCCCCEEEEccC
Q 018303          141 -MDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       141 -~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                       +..+       ..++++..++.++.
T Consensus       261 ~~~~~-------~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          261 LGNVI-------PLLGRNGVLGLFGF  279 (366)
T ss_dssp             HHHHG-------GGEEEEEEEEECSC
T ss_pred             HHHHH-------HHHhcCCEEEEEec
Confidence             4443       34455666666643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.0048  Score=56.62  Aligned_cols=90  Identities=12%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc------CCCHHHHhh-----cCCEEEEeeCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------QPSPDEVAA-----SCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~-----~aDivi~~vp~  136 (358)
                      .+++|.|+|+ |.+|..+++.++..|.+|++.++++++.+.+.+.|...      ..+..+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4579999999 99999999999999999999999887776665555321      123333332     36777777753


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ...++..+       ..++++..++.++.
T Consensus       249 ~~~~~~~~-------~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EAAIEAST-------RYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHHHHHT-------TSEEEEEEEEECCC
T ss_pred             HHHHHHHH-------HHHhcCCEEEEEeC
Confidence            33333333       44556666666644

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.68  E-value=0.0015  Score=60.59  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC---CCHH---HHhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPD---EVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~---~~~~---~~~~~aDivi~~vp~~~~~~~  142 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+   .+.+   ++....|+|+-++..+..+..
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~  273 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  273 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHH
Confidence            4579999999999999999999999999999999888877766665321   1211   122357888888864323333


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+       ..++++..++.++.
T Consensus       274 ~~-------~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          274 FT-------TLLKRDGTMTLVGA  289 (369)
T ss_dssp             HH-------TTEEEEEEEEECCC
T ss_pred             HH-------HHhccCCEEEEecc
Confidence            33       45566667776654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.67  E-value=0.0018  Score=61.44  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=64.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CC---cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GC---DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~---~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|.|||+|.||+.++..+.+. ++   +|++.|++....            ++.+.. ...++...+ +....+..+  
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~------------~~~~~~-g~~~~~~~V-dadnv~~~l--   77 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV------------DVAQQY-GVSFKLQQI-TPQNYLEVI--   77 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC------------CHHHHH-TCEEEECCC-CTTTHHHHT--
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh------------hHHhhc-CCceeEEec-cchhHHHHH--
Confidence            5799999999999999999874 45   688887754332            222222 234444445 344444555  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                       +.++   +++.+|||++  .+.....+.+++.+.|++|+|...
T Consensus        78 -~aLl---~~~DvVIN~s--~~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           78 -GSTL---EENDFLIDVS--IGISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -GGGC---CTTCEEEECC--SSSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -HHHh---cCCCEEEECC--ccccCHHHHHHHHHcCCCEEECCC
Confidence             3333   3458889865  344455778888888999999865

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.67  E-value=0.0033  Score=55.00  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +...+|.|||+|.+|+.+++.|+..|. ++.++|.+.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            456799999999999999999999996 688888764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.66  E-value=0.0017  Score=56.03  Aligned_cols=40  Identities=28%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCC--cEEEEcCCccchh
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~  107 (358)
                      +.+|+|.|.| .|.||+.+++.|.+.|+  +|.+.+|++++.+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~   58 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD   58 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc
Confidence            4567999998 59999999999999999  9999999876543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.65  E-value=0.0034  Score=56.20  Aligned_cols=67  Identities=22%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch------h---hHHhCCCcc-------CCCHHHHhhcCCEEEE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC------D---PLISLGAKY-------QPSPDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~------~---~~~~~g~~~-------~~~~~~~~~~aDivi~  132 (358)
                      +++|.|.|+ |.+|+.+++.|.+.|++|.+.+|++...      +   .+...++..       ..++.++++++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            468999986 9999999999999999999999975321      1   112233322       1234567788999998


Q ss_pred             eeCC
Q 018303          133 MLAD  136 (358)
Q Consensus       133 ~vp~  136 (358)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            8853

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.65  E-value=0.0023  Score=59.08  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHh-CCCc--------cCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLIS-LGAK--------YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~-~g~~--------~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+.+|+|.|.| .|.+|+.+++.|.+. |++|++.+|+++....+.. .++.        -..++.++++++|+||-+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            45678999998 599999999999987 9999999998876554433 1211        11234556778999997653

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.64  E-value=0.0092  Score=55.82  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHH-CCCcEE-EEcC----------CccchhhHHhC-C-------CccCCCHHHHhh-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVAA-  125 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~-~~~~----------~~~~~~~~~~~-g-------~~~~~~~~~~~~-  125 (358)
                      ++.+++|.|.|+|++|+..++.|.+ .|.+|+ +.|.          +++.+..+.+. +       .... +.++++. 
T Consensus       206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~  284 (415)
T 2tmg_A          206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL  284 (415)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcC
Confidence            5678999999999999999999998 999887 5565          23333333322 1       1222 4556543 


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +||+++-|...+.-+..-.       ..+ .-++|+.-++.+. +. +-.+.+.++|+.++
T Consensus       285 ~~DIliP~A~~n~i~~~~a-------~~l-~ak~V~EgAN~p~-t~-~a~~~l~~~Gi~~~  335 (415)
T 2tmg_A          285 DVDILVPAALEGAIHAGNA-------ERI-KAKAVVEGANGPT-TP-EADEILSRRGILVV  335 (415)
T ss_dssp             SCSEEEECSSTTSBCHHHH-------TTC-CCSEEECCSSSCB-CH-HHHHHHHHTTCEEE
T ss_pred             CCcEEEecCCcCccCcccH-------HHc-CCeEEEeCCCccc-CH-HHHHHHHHCCCEEE
Confidence            7999999985433333222       233 4456666666554 33 45566778887665

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.64  E-value=0.004  Score=57.09  Aligned_cols=31  Identities=23%  Similarity=0.438  Sum_probs=25.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEEEEc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  100 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~  100 (358)
                      ++||||+|+|++|+.+.+.|... .++|...+
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            35999999999999999999876 57766544

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.64  E-value=0.0022  Score=59.30  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC------CHHHHh-hcCCEEEEeeCC--hhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVA-ASCDVTFAMLAD--PES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~------~~~~~~-~~aDivi~~vp~--~~~  139 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|...+-      +..+.+ ...|+|+.+++.  +..
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  258 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  258 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence            45799999999999999999999999999999998888777766654221      222222 358999999864  222


Q ss_pred             HhhhhcccccccccCCCCCEEEEccC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                          +   ...+..++++..++.++.
T Consensus       259 ----~---~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          259 ----F---NIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ----T---TTGGGGEEEEEEEEECCC
T ss_pred             ----H---HHHHHHhcCCCEEEEecC
Confidence                2   333456677777777654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.59  E-value=0.0041  Score=58.37  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCCc---------------cchhhHHhC-C-------CccCCCHHH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTK---------------SKCDPLISL-G-------AKYQPSPDE  122 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~~---------------~~~~~~~~~-g-------~~~~~~~~~  122 (358)
                      ++.+++|.|.|+|++|+..++.|.+.|.+|+ +.|.++               +.+..+.+. +       .... +.++
T Consensus       209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~  287 (421)
T 2yfq_A          209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEE  287 (421)
T ss_dssp             CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---------------
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccc
Confidence            4667899999999999999999999999988 567762               222222221 1       1111 2233


Q ss_pred             Hh-hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          123 VA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       123 ~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ++ .+||+++-|.+...-+..-       ...+ ..++|+..++++. . .+..+.+.++|+.++
T Consensus       288 ~~~~~~DIliP~A~~n~i~~~~-------A~~l-~ak~VvEgAN~P~-t-~ea~~il~~~GI~~~  342 (421)
T 2yfq_A          288 FWTKEYDIIVPAALENVITGER-------AKTI-NAKLVCEAANGPT-T-PEGDKVLTERGINLT  342 (421)
T ss_dssp             -------CEEECSCSSCSCHHH-------HTTC-CCSEEECCSSSCS-C-HHHHHHHHHHTCEEE
T ss_pred             hhcCCccEEEEcCCcCcCCccc-------HHHc-CCeEEEeCCcccc-C-HHHHHHHHHCCCEEE
Confidence            33 3699999887533322222       2333 4567776666654 3 345566777787655

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.58  E-value=0.013  Score=54.87  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcC----------CccchhhHHhC-C-Cc--cCCCHHHHh-hcCCEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-AK--YQPSPDEVA-ASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~----------~~~~~~~~~~~-g-~~--~~~~~~~~~-~~aDiv  130 (358)
                      ++.+++|.|.|.|++|+..++.|.+.|.+|+ +.|+          +.+.+..+.+. + +.  .. +.++++ -+||++
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DVl  293 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEVL  293 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSEE
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceEE
Confidence            5778999999999999999999999999988 6776          33333333332 2 11  11 223433 379999


Q ss_pred             EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      +-|....     .+  +.+-.+.+ .=++|+.-++.+. + .+-.+.|.++|+.++
T Consensus       294 iP~A~~n-----~i--~~~~A~~l-~ak~V~EgAN~p~-t-~~A~~~L~~~Gi~~~  339 (419)
T 3aoe_E          294 VLAAREG-----AL--DGDRARQV-QAQAVVEVANFGL-N-PEAEAYLLGKGALVV  339 (419)
T ss_dssp             EECSCTT-----CB--CHHHHTTC-CCSEEEECSTTCB-C-HHHHHHHHHHTCEEE
T ss_pred             Eeccccc-----cc--ccchHhhC-CceEEEECCCCcC-C-HHHHHHHHHCCCEEE
Confidence            9887432     22  12222333 3357777776654 3 345577888887776

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.58  E-value=0.0044  Score=55.35  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=65.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAA--SCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~--~aDivi~~vp~  136 (358)
                      .+...+|.|||+|.+|+.++..|+..|. ++.++|.+.=....+..+       |...+....+.+.  +.++-+...+.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            3556799999999999999999999985 788898865222222211       1111111122221  35665665542


Q ss_pred             hhhHhhhhcccccccc-----c---CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303          137 PESAMDVACGKHGAAS-----G---MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG  192 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~-----~---l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~  192 (358)
                      .-.....+   ++++.     .   .+.-.+|||++- ....-..+.+.+...++.++...+.+
T Consensus       113 ~l~~~~~~---~~~~~~~~~~~l~~~~~~DlVid~~D-n~~~R~~in~~c~~~~~Pli~~gv~~  172 (292)
T 3h8v_A          113 NITTVENF---QHFMDRISNGGLEEGKPVDLVLSCVD-NFEARMTINTACNELGQTWMESGVSE  172 (292)
T ss_dssp             CTTSHHHH---HHHHHHHHHBSSSTTBCCSEEEECCS-SHHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred             cCCcHHHH---HHHhhhhcccccccCCCCCEEEECCc-chhhhhHHHHHHHHhCCCEEEeeeec
Confidence            21111111   11111     1   134567777643 34444566777777777777665543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.58  E-value=0.0013  Score=59.94  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +...+|.|||+|.+|+.+++.|+..|. +++++|++.
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            456799999999999999999999996 688888764

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.56  E-value=0.0051  Score=56.31  Aligned_cols=68  Identities=9%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hh----hHHhC------CCccCCCHHHHhhcC
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CD----PLISL------GAKYQPSPDEVAASC  127 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~----~~~~~------g~~~~~~~~~~~~~a  127 (358)
                      +...||.|+|+ |.||+.++-.|+....       ++.++|..+..  .+    .+.+.      .+...++..+.+++|
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a  101 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV  101 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence            34459999997 9999999999987432       68899986532  11    12221      123456788899999


Q ss_pred             CEEEEeeC
Q 018303          128 DVTFAMLA  135 (358)
Q Consensus       128 Divi~~vp  135 (358)
                      |+||++--
T Consensus       102 dvVvi~aG  109 (345)
T 4h7p_A          102 AIAIMCGA  109 (345)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999863

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.56  E-value=0.01  Score=55.65  Aligned_cols=94  Identities=16%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-----CCHHHHhh------cCCEEEEeeCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivi~~vp~  136 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+     .+..+.+.      ..|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            45799999999999999999999999 89999999888777766664321     12222221      37777777754


Q ss_pred             hhhH-hhhhcccccccccCCCCCEEEEccC
Q 018303          137 PESA-MDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..+ ...+   +-+...++++..++.++.
T Consensus       293 ~~~~~~~~~---~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVWPQIE---EVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHHHHH---HHHHHCSCCCCEEEECSC
T ss_pred             cHHHHHHHH---HHHHhccCCCcEEEEeCC
Confidence            4222 2222   111122366666666643

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.54  E-value=0.0074  Score=56.52  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHhC-CC------------ccCCCHHH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-GA------------KYQPSPDE  122 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g~------------~~~~~~~~  122 (358)
                      ++.+++|.|.|.|++|+..++.|.+.|.+|+ +.|.+          .+.+..+.+. +.            ....+.++
T Consensus       207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~  286 (421)
T 1v9l_A          207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  286 (421)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchh
Confidence            5778999999999999999999999999887 56652          2222222211 11            11213345


Q ss_pred             Hhh-cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          123 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       123 ~~~-~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ++. +||+++-|.-     .+.+  +.+-.+.+ .=++|+.-++.+. +. +-.+.+.++|+.++
T Consensus       287 ~~~~~~Dil~P~A~-----~~~I--~~~~a~~l-~ak~V~EgAN~p~-t~-~a~~~l~~~Gi~~~  341 (421)
T 1v9l_A          287 IFKLDVDIFVPAAI-----ENVI--RGDNAGLV-KARLVVEGANGPT-TP-EAERILYERGVVVV  341 (421)
T ss_dssp             GGGCCCSEEEECSC-----SSCB--CTTTTTTC-CCSEEECCSSSCB-CH-HHHHHHHTTTCEEE
T ss_pred             hhcCCccEEEecCc-----CCcc--chhhHHHc-CceEEEecCCCcC-CH-HHHHHHHHCCCEEe
Confidence            443 6999888772     2333  23333444 2356666566554 33 45567888887765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.52  E-value=0.0063  Score=57.83  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--CCCccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+.+++|+|+|+.          .-...+++.|.+.|.+|.+||+....  ...+  .++....++.++++++|.|++++
T Consensus       319 ~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          319 DVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVE--QASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             CCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHH--HHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCH--hHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            4577899999997          66889999999999999999987532  2211  25667778999999999999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      +.+. .+.+=+  +.+...|+ +.+|+|.-+..
T Consensus       397 ~~~~-f~~~d~--~~~~~~~~-~~~i~D~r~~~  425 (446)
T 4a7p_A          397 EWDA-FRALDL--TRIKNSLK-SPVLVDLRNIY  425 (446)
T ss_dssp             CCTT-TTSCCH--HHHHTTBS-SCBEECSSCCS
T ss_pred             CCHH-hhcCCH--HHHHHhcC-CCEEEECCCCC
Confidence            6543 332210  33334454 46888875554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.51  E-value=0.0025  Score=58.49  Aligned_cols=47  Identities=21%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCCc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAK  115 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~  115 (358)
                      .+.+|.|+|+|.+|...++.++..  |.+|++.++++++.+.+.+.|..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~  218 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD  218 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence            567999999999999999999988  99999999988877766665543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.51  E-value=0.0032  Score=52.73  Aligned_cols=43  Identities=14%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  111 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~  111 (358)
                      .+++|.|+| .|.+|..+++.++..|.+|++.++++++.+.+.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            346899999 6999999999999999999999998776555443

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.49  E-value=0.0048  Score=56.33  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=46.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--c-----EEEEcCCcc--chh----hHHhCC------CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGC--D-----VTVWNRTKS--KCD----PLISLG------AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~--~-----V~~~~~~~~--~~~----~~~~~g------~~~~~~~~~~~~~aDiv  130 (358)
                      +||.|+| +|.+|..++..|...|.  +     +.++|+++.  +.+    .+.+..      +....+..+.+++||+|
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV   83 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence            5899999 79999999999998775  5     889999642  221    122211      22345677889999999


Q ss_pred             EEee
Q 018303          131 FAML  134 (358)
Q Consensus       131 i~~v  134 (358)
                      |++.
T Consensus        84 vitA   87 (333)
T 5mdh_A           84 ILVG   87 (333)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9986

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.48  E-value=0.0042  Score=56.78  Aligned_cols=89  Identities=15%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----CCHHHHhh----cCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA----SCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~----~aDivi~~vp~~~~  139 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|....     .+..+.+.    ..|+|+.++.....
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            4679999999999999999999999999999999888877776664321     12222222    45666666643333


Q ss_pred             HhhhhcccccccccCCCCCEEEEcc
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ....+       ..++++..++.++
T Consensus       246 ~~~~~-------~~l~~~G~iv~~G  263 (340)
T 3s2e_A          246 FSQAI-------GMVRRGGTIALNG  263 (340)
T ss_dssp             HHHHH-------HHEEEEEEEEECS
T ss_pred             HHHHH-------HHhccCCEEEEeC
Confidence            33332       3344555555543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.47  E-value=0.0031  Score=56.71  Aligned_cols=87  Identities=15%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCH---H---HHhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSP---D---EVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~---~---~~~~~aDivi~~vp~~~~~~  141 (358)
                      .+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+.+.|.....+.   +   +.+...|+|+. +.. ....
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~~  202 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEVE  202 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHHH
Confidence            4579999998 999999999999999999999999888777766665322111   1   22245788888 753 2222


Q ss_pred             hhhcccccccccCCCCCEEEEcc
Q 018303          142 DVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                             ..+..++++..++.++
T Consensus       203 -------~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          203 -------ESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -------HHHTTEEEEEEEEEC-
T ss_pred             -------HHHHhhccCCEEEEEe
Confidence                   2334556666666654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.46  E-value=0.0052  Score=56.94  Aligned_cols=47  Identities=26%  Similarity=0.290  Sum_probs=39.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK  115 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~  115 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  229 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT  229 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC
Confidence            46799999999999999999999998 899999988877766665543

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=96.45  E-value=0.0072  Score=56.88  Aligned_cols=66  Identities=12%  Similarity=0.123  Sum_probs=43.6

Q ss_pred             CCeEEEEcCChh-HHHHHHHHHH----C-CCcEEEEcCCccchhhHH---h----C--CCccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGMGIM-GTPMAQNLLK----A-GCDVTVWNRTKSKCDPLI---S----L--GAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~G~i-G~~~a~~l~~----~-g~~V~~~~~~~~~~~~~~---~----~--g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+||+|||+|.. +..+...|..    . +.+|.++|+++++.+...   +    .  .+..+.|..+.+++||+||++.
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita   81 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF   81 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence            369999999985 2222223333    2 568999999987654321   1    1  1233467778899999999999


Q ss_pred             C
Q 018303          135 A  135 (358)
Q Consensus       135 p  135 (358)
                      .
T Consensus        82 g   82 (417)
T 1up7_A           82 R   82 (417)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.45  E-value=0.0029  Score=56.60  Aligned_cols=67  Identities=21%  Similarity=0.270  Sum_probs=48.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCc-------cchhhH---HhCCCcc-------CCCHHHHhhcCCEEE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-------SKCDPL---ISLGAKY-------QPSPDEVAASCDVTF  131 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~-------~~~~~~---~~~g~~~-------~~~~~~~~~~aDivi  131 (358)
                      +++|.|.|+ |.+|+.+++.|.+.|++|.+.+|++       ++.+.+   ...++..       ..++.++++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            468999986 9999999999999999999999986       322222   2233321       123456788899999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            88863

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.45  E-value=0.0054  Score=57.02  Aligned_cols=65  Identities=23%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCCC-ccCCC---HHHHhhcCCEEEE
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFA  132 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~  132 (358)
                      ..+++|+|||.|.+|+.+++.+++.|++|+++|++++... .+.+.-+ ....|   +.++++.+|+|+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            4567999999999999999999999999999998765321 1111100 01122   4566778998754

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.44  E-value=0.0012  Score=60.90  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCc---EEEE-cC-CccchhhHHhCCCccC-CCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCD---VTVW-NR-TKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~---V~~~-~~-~~~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++|+||| .|..|+.+.+.|...+++   +... ++ +..+.-.+........ .+. +.++++|+|+.|+| .......
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~-~~~~~~Dvvf~a~~-~~~s~~~   80 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE-TAFEGVDIALFSAG-SSTSAKY   80 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCT-TTTTTCSEEEECSC-HHHHHHH
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCH-HHhcCCCEEEECCC-hHhHHHH
Confidence            5899999 699999999999987663   3332 22 2111101110011111 122 33578999999997 4444444


Q ss_pred             hcccccccccCCCCCEEEEccCCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .   +.+   ++.|..+||.|...
T Consensus        81 a---~~~---~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           81 A---PYA---VKAGVVVVDNTSYF   98 (366)
T ss_dssp             H---HHH---HHTTCEEEECSSTT
T ss_pred             H---HHH---HHCCCEEEEcCCcc
Confidence            4   333   45788999998753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.44  E-value=0.0044  Score=56.63  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc----chh---hHHhCCCcc-------CCCHHHHhh--cCCEEE
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS----KCD---PLISLGAKY-------QPSPDEVAA--SCDVTF  131 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~----~~~---~~~~~g~~~-------~~~~~~~~~--~aDivi  131 (358)
                      .+|+|.|.|+ |.+|+.+++.|.+.|++|.+.+|++.    +.+   .+...++..       ..++.++++  ++|+||
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            3578999998 99999999999999999999999762    222   122223321       224556778  899999


Q ss_pred             EeeCC
Q 018303          132 AMLAD  136 (358)
Q Consensus       132 ~~vp~  136 (358)
                      .+.+.
T Consensus        89 ~~a~~   93 (346)
T 3i6i_A           89 STVGG   93 (346)
T ss_dssp             ECCCG
T ss_pred             ECCch
Confidence            98853

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.44  E-value=0.0021  Score=58.67  Aligned_cols=68  Identities=13%  Similarity=0.030  Sum_probs=45.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH--hCCCccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI--SLGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ...+|+|.|.|. |.||+.+++.|.+.|++|++.+|++.. ..+.  ...+.-..++.++++++|+||-+..
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            566789999987 999999999999999999999998654 1000  0011112235567888999987764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.43  E-value=0.0046  Score=55.22  Aligned_cols=66  Identities=26%  Similarity=0.261  Sum_probs=49.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccch--hhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKC--DPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~--~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      +|+|.|.|+ |.+|+.+++.|.+.| ++|.+.+|++++.  ..+...++..       ..++.++++.+|+||.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            468999987 999999999999888 9999999987653  2233333321       1234567888999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.43  E-value=0.0037  Score=57.82  Aligned_cols=46  Identities=26%  Similarity=0.252  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa  234 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA  234 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence            4579999999999999999999999999999998887776665554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.42  E-value=0.0076  Score=52.78  Aligned_cols=88  Identities=11%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe--eCChhhHh
Q 018303           67 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--vp~~~~~~  141 (358)
                      ++++|++-|-|++   .||.++|+.|++.|.+|.+.+|+.+..+.+.+.       .++ ....++..+.  +....+++
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~Dv~~~~~v~   74 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKL-------LEQ-LNQPEAHLYQIDVQSDEEVI   74 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-------HGG-GTCSSCEEEECCTTCHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh-cCCCcEEEEEccCCCHHHHH
Confidence            5778888888974   599999999999999999999987765544321       111 1112333333  33455666


Q ss_pred             hhhcccccccccCCCCCEEEEccC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .++   ++..+...+=.++||...
T Consensus        75 ~~~---~~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           75 NGF---EQIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHH---HHHHHHHCCCSEEEECCC
T ss_pred             HHH---HHHHHHhCCCCEEEeccc
Confidence            666   555555545556776643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.41  E-value=0.0031  Score=58.04  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch--hhHHhC-CCcc-----CCC---HHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISL-GAKY-----QPS---PDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~-g~~~-----~~~---~~~~~~~aDivi~~vp  135 (358)
                      +|+|.|.|. |.+|+.+++.|.+.|++|.+.+|++++.  +.+... ++..     ..+   +.++++.+|+||.+..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~   82 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   82 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence            468999985 9999999999999999999999987654  223221 2111     112   4566888999997764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.40  E-value=0.0026  Score=56.41  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.|. |.+|+.+++.|.+.  |++|.+.+|++++.+.+...++..       ..++.++++++|+||.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47889987 99999999999998  999999999887665544333321       1234566778999887764

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.40  E-value=0.0031  Score=57.61  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-Ec
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WN  100 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~  100 (358)
                      +||||+|+|+||+.+++.+... +++|.. .|
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            4899999999999999999875 566554 44

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.40  E-value=0.011  Score=55.33  Aligned_cols=109  Identities=16%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHhC-C------CccCCCHHHHh-hcC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL-G------AKYQPSPDEVA-ASC  127 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~-g------~~~~~~~~~~~-~~a  127 (358)
                      ++.++||.|-|+|++|+..|+.|.+.|.+|+ +.|.+          .+.+..+.+. |      .... +.++++ .+|
T Consensus       218 ~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~  296 (424)
T 3k92_A          218 KLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDC  296 (424)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCC
T ss_pred             CcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccc
Confidence            5678899999999999999999999999874 66765          2222222221 1      1222 445554 469


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ||++-|...     +.+  +.+-...+ .-++|+..++++. + .+..+.|.++|+.++
T Consensus       297 DIliPcA~~-----n~I--~~~~a~~l-~ak~V~EgAN~p~-t-~eA~~iL~~rGI~~~  345 (424)
T 3k92_A          297 DILVPAAIS-----NQI--TAKNAHNI-QASIVVERANGPT-T-IDATKILNERGVLLV  345 (424)
T ss_dssp             SEEEECSCS-----SCB--CTTTGGGC-CCSEEECCSSSCB-C-HHHHHHHHHTTCEEE
T ss_pred             cEEeecCcc-----ccc--ChhhHhhc-CceEEEcCCCCCC-C-HHHHHHHHHCCCEEE
Confidence            999877743     344  33333444 4566776666654 3 345677888887765

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.39  E-value=0.0021  Score=59.27  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC-CcEEE-EcCCc--cchhhHH-----------hCCCccC-CCHHHHhhcCCEEEE
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTV-WNRTK--SKCDPLI-----------SLGAKYQ-PSPDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~-~~~~~--~~~~~~~-----------~~g~~~~-~~~~~~~~~aDivi~  132 (358)
                      .++||||| .|..|+.+.+.|..+- .++.. .+++.  ++.....           ....... .+.+ .+.++|+|++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~   85 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFS   85 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEE
Confidence            46899999 6999999999987653 35543 33322  1121110           0011111 1333 3578999999


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      |+|.. ..+...   +.+   ++.|..+||.|...
T Consensus        86 a~p~~-~s~~~a---~~~---~~~G~~vIDlSa~~  113 (359)
T 4dpl_A           86 PLPQG-AAGPVE---EQF---AKEGFPVISNSPDH  113 (359)
T ss_dssp             CCCTT-THHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             CCChH-HHHHHH---HHH---HHCCCEEEEcCCCc
Confidence            99854 334444   322   45789999998754

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.39  E-value=0.0021  Score=59.27  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCC-CcEEE-EcCCc--cchhhHH-----------hCCCccC-CCHHHHhhcCCEEEE
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTV-WNRTK--SKCDPLI-----------SLGAKYQ-PSPDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~-~~~~~--~~~~~~~-----------~~g~~~~-~~~~~~~~~aDivi~  132 (358)
                      .++||||| .|..|+.+.+.|..+- .++.. .+++.  ++.....           ....... .+.+ .+.++|+|++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~   85 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFS   85 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEE
Confidence            46899999 6999999999987653 35543 33322  1121110           0011111 1333 3578999999


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      |+|.. ..+...   +.+   ++.|..+||.|...
T Consensus        86 a~p~~-~s~~~a---~~~---~~~G~~vIDlSa~~  113 (359)
T 4dpk_A           86 PLPQG-AAGPVE---EQF---AKEGFPVISNSPDH  113 (359)
T ss_dssp             CCCTT-THHHHH---HHH---HHTTCEEEECSSTT
T ss_pred             CCChH-HHHHHH---HHH---HHCCCEEEEcCCCc
Confidence            99854 334444   322   45789999998753

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.39  E-value=0.0037  Score=53.99  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=47.8

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+|+|.|.| .|.+|+.+++.|.+.  |++|.+.+|++++.+.+ ..++.       -..++.++++++|+||.+..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            357899998 599999999999998  89999999987654332 11111       11234566778999988774

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.39  E-value=0.0018  Score=59.39  Aligned_cols=90  Identities=16%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCC---cEEE-EcCC-ccchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhHhh
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGC---DVTV-WNRT-KSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~---~V~~-~~~~-~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      .++|+|+| .|.+|+.+.+.|.+.++   ++.. .+++ ..+.-.+....+...+ +.++ ++++|+|++|+|. .....
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~-~~~~DvV~~a~g~-~~s~~   83 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFD-FSSVGLAFFAAAA-EVSRA   83 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCC-GGGCSEEEECSCH-HHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHH-hcCCCEEEEcCCc-HHHHH
Confidence            36899999 79999999999986554   4443 3432 2111001100111110 2222 5689999999974 33444


Q ss_pred             hhcccccccccCCCCCEEEEccCCC
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      ..   +..   ++.|..+|+.|...
T Consensus        84 ~a---~~~---~~aG~kvId~Sa~~  102 (340)
T 2hjs_A           84 HA---ERA---RAAGCSVIDLSGAL  102 (340)
T ss_dssp             HH---HHH---HHTTCEEEETTCTT
T ss_pred             HH---HHH---HHCCCEEEEeCCCC
Confidence            44   222   34577888887543

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.39  E-value=0.015  Score=52.08  Aligned_cols=68  Identities=22%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcCC--hhHHHHHHHHHHCCCcEEEEcCCccchh-----hHH----hCC--CccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLI----SLG--AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~----~~g--~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+.+.+|+++|=|  ++..+++..+..+|++|.++.+..-...     .+.    +.|  +..+.+++++++++|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            4678899999996  9999999999999999999887432111     111    334  45578999999999999986


Q ss_pred             e
Q 018303          134 L  134 (358)
Q Consensus       134 v  134 (358)
                      +
T Consensus       225 ~  225 (307)
T 2i6u_A          225 T  225 (307)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.37  E-value=0.0022  Score=55.71  Aligned_cols=64  Identities=17%  Similarity=0.164  Sum_probs=42.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh----cCCEEEEee
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA----SCDVTFAML  134 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~aDivi~~v  134 (358)
                      ++|.|.|. |.||+.+++.|.+.|++|++.+|++++.+......+.-..+++++++    ..|+||.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~A   70 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCA   70 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECC
Confidence            47888876 99999999999999999999999876532100000000112334443    678888765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.37  E-value=0.004  Score=54.66  Aligned_cols=45  Identities=18%  Similarity=0.122  Sum_probs=37.0

Q ss_pred             cCCCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           65 AEDELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        65 ~~~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      |..+.++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+.+
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV   69 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34567788888875 9999999999999999999999987765543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.36  E-value=0.0052  Score=55.76  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=34.9

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +.+|+|.|.|. |.||+.+++.|.+.|++|++.+|+.++.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   49 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA   49 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHH
Confidence            45689999987 99999999999999999999999866543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.35  E-value=0.0044  Score=57.81  Aligned_cols=66  Identities=21%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCC-CccCCC---HHHHhhcCCEEEEe
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLG-AKYQPS---PDEVAASCDVTFAM  133 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g-~~~~~~---~~~~~~~aDivi~~  133 (358)
                      +.+++|+|||.|.+|+.+++.+++.|++|+++|+++.... ...+.. .....+   +.++++.+|+|...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            4567999999999999999999999999999998754321 111110 011223   55778889998553

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.35  E-value=0.0042  Score=54.56  Aligned_cols=88  Identities=13%  Similarity=0.050  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEcC-C-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhh
Q 018303           67 DELPGRIGFLGM-G-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~-G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~  142 (358)
                      .+.++++.|.|. | .||..+++.|.+.|++|++.+|+.++.+...+.       +.+ ....++.++.+  .+..+++.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~v~~   90 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ-------LAD-LGLGRVEAVVCDVTSTEAVDA   90 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT-TCSSCEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHh-cCCCceEEEEeCCCCHHHHHH
Confidence            567789999998 8 599999999999999999999987665443321       100 01123444444  23445555


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++   +++.+...+=.++||.+.
T Consensus        91 ~~---~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           91 LI---TQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HH---HHHHHHHSCCCEEEECCC
T ss_pred             HH---HHHHHHhCCCcEEEECCC
Confidence            55   444444444467777654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.33  E-value=0.0035  Score=56.93  Aligned_cols=69  Identities=14%  Similarity=0.124  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--CCC-------ccCCCHHHHhh--cCCEEEEee
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGA-------KYQPSPDEVAA--SCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~g~-------~~~~~~~~~~~--~aDivi~~v  134 (358)
                      .+.+|+|.|.|+ |.||+.+++.|.+.|++|++.+|+........+  .++       .-..++.++++  .+|+||.+.
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   96 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSA   96 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECC
Confidence            567789999987 999999999999999999999996543221101  011       11112445666  788888776


Q ss_pred             C
Q 018303          135 A  135 (358)
Q Consensus       135 p  135 (358)
                      .
T Consensus        97 ~   97 (330)
T 2pzm_A           97 A   97 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.33  E-value=0.0046  Score=55.53  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|.|.| .|.+|+.+++.|.+.|++|.+.+|++...+ +..     ..+. ..++.++++++|+||.+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            6899998 599999999999999999999999844333 221     1122 3445677888999988764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.33  E-value=0.0056  Score=55.14  Aligned_cols=65  Identities=32%  Similarity=0.412  Sum_probs=48.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc-chhh---HHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS-KCDP---LISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~---~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      ++|.|.|+ |.+|+.+++.|.+.|++|.+.+|++. +.+.   +...++..       .+++.++++++|+||.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            48999985 99999999999999999999999875 3222   22334322       1235567888999998885

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.33  E-value=0.014  Score=49.72  Aligned_cols=98  Identities=16%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ..|+.+|+|+ |+||+.+++.....|+++. .+|+..+                ++ ++++|++|=.+ .|..+...+  
T Consensus        11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------------~~-l~~~DVvIDFT-~P~a~~~~~--   70 (228)
T 1vm6_A           11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------------EE-LDSPDVVIDFS-SPEALPKTV--   70 (228)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------------EE-CSCCSEEEECS-CGGGHHHHH--
T ss_pred             ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------------cc-ccCCCEEEECC-CHHHHHHHH--
Confidence            4579999998 9999999988777888865 4665431                11 13689888444 345555555  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS  191 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~  191 (358)
                       +.   ..+.|.-+|-.++|-.....+..+.+.+. +.++-+|.+
T Consensus        71 -~~---~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNf  110 (228)
T 1vm6_A           71 -DL---CKKYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNF  110 (228)
T ss_dssp             -HH---HHHHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCC
T ss_pred             -HH---HHHcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEeccc
Confidence             22   23456666665666544443444444333 555555544

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.32  E-value=0.0036  Score=57.90  Aligned_cols=88  Identities=10%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             CeEEEEc-CChhHHHHHH-HHHHCCC---cEEEEc-CCcc-chhhHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLG-MGIMGTPMAQ-NLLKAGC---DVTVWN-RTKS-KCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~-~l~~~g~---~V~~~~-~~~~-~~~~~~~~g~~~--~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++|||+| .|.+|+.+.+ .|...++   .+.... ++.. ....+....+..  ..+.++ ++++|+|+.|+| .....
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g-~~~s~   79 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQG-GDYTN   79 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSC-HHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCC-chhHH
Confidence            5899999 8999999999 5665554   333332 2211 111111112222  223444 578999999997 44444


Q ss_pred             hhhcccccccccCCCCC--EEEEccCC
Q 018303          142 DVACGKHGAASGMGPGK--GYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~--~vi~~s~~  166 (358)
                      ...   +.+   .+.|.  ++||.+..
T Consensus        80 ~~a---~~~---~~~G~k~vVID~ss~  100 (367)
T 1t4b_A           80 EIY---PKL---RESGWQGYWIDAASS  100 (367)
T ss_dssp             HHH---HHH---HHTTCCCEEEECSST
T ss_pred             HHH---HHH---HHCCCCEEEEcCChh
Confidence            444   333   23454  89998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.31  E-value=0.0024  Score=57.09  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      |||.|.|. |-||+.+++.|.+.||+|++..|++...+      +.......+.++++|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence            68999987 99999999999999999999999875422      111111223456788887654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.0045  Score=55.13  Aligned_cols=87  Identities=14%  Similarity=0.056  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++.++++-|.|. |.||.++|+.|++.|++|.+.+|+.+..+...+.       +.+  ...++.++.+  .+..+++.+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~~   95 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADE-------IVG--AGGQAIALEADVSDELQMRNA   95 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HTT--TTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHH
Confidence            455677888865 8899999999999999999999987665544321       000  1233444443  234455666


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus        96 ~---~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           96 V---RDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHhCCCCEEEECCC
Confidence            6   444444444456777654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.29  E-value=0.012  Score=55.83  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch--hhHHhCCCccC--CCHHHHhhcCCEEEEeeCC---hhhH
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGAKYQ--PSPDEVAASCDVTFAMLAD---PESA  140 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~---~~~~  140 (358)
                      ..+++|.|||.|..|.+.|+.|.+.|++|.++|......  ..+. .|+.+.  ....+.++.+|.||+...-   .+.+
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~   81 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSL   81 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHH
Confidence            455789999999999999999999999999999754332  2344 465542  2124566689999887422   2222


Q ss_pred             hhhh------cccccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhcCC
Q 018303          141 MDVA------CGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       141 ~~~~------~~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ....      .+..+++. .++...+-|--++|+..+..-+...|...|.
T Consensus        82 ~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~  131 (439)
T 2x5o_A           82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGV  131 (439)
T ss_dssp             HHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            2211      11111221 2332233333356667777777777877654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.28  E-value=0.013  Score=51.04  Aligned_cols=89  Identities=17%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEee--CChhhHhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAML--ADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~v--p~~~~~~~  142 (358)
                      .+.++++-|.|. |.||.++++.|++.|++|++.+|+.++.+...+       .+.+... .+.++.+-+  ......+.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~~~~~~   81 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVAS-------HINEETGRQPQWFILDLLTCTSENCQQ   81 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHHSCCCEEEECCTTTCCHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------HHHhhcCCCceEEEEecccCCHHHHHH
Confidence            456678888866 899999999999999999999998776554332       1111111 222222222  23455666


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++   +++.+...+=.++||.+.
T Consensus        82 ~~---~~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           82 LA---QRIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             HH---HHHHHHCSCCSEEEECCC
T ss_pred             HH---HHHHHhCCCCCEEEECCc
Confidence            66   445444444567777654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.28  E-value=0.012  Score=52.00  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|++.+|++++.+.
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~   71 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE   71 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence            466788988865 999999999999999999999998765544

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.26  E-value=0.0032  Score=56.86  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=48.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCc-c-----chhh---HHhCCCcc-------CCCHHHHhhcCCEEEE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-S-----KCDP---LISLGAKY-------QPSPDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~-~-----~~~~---~~~~g~~~-------~~~~~~~~~~aDivi~  132 (358)
                      +|+|.|.|. |.+|+.+++.|.+.|++|.+.+|++ .     +.+.   +...++..       .+++.++++.+|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999985 9999999999999999999999986 2     2221   12233321       1235567888999999


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            885

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.25  E-value=0.009  Score=57.67  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCC--CHHHHhhcCCEEEEe--eCC-hhhHhh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQP--SPDEVAASCDVTFAM--LAD-PESAMD  142 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~--~~~~~~~~aDivi~~--vp~-~~~~~~  142 (358)
                      .++|.|||.|..|.+ +|+.|.+.|++|.++|..... .+.+.+.|+.+..  +. +.+.++|+||+.  +|. .+.+..
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~~d~vV~Spgi~~~~p~~~~  100 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRP-ENVLDASVVVVSTAISADNPEIVA  100 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTSCTTCHHHHH
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHH
Confidence            468999999999996 999999999999999976432 3456666765432  33 346779999986  332 222222


Q ss_pred             hh------cccccccccCCCCC--EEEEccCCChhHHHHHHHHHHhcCC
Q 018303          143 VA------CGKHGAASGMGPGK--GYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       143 ~~------~~~~~~~~~l~~~~--~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ..      .+..+++..+.+..  +-|--+.|+..+..-+...|+..|.
T Consensus       101 a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  149 (494)
T 4hv4_A          101 AREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL  149 (494)
T ss_dssp             HHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence            11      11123333332333  3333356667777777788877663

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.24  E-value=0.0049  Score=57.08  Aligned_cols=89  Identities=15%  Similarity=0.121  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-----CCHHHHhh-----cCCEEEEeeCCh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA-----SCDVTFAMLADP  137 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-----~aDivi~~vp~~  137 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|...+     .+..+.+.     ..|+|+-++..+
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            45799999999999999999998998 69999998887776665554321     12222221     357777776533


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEcc
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ......+       ..++++..++.++
T Consensus       270 ~~~~~~~-------~~l~~~G~iv~~G  289 (371)
T 1f8f_A          270 EILKQGV-------DALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHHHH-------HHHhcCCEEEEeC
Confidence            3333322       3445555555553

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.23  E-value=0.0071  Score=56.09  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=48.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      .+|+|.|.|. |.||+.+++.|.+.|++|++.+|++.........++..       ..++.++++.+|+||.+..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            4579999987 99999999999999999999999865533222112211       1234566778999988764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.23  E-value=0.011  Score=52.24  Aligned_cols=87  Identities=16%  Similarity=0.066  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++.++++.|.|. |.||+++++.|++.|++|++.+|+.+..+.+.+.       +.+.  ..++.++.+  .+..+++.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dl~d~~~v~~~   99 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE-------IAGV--GGKALPIRCDVTQPDQVRGM   99 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHHT--TCCCEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhc--CCeEEEEEcCCCCHHHHHHH
Confidence            567788888865 8999999999999999999999987766544321       1111  123333333  234455566


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus       100 ~---~~~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A          100 L---DQMTGELGGIDIAVCNAG  118 (276)
T ss_dssp             H---HHHHHHHSCCSEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCC
Confidence            5   444444444456676644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.23  E-value=0.0037  Score=57.64  Aligned_cols=90  Identities=20%  Similarity=0.158  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-hCCCcc---CCCHHH---HhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKY---QPSPDE---VAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~~~~~---~~~~aDivi~~vp~~~~~~  141 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+. +.|...   ..+.+.   +....|+|+-++..+..+.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~  259 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE  259 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHH
Confidence            567999999999999999999999999999999887776665 555432   122222   1234688888885332333


Q ss_pred             hhhcccccccccCCCCCEEEEccC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..+       ..++++..++.++.
T Consensus       260 ~~~-------~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          260 PYL-------SLLKLDGKLILMGV  276 (357)
T ss_dssp             HHH-------TTEEEEEEEEECSC
T ss_pred             HHH-------HHhccCCEEEEeCC
Confidence            333       45566666666643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.22  E-value=0.0082  Score=54.63  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=38.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  113 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g  113 (358)
                      .+++|.|.|+ |.+|..+++.++..|.+|++.++++++.+.+.+.|
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g  190 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIG  190 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC
Confidence            4578999998 99999999999999999999999887766665444

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.20  E-value=0.0032  Score=61.51  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +...+|.|||+|.+|+.+|+.|+..|. +++++|.+.
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            456899999999999999999999996 688898864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.20  E-value=0.011  Score=51.69  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=36.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|.+.+|+.++.+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   48 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQA   48 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            456778888865 8999999999999999999999987665543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.19  E-value=0.0057  Score=54.85  Aligned_cols=67  Identities=25%  Similarity=0.331  Sum_probs=48.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc-----chhhH---HhCCCcc-------CCCHHHHhhcCCEEEEe
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS-----KCDPL---ISLGAKY-------QPSPDEVAASCDVTFAM  133 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~-----~~~~~---~~~g~~~-------~~~~~~~~~~aDivi~~  133 (358)
                      +|+|.|.|+ |.+|+.+++.|.+.|++|.+.+|++.     +.+.+   ...++..       ..++.++++++|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            468999985 99999999999999999999999843     22221   2223322       12355678889999988


Q ss_pred             eCC
Q 018303          134 LAD  136 (358)
Q Consensus       134 vp~  136 (358)
                      .+.
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            853

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.18  E-value=0.023  Score=51.28  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEcCC--hhHHHHHHHHHHCCCcEEEEcCCccch-----hhHH----hCC--CccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+.+.+|+++|=|  ++..+++..+..+|++|.++.+..-..     +.+.    +.|  +..+.+++++++++|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            4678899999995  999999999999999999998743211     1111    335  45578999999999999985


Q ss_pred             eCCh-------hhHhhhh--cc-cccccccC-CCCCEEEEcc
Q 018303          134 LADP-------ESAMDVA--CG-KHGAASGM-GPGKGYVDVS  164 (358)
Q Consensus       134 vp~~-------~~~~~~~--~~-~~~~~~~l-~~~~~vi~~s  164 (358)
                      +--.       .+....+  |+ ++++++.. +++++|+.+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            5311       0000100  11 45566666 7777777774

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.17  E-value=0.02  Score=54.84  Aligned_cols=113  Identities=10%  Similarity=0.105  Sum_probs=73.7

Q ss_pred             CCCCeEEEEcCCh----------hHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------CCCccCCCHHHHh
Q 018303           68 ELPGRIGFLGMGI----------MGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------LGAKYQPSPDEVA  124 (358)
Q Consensus        68 ~~~~~IgIIG~G~----------iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------~g~~~~~~~~~~~  124 (358)
                      +.+++|+|+|+.-          -...+++.|.+.|.+|.+||+.....+....             .++....+..+++
T Consensus       327 ~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (467)
T 2q3e_A          327 VTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEAC  406 (467)
T ss_dssp             CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHH
T ss_pred             cCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHH
Confidence            5678999999874          7889999999999999999996432211000             0234456788999


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +++|.|++++..+ +.+.+=  -+.+...|+...+|+|.-+.-..    ..+.+...|..|..
T Consensus       407 ~~ad~~vi~t~~~-~f~~~~--~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~  462 (467)
T 2q3e_A          407 DGAHAVVICTEWD-MFKELD--YERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIET  462 (467)
T ss_dssp             TTCSEEEECSCCG-GGGGSC--HHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEE
T ss_pred             hCCcEEEEecCCh-hhhcCC--HHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEE
Confidence            9999999999654 444331  13444556666668887554322    11233444666554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.17  E-value=0.016  Score=51.81  Aligned_cols=89  Identities=12%  Similarity=-0.007  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      .+.++++.|.|.+   .||..+|+.|++.|++|.+.+|+.+..+.+.+        ..+......++..=+.+..+++.+
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~~~~~~Dv~d~~~v~~~   98 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDP--------LAESLGVKLTVPCDVSDAESVDNM   98 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHHTCCEEEECCTTCHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--------HHHhcCCeEEEEcCCCCHHHHHHH
Confidence            5677899999985   89999999999999999999998654333221        111111221222223344566666


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +   +++.+...+=.++||++..
T Consensus        99 ~---~~~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A           99 F---KVLAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             H---HHHHHHHSCCSEEEECCCC
T ss_pred             H---HHHHHHcCCCCEEEECCCc
Confidence            6   5554444445677777654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.17  E-value=0.0061  Score=59.87  Aligned_cols=88  Identities=16%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--C-CccCCCHHHH-hhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G-AKYQPSPDEV-AASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g-~~~~~~~~~~-~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|.|+|+|++|..+|+.|.+.|++|.+.|.++++.+.+...  | ..-...+.++ ++++|.++++++.+ +..-++  
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d-~~ni~~--  425 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDD-STNIFL--  425 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCH-HHHHHH--
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCc-hHHHHH--
Confidence            789999999999999999999999999999999877654310  1 1111122222 56799999999754 322222  


Q ss_pred             cccccccCCCCCEEEE
Q 018303          147 KHGAASGMGPGKGYVD  162 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~  162 (358)
                       ......+.+...+|-
T Consensus       426 -~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          426 -TLACRHLHSHIRIVA  440 (565)
T ss_dssp             -HHHHHHHCSSSEEEE
T ss_pred             -HHHHHHHCCCCEEEE
Confidence             334445666644553

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.15  E-value=0.0061  Score=56.70  Aligned_cols=46  Identities=17%  Similarity=0.113  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+|.+|...++.++..| .+|++.++++++.+.+.+.|.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa  241 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA  241 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC
Confidence            3578999999999999999999999 699999999888776666554

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.15  E-value=0.0063  Score=53.33  Aligned_cols=87  Identities=11%  Similarity=-0.025  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|-| .+.||+++|+.|++.|.+|.+.+|+.+..+...+.       +.+  ...++..+.+  .+..+++.+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~~   76 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEAA   76 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHH
Confidence            45666665554 58899999999999999999999987765543321       111  1123333333  345667777


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||.+.
T Consensus        77 ~---~~~~~~~G~iDiLVNNAG   95 (255)
T 4g81_D           77 F---SKLDAEGIHVDILINNAG   95 (255)
T ss_dssp             H---HHHHHTTCCCCEEEECCC
T ss_pred             H---HHHHHHCCCCcEEEECCC
Confidence            7   666666656677888754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.15  E-value=0.006  Score=56.07  Aligned_cols=46  Identities=22%  Similarity=0.348  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa  212 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA  212 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC
Confidence            45789999999999999999999998 89999998887776666554

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.15  E-value=0.014  Score=56.81  Aligned_cols=114  Identities=12%  Similarity=-0.018  Sum_probs=71.7

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCcc--chhhHHhCCCccC--CCHHHHhhcCCEEEEe--eCC-hhhHh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS--KCDPLISLGAKYQ--PSPDEVAASCDVTFAM--LAD-PESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~--~~~~~~~~g~~~~--~~~~~~~~~aDivi~~--vp~-~~~~~  141 (358)
                      .++|-|||.|..|.+ +|+.|.+.|++|.++|....  ..+.+.+.|+.+.  .+.+++..++|+||+.  +|. .+.+.
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHH
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHH
Confidence            468999999999996 79999999999999998642  2345666676543  3445555679999886  332 23333


Q ss_pred             hhh------ccccccccc-CCCCC-EE-EEccCCChhHHHHHHHHHHhcCC
Q 018303          142 DVA------CGKHGAASG-MGPGK-GY-VDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~------~~~~~~~~~-l~~~~-~v-i~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      ...      .+..+++.. +.++. +| |--++|+..+..-+...|+..|.
T Consensus        99 ~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~  149 (524)
T 3hn7_A           99 YMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI  149 (524)
T ss_dssp             HHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            221      112233332 32333 33 33356667777777777877653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.14  E-value=0.0059  Score=54.16  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.++++.|.|. |.||.++|+.|++.|++|++.+|+.++.+...+.       +.+  ...++.++.+  .+..+++.+
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~d~~~v~~~   91 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG-------LRA--AGHDVDGSSCDVTSTDEVHAA   91 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEECCCCCHHHHHHH
Confidence            455677888865 8999999999999999999999987665543321       100  1233444443  234455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus        92 ~---~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           92 V---AAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             H---HHHHHHHCSCCEEEECCC
T ss_pred             H---HHHHHHcCCCcEEEECCC
Confidence            5   444444444456777654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.14  E-value=0.0066  Score=55.55  Aligned_cols=42  Identities=14%  Similarity=0.070  Sum_probs=36.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI  110 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~  110 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~  206 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR  206 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            56799999999999999999999999 9999999877655443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.14  E-value=0.0077  Score=52.37  Aligned_cols=43  Identities=19%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .+.++++-|.|. |.||..+++.|.+.|++|++.+|+.+..+.+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAV   49 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            456678888876 8999999999999999999999987765544

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.14  E-value=0.011  Score=51.48  Aligned_cols=86  Identities=15%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++.++++-|.|. |.||+++|+.|++.|++|++.+|+.+..+.+.+.          +-.....+.+=+.+..+++.++ 
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~-   74 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY----------LGDNGKGMALNVTNPESIEAVL-   74 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH-
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceEEEEeCCCHHHHHHHH-
Confidence            456678888865 8899999999999999999999987665443321          1111112222233445556665 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                        +++.+...+=.++||.+.
T Consensus        75 --~~~~~~~g~iD~lv~nAg   92 (248)
T 3op4_A           75 --KAITDEFGGVDILVNNAG   92 (248)
T ss_dssp             --HHHHHHHCCCSEEEECCC
T ss_pred             --HHHHHHcCCCCEEEECCC
Confidence              444444444456777654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.13  E-value=0.0092  Score=53.56  Aligned_cols=43  Identities=9%  Similarity=0.041  Sum_probs=36.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      ++.++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+..
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA   71 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467788989976 8899999999999999999999987765543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.12  E-value=0.012  Score=52.01  Aligned_cols=87  Identities=16%  Similarity=0.088  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++.++++.|.|. |.||+.+++.|++.|++|.+.+|++++.+...+.       +.+  ...++.++.+  .+..+++.+
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dv~~~~~v~~~   89 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LRE--AGVEADGRTCDVRSVPEIEAL   89 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCceEEEECCCCCHHHHHHH
Confidence            355678888865 8999999999999999999999987654433210       111  0123333333  233455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||++.
T Consensus        90 ~---~~~~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           90 V---AAVVERYGPVDVLVNNAG  108 (277)
T ss_dssp             H---HHHHHHTCSCSEEEECCC
T ss_pred             H---HHHHHHhCCCCEEEECCC
Confidence            5   444444444456777654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.12  E-value=0.017  Score=51.11  Aligned_cols=88  Identities=9%  Similarity=0.020  Sum_probs=54.3

Q ss_pred             cCCCCCCeEEEEcC-Ch--hHHHHHHHHHHCCCcEEEEcCCc--cchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           65 AEDELPGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTK--SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        65 ~~~~~~~~IgIIG~-G~--iG~~~a~~l~~~g~~V~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      |..+.++++-|.|. |.  ||.++|+.|.+.|++|++.+|+.  +..+.+.+.           .....++.+=+....+
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~-----------~~~~~~~~~Dl~~~~~   89 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE-----------FNPAAVLPCDVISDQE   89 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG-----------GCCSEEEECCTTCHHH
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh-----------cCCceEEEeecCCHHH
Confidence            34567788989986 55  99999999999999999999986  222222111           1112222222334456


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++.++   +++.+...+=.++||++..
T Consensus        90 v~~~~---~~~~~~~g~id~li~nAg~  113 (280)
T 3nrc_A           90 IKDLF---VELGKVWDGLDAIVHSIAF  113 (280)
T ss_dssp             HHHHH---HHHHHHCSSCCEEEECCCC
T ss_pred             HHHHH---HHHHHHcCCCCEEEECCcc
Confidence            66666   5555544455677777543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.11  E-value=0.0063  Score=53.41  Aligned_cols=89  Identities=19%  Similarity=0.118  Sum_probs=54.7

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhh
Q 018303           66 EDELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  142 (358)
Q Consensus        66 ~~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~  142 (358)
                      .++.++++-|.|. |.||.++|+.|++.|++|++.+|+.++.+...+.       +.+ ....++.++.+  .+..+++.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dv~~~~~v~~   77 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVAD-------LDQ-LGSGKVIGVQTDVSDRAQCDA   77 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT-TSSSCEEEEECCTTSHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh-hCCCcEEEEEcCCCCHHHHHH
Confidence            3567778888864 8999999999999999999999987765543321       100 01123444443  23345555


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++   +++.+...+=.++||.+.
T Consensus        78 ~~---~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           78 LA---GRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             HH---HHHHHHHSCCSEEEECCC
T ss_pred             HH---HHHHHHhCCCCEEEECCC
Confidence            55   444444444456666644

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.09  E-value=0.029  Score=50.52  Aligned_cols=99  Identities=12%  Similarity=0.078  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch-----hhHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+.+.+|+++|= +++..+++..+..+|++|.++.+..-..     +.+.    +.|  +..+.+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            467889999997 8999999999999999999988743211     1111    335  455789999999999999855


Q ss_pred             CC-------hhhHhhhh--cc-cccccccCCCCCEEEEccC
Q 018303          135 AD-------PESAMDVA--CG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       135 p~-------~~~~~~~~--~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                      --       ..+....+  |+ +.++++..+++.+|+++.-
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP  272 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP  272 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSC
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCC
Confidence            21       01111111  11 4566666777888887743

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.09  E-value=0.029  Score=53.69  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .+.+++|+|+|+-          .=...+++.|.+.|.+|.+||+......     ......+++++++++|.|+++++.
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~-----~~~~~~~~~~~~~~ad~vvi~t~~  424 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYP-----GVEISDNLEEVVRNADAIVVLAGH  424 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBT-----TBCEESCHHHHHTTCSEEEECSCC
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccccc-----CcceecCHHHHHhcCCEEEEecCC
Confidence            4577899999974          2368899999999999999999765321     233457889999999999999965


Q ss_pred             hhhHhhhhcccccccccCC-CCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          137 PESAMDVACGKHGAASGMG-PGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~-~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      + +.+.+=+  +.+...|+ +..+|+|.-+....      +.+++.|..|....-
T Consensus       425 ~-~f~~~d~--~~~~~~~~~~~~~i~D~rn~~~~------~~~~~~g~~y~~ig~  470 (478)
T 3g79_A          425 S-AYSSLKA--DWAKKVSAKANPVIIDGRNVIEP------DEFIGKGFVYKGIGR  470 (478)
T ss_dssp             H-HHHSCCH--HHHHHHHCCSSCEEEESSSCSCH------HHHHTTTCEEEETTC
T ss_pred             H-HHHhhhH--HHHHHHhccCCCEEEECCCCCCH------HHHHhcCCEEEEecc
Confidence            4 4433210  33444565 47899997655431      233556777766543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.08  E-value=0.0085  Score=53.13  Aligned_cols=43  Identities=21%  Similarity=0.224  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      ++.++++-|.|. |.||+++|+.|++.|++|++.+|+.+..+..
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~   69 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAA   69 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            456778888865 8999999999999999999999987665543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.08  E-value=0.0059  Score=59.27  Aligned_cols=63  Identities=17%  Similarity=0.275  Sum_probs=48.5

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +|+|.|.| .|.+|+.+++.|.+.|++|++.+|++.+.+...   ....+...++++++|+||.+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence            68999998 599999999999999999999999876543211   1112344567788999998764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.07  E-value=0.01  Score=52.35  Aligned_cols=89  Identities=11%  Similarity=0.022  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+.++++.|.|. |.||.++|+.|++.|++|++.+|+.+..+.+.+.       +.+.-.++..+.+-+.+..+++.++ 
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~-   96 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALV-   96 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHH-
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHH-
Confidence            455667777765 8999999999999999999999987665543321       1111111222222233445556665 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                        +++.+...+=.++||.+.
T Consensus        97 --~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           97 --ESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             --HHHHHHHSCCCEEEECCC
T ss_pred             --HHHHHHcCCCCEEEECCC
Confidence              444444444456777654

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.07  E-value=0.014  Score=51.93  Aligned_cols=69  Identities=14%  Similarity=-0.017  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcC---ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      .+.+.+|+++|=   +++..+++..+..+|++|.++.+..-..+.+.+.|+..+.+++++++++|+|.. +..
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            467889999997   899999999999999999998874322222334467778899999999999999 753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.07  E-value=0.0058  Score=53.96  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=46.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp  135 (358)
                      +|.|.|. |.+|+.+++.|.+.  |++|.+.+|++++.+.+...++..       ..++.++++++|+||.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4788886 99999999999988  999999999887665544333321       1234566778898887764

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.07  E-value=0.0065  Score=55.29  Aligned_cols=65  Identities=12%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCcc--chh----hHHhCC------CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKS--KCD----PLISLG------AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~--~~~----~~~~~g------~~~~~~~~~~~~~aDiv  130 (358)
                      |||.|+|. |.+|+.++..|...|+       +|.++|+.+.  +.+    .+.+..      +....+..++++++|+|
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~V   84 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCEE
Confidence            68999996 9999999999998886       8999998641  111    111111      12224677888999999


Q ss_pred             EEeeC
Q 018303          131 FAMLA  135 (358)
Q Consensus       131 i~~vp  135 (358)
                      |.+..
T Consensus        85 ih~Ag   89 (327)
T 1y7t_A           85 LLVGA   89 (327)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98753

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.06  E-value=0.0025  Score=58.32  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=52.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCc---EEEEcCCccchhh--HHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDP--LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++|+||| .|..|+.+.+.|....|+   +.........-+.  +............+.++++|+|+.|+| ....+...
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~s~~~a   80 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAG-SAMSKVQA   80 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSC-HHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCC-hHHHHHHH
Confidence            5899999 699999999999987544   4433221111111  110001111001133578999999998 44445444


Q ss_pred             cccccccccCCCCCEEEEccCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                         +.+   ++.|..+||.|..
T Consensus        81 ---~~~---~~~G~~vID~Sa~   96 (344)
T 3tz6_A           81 ---PRF---AAAGVTVIDNSSA   96 (344)
T ss_dssp             ---HHH---HHTTCEEEECSST
T ss_pred             ---HHH---HhCCCEEEECCCc
Confidence               333   4568899999875

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.05  E-value=0.0082  Score=53.90  Aligned_cols=65  Identities=9%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp  135 (358)
                      +|+|.|.|. |.+|+.+++.|.+.|++|++.+|+++... .....+.-..++.++++.  +|+||.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            368999987 99999999999999999999998754311 111112222345566664  899988774

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.04  E-value=0.011  Score=51.08  Aligned_cols=87  Identities=14%  Similarity=0.011  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +.++++-|.|. |.||+.+++.|.+.|++|++.+|+++..+.+.+.       +.+.  ..++.++.+  .+..+++.++
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~D~~~~~~~~~~~   73 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS-------MKEK--GFKARGLVLNISDIESIQNFF   73 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhc--CCceEEEEecCCCHHHHHHHH
Confidence            45678888865 8999999999999999999999987665543321       1111  233444443  2445566666


Q ss_pred             cccccccccCCCCCEEEEccCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                         +++.+...+=.++||++..
T Consensus        74 ---~~~~~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           74 ---AEIKAENLAIDILVNNAGI   92 (247)
T ss_dssp             ---HHHHHTTCCCSEEEECCCC
T ss_pred             ---HHHHHHcCCCCEEEECCCC
Confidence               5554444445677777543

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.04  E-value=0.0041  Score=57.70  Aligned_cols=93  Identities=19%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCC-CcEE-EE-cC-Ccc-chhhH-------------HhCCCccCCCHHHHhhcC
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAG-CDVT-VW-NR-TKS-KCDPL-------------ISLGAKYQPSPDEVAASC  127 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g-~~V~-~~-~~-~~~-~~~~~-------------~~~g~~~~~~~~~~~~~a  127 (358)
                      .+.++|||||| .|..|+.+.+.|...- .++. ++ ++ +.- +....             .+.-+... +.++.++++
T Consensus        16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~-~~~~~~~~~   94 (381)
T 3hsk_A           16 HMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC-KPEGNFLEC   94 (381)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES-SSCTTGGGC
T ss_pred             cCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC-chhhhcccC
Confidence            34556899999 5999999999998754 4564 33 33 211 11110             11111111 122146789


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      |+|++|+| ....+...   +.+   .+.|..+||.|...
T Consensus        95 Dvvf~alp-~~~s~~~~---~~~---~~~G~~VIDlSa~f  127 (381)
T 3hsk_A           95 DVVFSGLD-ADVAGDIE---KSF---VEAGLAVVSNAKNY  127 (381)
T ss_dssp             SEEEECCC-HHHHHHHH---HHH---HHTTCEEEECCSTT
T ss_pred             CEEEECCC-hhHHHHHH---HHH---HhCCCEEEEcCCcc
Confidence            99999997 44455554   333   35788999998753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.03  E-value=0.033  Score=51.26  Aligned_cols=90  Identities=12%  Similarity=0.049  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCCcc---C---CCHHHH---h------hcCCEEEE
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKY---Q---PSPDEV---A------ASCDVTFA  132 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~---~---~~~~~~---~------~~aDivi~  132 (358)
                      .+.+|.|+|+|.+|...++.++..|.+ |++.++++++.+.+++.+...   .   .+.+++   +      ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            467899999999999999999999987 999999888776655431010   0   011221   1      13677777


Q ss_pred             eeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          133 MLADPESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++..+......+       ..++++..++.++.
T Consensus       259 ~~g~~~~~~~~~-------~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          259 CTGVESSIAAAI-------WAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCCHHHHHHHH-------HHSCTTCEEEECCC
T ss_pred             CCCChHHHHHHH-------HHhcCCCEEEEEcc
Confidence            775332333333       45666666666643

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.02  E-value=0.028  Score=50.41  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             CCCCCeEEEEcC---ChhHHHHHHHHHHC-CCcEEEEcCCccch-----hhHHhCCC--ccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGM---GIMGTPMAQNLLKA-GCDVTVWNRTKSKC-----DPLISLGA--KYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~---G~iG~~~a~~l~~~-g~~V~~~~~~~~~~-----~~~~~~g~--~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+.+.+|+++|=   +++..+++..+..+ |++|.++.+..-..     +.+.+.|.  ..+.+++++++++|+|..-.-
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            467889999998   59999999999999 99999988742211     22233353  456899999999999988763


Q ss_pred             Chhh------Hhhh--hcc-cccccccCCCCCEEEEccC
Q 018303          136 DPES------AMDV--ACG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       136 ~~~~------~~~~--~~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                       ..+      ....  -|+ ++++++..+++++|++|.-
T Consensus       231 -q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  268 (310)
T 3csu_A          231 -QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  268 (310)
T ss_dssp             -----------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred             -cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence             211      1110  111 4666677777888887743

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.01  E-value=0.014  Score=54.21  Aligned_cols=92  Identities=12%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      ..++-|+|+|.+|+++++.++..|++|+++|..++...             .+-+..+|-++...| ...... +   . 
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~-------------~~~fp~a~~~~~~~p-~~~~~~-~---~-  264 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT-------------TARFPTADEVVVDWP-HRYLAA-Q---A-  264 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC-------------TTTCSSSSEEEESCH-HHHHHH-H---H-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc-------------cccCCCceEEEeCCh-HHHHHh-h---c-
Confidence            35899999999999999999999999999998664321             112345665554443 222221 1   0 


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHh
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKA  180 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~  180 (358)
                      ..-.+.+++.++-++.....|...+..+|+.
T Consensus       265 ~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~  295 (386)
T 2we8_A          265 EAGAIDARTVVCVLTHDPKFDVPLLEVALRL  295 (386)
T ss_dssp             HHTCCCTTCEEEECCCCHHHHHHHHHHHTTS
T ss_pred             cccCCCCCcEEEEEECChHhHHHHHHHHhcC
Confidence            0011567788888888877888888888754

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.99  E-value=0.011  Score=51.96  Aligned_cols=87  Identities=17%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             cCCCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHh
Q 018303           65 AEDELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAM  141 (358)
Q Consensus        65 ~~~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~  141 (358)
                      |..+.++++.|.|. |.||+++|+.|++.|++|.+.+|+.++.+.+.+          ++  ..++.++.+  .+..+++
T Consensus        22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~----------~~--~~~~~~~~~Dv~d~~~v~   89 (266)
T 3grp_A           22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAA----------DL--GKDVFVFSANLSDRKSIK   89 (266)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HH--CSSEEEEECCTTSHHHHH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------Hh--CCceEEEEeecCCHHHHH
Confidence            34567788888865 899999999999999999999998765544322          11  223444433  2344555


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .++   +++.+...+=.++||.+..
T Consensus        90 ~~~---~~~~~~~g~iD~lvnnAg~  111 (266)
T 3grp_A           90 QLA---EVAEREMEGIDILVNNAGI  111 (266)
T ss_dssp             HHH---HHHHHHHTSCCEEEECCCC
T ss_pred             HHH---HHHHHHcCCCCEEEECCCC
Confidence            555   4444444444567776543

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.99  E-value=0.015  Score=51.26  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.+++|.|.|. |.||..+++.|.+.|++|++.+|+++..+.+.+.       +.+.  ..++.++.+  .+...++.+
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------l~~~--~~~~~~~~~Dl~~~~~v~~~   98 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGL--GAKVHTFVVDCSNREDIYSS   98 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHH-------HHhc--CCeEEEEEeeCCCHHHHHHH
Confidence            466788989865 8999999999999999999999987654433210       1110  223444433  233445555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||++.
T Consensus        99 ~---~~~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A           99 A---KKVKAEIGDVSILVNNAG  117 (272)
T ss_dssp             H---HHHHHHTCCCSEEEECCC
T ss_pred             H---HHHHHHCCCCcEEEECCC
Confidence            5   444444444467777754

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.98  E-value=0.011  Score=53.85  Aligned_cols=29  Identities=17%  Similarity=0.354  Sum_probs=24.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---CCcEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA---GCDVTVW   99 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~---g~~V~~~   99 (358)
                      .||||+|+|++|+.+.+.|...   .++|...
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivai   32 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAI   32 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            3799999999999999998765   4676644

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.97  E-value=0.0075  Score=55.23  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHC-CC-cEEEEcCCccchhhHHh----CCCc-------cCCCHHHHhhcCCEEEE
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLIS----LGAK-------YQPSPDEVAASCDVTFA  132 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~-g~-~V~~~~~~~~~~~~~~~----~g~~-------~~~~~~~~~~~aDivi~  132 (358)
                      .+.+|+|.|.| .|.+|+.+++.|.+. |+ +|++++|++.+...+.+    .++.       -..++.++++.+|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            35678999998 599999999999998 97 99999998765543322    1111       11234466778999998


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      +..
T Consensus        98 ~Aa  100 (344)
T 2gn4_A           98 AAA  100 (344)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.97  E-value=0.0097  Score=52.09  Aligned_cols=87  Identities=6%  Similarity=-0.008  Sum_probs=58.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|-|. +.||+++|+.|++.|.+|.+++|+.++.+...+       .+.+.  ..+++.+.+  .+..+++.+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~-------~i~~~--g~~~~~~~~Dvt~~~~v~~~   74 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQ-------ELRGM--GKEVLGVKADVSKKKDVEEF   74 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHT--TCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-------HHHhc--CCcEEEEEccCCCHHHHHHH
Confidence            566777766655 789999999999999999999999876655433       11111  233444433  355677777


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||.+.
T Consensus        75 ~---~~~~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           75 V---RRTFETYSRIDVLCNNAG   93 (254)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCc
Confidence            7   556565555577888754

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.97  E-value=0.012  Score=55.27  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEc--------CCc---cchhhHHh---------------CCCccCCCH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN--------RTK---SKCDPLIS---------------LGAKYQPSP  120 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~--------~~~---~~~~~~~~---------------~g~~~~~~~  120 (358)
                      ++.++||.|=|+|++|...|+.|.+.|.+|+.++        .+.   +++..+.+               .+.... +.
T Consensus       232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~~  310 (450)
T 4fcc_A          232 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-EG  310 (450)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-ET
T ss_pred             CcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-cC
Confidence            5788999999999999999999999999987543        211   11111211               122222 11


Q ss_pred             HHH-hhcCCEEEEeeCChhhHhhhhcccccccccCCCC--CEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          121 DEV-AASCDVTFAMLADPESAMDVACGKHGAASGMGPG--KGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       121 ~~~-~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~--~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +++ --+|||++=|.-     .+.+  +.+-.+.++.+  +++++-++.+. +.+ -.+.|.++|+.|+.
T Consensus       311 ~~i~~~~~DI~iPcAl-----~~~I--~~~~a~~L~a~g~k~IaEgAN~p~-t~e-A~~iL~~rGIl~~P  371 (450)
T 4fcc_A          311 QQPWSVPVDIALPCAT-----QNEL--DVDAAHQLIANGVKAVAEGANMPT-TIE-ATELFQQAGVLFAP  371 (450)
T ss_dssp             CCGGGSCCSEEEECSC-----TTCB--CHHHHHHHHHTTCCEEECCSSSCB-CHH-HHHHHHHTTCEEEC
T ss_pred             cccccCCccEEeeccc-----cccc--cHHHHHHHHhcCceEEecCCCCCC-CHH-HHHHHHHCCCEEEC
Confidence            222 235898877762     2334  23333344332  45666555544 333 34677888877763

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.96  E-value=0.013  Score=51.47  Aligned_cols=86  Identities=12%  Similarity=0.117  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.++++-|.|. |.||.++++.|++.|++|++.+|+.++.+.+.+.       +.+  ...++.++.+  .+..+++.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~   78 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ-------VTD--TGRRALSVGTDITDDAQVAHL   78 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEcCCCCHHHHHHH
Confidence            356678888876 7899999999999999999999987765544321       111  1234444443  234556666


Q ss_pred             hcccccccccCCCCCEEEEcc
Q 018303          144 ACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      +   +++.+...+=.++||.+
T Consensus        79 ~---~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           79 V---DETMKAYGRVDVVINNA   96 (264)
T ss_dssp             H---HHHHHHTSCCSEEEECC
T ss_pred             H---HHHHHHcCCCcEEEECC
Confidence            6   55555554556777775

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.96  E-value=0.0075  Score=55.20  Aligned_cols=46  Identities=24%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga  205 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA  205 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence            4679999998 999999999999999999999998888776665553

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.95  E-value=0.017  Score=50.65  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=35.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|.+.+|++++.+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   52 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA   52 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            456678888864 899999999999999999999998765443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.95  E-value=0.011  Score=52.98  Aligned_cols=114  Identities=8%  Similarity=-0.057  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChh--------
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE--------  138 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~--------  138 (358)
                      ++++|+|.|+|.........+.|.+.|++|.+..-+.+.   ....|.....++.+.++++|+|+...|...        
T Consensus         4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~---~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~   80 (300)
T 2rir_A            4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLD---HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTV   80 (300)
T ss_dssp             CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSS---CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBS
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc---cccccceeccchHHHHhcCCEEEeccccccCCcccccc
Confidence            466789999999999999999999999999877532211   112234445566777889999987443211        


Q ss_pred             --hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          139 --SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       139 --~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                        ..+..+  ++++++.+++.++|+ ++-    +..++.+++.++++.+...|-
T Consensus        81 ~a~~~~~~--~~~~l~~~~~l~~i~-~g~----~~~d~~~~~~~~gi~v~~~~~  127 (300)
T 2rir_A           81 FSNEEVVL--KQDHLDRTPAHCVIF-SGI----SNAYLENIAAQAKRKLVKLFE  127 (300)
T ss_dssp             SCSSCEEC--CHHHHHTSCTTCEEE-ESS----CCHHHHHHHHHTTCCEEEGGG
T ss_pred             cccCCccc--hHHHHhhcCCCCEEE-Eec----CCHHHHHHHHHCCCEEEeecC
Confidence              111112  244556778888877 222    333545677778887776653

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=95.95  E-value=0.016  Score=52.93  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCcEEE--EcCCccchhhHHh-CCCccC-----CC--------------HHHHh--
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKA-GCDVTV--WNRTKSKCDPLIS-LGAKYQ-----PS--------------PDEVA--  124 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~--~~~~~~~~~~~~~-~g~~~~-----~~--------------~~~~~--  124 (358)
                      ++|+|+| +|.||+.....+... +++|.+  .+++.+....... .+...+     .+              +.+++  
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~   83 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEA   83 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcC
Confidence            5899999 699999999999887 466664  5677665544332 232221     11              24555  


Q ss_pred             hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh-HHHHHHHHHHhcCCeEec
Q 018303          125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFLE  187 (358)
Q Consensus       125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~~~~~~~  187 (358)
                      .++|+|+.+++....+...+       ..++.|+.|.-..-...+ .-+.+.+..++.+..++.
T Consensus        84 ~~~D~Vv~AivG~aGL~ptl-------aAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~llP  140 (376)
T 3a06_A           84 LKPDITMVAVSGFSGLRAVL-------ASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIP  140 (376)
T ss_dssp             HCCSEEEECCCSTTHHHHHH-------HHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHH-------HHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEEE
Confidence            46999999999877777776       345667766643222222 223445556666666554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.95  E-value=0.011  Score=53.92  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=59.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCccC-----CCHHHHhh-----cCCEEEEeeCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQ-----PSPDEVAA-----SCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~-----~~~~~~~~-----~aDivi~~vp~  136 (358)
                      .+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+ .+.|....     .+..+.+.     ..|+|+.++. 
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-  227 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG-  227 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC-
Confidence            4679999998 9999999999999999999999998887776 55554321     12222221     3677777764 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ....       ...+..++++..++.++.
T Consensus       228 ~~~~-------~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          228 GEIL-------DTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HHHH-------HHHHTTEEEEEEEEECCC
T ss_pred             cchH-------HHHHHHHhhCCEEEEEee
Confidence            3222       223345566666666543

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=95.95  E-value=0.028  Score=50.26  Aligned_cols=65  Identities=18%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+.+.+|+++|-|   ++..+++..+..+|++|.++.+..-..+ ....|  ...+++|+++++|+|..-.
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~g--~~~d~~eav~~aDvvyt~~  211 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE-ENTFG--TYVSMDEAVESSDVVMLLR  211 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT-TCSSC--EECCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcc-hhhcC--ccCCHHHHhCCCCEEEecc
Confidence            4678899999985   6999999999999999999887432221 11122  4568999999999998754

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.95  E-value=0.014  Score=50.86  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .+.++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+.+.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   50 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVA   50 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            456778888876 78999999999999999999999887655543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.94  E-value=0.014  Score=51.76  Aligned_cols=40  Identities=18%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             CcCCCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           64 SAEDELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        64 ~~~~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      +|..+.++++.|.|. |.||..+|+.|++.|++|++++|+.
T Consensus         4 ~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~   44 (287)
T 3pxx_A            4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICH   44 (287)
T ss_dssp             SCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccc
Confidence            344677888888875 7999999999999999999999874

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.93  E-value=0.005  Score=53.63  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      ++|.|.|. |.||+.+++.|++.|++|++.+|++++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~   38 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV   38 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            46777765 8999999999999999999999987653

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.93  E-value=0.0091  Score=54.20  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHh-CCC-------ccCCCHHHHhhc--CCEEEEee
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLIS-LGA-------KYQPSPDEVAAS--CDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~-~g~-------~~~~~~~~~~~~--aDivi~~v  134 (358)
                      .+.+|+|.|.| .|.+|+.+++.|.+.|++|++.+|+..... .+.+ .++       .-..++.++++.  +|+||.+.
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            45678999997 599999999999999999999998754321 1111 011       111123455666  88888776


Q ss_pred             C
Q 018303          135 A  135 (358)
Q Consensus       135 p  135 (358)
                      .
T Consensus        98 ~   98 (333)
T 2q1w_A           98 A   98 (333)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.93  E-value=0.024  Score=51.41  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEcCC--hhHHHHHHHHHHCCCcEEEEcCCccch-----hhHH----hCC--CccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+.+.+|+++|=|  +++.+++..++.+|++|.++.+..-..     +.+.    +.|  +..+.+++++++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            3566899999986  999999999999999999988743211     1111    345  45578999999999999986


Q ss_pred             eCC--------hhhHhhhh--cc-cccccccC-CCCCEEEEccCC
Q 018303          134 LAD--------PESAMDVA--CG-KHGAASGM-GPGKGYVDVSTV  166 (358)
Q Consensus       134 vp~--------~~~~~~~~--~~-~~~~~~~l-~~~~~vi~~s~~  166 (358)
                      +--        ..+-...+  |+ +.++++.. +++.+|+.|.-.
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  276 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCC
Confidence            531        11110111  11 46666777 788888888443

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.92  E-value=0.035  Score=48.94  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      ++.+++|.|||.|.+|..-++.|.+.|++|++++++.
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            6788999999999999999999999999999998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.0089  Score=52.63  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhc
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVAC  145 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~  145 (358)
                      .++++.|.|. |.||+++|+.|++.|++|++.+|+.++.+.+.+.       +.+.  ..++.++.+  .+..+++.++ 
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~--~~~~~~~~~Dv~d~~~v~~~~-   72 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE-------IRDA--GGTALAQVLDVTDRHSVAAFA-   72 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHT--TCEEEEEECCTTCHHHHHHHH-
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEcCCCCHHHHHHHH-
Confidence            3467777766 8999999999999999999999987765544321       1111  123333333  2344555555 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                        +++.+...+=.++||++.
T Consensus        73 --~~~~~~~g~iD~lVnnAG   90 (264)
T 3tfo_A           73 --QAAVDTWGRIDVLVNNAG   90 (264)
T ss_dssp             --HHHHHHHSCCCEEEECCC
T ss_pred             --HHHHHHcCCCCEEEECCC
Confidence              444444444456776643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.92  E-value=0.011  Score=53.00  Aligned_cols=88  Identities=20%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++.++++-|.|. |.||..+++.|++.|++|++.+|+.++.+...+.       +.+. ...++.++.+  .+..+++.+
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dv~d~~~v~~~  109 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAE-------LGEL-GAGNVIGVRLDVSDPGSCADA  109 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HTTS-SSSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhh-CCCcEEEEEEeCCCHHHHHHH
Confidence            566778877765 8999999999999999999999988766544321       0000 0123444433  234455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus       110 ~---~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A          110 A---RTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCC
Confidence            5   444444444466777644

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.91  E-value=0.0082  Score=55.29  Aligned_cols=45  Identities=22%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             CeEEEEcCChhHHHH-HHHH-HHCCCc-EEEEcCCcc---chhhHHhCCCc
Q 018303           71 GRIGFLGMGIMGTPM-AQNL-LKAGCD-VTVWNRTKS---KCDPLISLGAK  115 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~-a~~l-~~~g~~-V~~~~~~~~---~~~~~~~~g~~  115 (358)
                      .+|.|+|+|.+|... ++.+ +..|.+ |++.+++++   +.+.+.+.|+.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~  224 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT  224 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence            799999999999999 8888 888987 999999887   77766665543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.91  E-value=0.02  Score=54.34  Aligned_cols=47  Identities=17%  Similarity=0.116  Sum_probs=40.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK  115 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~  115 (358)
                      .+.+|.|+|+ |.+|...++.++..|.+|++.++++++.+.+.+.|..
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~  267 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD  267 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC
Confidence            4678999998 9999999999999999999998988887777666653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.90  E-value=0.01  Score=54.13  Aligned_cols=46  Identities=20%  Similarity=0.187  Sum_probs=39.1

Q ss_pred             CCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+| .+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga  190 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA  190 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC
Confidence            45799999997 99999999999999999999999888776665443

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.89  E-value=0.025  Score=51.35  Aligned_cols=99  Identities=13%  Similarity=0.061  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCC--hhHHHHHHHHHHCCCcEEEEcCCccch-----hhHH----hCC--CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLI----SLG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~----~~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +.+.+|+++|=|  +++.+++..++.+|++|.++.+..-..     +.+.    +.|  +..+.+++++++++|+|..-+
T Consensus       153 l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (335)
T 1dxh_A          153 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV  232 (335)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             cCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCC
Confidence            566899999996  999999999999999999988743211     1111    335  455789999999999999865


Q ss_pred             CC--------hhhHhhhh--cc-cccccccC-CCCCEEEEccCC
Q 018303          135 AD--------PESAMDVA--CG-KHGAASGM-GPGKGYVDVSTV  166 (358)
Q Consensus       135 p~--------~~~~~~~~--~~-~~~~~~~l-~~~~~vi~~s~~  166 (358)
                      --        ..+-...+  |+ +.++++.. +++.+|+.|.-.
T Consensus       233 w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (335)
T 1dxh_A          233 WVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  276 (335)
T ss_dssp             CSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             ccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCC
Confidence            31        01110111  11 46666777 788888888543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.89  E-value=0.025  Score=48.69  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhcc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~~  146 (358)
                      ++++-|.|. |.||+++++.|.+.|++|.+.+|+.++.+...+.          + .. .+.++.+  .+..+++.++  
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~-~~-~~~~~~~D~~~~~~v~~~~--   68 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL----------L-GN-AVIGIVADLAHHEDVDVAF--   68 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------H-GG-GEEEEECCTTSHHHHHHHH--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h-cC-CceEEECCCCCHHHHHHHH--
Confidence            457888875 8999999999999999999999987665543321          1 11 2333333  2344555555  


Q ss_pred             cccccccCCCCCEEEEccCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +++.+...+=.++||.+..
T Consensus        69 -~~~~~~~g~id~lvnnAg~   87 (235)
T 3l6e_A           69 -AAAVEWGGLPELVLHCAGT   87 (235)
T ss_dssp             -HHHHHHHCSCSEEEEECCC
T ss_pred             -HHHHHhcCCCcEEEECCCC
Confidence             4444444444567776543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.88  E-value=0.017  Score=50.51  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|.+.+|++++.+.
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   48 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND   48 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            355678888865 899999999999999999999998765443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.87  E-value=0.022  Score=54.18  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeC
Q 018303           67 DELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        67 ~~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+.+++|+|+|+-          .=...+++.|.+.|.+|.+||+.... ........+....++.++++++|.|+++++
T Consensus       315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~  394 (450)
T 3gg2_A          315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE  394 (450)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC
T ss_pred             cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC
Confidence            4577899999984          34788999999999999999987532 111111125667788999999999999996


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .+ +.+.+=+  +.+...|+ +.+|+|.-+..
T Consensus       395 ~~-~f~~~~~--~~~~~~~~-~~~i~D~r~~~  422 (450)
T 3gg2_A          395 WK-EFRMPDW--SALSQAMA-ASLVIDGRNVY  422 (450)
T ss_dssp             CG-GGSSCCH--HHHHHHSS-SCEEEESSCCC
T ss_pred             CH-HHhhcCH--HHHHHhcC-CCEEEECCCCC
Confidence            54 3333210  23333443 66899976554

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=95.87  E-value=0.019  Score=51.89  Aligned_cols=65  Identities=18%  Similarity=0.245  Sum_probs=45.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcC--Cccchhh----HHhC------CCccC--C-CHHHHhhcCCEEEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNR--TKSKCDP----LISL------GAKYQ--P-SPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~--~~~~~~~----~~~~------g~~~~--~-~~~~~~~~aDivi~  132 (358)
                      |||.|+|+ |.+|+.++..|...|+  ++.++|+  +.++.+.    +.+.      .....  + ++.++++++|+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            58999999 9999999999988774  5888998  5543321    1110      11211  1 24778999999999


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      +.-
T Consensus        81 ~Ag   83 (313)
T 1hye_A           81 TSG   83 (313)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            873

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.85  E-value=0.016  Score=50.88  Aligned_cols=84  Identities=13%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|++.+|++++.+...+. +.           .++.++.+  .+..+++.+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~-----------~~~~~~~~D~~~~~~v~~~   70 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-LE-----------AEAIAVVADVSDPKAVEAV   70 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-CC-----------SSEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hc-----------CceEEEEcCCCCHHHHHHH
Confidence            355678888865 8999999999999999999999987665544321 10           22333333  233455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||++.
T Consensus        71 ~---~~~~~~~g~iD~lvnnAg   89 (263)
T 2a4k_A           71 F---AEALEEFGRLHGVAHFAG   89 (263)
T ss_dssp             H---HHHHHHHSCCCEEEEGGG
T ss_pred             H---HHHHHHcCCCcEEEECCC
Confidence            5   444444444466777653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.84  E-value=0.023  Score=50.14  Aligned_cols=88  Identities=11%  Similarity=-0.030  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcC---ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      .+.++++.|.|.   |.||..+++.|.+.|++|++.+|+.+..+.+.+        +.+......++..-+.+..+++.+
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~--------l~~~~~~~~~~~~D~~~~~~v~~~   74 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSL   74 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHHhcCCcEEEEcCCCCHHHHHHH
Confidence            355678999987   699999999999999999999998651111111        111111123333333344556666


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus        75 ~---~~~~~~~g~id~lv~nAg   93 (275)
T 2pd4_A           75 Y---NSVKKDLGSLDFIVHSVA   93 (275)
T ss_dssp             H---HHHHHHTSCEEEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCc
Confidence            6   444444433356777654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.84  E-value=0.011  Score=51.60  Aligned_cols=42  Identities=19%  Similarity=0.159  Sum_probs=34.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~  108 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|++.+|++++.+.
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   53 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR   53 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            455678888865 899999999999999999999998765443

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.84  E-value=0.011  Score=54.11  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-hCCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-SLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~  114 (358)
                      .+++|.|+|+ |.+|..+++.++..|.+|++.++++++.+.+. +.|.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~  202 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF  202 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            4578999997 99999999999999999999999887776665 3443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.83  E-value=0.022  Score=49.66  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      .+.++++.|.|. |.||+.+++.|.+.|++|.+.+|++++.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   58 (253)
T 2nm0_A           18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP   58 (253)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh
Confidence            456678888865 8999999999999999999999976543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.83  E-value=0.015  Score=50.75  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=36.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .+.++++-|.|. |.||.++++.|++.|++|++.+|+.++.+.+.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV   48 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            345678888865 78999999999999999999999887765543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.83  E-value=0.0075  Score=55.67  Aligned_cols=46  Identities=26%  Similarity=0.146  Sum_probs=38.9

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+| .|.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga  209 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC  209 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC
Confidence            457999999 7999999999999999999999998877666655443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.81  E-value=0.16  Score=48.40  Aligned_cols=37  Identities=27%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      ++++++|.|||.|.+|..-++.|.+.|.+|++++++.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            5778899999999999999999999999999999753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.81  E-value=0.0092  Score=54.70  Aligned_cols=89  Identities=16%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCC-hhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCCCccC-----CCH----HHHh--hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMG-IMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQ-----PSP----DEVA--ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G-~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~----~~~~--~~aDivi~~vp  135 (358)
                      .+.+|.|+|+| .+|...++.++.. |.+|++.++++++.+.+.+.|....     .+.    .++.  ...|+|+.++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            45789999999 9999999999998 9999999998877766655443211     111    1222  24677777775


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEcc
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      .+.....       .+..++++..++.++
T Consensus       250 ~~~~~~~-------~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          250 SEKTLSV-------YPKALAKQGKYVMVG  271 (347)
T ss_dssp             CHHHHTT-------GGGGEEEEEEEEECC
T ss_pred             CHHHHHH-------HHHHHhcCCEEEEEC
Confidence            3222222       234455666666554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.80  E-value=0.0084  Score=52.41  Aligned_cols=87  Identities=15%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+...+.       +.+  ...++.++.+  .+..+++.+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~   73 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLE-------IEQ--FPGQILTVQMDVRNTDDIQKM   73 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HCC--STTCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHH
Confidence            456678888865 8999999999999999999999987765544321       000  0123444433  234455555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||++.
T Consensus        74 ~---~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           74 I---EQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCC
Confidence            5   444444444466777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	1e-39
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	6e-36
d1vpda1	133	a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge	1e-28
d3cuma1	134	a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge	1e-26
d2cvza2	156	c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase	2e-26
d2cvza1	132	a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge	4e-26
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	2e-23
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	1e-22
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	2e-22
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	7e-19
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	5e-10
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	1e-09
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	4e-09
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	1e-07
d2ahra2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	2e-07
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	3e-07
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	1e-06
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	2e-06
d1yqga2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	2e-05
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	1e-04
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	0.001
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	0.003

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  135 bits (341), Expect = 1e-39
 Identities = 57/160 (35%), Positives = 90/160 (56%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++GF+G+GIMG PM++NLLKAG  + V +R       +I+ GA+   +   +A  CDV  
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            ML +     +VA G++G   G  PG   +D+S++    S+ I+  +KA G   L+APVS
Sbjct: 62  TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS 121

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 231
           G +  A DG L  +  GDK++++    L+  M  S  + G
Sbjct: 122 GGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  126 bits (317), Expect = 6e-36
 Identities = 51/160 (31%), Positives = 81/160 (50%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I F+G+G MG PMA NLLKAG  + V++  +S  D L++ GA    S  +     DV  
Sbjct: 3   QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 62

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           +ML   +    +     G  + + PG   ++ ST+   +++ I+   +  G + L+APVS
Sbjct: 63  SMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS 122

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 231
           G    A  G L F+  GD        PL + MG++ F+ G
Sbjct: 123 GGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 31/124 (25%), Positives = 60/124 (48%)

Query: 232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS 291
           D+G G   KL   +I+   +A  SE L  + K G++P+++ + +  G   + +   K P 
Sbjct: 1   DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60

Query: 292 MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 351
           +++  +   F +    KDL  AL  +  V    P+ AA  E+ +  ++ G  ++D SA+ 
Sbjct: 61  VMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALA 120

Query: 352 EALK 355
              +
Sbjct: 121 CYYE 124

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 233 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-------PMY 285
            G G   K+  N ++  +M   +E +      GL+  VL E++ + +          P  
Sbjct: 2   DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61

Query: 286 SLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 345
            +   +     Y   F  +   KDL LA   A++ + STP+ + A  LY++    G ++ 
Sbjct: 62  GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121

Query: 346 DFSAVIEALKAKK 358
           DFS V +     +
Sbjct: 122 DFSVVQKLFDPTQ 134

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (250), Expect = 2e-26
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           ++ F+G+G MG PMA +L +      VWNRT  K               + VA +  +  
Sbjct: 2   KVAFIGLGAMGYPMAGHLARRF-PTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFT 60

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +     +  +V          +  G  +VD ++ + + S+ +   ++  G ++L+APVS
Sbjct: 61  CL----PTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS 116

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 231
           G    AE G L  +  G +     V P L    K   ++G
Sbjct: 117 GGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVG 155

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 99.4 bits (247), Expect = 4e-26
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 1/124 (0%)

Query: 233 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV-SQGAISAPMYSLKGPS 291
           VG G A+K + N ++   +    EGLL   K G+     +EV+ +    S    +L    
Sbjct: 1   VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR 60

Query: 292 MIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVI 351
           ++   +P  F L    KDL +A+G+ +     +P+   A E+Y++AK     D D    +
Sbjct: 61  VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEAL 120

Query: 352 EALK 355
             L+
Sbjct: 121 RLLE 124

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 93.9 bits (232), Expect = 2e-23
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 13/177 (7%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            +G +G+G+MG  +A N+ + G  V V+NRT SK +  +   A    + +  A      F
Sbjct: 3   DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62

Query: 132 AMLADPESAM--------DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA 183
           A                                G   VD               ++A G 
Sbjct: 63  AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122

Query: 184 SFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK----SRFYLGDVGNG 236
            FL   +SG ++ A  G   F   G  S++  + P+++         R  +   G+G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFP-GGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 91.6 bits (226), Expect = 1e-22
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 6/159 (3%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
            I  +G+ +MG  +  N+   G  V  +NRT SK D  ++  AK        +    V+ 
Sbjct: 4   DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63

Query: 132 AMLADPESAMDVAC-----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186
                    +  A              +  G   +D    +   +      +K  G  F+
Sbjct: 64  LKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV 123

Query: 187 EAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 225
            + VSG +  A  G  +    G+K  +  +  +   +  
Sbjct: 124 GSGVSGGEDGARYGPSLMP-GGNKEAWPHIKAIFQGIAA 161

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 89.9 bits (222), Expect = 2e-22
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 12/161 (7%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           R+GF+G G +   +A  L   G +V      +S      +       + +E   SC V  
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
           + +    +             G      YVD++ +  +T ++ +  I+  G     A + 
Sbjct: 62  SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLIEKGGFVD--AAIM 113

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 232
           GS +       I  +  D          L+  G +    G 
Sbjct: 114 GSVRRKGADIRIIASGRDA----EEFMKLNRYGLNIEVRGR 150

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.4 bits (197), Expect = 7e-19
 Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 10/160 (6%)

Query: 73  IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 132
           + F+G G +     + L        + +R+  +   L  +      + ++      V F 
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61

Query: 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192
           +       +     K  A          V  S      S  I             +  S 
Sbjct: 62  I-------VPDRYIKTVANHLNLGDAVLVHCSGF---LSSEIFKKSGRASIHPNFSFSSL 111

Query: 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 232
            K      Q++F   GD+     V  + + +    F +  
Sbjct: 112 EKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.3 bits (132), Expect = 5e-10
 Identities = 17/158 (10%), Positives = 41/158 (25%), Gaps = 23/158 (14%)

Query: 71  GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 129
            +I  +G  G +G   A+ L  +G  +++ +R        I   A        +  + + 
Sbjct: 10  HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLET 69

Query: 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE 187
              +                    +       D+++V  +    +         G   + 
Sbjct: 70  IERLKPY-----------------LTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMF 112

Query: 188 APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 225
                S        ++         Y  +   + I G 
Sbjct: 113 GADIASMAKQV---VVRCDGRFPERYEWLLEQIQIWGA 147

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 12/167 (7%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IG +G+G++G  +A +L + G  +   +R +S C+  +      +   D          
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLS-LLQTAKI 60

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATGASFLEAPV 190
             L  P   +     K      + P     DV++V    ++  +       G   +    
Sbjct: 61  IFLCTPIQLILPTLEKLIPH--LSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTA 118

Query: 191 SGSKKPAEDGQ-------LIFLAAGDKSLYNTVAPLLDIMGKSRFYL 230
           +     AE+         L      D      +  +L+ +G  + YL
Sbjct: 119 AQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLG-VKIYL 164

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDV 129
            +  LG G +  P    L  +G  VTV  RT      L +    +          A+ D 
Sbjct: 4   SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA 63

Query: 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 173
             A      S +          S +   K  V  S V     +L
Sbjct: 64  EVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMEL 107

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 24/200 (12%), Positives = 56/200 (28%), Gaps = 19/200 (9%)

Query: 72  RIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 130
           R+  L G G +G  +A  L   G ++ V +R + K +   +   +            +  
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61

Query: 131 FAMLADPESAMDVACGKHGAASGM------------------GPGKGYVDVSTVDGDTSK 172
                     +        A                        G  Y    +     ++
Sbjct: 62  AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121

Query: 173 LINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 232
           ++      +    + A    +     D  +      D+S    ++ + +I G      G 
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181

Query: 233 VGNGAAMKLVVNMIMGSMMA 252
           + N   ++ +  +I+  M  
Sbjct: 182 LSNSRLVESLTPLILNIMRF 201

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 9/155 (5%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +IG +G+G M + + + L +   ++ +   +  +   +    A       +         
Sbjct: 2   KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 61

Query: 132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191
            +   P+    V    H     +    G             L    I     + +    +
Sbjct: 62  ILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSST 121

Query: 192 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 226
                     L   A   + L   V  L D  G +
Sbjct: 122 A---------LTGNALVSQELQARVRDLTDSFGST 147

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 4/117 (3%)

Query: 112 LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 171
           +G K      E     D+    L       D+       A  +  G       T+     
Sbjct: 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKF 183

Query: 172 KLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 228
             I   +     +   +   G     +    I      +   N +  +  I     F
Sbjct: 184 AKIFKDLGREDLNIT-SYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAF 239

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 113
               LG+G  G   A  L   G  V  W+    +   +   G
Sbjct: 3   TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG 44

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 21/62 (33%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +I  LG G +G      L K G +V  W R       +  +        + + A+     
Sbjct: 2   KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61

Query: 132 AM 133
           A 
Sbjct: 62  AT 63

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVT 130
            + FLG G M   +A  L+K G   + + NR   K + L         +      S DV 
Sbjct: 2   NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVL 61

Query: 131 FAMLADPESAMDVACGKHGAASGMGPGKGY 160
              +   +        +   A  +    G 
Sbjct: 62  ILAVKPQDMEAACKNIRTNGALVLSVAAGL 91

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 106
            +  LG G MG+ ++  L+  G +V +W       
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 131
           +    G G  GT +A  L K   +V VW+  + +   +               AS     
Sbjct: 9   KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT 68

Query: 132 AMLADPESAMDV 143
           + +    +  ++
Sbjct: 69  SDVEKAYNGAEI 80

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 72  RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 106
            +  +G G+MG  +AQ     G  V + ++T+   
Sbjct: 6   HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.96
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.95
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.94
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.94
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.93
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.93
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.93
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.89
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.87
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.86
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.83
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.83
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.8
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.8
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.79
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.73
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.72
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.7
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.66
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.54
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.52
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.48
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.47
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.43
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.43
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.39
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.26
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.15
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.94
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.93
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.73
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.6
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.54
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.53
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.51
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.51
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.51
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.5
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.49
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.49
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.46
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.45
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.37
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.31
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.26
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.26
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.24
d1mv8a1	98	GDP-mannose 6-dehydrogenase, middle domain {Pseudo	98.23
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.21
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.18
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.13
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.08
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.08
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.07
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.05
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.03
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	98.03
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.03
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.02
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.01
d1dlja1	98	UDP-glucose dehydrogenase (UDPGDH), middle domain	97.94
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.94
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.94
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.94
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.92
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.9
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.89
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.87
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.87
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.86
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.86
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.83
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.82
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.81
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.79
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.78
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.75
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.74
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.74
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.72
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.71
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.67
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.66
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.63
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.63
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.61
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.53
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.52
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.5
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.5
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.5
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.49
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.49
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.48
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.46
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.44
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.4
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.38
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.35
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.34
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.31
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.27
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.23
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.19
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.15
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.15
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.15
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.09
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	97.08
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.06
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.05
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	97.04
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.02
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.94
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	96.92
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.91
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	96.84
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.81
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.75
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.75
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.74
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.72
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.69
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.67
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.62
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.61
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.59
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.56
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.56
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.53
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.53
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.53
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.51
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.51
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.4
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.4
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.37
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.36
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.35
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.33
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.28
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.28
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.26
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.23
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.23
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.22
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.16
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.15
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	96.1
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.1
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.09
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.08
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.05
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.04
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.04
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.04
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.03
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.02
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.01
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	95.99
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.99
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.98
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.98
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.91
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.91
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.91
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.89
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.88
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.84
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	95.78
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.74
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.72
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.67
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.66
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.65
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.64
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.6
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.59
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.58
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.55
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.52
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.5
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.47
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.44
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.43
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.41
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.4
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.37
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.35
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.34
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.32
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.28
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.26
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.24
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.22
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.21
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.21
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.2
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.18
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.17
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.17
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.16
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.13
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.04
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.97
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.95
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.9
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.88
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.82
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.76
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	94.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.63
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	94.59
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.57
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.56
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.56
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.52
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.5
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.45
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.41
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.4
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.38
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.33
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.25
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.25
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	94.13
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	94.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.04
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.04
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.94
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.9
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.86
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.83
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.83
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.81
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.76
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.69
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.66
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.53
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	93.49
d1i36a1	112	Conserved hypothetical protein MTH1747 {Archaeon M	93.46
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.41
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.39
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	93.38
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.28
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.25
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.22
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.1
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.08
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.99
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.91
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.88
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	92.71
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	92.68
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.55
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.52
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.42
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.27
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.27
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.02
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.86
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	91.65
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.64
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	91.62
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	91.55
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	91.5
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.46
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.42
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.36
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.35
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.33
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	91.29
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	91.14
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.04
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	90.85
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.8
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.58
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	90.51
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.47
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	90.37
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.23
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.17
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.05
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.91
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.8
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.77
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.74
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.72
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.56
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.5
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	89.14
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.07
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.28
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.11
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	88.05
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.91
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.57
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	87.33
d2fzva1	233	Putative arsenical resistance protein {Shigella fl	87.27
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.25
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.23
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	87.17
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.1
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	87.05
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.72
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.48
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.45
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	86.39
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.17
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.05
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.99
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.95
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.94
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.51
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.45
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.21
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.11
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.0
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.81
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.6
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.55
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.48
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	84.24
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	84.05
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.05
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.01
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	83.56
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.92
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	82.8
d5nula_	138	Flavodoxin {Clostridium beijerinckii [TaxId: 1520]	82.36
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.3
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.26
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	81.98
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	81.89
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.73
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	81.58
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	81.44
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.14
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	81.05
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	80.66
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	80.66
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.46
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.36

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=6.8e-29  Score=204.45  Aligned_cols=161  Identities=35%  Similarity=0.620  Sum_probs=153.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |||||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.+.....++.|+++++|+|++|+|.+++++.++++...+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            68999999999999999999999999999999999999998888999999999999999999999999999998765678


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      +..+++|+++||+++..|.....+.+.+.+.+++|+++|+.+++..+..+++.++++|+++.+++++++|+.++.+++++
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~  160 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  160 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence            88999999999999999999999999999999999999999999988899999999999999999999999999999887


Q ss_pred             C
Q 018303          231 G  231 (358)
Q Consensus       231 g  231 (358)
                      |
T Consensus       161 G  161 (161)
T d1vpda2         161 G  161 (161)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.95  E-value=7.5e-30  Score=214.75  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=148.3

Q ss_pred             cCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCC
Q 018303           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      +|+||++++|+|++.|+++.+.+.+|+|.|..+....+.++            ++.+++|||||+|+||+.+|+++..+|
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~------------~l~g~tvgIiG~G~IG~~va~~l~~fg   70 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGE------------KLDNKTLGIYGFGSIGQALAKRAQGFD   70 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBC------------CCTTCEEEEECCSHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccc------------eecccceEEeecccchHHHHHHHHhhc
Confidence            57899999999999999999999999999976544333333            788999999999999999999999999


Q ss_pred             CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHH
Q 018303           94 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  173 (358)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  173 (358)
                      ++|.+||++..........+.....++++++++||+|++++|.+++|++++  +++.++.||+|+++||++||..+++++
T Consensus        71 ~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~a  148 (191)
T d1gdha1          71 MDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF--NKATIKSLPQGAIVVNTARGDLVDNEL  148 (191)
T ss_dssp             CEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhhee--cHHHhhCcCCccEEEecCCccchhhHH
Confidence            999999997665444444455666799999999999999999999999999  899999999999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCCC
Q 018303          174 INGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       174 l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      |.++|+++.+.....+++..+|
T Consensus       149 L~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1         149 VVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             HHHHHHHTSEEEEEESCCTTTT
T ss_pred             HHHHHHcCCceEEEEECCCCCC
Confidence            9999999988877778887765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=2.4e-27  Score=195.18  Aligned_cols=161  Identities=32%  Similarity=0.555  Sum_probs=151.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      ++|||||+|.||..+|++|.+.|++|.+|||++++.+.+...+.....++.|++..+|+|++|+|.+...+.++.....+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            58999999999999999999999999999999999888888888888899999999999999999998888887544567


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      ...+.+|+++||+++..|.....+.+.+.+.++.|+++|+.+++..+..+++.++++|+++.+++++++|+.++.+++++
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~  161 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHA  161 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEEC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 018303          231 G  231 (358)
Q Consensus       231 g  231 (358)
                      |
T Consensus       162 G  162 (162)
T d3cuma2         162 G  162 (162)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=2.3e-28  Score=204.77  Aligned_cols=163  Identities=16%  Similarity=0.150  Sum_probs=142.2

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      |+||++++++|++.|+++.+.+.++++.|......   +.            ++.++++||||+|+||+.+|+.+..+|+
T Consensus         4 sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~---~~------------~l~~k~vgiiG~G~IG~~va~~~~~fg~   68 (184)
T d1ygya1           4 SAAEHALALLLAASRQIPAADASLREHTWKRSSFS---GT------------EIFGKTVGVVGLGRIGQLVAQRIAAFGA   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCC---BC------------CCTTCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccc---cc------------cccceeeeeccccchhHHHHHHhhhccc
Confidence            78999999999999999999999999999743211   12            6788999999999999999999999999


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      +|.+||++..... ....++. ..+++|++++||+|++|+|.+++|++++  +++.+..|++++++||++||..+++++|
T Consensus        69 ~v~~~d~~~~~~~-~~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~li--n~~~l~~mk~~a~lIN~sRG~iVde~aL  144 (184)
T d1ygya1          69 YVVAYDPYVSPAR-AAQLGIE-LLSLDDLLARADFISVHLPKTPETAGLI--DKEALAKTKPGVIIVNAARGGLVDEAAL  144 (184)
T ss_dssp             EEEEECTTSCHHH-HHHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCB--CHHHHTTSCTTEEEEECSCTTSBCHHHH
T ss_pred             eEEeecCCCChhH-HhhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhh--hHHHHhhhCCCceEEEecchhhhhhHHH
Confidence            9999999765433 2333444 4589999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCCCc
Q 018303          175 NGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      .++++++.+.....+|+..+|.
T Consensus       145 ~~aL~~~~i~~a~lDV~~~EP~  166 (184)
T d1ygya1         145 ADAITGGHVRAAGLDVFATEPC  166 (184)
T ss_dssp             HHHHHTSSEEEEEESSCSSSSC
T ss_pred             HHHHhcCcEeEEEEeCCCCCCC
Confidence            9999999888777788877654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.94  E-value=2.3e-28  Score=205.76  Aligned_cols=171  Identities=12%  Similarity=0.037  Sum_probs=144.1

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      ++||++++++|++.|+++.+.+.+|+|.|........        .......++.+++|||||+|+||+.+|+.+..+|+
T Consensus         2 ~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~--------~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~   73 (193)
T d1mx3a1           2 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIR--------EVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF   73 (193)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHH--------HHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHcCCccccccccc--------ccccCceeeeCceEEEeccccccccceeeeecccc
Confidence            5788999999999999999999999999976421100        00111227889999999999999999999999999


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      +|.+||+.... +.....++....++++++++||+|++++|.+++|++++  +++.++.|++++++||++||..+++++|
T Consensus        74 ~v~~~d~~~~~-~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~aL  150 (193)
T d1mx3a1          74 NVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI--NDFTVKQMRQGAFLVNTARGGLVDEKAL  150 (193)
T ss_dssp             EEEEECTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB--SHHHHTTSCTTEEEEECSCTTSBCHHHH
T ss_pred             ceeeccCcccc-cchhhhccccccchhhccccCCEEEEeecccccchhhh--hHHHHhccCCCCeEEecCCceEEcHHHH
Confidence            99999997654 22333467777899999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCCCc
Q 018303          175 NGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      .++++++.+.....+++..+|.
T Consensus       151 ~~aL~~~~i~~a~lDV~~~EP~  172 (193)
T d1mx3a1         151 AQALKEGRIRGAALDVHESEPF  172 (193)
T ss_dssp             HHHHHHTSEEEEEESCCSSSSC
T ss_pred             HHHHHcCCceEEEEEcCCCCCC
Confidence            9999999887777777766653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.94  E-value=8.7e-28  Score=200.28  Aligned_cols=156  Identities=14%  Similarity=0.126  Sum_probs=137.2

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      +++|++++++|++.|+++.+.+.+++++|.......                .+.+++|||||+|+||+.+++.+..+|+
T Consensus         3 aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~----------------~l~gk~vgIiG~G~IG~~va~~l~~~g~   66 (181)
T d1qp8a1           3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIP----------------LIQGEKVAVLGLGEIGTRVGKILAALGA   66 (181)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCC----------------CCTTCEEEEESCSTHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCC----------------cccCceEEEeccccccccceeeeecccc
Confidence            678999999999999999999999999997543221                4778899999999999999999999999


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      +|.+|||++...      ......++++++++||+|++++|.+++|++++  +++.++.|++++++||++|+..+++++|
T Consensus        67 ~v~~~d~~~~~~------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li--~~~~l~~mk~~ailIN~~RG~ivd~~aL  138 (181)
T d1qp8a1          67 QVRGFSRTPKEG------PWRFTNSLEEALREARAAVCALPLNKHTRGLV--KYQHLALMAEDAVFVNVGRAEVLDRDGV  138 (181)
T ss_dssp             EEEEECSSCCCS------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCB--CHHHHTTSCTTCEEEECSCGGGBCHHHH
T ss_pred             cccccccccccc------ceeeeechhhhhhccchhhccccccccccccc--ccceeeeccccceEEeccccccccchhh
Confidence            999999986532      13345689999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCC
Q 018303          175 NGHIKATGASFLEAPVSGSK  194 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~  194 (358)
                      .++++++.+.....+++..+
T Consensus       139 ~~aL~~~~i~~aalDV~~~e  158 (181)
T d1qp8a1         139 LRILKERPQFIFASDVWWGR  158 (181)
T ss_dssp             HHHHHHCTTCEEEESCCTTT
T ss_pred             hhhcccCcEEEEEEecCCCC
Confidence            99999988876666666433

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.93  E-value=3.3e-28  Score=204.88  Aligned_cols=170  Identities=9%  Similarity=0.036  Sum_probs=146.5

Q ss_pred             cCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCC
Q 018303           14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      +++||++++++|++.|++..+.+.+++|.|.......             ...++.+++|||||+|+||+.+|++++.+|
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~-------------~~~~l~~~~vgiiG~G~IG~~va~~l~~fg   67 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS-------------HAYDLEAMHVGTVAAGRIGLAVLRRLAPFD   67 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHT-------------TCCCCTTCEEEEECCSHHHHHHHHHHGGGT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCC-------------cceeccccceeeccccccchhhhhhhhccC
Confidence            4789999999999999999999999999996422111             011678899999999999999999999999


Q ss_pred             CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHH
Q 018303           94 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL  173 (358)
Q Consensus        94 ~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~  173 (358)
                      ++|.+||+...........+.....++++++++||+|++++|.+++|++++  +++.++.|++|++|||++|+..+++++
T Consensus        68 ~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li--~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          68 VHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI--NDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             CEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB--SHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             ceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhh--HHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            999999997665555555567778899999999999999999999999999  899999999999999999999999999


Q ss_pred             HHHHHHhcCCeEecCCCCCCCCcCC
Q 018303          174 INGHIKATGASFLEAPVSGSKKPAE  198 (358)
Q Consensus       174 l~~~l~~~~~~~~~~~~~~~~~~~~  198 (358)
                      |.+++.++.+.....+++..+|...
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~  170 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPK  170 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCC
Confidence            9999999988777777776665443

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.93  E-value=2.1e-28  Score=207.49  Aligned_cols=164  Identities=13%  Similarity=0.079  Sum_probs=141.0

Q ss_pred             cccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHH
Q 018303           10 SHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNL   89 (358)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l   89 (358)
                      |++  |+||++++++|++.|+++.+.+.+++|.|.....+  .++            ++.+++|||||+|+||+.+|+++
T Consensus         1 Sp~--aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~--~~~------------~l~~ktvgIiG~G~IG~~va~~l   64 (199)
T d1dxya1           1 SPA--AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF--IGK------------ELGQQTVGVMGTGHIGQVAIKLF   64 (199)
T ss_dssp             CHH--HHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCC--CCC------------CGGGSEEEEECCSHHHHHHHHHH
T ss_pred             CCh--HHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCc--ccc------------cccceeeeeeecccccccccccc
Confidence            455  88999999999999999999999999999743322  112            67788999999999999999999


Q ss_pred             HHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh
Q 018303           90 LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus        90 ~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      +.+|++|++||+++.....   .... ..+++++++.||+|++++|.+++|++++  +++.+..|++++++||++||..+
T Consensus        65 ~~fg~~v~~~d~~~~~~~~---~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~vv  138 (199)
T d1dxya1          65 KGFGAKVIAYDPYPMKGDH---PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHII--NEAAFNLMKPGAIVINTARPNLI  138 (199)
T ss_dssp             HHTTCEEEEECSSCCSSCC---TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSB--CHHHHHHSCTTEEEEECSCTTSB
T ss_pred             cccceeeeccCCccchhhh---cchh-HHHHHHHHHhcccceeeecccccccccc--cHHHhhccCCceEEEecccHhhh
Confidence            9999999999997654221   1223 4589999999999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303          170 TSKLINGHIKATGASFLEAPVSGSKK  195 (358)
Q Consensus       170 ~~~~l~~~l~~~~~~~~~~~~~~~~~  195 (358)
                      ++++|.++|+++.+.....+|+..++
T Consensus       139 de~aL~~aL~~g~i~ga~lDV~~~EP  164 (199)
T d1dxya1         139 DTQAMLSNLKSGKLAGVGIDTYEYET  164 (199)
T ss_dssp             CHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             hhHHHHHHHhcCCcceEeccccCCCC
Confidence            99999999999988877777776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.93  E-value=1.3e-27  Score=201.67  Aligned_cols=163  Identities=15%  Similarity=0.090  Sum_probs=140.7

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      |+||+++++++++.|+++.+.+.++++.|.+....   ++            ++.+++|||||+|+||+.+|+++..+|+
T Consensus         3 aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~---g~------------el~gk~vgIiG~G~IG~~va~~l~~fg~   67 (197)
T d1j4aa1           3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTI---GR------------EVRDQVVGVVGTGHIGQVFMQIMEGFGA   67 (197)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCC---BC------------CGGGSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCc---Cc------------cccCCeEEEecccccchhHHHhHhhhcc
Confidence            67899999999999999999999999988643321   12            6788999999999999999999999999


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      +|.+||+.....  ....+. ...++++++++||+|++|+|.+++|++++  +++.+..|++++++||++||..+++++|
T Consensus        68 ~V~~~d~~~~~~--~~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li--~~~~l~~mk~~a~lIN~sRG~ivde~aL  142 (197)
T d1j4aa1          68 KVITYDIFRNPE--LEKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMI--NDESIAKMKQDVVIVNVSRGPLVDTDAV  142 (197)
T ss_dssp             EEEEECSSCCHH--HHHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCB--SHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             cccccCcccccc--ccccee-eeccccccccccccccccCCccccccccc--cHHHHhhhCCccEEEecCchhhhhhHHH
Confidence            999999875432  222333 45689999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCCCcC
Q 018303          175 NGHIKATGASFLEAPVSGSKKPA  197 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~~  197 (358)
                      .++++++.+.....+++..++..
T Consensus       143 ~~aL~~~~i~~a~lDV~~~Ep~~  165 (197)
T d1j4aa1         143 IRGLDSGKIFGYAMDVYEGEVGI  165 (197)
T ss_dssp             HHHHHHTSEEEEEESCCTTCTTT
T ss_pred             HHHHhcccchheeeeccccCCcc
Confidence            99999998887778888777544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.2e-27  Score=196.26  Aligned_cols=161  Identities=12%  Similarity=0.038  Sum_probs=134.6

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC   94 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~   94 (358)
                      |++|+++++++++.|+++.+.+.++++.|.+......               ++.+++|||||+|+||+.+|+++..+|+
T Consensus         4 aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~---------------~l~~~~vgiiG~G~IG~~va~~l~~fg~   68 (188)
T d1sc6a1           4 SVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF---------------EARGKKLGIIGYGHIGTQLGILAESLGM   68 (188)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC---------------CSTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccc---------------cccceEEEEeecccchhhhhhhcccccc
Confidence            7889999999999999999999999999975443221               6788999999999999999999999999


Q ss_pred             cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303           95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI  174 (358)
Q Consensus        95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l  174 (358)
                      +|.+||+......    .......+++|+++.||+|++|+|.+++|++++  +++.++.|++++++||++|+..+++++|
T Consensus        69 ~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li--~~~~l~~mk~~a~lIN~aRG~lvde~aL  142 (188)
T d1sc6a1          69 YVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM--GAKEISLMKPGSLLINASRGTVVDIPAL  142 (188)
T ss_dssp             EEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCB--CHHHHHHSCTTEEEEECSCSSSBCHHHH
T ss_pred             eEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhc--cHHHHhhCCCCCEEEEcCcHHhhhhHHH
Confidence            9999998754322    123445689999999999999999999999999  8999999999999999999999999999


Q ss_pred             HHHHHhcCCeEecCCCCCCCCc
Q 018303          175 NGHIKATGASFLEAPVSGSKKP  196 (358)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~  196 (358)
                      .++++++.+.....+++..+|.
T Consensus       143 ~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1         143 ADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             HHHHHTTSEEEEEEEC------
T ss_pred             HHHHHcCCceEEEEecCCCCCC
Confidence            9999998887777777766543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.89  E-value=3.3e-24  Score=178.74  Aligned_cols=154  Identities=17%  Similarity=0.220  Sum_probs=137.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC--------ccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA--------KYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      .+|||||+|+||..||++|.+.|++|.+|||++++.+.+.+.+.        ....++.+.+..+|++++++|.+..+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            47999999999999999999999999999999999888876543        2233455667789999999999999999


Q ss_pred             hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~  222 (358)
                      +.   .++.+.+++|+++||+++..+.+...+.+.+.+.++.|+++|+.+++..+..+. .++++|+++.+++++++|+.
T Consensus        83 v~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~  158 (176)
T d2pgda2          83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQG  158 (176)
T ss_dssp             HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHH
T ss_pred             HH---HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHH
Confidence            88   788899999999999999999999999999999999999999999998888887 67889999999999999999


Q ss_pred             hcCCeE
Q 018303          223 MGKSRF  228 (358)
Q Consensus       223 ~g~~~~  228 (358)
                      ++.++.
T Consensus       159 ~~~kv~  164 (176)
T d2pgda2         159 IAAKVG  164 (176)
T ss_dssp             HSCBCT
T ss_pred             HhcccC
Confidence            998763

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=3.2e-23  Score=169.18  Aligned_cols=155  Identities=28%  Similarity=0.427  Sum_probs=136.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccccc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA  151 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~  151 (358)
                      ||||||+|+||..+|++|.+.|+.+ +|+|++++...+.+.+...... .+.+.++|++++++|.+.++....   ..+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~---~~l~   76 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVA---EALY   76 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhh---cccc
Confidence            7999999999999999999988765 6788777766655543334434 456678999999999998888887   7888


Q ss_pred             ccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeC
Q 018303          152 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG  231 (358)
Q Consensus       152 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g  231 (358)
                      ..++++.++||+++..|.....+.+.+.+.++.|+++|++++++.+..+++.++++|+++.+++++++| .++.+++++|
T Consensus        77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2          77 PYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             TTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             ccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 5999999988


Q ss_pred             C
Q 018303          232 D  232 (358)
Q Consensus       232 ~  232 (358)
                      +
T Consensus       156 P  156 (156)
T d2cvza2         156 P  156 (156)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.86  E-value=1.7e-22  Score=168.59  Aligned_cols=161  Identities=20%  Similarity=0.324  Sum_probs=140.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------cCCCHHHH---hhcCCEEEEeeCChhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------YQPSPDEV---AASCDVTFAMLADPES  139 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------~~~~~~~~---~~~aDivi~~vp~~~~  139 (358)
                      |+|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+.+..        ...+.+++   +..++.++++++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            689999999999999999999999999999999998888765421        12333333   4578899999988888


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHH
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL  219 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~l  219 (358)
                      +..++   ......+.++++++|+++..+.+...+.+.+.+.++.|+++|+++++..+..+. .++++|+++.+++++++
T Consensus        82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pi  157 (178)
T d1pgja2          82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPI  157 (178)
T ss_dssp             HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHH
T ss_pred             hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHH
Confidence            88888   677788999999999999999999999999999999999999999988888887 67899999999999999


Q ss_pred             HHHhcCCeE----EeCCcCh
Q 018303          220 LDIMGKSRF----YLGDVGN  235 (358)
Q Consensus       220 l~~~g~~~~----~~g~~g~  235 (358)
                      |+.++.++.    ++|..|+
T Consensus       158 l~~~~~~~~~~~~~~g~~G~  177 (178)
T d1pgja2         158 VEAAAAKADDGRPCVTMNGS  177 (178)
T ss_dssp             HHHHSCBCTTSCBSCCCCCS
T ss_pred             HHHHhccccCCCCccCCCCC
Confidence            999998887    7887774

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=3e-20  Score=146.88  Aligned_cols=125  Identities=25%  Similarity=0.441  Sum_probs=122.0

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHH
Q 018303          232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR  311 (358)
Q Consensus       232 ~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  311 (358)
                      +.|+++..|+++|.+....+.+++|++.++++.|++++.+++++..+.+.|++++.+.|.+..++|.|+|++..+.||++
T Consensus         1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~   80 (133)
T d1vpda1           1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA   80 (133)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       312 ~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++.+++++.|+|+|+.+.+.++++.+.+.|.++.|+++++++|++
T Consensus        81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~  125 (133)
T d1vpda1          81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK  125 (133)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.83  E-value=3.7e-20  Score=152.31  Aligned_cols=156  Identities=15%  Similarity=0.211  Sum_probs=117.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC-ccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |||||||+|+||+.+|+.|++.|++|.+|||+++..+.+.+.+. ....+..+.+++||+||+++| +..++.++   ++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp-~~~~~~vl---~~   76 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP-IQLILPTL---EK   76 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC-HHHHHHHH---HH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc-Hhhhhhhh---hh
Confidence            68999999999999999999999999999999888887777664 233345577899999999997 67899999   88


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhc-CCeEecCCCCCCCCcCC----CCceEEEe---cCCHhHHHHHHHHHH
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAPVSGSKKPAE----DGQLIFLA---AGDKSLYNTVAPLLD  221 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~---~g~~~~~~~v~~ll~  221 (358)
                      +.+.++++.+|+++++........+.+...+. +.+.+..+...++....    .+...+++   +++++.++.++++++
T Consensus        77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~  156 (165)
T d2f1ka2          77 LIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLE  156 (165)
T ss_dssp             HGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHG
T ss_pred             hhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            88999999999999988776665555443221 22333333333322211    23333443   468999999999999


Q ss_pred             HhcCCeEEe
Q 018303          222 IMGKSRFYL  230 (358)
Q Consensus       222 ~~g~~~~~~  230 (358)
                      .+|.++++|
T Consensus       157 ~lG~~v~~c  165 (165)
T d2f1ka2         157 PLGVKIYLC  165 (165)
T ss_dssp             GGTCEEEEC
T ss_pred             HhCCEEEeC
Confidence            999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=3.6e-20  Score=150.21  Aligned_cols=150  Identities=21%  Similarity=0.281  Sum_probs=118.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA  150 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~  150 (358)
                      |||||||+|+||+.+|+.|.+.|++|.+|++++.+.......+.....+++|++++||+|++|+|.+ +...++   .+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~-~~~~~~---~~~   76 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPG-VALGAA---RRA   76 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGG-GHHHHH---HHH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCc-hHHHHH---Hhh
Confidence            6899999999999999999999999999998877666555555555678899999999999999854 455555   334


Q ss_pred             cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      ...  .+.++|++++..+...+.+.+.+++.  .|+++|+++.++....+...++.+++.+.++    .|+.+|.++.++
T Consensus        77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~~~  148 (152)
T d1i36a2          77 GRH--VRGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVR  148 (152)
T ss_dssp             HTT--CCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEEEC
T ss_pred             ccc--CCceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeeeEc
Confidence            333  46899999999999999998887644  5899999998877777776655555554443    367889988888


Q ss_pred             CC
Q 018303          231 GD  232 (358)
Q Consensus       231 g~  232 (358)
                      |+
T Consensus       149 G~  150 (152)
T d1i36a2         149 GR  150 (152)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.1e-19  Score=140.83  Aligned_cols=124  Identities=26%  Similarity=0.385  Sum_probs=119.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-ccccCCCCCCCchhhHHHHHH
Q 018303          233 VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKDLR  311 (358)
Q Consensus       233 ~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~  311 (358)
                      .|+++..|+++|.+....+.+++|++.++++.|+|++.++++++.+.+.|+.+..+.| .+..++|.++|++..+.||++
T Consensus         1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~   80 (132)
T d2cvza1           1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG   80 (132)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence            3789999999999999999999999999999999999999999999999999998877 578899999999999999999


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       312 ~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      ++.+++++.|+|+|+.+++.++++.+.+.|+++.|+++++++|++
T Consensus        81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~  125 (132)
T d2cvza1          81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER  125 (132)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.79  E-value=7.7e-19  Score=138.90  Aligned_cols=126  Identities=24%  Similarity=0.335  Sum_probs=117.9

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccc-------cccccCCCCCCCchh
Q 018303          232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLK  304 (358)
Q Consensus       232 ~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~  304 (358)
                      +.|+++..|+++|.+.+..+.+++|++.++++.|+|++.+++++..+.+.|++++.+.       ..+..+++.++|++.
T Consensus         1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   80 (134)
T d3cuma1           1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ   80 (134)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence            4689999999999999999999999999999999999999999999999999988654       346677889999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303          305 HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK  357 (358)
Q Consensus       305 ~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~  357 (358)
                      .+.||++++.+++++.|+|+|+.+.+.++++.+.++|+++.|++++++.|++-
T Consensus        81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~  133 (134)
T d3cuma1          81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT  133 (134)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999763

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=2.6e-19  Score=145.26  Aligned_cols=150  Identities=13%  Similarity=0.062  Sum_probs=109.9

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccc
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAAS  152 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~  152 (358)
                      |||||+|+||+.+++.|.+.++.+.+|+|++++.+.+.+.+.....++.++++++|+|++|+| +.++..++   .++. 
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~-d~~i~~v~---~~l~-   76 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP-DRYIKTVA---NHLN-   76 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC-TTTHHHHH---TTTC-
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc-chhhhHHH---hhhc-
Confidence            799999999999999997755556789999999999888766667788899999999999997 56777777   4442 


Q ss_pred             cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC
Q 018303          153 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD  232 (358)
Q Consensus       153 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~  232 (358)
                        .+++++|+++++.+.+.  + +.....+.+++..+..+...........++++++++.++.++++++.+|.+++++++
T Consensus        77 --~~~~ivi~~s~~~~~~~--l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2          77 --LGDAVLVHCSGFLSSEI--F-KKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             --CSSCCEEECCSSSCGGG--G-CSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             --ccceeeeecccchhhhh--h-hhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence              47899999998876533  1 122223455565555555444445556677888999999999999999999998865

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.72  E-value=4.8e-17  Score=131.50  Aligned_cols=142  Identities=14%  Similarity=0.193  Sum_probs=117.1

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ...++|+||| +|.||+.+|+.|.+.|++|.+||+++..             +.++.+..+|++++++| ...+..++  
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-------------~~~~~~~~~~~v~~~~~-~~~~~~v~--   70 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVP-INLTLETI--   70 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSC-GGGHHHHH--
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-------------ccchhhhhccccccccc-hhhheeee--
Confidence            4557999999 9999999999999999999999997643             23466788999999997 67888888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCCceEEEe-cCCHhHHHHHHHHHHHhc
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLA-AGDKSLYNTVAPLLDIMG  224 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~v~~ll~~~g  224 (358)
                       .++.+.++++++++|+++..+...+.+.+.+.   ..++ .+|+++++.....+...+++ +++++.++++.++|+.+|
T Consensus        71 -~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~---~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~G  146 (152)
T d2pv7a2          71 -ERLKPYLTENMLLADLTSVKREPLAKMLEVHT---GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWG  146 (152)
T ss_dssp             -HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTT
T ss_pred             -ecccccccCCceEEEecccCHHHHHHHHHHcc---CCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhC
Confidence             88889999999999999999887777766543   2455 46888887776667666555 567888999999999999


Q ss_pred             CCeEE
Q 018303          225 KSRFY  229 (358)
Q Consensus       225 ~~~~~  229 (358)
                      .+++.
T Consensus       147 a~v~e  151 (152)
T d2pv7a2         147 AKIYQ  151 (152)
T ss_dssp             CEEEE
T ss_pred             CEEEe
Confidence            98874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.70  E-value=2.5e-16  Score=129.68  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCc--cCCCHHHH-hhcCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK--YQPSPDEV-AASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~-~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++|+|||+|.||.++|+.|.+.|+  +|++||++++..+.+.+.+..  ...+.++. ...+|+|++|+| +..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhh-
Confidence            579999999999999999999885  789999999888877776642  23344443 357999999997 77888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC----cC----CCCceEEEec---CCHhHHH
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK----PA----EDGQLIFLAA---GDKSLYN  214 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~---g~~~~~~  214 (358)
                        .++.+.++++.+++|+++......+.+.+.+..+  ....+|+.+.+.    ..    -.+...+++.   .+++.++
T Consensus        80 --~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~--~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~  155 (171)
T d2g5ca2          80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK  155 (171)
T ss_dssp             --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHH
T ss_pred             --hhhhccccccccccccccccHHHHHHHHHhhccc--ccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHH
Confidence              7888889999999999999888888888777653  222345554432    11    1344445543   3788999


Q ss_pred             HHHHHHHHhcCCeEEe
Q 018303          215 TVAPLLDIMGKSRFYL  230 (358)
Q Consensus       215 ~v~~ll~~~g~~~~~~  230 (358)
                      .++.+++.+|.++..|
T Consensus       156 ~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         156 LVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             HHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHcCCEEEeC
Confidence            9999999999988764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=3.2e-16  Score=126.42  Aligned_cols=143  Identities=13%  Similarity=0.216  Sum_probs=105.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG  149 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~  149 (358)
                      |||||||+|+||+++++.|.+.|++|++|+|++++.+.+.+ .|+..+.+.++++++||+|++|++ +...+.++     
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl-----   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL-----   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-----
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-----
Confidence            68999999999999999999999999999999988877654 488888899999999999999995 77777776     


Q ss_pred             ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcCC
Q 018303          150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKS  226 (358)
Q Consensus       150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~~  226 (358)
                        +.+++++++|++..+..  ...+.+.+... ..++. .|...  .....+...+..+.  +++..+.++++|+.+|..
T Consensus        75 --~~l~~~~~iis~~agi~--~~~l~~~l~~~-~~ivr~mPN~~--~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~  147 (152)
T d2ahra2          75 --KPLHFKQPIISMAAGIS--LQRLATFVGQD-LPLLRIMPNMN--AQILQSSTALTGNALVSQELQARVRDLTDSFGST  147 (152)
T ss_dssp             --TTSCCCSCEEECCTTCC--HHHHHHHHCTT-SCEEEEECCGG--GGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             --hhcccceeEeccccccc--HHHHHhhhccc-ccchhhccchh--hhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence              34678899998866543  34566666432 33433 23221  11222222232232  688999999999999964

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.54  E-value=4.9e-15  Score=119.39  Aligned_cols=144  Identities=18%  Similarity=0.176  Sum_probs=102.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |+|||||+|+||+++++.|.+.| ++|.+|||++++.+.+.+. ++...++.++ +.++|+||+|++ |.+++.++   +
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~   75 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K   75 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence            68999999999999999988766 8999999999988887664 7777766655 578999999995 88888888   5


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcC
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGK  225 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~  225 (358)
                      ++.   +.+.++|++..+...  +.+.+.+... ..++. .|..  +.....+...+..+.  +++..+.++.+|+.+|.
T Consensus        76 ~l~---~~~~~viS~~ag~~~--~~l~~~l~~~-~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~  147 (152)
T d1yqga2          76 NIR---TNGALVLSVAAGLSV--GTLSRYLGGT-RRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL  147 (152)
T ss_dssp             TCC---CTTCEEEECCTTCCH--HHHHHHTTSC-CCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred             HHh---hcccEEeecccCCCH--HHHHHHhCcC-cceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence            553   357889977666544  4566666432 22332 2322  222233433333332  58888999999999996


Q ss_pred             Ce
Q 018303          226 SR  227 (358)
Q Consensus       226 ~~  227 (358)
                      .+
T Consensus       148 ~~  149 (152)
T d1yqga2         148 TV  149 (152)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=120.38  Aligned_cols=154  Identities=12%  Similarity=0.099  Sum_probs=112.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C------------------CCccCCCHH
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQPSPD  121 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~------------------g~~~~~~~~  121 (358)
                      ++|+|||+|.||+.+|..++..|++|++||++++..+...+           .                  .+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            59999999999999999999999999999999875443211           1                  134567888


Q ss_pred             HHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCc
Q 018303          122 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQ  201 (358)
Q Consensus       122 ~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  201 (358)
                      +++.+||+|+.|+|...+++.-+|  +++-+..++++++...+++.+..  .+.+.+... -.++..+.+..+..   .+
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~ig~HffnP~~~---~~  156 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT--SIANATTRQ-DRFAGLHFFNPVPV---MK  156 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCG-GGEEEEEECSSTTT---CC
T ss_pred             hhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCcccccc--hhhhhccCH-hHEEeeccccccCc---cc
Confidence            999999999999999999888775  66777788898888665555543  355544332 23444433332221   23


Q ss_pred             eEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC
Q 018303          202 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD  232 (358)
Q Consensus       202 ~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~  232 (358)
                      ++-++.+   +++.++.+..+++.+|+.++.+.+
T Consensus       157 lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         157 LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            4444443   789999999999999999998865

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.48  E-value=8.9e-15  Score=121.92  Aligned_cols=151  Identities=11%  Similarity=0.134  Sum_probs=110.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEe
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~  133 (358)
                      +.++||+|||+|.||+++|..|+..|++|.+|+|+++..+.+...              .+....+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            444689999999999999999999999999999998877766432              234567899999999999999


Q ss_pred             eCChhhHhhhhcccccccc-----cCCCCCEEEEccCCCh-h----HHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceE
Q 018303          134 LADPESAMDVACGKHGAAS-----GMGPGKGYVDVSTVDG-D----TSKLINGHIKATGASFLEAPVSGSKKPAEDGQLI  203 (358)
Q Consensus       134 vp~~~~~~~~~~~~~~~~~-----~l~~~~~vi~~s~~~~-~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  203 (358)
                      +| +..++.++   +++.+     ..+++..+++++-|-. .    ..+.+.+.+....+.++..|.+..+.........
T Consensus        85 vP-s~~~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~  160 (189)
T d1n1ea2          85 IP-TQFLRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCV  160 (189)
T ss_dssp             SC-HHHHHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEE
T ss_pred             Cc-HHHHHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEE
Confidence            97 77888877   54433     2456777888866532 1    1233444444445677888877665444444555


Q ss_pred             EEecCCHhHHHHHHHHHHH
Q 018303          204 FLAAGDKSLYNTVAPLLDI  222 (358)
Q Consensus       204 ~~~~g~~~~~~~v~~ll~~  222 (358)
                      .+.+.+.+..+.++++|..
T Consensus       161 viAs~~~~~a~~i~~lfst  179 (189)
T d1n1ea2         161 SIASADINVARRLQRIMST  179 (189)
T ss_dssp             EEECSSHHHHHHHHHHHSC
T ss_pred             EEEeCCHHHHHHHHHHhCC
Confidence            6666788888999999874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=5e-13  Score=112.57  Aligned_cols=159  Identities=16%  Similarity=0.074  Sum_probs=112.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv  130 (358)
                      |+|+|||+|.+|..+|..|+..|++|++||.++++.+.+...                    .....++..++++++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            689999999999999999999999999999998877665421                    134567889999999999


Q ss_pred             EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--------CCeEecCCCCCC
Q 018303          131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--------GASFLEAPVSGS  193 (358)
Q Consensus       131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~  193 (358)
                      ++|+|.+.         ....++..-........++.++|..|+..|...+.+...+.+.        .+.+..+|.+-.
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99998642         1222320002344556789999999999999888776554321        345667777654


Q ss_pred             CCcC----CCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303          194 KKPA----EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY  229 (358)
Q Consensus       194 ~~~~----~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~  229 (358)
                      +-..    ...+-.++.+.+++..+.++++++.+...++.
T Consensus       161 ~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred             ccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence            4221    11222233334788899999999988766554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=2.4e-14  Score=122.53  Aligned_cols=156  Identities=10%  Similarity=0.058  Sum_probs=126.7

Q ss_pred             CeEEEEcCCh--hHHHHHH------HHHHCCCcEEEEcCCccch-hhHH-------------------------------
Q 018303           71 GRIGFLGMGI--MGTPMAQ------NLLKAGCDVTVWNRTKSKC-DPLI-------------------------------  110 (358)
Q Consensus        71 ~~IgIIG~G~--iG~~~a~------~l~~~g~~V~~~~~~~~~~-~~~~-------------------------------  110 (358)
                      .+++++|+|.  ||..+++      .+++.|+.|+..|.++++. +.+.                               
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            3578998886  8888888      5788999999998886542 1110                               


Q ss_pred             -----hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303          111 -----SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       111 -----~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                           +.|+..++|+.|+++++|+||+|+|.+..++.++   +++.+.+++|++++|+|+..+.....+.+.+.++++.+
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~v  197 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNI  197 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEE
Confidence                 1145667899999999999999999888889999   89999999999999999999999999999998889999


Q ss_pred             ecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303          186 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL  230 (358)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  230 (358)
                      ++.+.+..+ ......++....++++.++++.++|+.+|++++.+
T Consensus       198 i~~hp~a~p-e~~g~~li~~~~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         198 TSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             EECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             ECCCccCcC-ccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence            987665544 33344555555679999999999999999988765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.43  E-value=1.2e-13  Score=114.82  Aligned_cols=153  Identities=13%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-------------CccCCCHHHHhhc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAAS  126 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~  126 (358)
                      ++|+|||+|.||+.+|..++..|++|.+||++++..+...+           .+             +....+.+ .+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-cccc
Confidence            48999999999999999999999999999999876543211           11             22333444 4678


Q ss_pred             CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                      +|+|+.++|...+++.-+|  +++-+..++++++...+++.+..  .+.+.+... -.++..+.+..++..   +++-++
T Consensus        84 adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i~--~la~~~~~p-~r~~g~Hf~nP~~~~---~lVEiv  155 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS--LLAKALKRP-ENFVGMHFFNPVHMM---PLVEVI  155 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCG-GGEEEEECCSSTTTC---CEEEEE
T ss_pred             cceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccHH--HHHHhccCc-hheEeeccccCcccC---CeEEEC
Confidence            9999999999999888764  77778888999988666655553  455555432 245555554443322   233233


Q ss_pred             c---CCHhHHHHHHHHHHHhcCCeEEeCC
Q 018303          207 A---GDKSLYNTVAPLLDIMGKSRFYLGD  232 (358)
Q Consensus       207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~  232 (358)
                      .   .+++.++.+..+++.+|+.++.+.+
T Consensus       156 ~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  184 (186)
T d1wdka3         156 RGEKSSDLAVATTVAYAKKMGKNPIVVND  184 (186)
T ss_dssp             ECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            3   3789999999999999999998865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.41  E-value=1.2e-13  Score=114.19  Aligned_cols=153  Identities=10%  Similarity=0.101  Sum_probs=104.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc--chhhHHhCC-------------CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS--KCDPLISLG-------------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~--~~~~~~~~g-------------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |+|+|||+|.||+++|..|+..|++|.+|.|+.+  ..+.+...+             +...++++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            7999999999999999999999999999998543  233333211             2345688899999999999997


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCCh-h------HHHHHHHHHHh--cCCeEecCCCCCCCCcCCCCceEEEe
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-D------TSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLA  206 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~------~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (358)
                       +..++.++   +++.+.+++.. ++.++.+.. .      ..+.+.+....  ..+.++..|.+..+..........+.
T Consensus        81 -s~~~~~~~---~~l~~~l~~~~-ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via  155 (180)
T d1txga2          81 -TDGVLPVM---SRILPYLKDQY-IVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS  155 (180)
T ss_dssp             -GGGHHHHH---HHHTTTCCSCE-EEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred             -hhhhHHHH---Hhhccccccce-ecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE
Confidence             78999998   77877776654 444444421 1      12222222221  13456777877665444444455666


Q ss_pred             cCCHhHHHHHHHHHHHhcCCeE
Q 018303          207 AGDKSLYNTVAPLLDIMGKSRF  228 (358)
Q Consensus       207 ~g~~~~~~~v~~ll~~~g~~~~  228 (358)
                      +.+.+..+.++++|+.=.++++
T Consensus       156 s~~~~~a~~i~~~f~~~~frvy  177 (180)
T d1txga2         156 SPSESSANKMKEIFETEYFGVE  177 (180)
T ss_dssp             CSCHHHHHHHHHHHCBTTEEEE
T ss_pred             cCCHHHHHHHHHHHCCCCEEEE
Confidence            7788888899998865444443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.39  E-value=1.1e-12  Score=108.53  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC---------------CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +||+|||+|+||..+|..|+..|++|.+|+|++++.+.+...+               ....+++.|+++++|+|++++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~   81 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   81 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence            6999999999999999999999999999999988877765432               2235688999999999999996


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT  181 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~  181 (358)
                       +..++.++   +++.+.++++++++..++. ......+.+.+...
T Consensus        82 -~~~~~~~~---~~i~~~l~~~~~iv~~~g~-~~~~~~~~~~~~~~  122 (184)
T d1bg6a2          82 -AIHHASIA---ANIASYISEGQLIILNPGA-TGGALEFRKILREN  122 (184)
T ss_dssp             -GGGHHHHH---HHHGGGCCTTCEEEESSCC-SSHHHHHHHHHHHT
T ss_pred             -hhHHHHHH---HHhhhccCCCCEEEEeCCC-CccHHHHHHHHHHh
Confidence             77889998   8888999999988755443 33344555666554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.7e-12  Score=99.01  Aligned_cols=104  Identities=14%  Similarity=0.042  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+|+++|+|+|.+|+.+|++++.+|++|++++++|.+.-...-.|... .++++++..+|+++.++.    .++++  
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTG----n~~vI--   93 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTG----CIDII--   93 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSS----CSCSB--
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCC----Cccch--
Confidence            57789999999999999999999999999999999986544444456554 489999999999988884    45566  


Q ss_pred             cccccccCCCCCEEEEccC-CChhHHHHHHHH
Q 018303          147 KHGAASGMGPGKGYVDVST-VDGDTSKLINGH  177 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~  177 (358)
                      +.+-++.||+|+++.|++. ...++.+.|.+.
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhc
Confidence            5777899999999999864 455666666654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2e-11  Score=99.10  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC-------CccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-------AKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      |||+|||+|.||+.+|..|++.|++|.+++|++++.+.....+       .....+..+....+|+|+++++ +.+++.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH
Confidence            7999999999999999999999999999999887655433211       1122344566789999999995 8899999


Q ss_pred             hcccccccccCCCCCEEEEccCCCh
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      +   +.+.+.+.+++.|+.+.++..
T Consensus        80 ~---~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          80 V---KSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             H---HHHHTTSCTTSCEEEECSSSC
T ss_pred             H---HhhccccCcccEEeeccCccc
Confidence            8   888888889999998877754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.94  E-value=1.6e-09  Score=90.23  Aligned_cols=120  Identities=12%  Similarity=0.020  Sum_probs=82.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC------------------CCccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL------------------GAKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~aDivi~  132 (358)
                      |||+|||+|.+|..+|..++ .|++|++||.++++.+.+...                  ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            78999999999999998775 699999999999887765431                  12233455666788999999


Q ss_pred             eeCChhhHhhhh------cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303          133 MLADPESAMDVA------CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS  193 (358)
Q Consensus       133 ~vp~~~~~~~~~------~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  193 (358)
                      ++|.+..-..-.      ....+.....+++.+++..|+..+...+.+...+.+..  +...|.+-.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~--~~~~PE~i~  144 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDR--IIFSPEFLR  144 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSC--EEECCCCCC
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhh--hccchhhcc
Confidence            998654322110      00011122346788999999999999888877765543  444565533

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.93  E-value=1.3e-09  Score=85.99  Aligned_cols=96  Identities=16%  Similarity=0.077  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .+.+|++.|+|+|.+|+.+|++++..|.+|++++++|-++-+..-.|... .+++|+++.+|++|.++...    +++  
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~----~vI--   92 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVI--   92 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSB--
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCC----ccc--
Confidence            56788999999999999999999999999999999986544444456665 58999999999999999643    355  


Q ss_pred             cccccccCCCCCEEEEccCCChh
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      +.+-+..||+|+++.|.+.-...
T Consensus        93 ~~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          93 KLEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             CHHHHTTCCTTCEEEECSSTTTS
T ss_pred             cHHHHHHhhCCeEEEeccccchh
Confidence            46667899999999999776543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.82  E-value=7.3e-09  Score=82.08  Aligned_cols=91  Identities=23%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++++|+|||+|..|.+-|..|+..|.+|++--|... ..+...+.|..+. +.+|+++.+|+|.+.+| +..-..++  
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~P-D~~q~~vy--   89 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTP-DEFQGRLY--   89 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSC-HHHHHHHH--
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecc-hHHHHHHH--
Confidence            4568999999999999999999999999999877543 3345556677764 89999999999999998 44555565  


Q ss_pred             cccccccCCCCCEEEE
Q 018303          147 KHGAASGMGPGKGYVD  162 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~  162 (358)
                      ++++.+.|++|+.+.-
T Consensus        90 ~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          90 KEEIEPNLKKGATLAF  105 (182)
T ss_dssp             HHHTGGGCCTTCEEEE
T ss_pred             HHhhhhhcCCCcEEEE
Confidence            3578899999998763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.73  E-value=5.8e-09  Score=86.12  Aligned_cols=174  Identities=13%  Similarity=0.139  Sum_probs=90.6

Q ss_pred             CeEEEE-cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------CCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgII-G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      |||+|| |+|.||+++|+.|++.|++|.+++|++++.+.+.+.       ......+........+....+.+.......
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchH
Confidence            689999 899999999999999999999999999887766542       112223445555566676666643333222


Q ss_pred             hhcc--cccccccCCCCCEEEEc-----cCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCcCCCCceEEEecCCHh
Q 018303          143 VACG--KHGAASGMGPGKGYVDV-----STVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAGDKS  211 (358)
Q Consensus       143 ~~~~--~~~~~~~l~~~~~vi~~-----s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  211 (358)
                      ....  ...............+.     ..............+....    ......+....+. ..........+.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~  159 (212)
T d1jaya_          81 ARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLD-EKFDWDVPVCGDDDE  159 (212)
T ss_dssp             HHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTT-CCCCEEEEEEESCHH
T ss_pred             HHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCcc-cccCccceEEeCCHH
Confidence            2100  00000000011111110     0111112223333333321    1112222222222 222333444555666


Q ss_pred             HHHHHHH-HHHHhcCCeEEeCCcChHHHHHHHHHH
Q 018303          212 LYNTVAP-LLDIMGKSRFYLGDVGNGAAMKLVVNM  245 (358)
Q Consensus       212 ~~~~v~~-ll~~~g~~~~~~g~~g~~~~~k~~~n~  245 (358)
                      ....+.. +.+..|+++++.|....+...+.....
T Consensus       160 a~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~l  194 (212)
T d1jaya_         160 SKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL  194 (212)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred             HHHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHHH
Confidence            6555544 556789999988887766666554443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=4.1e-08  Score=78.94  Aligned_cols=107  Identities=20%  Similarity=0.236  Sum_probs=78.0

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +||||||+|.||.. ....+... ++++. ++|+++++.+.+.+ .++..+++.+++.++.|+|++++|...+.+.+.  
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~--   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence            58999999999986 56667654 56654 68999888776654 377788899999999999999998665555544  


Q ss_pred             cccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCe
Q 018303          147 KHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  184 (358)
                           ..++.|..|+.-  -.....+...+.+..++.+..
T Consensus        80 -----~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 -----TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             -----HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -----ccccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence                 345667655543  234567777888887776643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.71  E-value=9.7e-09  Score=82.14  Aligned_cols=71  Identities=27%  Similarity=0.286  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCCh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~  137 (358)
                      .+.+++|.|||+|.||+.+++.|...|. ++++++|+.++.+.+... +..  ..+++.+.+.++|+||.|++.+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~   95 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP   95 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence            5677899999999999999999999997 699999998887766553 432  3457778888999999999643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.60  E-value=4.6e-08  Score=79.43  Aligned_cols=109  Identities=21%  Similarity=0.216  Sum_probs=75.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC---------CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------AKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      .++|.|||+|.||..+|+.|.+.|++|+++||+.++++.+.+..         .......++.+...|+++.++|.. ..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~-~~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT-FH   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGG-GH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccch-hh
Confidence            46999999999999999999999999999999999888876531         111223456677899999988743 33


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                      ....   .   ...+.+..+++.+...+ ....+.+.....+..++
T Consensus        81 ~~~~---~---~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~  119 (182)
T d1e5qa1          81 ATVI---K---SAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVM  119 (182)
T ss_dssp             HHHH---H---HHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEE
T ss_pred             hHHH---H---HHHhhccceeecccCcH-HHHHHHHHhccccceee
Confidence            3333   1   23445677887765544 34466666665555444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=6.6e-08  Score=74.86  Aligned_cols=74  Identities=12%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHH-hhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEV-AASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~-~~~aDivi~~vp~~~~~~~  142 (358)
                      |++.|+|+|++|+.+++.|.+.|++|.++|.+++..+.+.+.+...       ...+.++ ++++|.+++++|.+.....
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            4689999999999999999999999999999999888776654321       2233344 6789999999986555444


Q ss_pred             hh
Q 018303          143 VA  144 (358)
Q Consensus       143 ~~  144 (358)
                      ++
T Consensus        81 ~~   82 (134)
T d2hmva1          81 LT   82 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=2.3e-07  Score=75.84  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=77.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhC-C----CccCCCHHHHhh--cCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISL-G----AKYQPSPDEVAA--SCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g----~~~~~~~~~~~~--~aDivi~~vp~~~~~~  141 (358)
                      +||||||+|.||+..++.+... +++|. ++|+++++.+.+.+. +    ...+++++++++  +.|+|++++|.....+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            4899999999999999999875 56766 689998876665442 3    345789999985  4799999998666655


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.       ..++.|..++--  ......+.+.+.+..++.+..+
T Consensus        82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             hhh-------hhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            554       345667766543  2235566677777777666543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.51  E-value=5.4e-08  Score=77.21  Aligned_cols=97  Identities=21%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC---CCcc----CCCHHHHhhcCCEEEEeeC-Chhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---GAKY----QPSPDEVAASCDVTFAMLA-DPES  139 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~---g~~~----~~~~~~~~~~aDivi~~vp-~~~~  139 (358)
                      ....+|.|||.|..|..-++.+...|.+|.++|.++++.+.+...   .+..    ...+.+.++++|+||-++- ....
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            455799999999999999999999999999999998887766543   1111    1245677889999999883 2345


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ...++  .++.++.||||+++||++-.
T Consensus       110 aP~lI--t~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         110 APILV--PASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             CCCCB--CHHHHTTSCTTCEEEETTCT
T ss_pred             cCeee--cHHHHhhcCCCcEEEEeecC
Confidence            66677  68889999999999999653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.51  E-value=2.8e-07  Score=74.06  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC-----------------------------
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-----------------------------  118 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~-----------------------------  118 (358)
                      ...-+|.|||+|..|..-++.....|.+|.++|.++++.+.+...+..+..                             
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            344689999999999999999999999999999999988888776433221                             


Q ss_pred             CHHHHhhcCCEEEEeeCC-hhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          119 SPDEVAASCDVTFAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       119 ~~~~~~~~aDivi~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.+.++++|+||.++-- ......++  +++..+.||||.++||++-
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEee
Confidence            122447789999988732 23455566  6888899999999999954

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.50  E-value=2e-07  Score=76.93  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+.++||+|.|+|++|..+|+.|.+.|.+|+++|.++.........+.... +.++++. +|||++-|--     .+.+ 
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~-----~~~I-   96 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM-----GGVI-   96 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC-----SCCB-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc-----cccc-
Confidence            577889999999999999999999999999999999888777777676655 5566665 6999886652     2334 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                       +++..+.++ -.+|+..++.+. ..++..+.|.++|+.++
T Consensus        97 -~~~~a~~i~-ak~i~e~AN~p~-~~~~~~~~L~~rgI~~i  134 (201)
T d1c1da1          97 -TTEVARTLD-CSVVAGAANNVI-ADEAASDILHARGILYA  134 (201)
T ss_dssp             -CHHHHHHCC-CSEECCSCTTCB-CSHHHHHHHHHTTCEEC
T ss_pred             -cHHHHhhhh-hheeeccCCCCc-chhhHHHHhcccceEEE
Confidence             333444453 345655555444 33456778888888775

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.49  E-value=6.7e-08  Score=78.13  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      .+||||||+|.||+.+++.+.+. ++++. +++++++....   .+.....+..++..+.|+|++|+|.....+.+.   
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~---   76 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA---   76 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH---
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---cccccchhhhhhccccceEEEeCCCcccHHHHH---
Confidence            46899999999999999999875 56655 67887654332   234555677788889999999998665544443   


Q ss_pred             ccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCC
Q 018303          148 HGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGA  183 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~  183 (358)
                          ..+..|..+|.+.-.   .+...+.+.++.+.++.
T Consensus        77 ----~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~  111 (170)
T d1f06a1          77 ----PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (170)
T ss_dssp             ----HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence                456788887754322   23334456666555543

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.49  E-value=2.2e-07  Score=76.15  Aligned_cols=91  Identities=19%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             CCC-CeEEEEcCChhHHHHHHHHHHCC------CcEEEEcCC-ccchhhHHhCCCcc----CCCHHHHhhcCCEEEEeeC
Q 018303           68 ELP-GRIGFLGMGIMGTPMAQNLLKAG------CDVTVWNRT-KSKCDPLISLGAKY----QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~-~~IgIIG~G~iG~~~a~~l~~~g------~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp  135 (358)
                      ..+ ++|+|||+|+.|.+-|..|+..|      .+|.+--|. ....+...+.|...    +.+..|+++.+|+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            345 78999999999999999999954      567765443 34556666667642    3378899999999999998


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEE
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVD  162 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~  162 (358)
                       +..-..++   +++.+.|++|+.+.-
T Consensus       121 -De~Q~~vy---~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 -DSAQADNY---EKVFSHMKPNSILGL  143 (226)
T ss_dssp             -HHHHHHHH---HHHHHHSCTTCEEEE
T ss_pred             -hHHHHHHH---HHHHHhcCCCceeee
Confidence             45555566   578899999998763

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.46  E-value=2.4e-07  Score=74.54  Aligned_cols=108  Identities=10%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCcEEEEcCCccchhhHHhC-CC-ccCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303           71 GRIGFLGMGIMGTP-MAQNLLKA-GCDVTVWNRTKSKCDPLISL-GA-KYQPSPDEVAA-SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        71 ~~IgIIG~G~iG~~-~a~~l~~~-g~~V~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~  145 (358)
                      +||||||+|.+|+. ....+... +.++.++|+++++.+.+.+. +. ..+++.+++++ +.|+|++++|.....+.+. 
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~-   80 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA-   80 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence            58999999999976 56677655 56788999998887776553 43 34667888875 5799999998665555554 


Q ss_pred             ccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          146 GKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                            ..++.|..|+..  -.....+...+.+..++.+..+
T Consensus        81 ------~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          81 ------FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             ------HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ------cccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence                  234455544432  2345566778888887766543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=5.6e-07  Score=73.28  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHCC--CcEE-EEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKAG--CDVT-VWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~g--~~V~-~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~vp~~~~~~  141 (358)
                      ..||||||+|.+|+. .+..+...+  ++|. ++|+++++.+.+.+. +. ..+++.+|++++  .|+|++++|...+.+
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~   82 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP   82 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc
Confidence            358999999999987 577787654  4555 689998887766543 33 457899999864  799999998655544


Q ss_pred             hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCe
Q 018303          142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      .+.       ..++.|..|+.-  -.....+..++.+..++.+..
T Consensus        83 ~~~-------~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          83 FIE-------KALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             HHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             ccc-------cccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            443       345567666543  233566677788887776543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.37  E-value=9e-07  Score=68.08  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCcc----CCCHHHH----hhcCCEEEEeeCChhhHh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY----QPSPDEV----AASCDVTFAMLADPESAM  141 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~  141 (358)
                      |+|.|+|+|++|+.+++.|.+.|++|.+.|.++++.+.+.+. +...    ..+.+-+    ++++|.++.+++.+ +..
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d-~~N   79 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE-EVN   79 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH-HHH
Confidence            689999999999999999999999999999999988877653 4322    2233222    46799999998654 333


Q ss_pred             hhhcccccccccCCCCCEEE
Q 018303          142 DVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi  161 (358)
                      -++   ......+.+..++.
T Consensus        80 ~~~---~~~~k~~~~~~iI~   96 (132)
T d1lssa_          80 LMS---SLLAKSYGINKTIA   96 (132)
T ss_dssp             HHH---HHHHHHTTCCCEEE
T ss_pred             HHH---HHHHHHcCCceEEE
Confidence            333   33444566666654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.31  E-value=6.6e-07  Score=75.28  Aligned_cols=110  Identities=12%  Similarity=0.105  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CC-----ccCCCHHHHhh--cCCEEEEeeCCh
Q 018303           69 LPGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GA-----KYQPSPDEVAA--SCDVTFAMLADP  137 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~-----~~~~~~~~~~~--~aDivi~~vp~~  137 (358)
                      +.-+|||||+|.||+. +...+... +++|. ++|+++++.+.+.+. ++     ..++|.+++++  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            4458999999999974 66666654 56766 789999887776543 33     34678999886  478999999866


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF  185 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~  185 (358)
                      .+.+.++       ..++.|..|+.-  -...+.+...+.+..++.+..+
T Consensus       112 ~H~~~~~-------~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~  154 (221)
T d1h6da1         112 LHAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL  154 (221)
T ss_dssp             GHHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHH-------HhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence            5555554       345667766644  2345667778888777766543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.26  E-value=1.6e-06  Score=67.73  Aligned_cols=93  Identities=11%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHH----h----C--CCccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S----L--GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~----~----~--g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ...+||+|||+|++|..+|..|...|  .+|.++|+++++.+...    +    .  ......+.++ +++||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEecc
Confidence            44679999999999999999998877  58999999876543221    1    1  1223345554 689999999874


Q ss_pred             Chhh---------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          136 DPES---------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       136 ~~~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+..               ++.+.   +++. ...|++++++.++
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~---~~i~-~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIV---KPVV-DSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHH---HHHH-HTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHH---HHHh-hcCCCcEEEEeCC
Confidence            3221               12222   3333 3467888888775

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=1.4e-06  Score=68.26  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----h------CCCccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      ...++||+|||+|.+|..+|..+...|.  ++.++|+++++.+...    +      .......+..+.+++||+|+++.
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvita   82 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA   82 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEec
Confidence            3455799999999999999999988774  7999999877643221    1      11222233346688999999987


Q ss_pred             CC
Q 018303          135 AD  136 (358)
Q Consensus       135 p~  136 (358)
                      ..
T Consensus        83 g~   84 (148)
T d1ldna1          83 GA   84 (148)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.24  E-value=2.9e-06  Score=66.93  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+.+||+|||+|.+|+.+|..+...+. ++.++|.++++++....        .+    .....+.++.++++|+|+++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            445799999999999999998887775 79999998876543221        11    222456678899999999988


Q ss_pred             C
Q 018303          135 A  135 (358)
Q Consensus       135 p  135 (358)
                      .
T Consensus        85 g   85 (154)
T d1pzga1          85 G   85 (154)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.23  E-value=6.1e-06  Score=59.54  Aligned_cols=95  Identities=16%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHH
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLA  313 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~  313 (358)
                      ..++..|++.|.+.+.-++.++|...+|++.|+|..++.+.+....-..     ..+..+.  ..+|+....+.||+..+
T Consensus         2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~-----~~~~~~~--pG~G~GG~ClpKD~~al   74 (98)
T d1mv8a1           2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLN-----LSRYYMR--PGFAFGGSCLPKDVRAL   74 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTT-----TSSTTCS--CCSCCCSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcccc-----ccccccC--CcccCCccccchhHHHH
Confidence            3688999999999999999999999999999999999999887542100     0011110  11355667899999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHH
Q 018303          314 LGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       314 ~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      ...+++.+++.++++++.+.-.
T Consensus        75 ~~~a~~~~~~~~ll~~~~~~N~   96 (98)
T d1mv8a1          75 TYRASQLDVEHPMLGSLMRSNS   96 (98)
T ss_dssp             HHHHHHTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHcCCChHHHHHHHHHHh
Confidence            9999999999999998887654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=5.6e-06  Score=66.39  Aligned_cols=111  Identities=25%  Similarity=0.236  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHH-HhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDE-VAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~-~~~~aDivi~~vp~~~~~~  141 (358)
                      ...+++|.|+|+|..+++++..|...|.+|.+++|+.++.+.+.+.    +.....+.++ ...++|+||.|+|....-.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~   94 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccC
Confidence            4567899999999999999999999999999999999887766542    1111123333 2356999999998764322


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                       ..   .--...++++.+++|+.=.+..+.  +.+..++.|.
T Consensus        95 -~~---~~~~~~~~~~~~v~D~vY~P~~T~--ll~~A~~~G~  130 (170)
T d1nyta1          95 -IP---AIPSSLIHPGIYCYDMFYQKGKTP--FLAWCEQRGS  130 (170)
T ss_dssp             -CC---CCCGGGCCTTCEEEESCCCSSCCH--HHHHHHHTTC
T ss_pred             -CC---CCcHHHhccCcEEEEeecCCCCCH--HHHHHHHcCC
Confidence             11   222345788999999966554432  5555555553

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.13  E-value=3.8e-06  Score=66.34  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHHCC-CcE-EEEcCCccch--hhHHhCCCccCCC-HHHHh-----hcCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTP-MAQNLLKAG-CDV-TVWNRTKSKC--DPLISLGAKYQPS-PDEVA-----ASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~-~a~~l~~~g-~~V-~~~~~~~~~~--~~~~~~g~~~~~~-~~~~~-----~~aDivi~~vp~~~  138 (358)
                      ..||||||+|.+|+. +.+.++.+. .++ .+++|+++..  ....+.++....+ .++++     .+.|+|++++|...
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~   83 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence            368999999999986 567776654 354 4578876543  2334456654433 45443     35899999998666


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +.++..     .....+.|.++||.+.
T Consensus        84 h~~~~~-----~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          84 HVQNEA-----LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHH-----HHHHHCTTCEEEECST
T ss_pred             HHHhHH-----HHHHHHcCCEEEEccc
Confidence            666544     2345689999999986

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=2.7e-06  Score=68.08  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhh--Hhhhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPES--AMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~--~~~~~  144 (358)
                      .+++|.|||+|..|++++..|...|. +|.+++|++++.+.+.+. +.....+..  ..++|+||.|+|....  ....-
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~   93 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD   93 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCcccccccc
Confidence            45789999999999999999999996 799999999888777643 333322222  2579999999985321  11110


Q ss_pred             cccccc-cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          145 CGKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       145 ~~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                         -.+ ...++++.+++|+.-.+..+.  +.+..++.|...++
T Consensus        94 ---l~~~~~~~~~~~~v~D~vY~P~~T~--ll~~A~~~G~~~i~  132 (167)
T d1npya1          94 ---LAFPKAFIDNASVAFDVVAMPVETP--FIRYAQARGKQTIS  132 (167)
T ss_dssp             ---CSSCHHHHHHCSEEEECCCSSSSCH--HHHHHHHTTCEEEC
T ss_pred             ---ccccHhhcCCcceEEEEeeccCCCH--HHHHHHHCCCeEEE
Confidence               000 122457789999866544433  55666666655544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=8.7e-06  Score=66.01  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CC----ccC---CCHHHHhhcCCEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GA----KYQ---PSPDEVAASCDVT  130 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~----~~~---~~~~~~~~~aDiv  130 (358)
                      ++.+++|.|||+|..|++++..|...|. ++.+++|++++.+++...        ..    ...   .++.+.+.++|+|
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            5677899999999999999999999887 688999998876653320        11    111   1234567789999


Q ss_pred             EEeeCChhhH---hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          131 FAMLADPESA---MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       131 i~~vp~~~~~---~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |.++|.....   +.+.    .-...++++.+++|+.=.+..+  .+.+..++.|..+++
T Consensus        95 IN~Tp~G~~~~~~~~~~----~~~~~~~~~~~v~Di~Y~p~~T--~ll~~a~~~g~~~i~  148 (182)
T d1vi2a1          95 TNGTKVGMKPLENESLV----NDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTID  148 (182)
T ss_dssp             EECSSTTSTTSCSCCSC----CCGGGSCTTCEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred             ccccCCccccccchhhh----hHHHhhhcchhhHHhhcCcccc--HHHHHHHHCcCeEec
Confidence            9999854321   1111    1134578999999996543332  355555666665554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=2.7e-06  Score=60.99  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=45.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhCCCc-cCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAK-YQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~-~~~~~~~~~~~aDivi~~v  134 (358)
                      +..+++|.|+|+|..|.++|+.|.+.|++|+++|.+...  .+.+.+.... .....++.+.+.|+||++-
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence            466789999999999999999999999999999985542  2222111111 1112234556677777654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.05  E-value=5.8e-06  Score=64.43  Aligned_cols=65  Identities=23%  Similarity=0.378  Sum_probs=47.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----h----CC--C-ccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S----LG--A-KYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~----~g--~-~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      +||+|||+|++|..+|..+...|.  ++.++|+++++.+...    +    .+  . ....+. +.+++||+|+++...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEeccc
Confidence            589999999999999999987764  7999999877643221    1    11  1 122343 457899999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.03  E-value=7.9e-06  Score=63.44  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHH----h------CCCcc-CCCHHHHhhcCCEEEEeeCCh
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S------LGAKY-QPSPDEVAASCDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~----~------~g~~~-~~~~~~~~~~aDivi~~vp~~  137 (358)
                      |||+|||+|++|..++..+...|  -++.++|+++++.+...    +      ..... .++..+.+++||+|+++...+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            68999999999999999999887  48999999887644221    1      11211 224456689999999996321


Q ss_pred             --h-h------------HhhhhcccccccccCCCCCEEEEccC
Q 018303          138 --E-S------------AMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 --~-~------------~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                        + .            ++.+.   +.+.+ ..|++++++.++
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~---~~i~~-~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVT---DNIMK-HSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHH---HHHHH-HCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHH---HHhhc-cCCCeEEEEecC
Confidence              1 1            12222   33332 358889998866

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=98.03  E-value=4.1e-06  Score=74.46  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-----CC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPES  139 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivi~~vp~~~~  139 (358)
                      ..++++|||+|.++...++.+.. ++ .+|.+|+|++++.+.+.+.     |+  ..+++++++++.||+|+.|++ +..
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCC
Confidence            34689999999999999998854 55 4799999999887766531     33  457899999999999999995 445


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      ...++  +   ...++||.+|..++.-.|
T Consensus       206 ~~Pv~--~---~~~l~pG~hI~aiGs~~p  229 (340)
T d1x7da_         206 YATII--T---PDMLEPGMHLNAVGGDCP  229 (340)
T ss_dssp             EEEEE--C---GGGCCTTCEEEECSCCBT
T ss_pred             CCccc--c---hhhcCCCCEEeecccchh
Confidence            55666  2   246899999988876544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=5.6e-06  Score=64.09  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHh---------CCCccCCCHHHHhhcCCEEEEeeCChh-
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS---------LGAKYQPSPDEVAASCDVTFAMLADPE-  138 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~aDivi~~vp~~~-  138 (358)
                      |||+|||+|++|..+|..+...+  -++.++|+++++.+....         .......+..+.+++||+|+++...+. 
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            68999999999999999888766  479999998766543211         012222333456899999999974321 


Q ss_pred             --hH--------hhhhcc-cccccccCCCCCEEEEccC
Q 018303          139 --SA--------MDVACG-KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 --~~--------~~~~~~-~~~~~~~l~~~~~vi~~s~  165 (358)
                        ..        ..++.. -+.+ ....|++++++.++
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i-~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNV-SKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHH-HHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHH-HhcCCCcEEEEeCC
Confidence              11        111200 0222 23458889998765

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.02  E-value=5.9e-06  Score=69.18  Aligned_cols=111  Identities=13%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~  144 (358)
                      ++.+++|.|-|+|++|..+|+.|.+.|.+|++.|.++...+.+.. .+.... +.++++ .+|||++-|--     .+.+
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~I  109 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAVL  109 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCCB
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----cccc
Confidence            578899999999999999999999999999999998877766554 355544 455554 46999988873     2333


Q ss_pred             cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                        +++..+.++ -++|+..++..+.+. +..+.|.++|+.++.
T Consensus       110 --~~~~~~~l~-ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iP  148 (230)
T d1leha1         110 --NDFTIPQLK-AKVIAGSADNQLKDP-RHGKYLHELGIVYAP  148 (230)
T ss_dssp             --STTHHHHCC-CSEECCSCSCCBSSH-HHHHHHHHHTCEECC
T ss_pred             --ChHHhhccC-ccEEEecccCCCCCc-hHHHHHHhhCcEEEe
Confidence              233334443 356776666666555 346778888887763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.01  E-value=1e-05  Score=63.81  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC----C---CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL----G---AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~----g---~~~~~~~~~~~~~aDivi~~v  134 (358)
                      ....||+|||+|++|..+|..+...|.  ++.++|++++..+..    .+.    +   .....+ .+.+++||+|+++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEec
Confidence            334699999999999999999999886  799999987654322    111    1   112233 35578999999987


Q ss_pred             C
Q 018303          135 A  135 (358)
Q Consensus       135 p  135 (358)
                      .
T Consensus        97 g   97 (160)
T d1i0za1          97 G   97 (160)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.94  E-value=0.00013  Score=52.26  Aligned_cols=92  Identities=17%  Similarity=0.091  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHH
Q 018303          235 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLAL  314 (358)
Q Consensus       235 ~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~  314 (358)
                      .++..|++.|.+...-+..++|...+|++.|++..++.+.+....-..       +...  +...|+....+.||+..++
T Consensus         3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~-------~~~~--~pg~g~GG~ClpKD~~al~   73 (98)
T d1dlja1           3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIG-------MHYN--NPSFGYGGYSLPKDTKQLL   73 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTC-------SSSC--CCCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccC-------Cccc--cCCCCcccccCcccHHHHH
Confidence            478999999999999999999999999999999999988776532111       1111  1123556678999999874


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHH
Q 018303          315 GLAESVSQSTPIAAAANELYKVA  337 (358)
Q Consensus       315 ~~a~~~gi~~p~~~a~~~~~~~a  337 (358)
                        +.+.+++.++++++.+.-..-
T Consensus        74 --~~~~~~~~~ll~~~~~~N~~~   94 (98)
T d1dlja1          74 --ANYNNIPQTLIEAIVSSNNVR   94 (98)
T ss_dssp             --HHHTTSSCSHHHHHHHHHHHH
T ss_pred             --HHhcCCCcHHHHHHHHHHHhh
Confidence              667799999999998877653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=7.9e-06  Score=64.48  Aligned_cols=99  Identities=13%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHhC----C---CccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL----G---AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~----g---~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+...||+|||+|++|..+|..+...|.  ++.++|+++++++.    +.+.    +   .....+. +.+++||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            3444689999999999999999998875  79999998765432    2211    1   1123344 446899999998


Q ss_pred             eCChh---hH--------hhhhcccccccc---cCCCCCEEEEccCCChhHH
Q 018303          134 LADPE---SA--------MDVACGKHGAAS---GMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       134 vp~~~---~~--------~~~~~~~~~~~~---~l~~~~~vi~~s~~~~~~~  171 (358)
                      ...+.   .+        ..++   +++.+   ...++.+++.+++  |+|.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~---~~i~~~i~~~~p~~ivivvtN--PvDv  141 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIM---KAIVPGVIQNSPDCKIIVVTN--PVDI  141 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHH---HHHTTTHHHHSTTCEEEECSS--SHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHH---HHHHHHHhccCCCeEEEEeCC--cHHH
Confidence            74321   11        1122   22222   2357888888866  5543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.94  E-value=7.6e-06  Score=72.49  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh----CCCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      ...+++|||+|.++...++.+.. +. .+|.+|+|++++.+.+.+    .+.....+..+.+.+||+|+.|+|.   ...
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P  200 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKP  200 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---ccc
Confidence            44689999999999999999875 44 479999999988766543    3555566778889999999999863   444


Q ss_pred             hhcccccccccCCCCCEEEEccCCChh
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      ++  +   .+.+++|++|..++...|.
T Consensus       201 ~~--~---~~~l~~G~hv~~iGs~~p~  222 (320)
T d1omoa_         201 VV--K---AEWVEEGTHINAIGADGPG  222 (320)
T ss_dssp             CB--C---GGGCCTTCEEEECSCCSTT
T ss_pred             cc--c---hhhcCCCCeEeecCCcccc
Confidence            55  2   2468999999988776553

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.94  E-value=7.1e-06  Score=61.02  Aligned_cols=91  Identities=18%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhC-CCcc---CCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISL-GAKY---QPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~-g~~~---~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ++++++|.|||.|.+|..-++.|.++|.+|+++++..... ..+.+. ++..   ..+ ++.+..+++|+.++.......
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~d~~~n~   87 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATDDDTVNQ   87 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCSCHHHHH
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCCCHHHHH
Confidence            6788999999999999999999999999999998765432 122222 2221   112 234667888888885433333


Q ss_pred             hhhcccccccccCCCCCEEEEccC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+.       ...++..++||+..
T Consensus        88 ~i~-------~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          88 RVS-------DAAESRRIFCNVVD  104 (113)
T ss_dssp             HHH-------HHHHHTTCEEEETT
T ss_pred             HHH-------HHHHHcCCEEEeCC
Confidence            333       23445567777653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=2.2e-05  Score=60.88  Aligned_cols=93  Identities=15%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCC---------CccCCCHHHHhhcCCEEEEeeCChh-
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLG---------AKYQPSPDEVAASCDVTFAMLADPE-  138 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~aDivi~~vp~~~-  138 (358)
                      ||+|||+ |++|+.+|..+...|.  ++.++|.++.+.+...-..         .....+..+.+++||+|+++...+. 
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            7999995 9999999999998775  6888998765443322111         1123455678899999999864321 


Q ss_pred             --h------------HhhhhcccccccccCCCCCEEEEccCCChhH
Q 018303          139 --S------------AMDVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       139 --~------------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                        +            ++.++   +++.+. .|+.+++.+++  |+|
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~---~~i~~~-~p~~iiivvtN--PvD  121 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLT---AACAQH-CPDAMICIISN--PVN  121 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECSS--CHH
T ss_pred             CCCCcchHHHHHHHHHHHHH---HHHHhc-CCCeEEEEecC--chh
Confidence              1            22222   333333 67888887765  444

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.92  E-value=1.8e-05  Score=61.27  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh----------CC--CccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LG--AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----------~g--~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      +||+|||+|++|..+|..+...+. ++.++|+++++.+....          ..  +....+.++ ++++|+|+++...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeec
Confidence            489999999999999999887664 89999998775433211          11  222345555 6899999999853

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.3e-06  Score=68.58  Aligned_cols=67  Identities=24%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp  135 (358)
                      .++||.|+| .|.+|+.+++.|.+.|++|.++.|++++.......++.       -.+++.++++++|+|+.++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g   76 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence            457999998 59999999999999999999999998775543333221       12345677888999988875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.89  E-value=2.3e-05  Score=60.60  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh---CC------CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---LG------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~---~g------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +||+|||+|++|..+|..+...+.  ++.++|+++++.+....   +.      ........+.+++||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence            489999999999999999988775  79999998876543221   11      1122233455789999999853

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=2.5e-05  Score=58.17  Aligned_cols=103  Identities=22%  Similarity=0.314  Sum_probs=77.5

Q ss_pred             CeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      ++|+|||+    |+.|..+.+.|.+.|++|..++++.+..     .|...+.++.|+-...|++++++| +..+.+++  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l--   73 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA--   73 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeC-HHHHHHHH--
Confidence            48999995    7899999999999999999888765443     367778899998888999999997 77888888  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       ++..+. ....+++..+.    ..+++.+.+++.|+.++.
T Consensus        74 -~~~~~~-g~k~v~~~~g~----~~~~~~~~a~~~gi~vig  108 (116)
T d1y81a1          74 -KEAVEA-GFKKLWFQPGA----ESEEIRRFLEKAGVEYSF  108 (116)
T ss_dssp             -HHHHHT-TCCEEEECTTS----CCHHHHHHHHHHTCEEEC
T ss_pred             -HHHHhc-CCceEEeccch----hhHHHHHHHHHcCCEEEc
Confidence             555432 33345543322    234677888888888775

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.87  E-value=1.5e-05  Score=61.64  Aligned_cols=97  Identities=9%  Similarity=0.070  Sum_probs=61.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----Hh----CC----CccCCCHHHHhhcCCEEEEeeCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----IS----LG----AKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~----~g----~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      |||+|||+|++|..+|..+...|.  ++.++|+++++.+..    .+    ..    +....+. +.++++|+|+++...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            699999999999999999987663  699999987764321    11    11    1223344 578899999998743


Q ss_pred             hh-----------hHhhhhcc-cccccccCCCCCEEEEccCCChhHH
Q 018303          137 PE-----------SAMDVACG-KHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       137 ~~-----------~~~~~~~~-~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      +.           ....++.. -+++. ...|++++++.++  |.+.
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~-~~~p~aivivvtN--PvD~  123 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIV-ENAPESKILVVTN--PMDV  123 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHH-TTSTTCEEEECSS--SHHH
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHH-hhCCCcEEEEecC--ChHH
Confidence            21           11112100 02232 3457889998877  4443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.86  E-value=1.8e-05  Score=61.78  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh----------CCCcc-CCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKY-QPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----------~g~~~-~~~~~~~~~~aDivi~~vp  135 (358)
                      .||+|||+|.+|..+|..+...+. ++.++|+++++.+....          ..... ..+..+.++++|+|+++..
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            589999999999999988877663 78899998876543211          11111 1233456789999999985

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.86  E-value=9.7e-06  Score=65.41  Aligned_cols=117  Identities=15%  Similarity=0.030  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CC-----ccCCCHHHHhhcCCEEEEeeCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GA-----KYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~-----~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      ++.+++|.|||+|..+++++..|...| +|.+++|++++.+.+.+.     ..     ....++......+|++|.|+|.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI   93 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence            577889999999999999999998777 899999999887765431     00     1123445556789999999985


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ......-.. ..--...+.++.+++|+.-.+..+  .+.+..++.|..+++
T Consensus        94 g~~~~~~~~-~~~~~~~~~~~~~v~D~~y~p~~T--~l~~~a~~~G~~~i~  141 (177)
T d1nvta1          94 GMYPNIDVE-PIVKAEKLREDMVVMDLIYNPLET--VLLKEAKKVNAKTIN  141 (177)
T ss_dssp             TCTTCCSSC-CSSCSTTCCSSSEEEECCCSSSSC--HHHHHHHTTTCEEEC
T ss_pred             ccccccccc-chhhhhccCcccceeeecCCcHhH--HHHHHHHHCCCcccC
Confidence            432211110 011123567888999986544443  355566666655554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=8.9e-06  Score=61.91  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=76.7

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           69 LPGRIGFLGM----GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        69 ~~~~IgIIG~----G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      +.++|+|||+    |++|..+.+.|...| .+|+.+++..+..     .|...+.++.|+-...|++++++| +..+..+
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~   80 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT   80 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence            3468999997    899999999998766 6898888865443     367778899998888999999997 7888888


Q ss_pred             hcccccccccCCCCCEEEEccCCC-------hhHHHHHHHHHHhcCCeEec
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD-------GDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~-------~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +   ++..+.=-+..+++  +.+.       ...++++.+..++.++.+++
T Consensus        81 ~---~~~~~~g~~~~vi~--s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G  126 (129)
T d2csua1          81 L---IQCGEKGVKGVVII--TAGFGETGEEGKREEKELVEIAHKYGMRIIG  126 (129)
T ss_dssp             H---HHHHHHTCCEEEEC--CCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred             H---HHHHHcCCCEEEEe--cccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence            8   65554322333333  3321       12344566666777877764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=3.9e-06  Score=67.50  Aligned_cols=108  Identities=15%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~  143 (358)
                      ...++|||||+|.||+..++.+....  ..+.+++....+.  ..........+.+|++.+  .|+|++++|...+.+.+
T Consensus         5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~   82 (172)
T d1lc0a1           5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--LGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYI   82 (172)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC--CCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH--HHHhhccCcCCHHHHHhCCCcchhhhccccccccccc
Confidence            34468999999999999998886532  2244443322111  111112234578898864  68899999866554444


Q ss_pred             hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCe
Q 018303          144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGAS  184 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~  184 (358)
                      .       ..++.|..|+--  -.....+.+++.+..++.+..
T Consensus        83 ~-------~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          83 R-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             H-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             c-------cccccchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            3       234456554433  234567777888877776654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7.8e-05  Score=59.42  Aligned_cols=90  Identities=20%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCcc-----CCCHHHHhh--------cCCEEEEeeC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAA--------SCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~--------~aDivi~~vp  135 (358)
                      +.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...     ..+..+..+        ..|+|+.+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G  106 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG  106 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence            3589999999999999999999998 7999999999988877776532     224433322        4799999997


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .+...+..+       ..++++..++..+..
T Consensus       107 ~~~~~~~a~-------~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         107 AEASIQAGI-------YATRSGGTLVLVGLG  130 (171)
T ss_dssp             CHHHHHHHH-------HHSCTTCEEEECSCC
T ss_pred             CchhHHHHH-------HHhcCCCEEEEEecC
Confidence            544434333       567888888777654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=1.3e-05  Score=64.26  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             CCeEEEEcCChhHHHHHH--HHHHC----CCcEEEEcCCccchhhHHh--------C----CCccCCCHHHHhhcCCEEE
Q 018303           70 PGRIGFLGMGIMGTPMAQ--NLLKA----GCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~--~l~~~----g~~V~~~~~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi  131 (358)
                      .|||+|||+|++|...+-  .+...    +.++..+|+++++.+....        .    .+...+|.+|++++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            379999999999976432  23321    3589999999877653211        1    1334678999999999999


Q ss_pred             EeeC
Q 018303          132 AMLA  135 (358)
Q Consensus       132 ~~vp  135 (358)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=4.4e-05  Score=60.06  Aligned_cols=76  Identities=24%  Similarity=0.346  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +..+++|.|||-+. +|+.++..|...|..|+.++...              .++.+..+++|+||.++..+    +++ 
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p----~~i-   94 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKP----GFI-   94 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCT----TCB-
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCc----ccc-
Confidence            57889999999987 89999999999999999987542              35667789999999999754    334 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                       .   .+++++|+++||++.
T Consensus        95 -~---~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          95 -P---GDWIKEGAIVIDVGI  110 (166)
T ss_dssp             -C---TTTSCTTCEEEECCC
T ss_pred             -c---ccccCCCcEEEecCc
Confidence             1   236799999999964

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7e-05  Score=59.30  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++++++|.|||-+. +|+.++..|...|..|+.++.+.              .++.+..+++|++|.+++.+.    ++ 
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~----~i-   96 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPE----MV-   96 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTT----CB-
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccccc----cc-
Confidence            67889999999976 89999999999999999998743              245677889999999997543    23 


Q ss_pred             ccccccccCCCCCEEEEccCCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                       .   ...+++|+++||++...
T Consensus        97 -~---~~~vk~g~iviDvgi~~  114 (170)
T d1a4ia1          97 -K---GEWIKPGAIVIDCGINY  114 (170)
T ss_dssp             -C---GGGSCTTCEEEECCCBC
T ss_pred             -c---cccccCCCeEeccCccc
Confidence             1   23589999999996644

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.74  E-value=9.8e-05  Score=58.66  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHH---h-----hcCCEEEEee
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEV---A-----ASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~---~-----~~aDivi~~v  134 (358)
                      +.+|.|+|+|.||...++.++..|.+|+++++++++.+.+.+.|...       ..+..+.   +     ..+|+|+-++
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~  106 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS  106 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence            45899999999999999999999999999999999888777765421       1122222   1     2379999998


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ..+......+       ..++++..++..+..
T Consensus       107 g~~~~~~~a~-------~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         107 GNEKCITIGI-------NITRTGGTLMLVGMG  131 (170)
T ss_dssp             CCHHHHHHHH-------HHSCTTCEEEECSCC
T ss_pred             CChHHHHHHH-------HHHhcCCceEEEecC
Confidence            6443344443       567788888877543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=9.8e-06  Score=64.98  Aligned_cols=112  Identities=19%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      ...+++|.|+|+|..+++++..|...+.+|.+++|+.++.+.+.+.     .+......+..+.++|+||.|+|......
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~   94 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGG   94 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-----
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccc
Confidence            4567899999999999999999998888999999999887776542     11111111223567999999998653221


Q ss_pred             hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      . .   ......++++.+++|..=..|..+ .+....++.|.
T Consensus        95 ~-~---~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~  131 (171)
T d1p77a1          95 T-A---SVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGL  131 (171)
T ss_dssp             ------CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTC
T ss_pred             c-c---chhhhhhcccceeeeeeccCcccH-HHHHHHHHcCC
Confidence            1 1   112233556778888755444333 34444455543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.72  E-value=4.8e-05  Score=58.76  Aligned_cols=64  Identities=14%  Similarity=0.305  Sum_probs=47.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhh----HHhC----C---CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP----LISL----G---AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~----g---~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .||+|||+|++|..+|..+...|.  ++.++|+++++.+.    +.+.    +   +....+. +.+++||+|+++.-
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            389999999999999999988775  79999998866442    1211    1   1223344 45789999999974

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=3.5e-05  Score=61.00  Aligned_cols=65  Identities=12%  Similarity=0.035  Sum_probs=47.5

Q ss_pred             CeEEEEcCChhHHHHHHHH--HHC----CCcEEEEcCCccchhhHHh-------C--CCccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLGMGIMGTPMAQNL--LKA----GCDVTVWNRTKSKCDPLIS-------L--GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l--~~~----g~~V~~~~~~~~~~~~~~~-------~--g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |||+|||+|+.|...+-..  ...    +.++.++|+++++.+...+       .  .+...++..+.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            6899999999997777542  221    3579999999887654322       1  13445678899999999999984

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.67  E-value=8.4e-05  Score=59.55  Aligned_cols=68  Identities=10%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCccchhhH------------------HhCCCccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPL------------------ISLGAKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~aDiv  130 (358)
                      -||||.|+|+||+.+++.+... +++|.. .|+.+......                  .+.++....++.++..++|+|
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            3899999999999999999875 467665 45554322111                  112344455777777888999


Q ss_pred             EEeeCChh
Q 018303          131 FAMLADPE  138 (358)
Q Consensus       131 i~~vp~~~  138 (358)
                      +.|+|...
T Consensus        82 iecTG~f~   89 (178)
T d1b7go1          82 VDTTPNGV   89 (178)
T ss_dssp             EECCSTTH
T ss_pred             EECCCCcC
Confidence            99998543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.66  E-value=0.00014  Score=61.23  Aligned_cols=111  Identities=14%  Similarity=0.026  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhH----HHHHHHHHHC--CCcEE-EEcCCccchhhHHhC-C---CccCCCHHHHhhc--CCEEEEee
Q 018303           68 ELPGRIGFLGMGIMG----TPMAQNLLKA--GCDVT-VWNRTKSKCDPLISL-G---AKYQPSPDEVAAS--CDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG----~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~--aDivi~~v  134 (358)
                      ...+||||||+|.+|    ......+...  +++|. ++|+++++.+.+.+. +   ...+++.++++++  .|+|++++
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence            445799999999854    4445556553  46766 689998877665442 3   3456799999864  78999999


Q ss_pred             CChhhHhhhhcccccccc--cCCCCCEEEEc--cCCChhHHHHHHHHHHhc
Q 018303          135 ADPESAMDVACGKHGAAS--GMGPGKGYVDV--STVDGDTSKLINGHIKAT  181 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~--~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~  181 (358)
                      |...+.+.+.   ..+..  ..+.++.|+.-  -.....+.+.+.+..+++
T Consensus        94 p~~~h~~~~~---~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~  141 (237)
T d2nvwa1          94 KVPEHYEVVK---NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR  141 (237)
T ss_dssp             CHHHHHHHHH---HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CCcchhhHHH---HHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhc
Confidence            8655555443   22211  12344444433  122445566677766543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=5.5e-05  Score=60.20  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC------CH-HHHhhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SP-DEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~------~~-~~~~~~aDivi~~vp~~~~~~  141 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|+++++++++.+.+++.|...+-      +. +......|+++.++...... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            34589999999999999999999999999999999998888777653211      11 12233479999887532211 


Q ss_pred             hhhcccccccccCCCCCEEEEcc
Q 018303          142 DVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                       .+   ...+..++++..++.++
T Consensus       106 -~~---~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 -DF---NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CT---TTGGGGEEEEEEEEECC
T ss_pred             -hH---HHHHHHhhccceEEEec
Confidence             12   22344556666666554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=3.5e-05  Score=62.20  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence            35689999999999999999999997 79999999988877766554

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=8.4e-05  Score=56.17  Aligned_cols=84  Identities=18%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH  148 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~  148 (358)
                      |||+|+|+ |+||+.+++.+.+.|+++.+ +|++..                 +.+.++|+||=.. .+..+...+   +
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS-~p~~~~~~l---~   59 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFS-SPEALPKTV---D   59 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECS-CGGGHHHHH---H
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEec-CHHHHHHHH---H
Confidence            68999996 99999999999999998764 444321                 2245689988887 577777777   3


Q ss_pred             cccccCCCCCEEEEccCCChhHHHHHHHHH
Q 018303          149 GAASGMGPGKGYVDVSTVDGDTSKLINGHI  178 (358)
Q Consensus       149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l  178 (358)
                      ..   ++.+.-+|-.++|-..+..+..+.+
T Consensus        60 ~~---~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          60 LC---KKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             HH---HHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             HH---HhcCCCEEEEcCCCCHHHHHHHHHH
Confidence            22   3445566666666554443433333

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.53  E-value=7.5e-05  Score=59.22  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             CeEEEEcCChhHHHHH--HHHHHC-C---CcEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGMGIMGTPMA--QNLLKA-G---CDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a--~~l~~~-g---~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~  132 (358)
                      .||.|||+|+.|...+  ..+... .   -++.++|.++++++....        .+    +....+..|++++||+||+
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            4899999999987533  333322 2   379999999887653221        11    3346688899999999999


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      +.-
T Consensus        84 tag   86 (167)
T d1u8xx1          84 HIR   86 (167)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.52  E-value=0.00016  Score=57.56  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=45.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CcEEE-EcCCccch-hhHHh------------------CCCccCCCHHHHhhcCCE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-CDVTV-WNRTKSKC-DPLIS------------------LGAKYQPSPDEVAASCDV  129 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~~-~~~~~~~~-~~~~~------------------~g~~~~~~~~~~~~~aDi  129 (358)
                      ++|||-|+|+||+.+.+.+...+ .+|.. .++++... ..+..                  .++....+..++.+++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999987765 55554 45544321 11111                  123333456677788999


Q ss_pred             EEEeeCChhhH
Q 018303          130 TFAMLADPESA  140 (358)
Q Consensus       130 vi~~vp~~~~~  140 (358)
                      |+.|+|.....
T Consensus        82 ViEcTG~f~~~   92 (171)
T d1cf2o1          82 VIDCTPEGIGA   92 (171)
T ss_dssp             EEECCSTTHHH
T ss_pred             EEEccCCCCCH
Confidence            99998865433

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.50  E-value=0.00038  Score=53.64  Aligned_cols=105  Identities=14%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CC---cEEEEcCCcc--chhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA-GC---DVTVWNRTKS--KCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~-g~---~V~~~~~~~~--~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~  142 (358)
                      |||||||+ |..|+.+.+.|.+. .|   ++..+..+..  +...+... .........+.++++|++++|+| ......
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp-~~~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQG-GSYTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSC-HHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecC-chHHHH
Confidence            68999977 99999999987653 33   4444332211  11111111 01111122345689999999997 555555


Q ss_pred             hhcccccccccCCCCCEEEEccCCC-----------hhHHHHHHHHHHh
Q 018303          143 VACGKHGAASGMGPGKGYVDVSTVD-----------GDTSKLINGHIKA  180 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~~~-----------~~~~~~l~~~l~~  180 (358)
                      +.   +.+.+. ....+|||.|...           .++.+.+.+++++
T Consensus        80 ~~---~~l~~~-g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~  124 (147)
T d1mb4a1          80 VY---PALRQA-GWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHH  124 (147)
T ss_dssp             HH---HHHHHT-TCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHT
T ss_pred             Hh---HHHHHc-CCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHc
Confidence            55   444322 3345799997753           2345566666544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00013  Score=53.57  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ....||||||.|.+|+.++....+.|+++.++|++++.
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            34568999999999999999999999999999998764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.50  E-value=0.00013  Score=56.01  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|||+    ++.|..+++.|..+|++|+.+++..+..     .|...+.++.|+-...|++++++| +..+..++ 
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~-   91 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYV-   91 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHH-
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeC-HHHHHHHH-
Confidence            468999996    5799999999999999999888765432     256778899998888999999997 78888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                        ++..+. ....+++..+.-    .+.+.+.+++.|+.++.
T Consensus        92 --~e~~~~-g~k~v~~~~G~~----~ee~~~~a~~~gi~vig  126 (139)
T d2d59a1          92 --EQAIKK-GAKVVWFQYNTY----NREASKKADEAGLIIVA  126 (139)
T ss_dssp             --HHHHHH-TCSEEEECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred             --HHHHHh-CCCEEEEecccc----CHHHHHHHHHCCCEEEc
Confidence              555543 333444433322    23466677778887775

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00025  Score=54.67  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHH-HC--CCcEEEEcCCccchhh----HHhCC------CccCCCHHHHhhcCCEEEEeeC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLL-KA--GCDVTVWNRTKSKCDP----LISLG------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~-~~--g~~V~~~~~~~~~~~~----~~~~g------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      |||+||| .|++|+.+|..+. ..  +.++..+|..+ ..+.    +.+..      ....++..+.++++|+|+++.-
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence            6899999 5999999999875 33  46899999864 3321    11111      0112333456889999999974

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=9e-05  Score=58.87  Aligned_cols=90  Identities=20%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC---CCHHH---HhhcCCEEEEeeCChhhHhh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDE---VAASCDVTFAMLADPESAMD  142 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~---~~~~~---~~~~aDivi~~vp~~~~~~~  142 (358)
                      .+.+|.|+|+|.+|...++.++..|.++++.++++++.+.+.+.|...+   .+.+.   ..+..|+++.++..+.....
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~  109 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  109 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHH
Confidence            3468999999999999999999999999999998888777766664321   22222   22458999999964433444


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+       ..++++..++..+.
T Consensus       110 ~~-------~~l~~~G~iv~~G~  125 (168)
T d1uufa2         110 FT-------TLLKRDGTMTLVGA  125 (168)
T ss_dssp             HH-------TTEEEEEEEEECCC
T ss_pred             HH-------HHHhcCCEEEEecc
Confidence            43       45667777776653

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.48  E-value=0.00015  Score=57.70  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CcEE-EEcCCcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-CDVT-VWNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~-~~~~~~~  104 (358)
                      +||||.|+|+||+.+.+.+.... ++|. +.|.++.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~   38 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD   38 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence            58999999999999999997643 5554 4565543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00056  Score=52.67  Aligned_cols=106  Identities=11%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC-CC---cEEEEcCCccchhh--HHhCCCccC-CCHHHHhhcCCEEEEeeCChhhHh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA-GC---DVTVWNRTKSKCDP--LISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM  141 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~-g~---~V~~~~~~~~~~~~--~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~  141 (358)
                      +++|||||+ |..|+.+.+.|.+. .+   ++..+..+......  ......... ....+.++++|++++|+| ....+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~-~~~s~   79 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQG-GDYTN   79 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSC-HHHHH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecC-chHHH
Confidence            358999988 99999999877653 33   45555443322111  111111111 112245689999999997 44444


Q ss_pred             hhhcccccccccCCCCCEEEEccCCC-----------hhHHHHHHHHHHh
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTVD-----------GDTSKLINGHIKA  180 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~~-----------~~~~~~l~~~l~~  180 (358)
                      ...   +.+.+ -..+.+|||.|+..           .++.+.+..++++
T Consensus        80 ~~~---~~~~~-~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~  125 (146)
T d1t4ba1          80 EIY---PKLRE-SGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNN  125 (146)
T ss_dssp             HHH---HHHHH-TTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHT
T ss_pred             Hhh---HHHHh-cCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHc
Confidence            444   33322 23346788887652           2345566666543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=0.00016  Score=55.26  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=79.3

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM----GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~----G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .++|+|||+    ++.|..+.+.|...|+++..+..++.. +..  .|...+.++.++-...|++++++| +..+..++ 
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v-   87 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHL-   87 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH-
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEecc-HHHHHHHH-
Confidence            468999998    789999999999999999999876532 111  256677888888888999999997 78888888 


Q ss_pred             ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                        ++..+ +....+++..  |..  .+++.+.+++.|+.++.
T Consensus        88 --~~~~~-~g~k~i~~q~--G~~--~~e~~~~a~~~Gi~vV~  122 (136)
T d1iuka_          88 --PEVLA-LRPGLVWLQS--GIR--HPEFEKALKEAGIPVVA  122 (136)
T ss_dssp             --HHHHH-HCCSCEEECT--TCC--CHHHHHHHHHTTCCEEE
T ss_pred             --HHHHh-hCCCeEEEec--Ccc--CHHHHHHHHHcCCEEEc
Confidence              55544 3455666633  222  34577888888888774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.44  E-value=8.6e-05  Score=59.43  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=57.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-----CCHHHHhh------cCCEEEEeeCCh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA------SCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~------~aDivi~~vp~~  137 (358)
                      +.+|.|+|+|.+|...++.++..|. +|++.|+++++.+..++.|...+     .+..+.+.      ..|+||.+++.+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~  107 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGS  107 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCH
Confidence            4589999999999999999999996 79999999888777766664321     12222211      167777777543


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEcc
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ...+..+       ..++++..++.++
T Consensus       108 ~~~~~a~-------~~~~~~G~iv~~G  127 (174)
T d1jqba2         108 ETLSQAV-------KMVKPGGIISNIN  127 (174)
T ss_dssp             THHHHHH-------HHEEEEEEEEECC
T ss_pred             HHHHHHH-------HHHhcCCEEEEEe
Confidence            3333333       3345555555543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00012  Score=57.75  Aligned_cols=95  Identities=25%  Similarity=0.253  Sum_probs=63.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccch-----hh---HHhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKC-----DP---LISLGAKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~-----~~---~~~~g~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      .+||+|+|+ |+||+.+++.+.+. ++++. ++++.....     ..   ....++....+++++.+.+|+||=.. .+.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs-~p~   82 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT-RPE   82 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-CHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-cHH
Confidence            368999996 99999999998775 66654 456543211     00   11124566778888899999998888 577


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      .+...+   +.   ..+.+.-+|--++|...++
T Consensus        83 ~~~~~~---~~---a~~~~~~~ViGTTG~~~~~  109 (162)
T d1diha1          83 GTLNHL---AF---CRQHGKGMVIGTTGFDEAG  109 (162)
T ss_dssp             HHHHHH---HH---HHHTTCEEEECCCCCCHHH
T ss_pred             HHHHHH---HH---HHhccceeEEecCCCcHHH
Confidence            777776   32   2345666666666654443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00017  Score=50.68  Aligned_cols=64  Identities=22%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCC-CHHHHhhcCCEEEEee
Q 018303           71 GRIGFLGMGIMGT-PMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML  134 (358)
Q Consensus        71 ~~IgIIG~G~iG~-~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~v  134 (358)
                      |||=|||.|.+|- ++|+.|...|++|.++|+... ..+.+.+.|+.... ...+-+.++|+||..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            6899999999997 789999999999999998753 34567777765532 1223356788777664

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.38  E-value=0.00042  Score=58.20  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEc-CCc-------cchhhHH---------------h-CCCccCCCHHH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN-RTK-------SKCDPLI---------------S-LGAKYQPSPDE  122 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~-~~~-------~~~~~~~---------------~-~g~~~~~~~~~  122 (358)
                      ++.++||.|-|+|++|+.+|+.|.+.|.+|+.++ .+.       -..+.+.               . .+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            5778899999999999999999999999987644 221       1111111               1 13333444555


Q ss_pred             Hhh-cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          123 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       123 ~~~-~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ++. +|||++-|-.     .+.+  +++..+.++ -++|+-.++++. +.++ .+.|.++++.++.
T Consensus       108 i~~~~~DIliPcA~-----~~~I--~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~~~P  163 (242)
T d1v9la1         108 IFKLDVDIFVPAAI-----ENVI--RGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVVVVP  163 (242)
T ss_dssp             GGGCCCSEEEECSC-----SSCB--CTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCEEEC
T ss_pred             hccccccEEeecch-----hccc--cHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeEEeC
Confidence            554 6999988873     3344  333344443 457776667665 4444 5788888887763

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00018  Score=56.93  Aligned_cols=92  Identities=10%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchh-hH-----HhCCC-----ccCCCHHHHhhcCCEEEEee
Q 018303           67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCD-PL-----ISLGA-----KYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~-~~-----~~~g~-----~~~~~~~~~~~~aDivi~~v  134 (358)
                      +++++++.|||-+++ |+.+|..|...|..|+.++.+..... ..     ...+.     ...+.+.+...++|+||.++
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsav  105 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  105 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEcc
Confidence            688899999999875 99999999999999999886532110 00     00000     00122566777899999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      |.+..   .+  .   .+.+++|+++||.+..
T Consensus       106 G~p~~---~i--~---~d~ik~GavvIDvGi~  129 (171)
T d1edza1         106 PSENY---KF--P---TEYIKEGAVCINFACT  129 (171)
T ss_dssp             CCTTC---CB--C---TTTSCTTEEEEECSSS
T ss_pred             CCCcc---cc--C---hhhcccCceEeecccc
Confidence            85421   12  1   2357899999999754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.34  E-value=0.00011  Score=59.79  Aligned_cols=44  Identities=20%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      ++++++|-|.| .|.||..+++.|++.|++|++++|+.++.+.+.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            78889999998 599999999999999999999999988766554

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=0.00024  Score=56.39  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=44.4

Q ss_pred             CeEEEEcCChhHH--HHHHHHHHC----CCcEEEEcCCccc--hhhHH--------hCC----CccCCCHHHHhhcCCEE
Q 018303           71 GRIGFLGMGIMGT--PMAQNLLKA----GCDVTVWNRTKSK--CDPLI--------SLG----AKYQPSPDEVAASCDVT  130 (358)
Q Consensus        71 ~~IgIIG~G~iG~--~~a~~l~~~----g~~V~~~~~~~~~--~~~~~--------~~g----~~~~~~~~~~~~~aDiv  130 (358)
                      +||.|||+|+.|.  .++..+...    .-++..+|+++++  .+.+.        ..+    +..++|..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            5899999998774  444444432    1388999998754  22211        112    23456888889999999


Q ss_pred             EEeeCC
Q 018303          131 FAMLAD  136 (358)
Q Consensus       131 i~~vp~  136 (358)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999953

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.00016  Score=51.58  Aligned_cols=66  Identities=23%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCChhH-HHHHHHHHHCCCcEEEEcCCc-cchhhHHhCCCccCC-CHHHHhhcCCEEEEee
Q 018303           69 LPGRIGFLGMGIMG-TPMAQNLLKAGCDVTVWNRTK-SKCDPLISLGAKYQP-SPDEVAASCDVTFAML  134 (358)
Q Consensus        69 ~~~~IgIIG~G~iG-~~~a~~l~~~g~~V~~~~~~~-~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~v  134 (358)
                      ..++|=|||.|.+| +++|+.|.+.|++|.++|+.. ...+.+.+.|+.... ...+.+++.|+||..-
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            45799999999999 778999999999999999863 234455566654321 2233356677766654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.27  E-value=0.00018  Score=55.54  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=44.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccc--hhh----HHhC------CCcc---CCCHHHHhhcCCEEEE
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSK--CDP----LISL------GAKY---QPSPDEVAASCDVTFA  132 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~--~~~----~~~~------g~~~---~~~~~~~~~~aDivi~  132 (358)
                      |||+|||+ |++|+.+|..+...|.  ++.++|++++.  .+.    +.+.      ....   .++..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            68999995 9999999999998884  89999987532  221    1110      1111   1223356789999999


Q ss_pred             ee
Q 018303          133 ML  134 (358)
Q Consensus       133 ~v  134 (358)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.26  E-value=8.2e-05  Score=57.55  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC---cEEEEcCCccchhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      .|+|||||+ |..|+.+.+.|.+.+|   ++.....+....+.+...  .........+...++|++++++| .......
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p-~~~s~~~   80 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAA-AEVSRAH   80 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSC-HHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCC-cchhhhh
Confidence            479999988 9999999999986554   555443322222211111  01111112234678999999997 4444444


Q ss_pred             hcccccccccCCCCCEEEEccCCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTVD  167 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~~  167 (358)
                      .   ..+   ...|..|||.|...
T Consensus        81 ~---~~~---~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          81 A---ERA---RAAGCSVIDLSGAL   98 (144)
T ss_dssp             H---HHH---HHTTCEEEETTCTT
T ss_pred             c---ccc---ccCCceEEeechhh
Confidence            4   322   45789999987754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.23  E-value=0.00019  Score=56.74  Aligned_cols=45  Identities=22%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      +.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga   72 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA   72 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence            458999999999999999999999999999999988887777664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.19  E-value=0.00025  Score=55.93  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+++.|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga   72 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA   72 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc
Confidence            3468999999999999999999999999999999988887777664

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.0011  Score=52.66  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh-------CCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-------LGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ++||||+|+ |..|+.+.+.|..+- +++.....+...-+.+.+       .-.....+.+++.+++|+|++++|.... 
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-   79 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-   79 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-
Confidence            358999987 999999999998753 455543222222222211       1111234667777889999999986543 


Q ss_pred             hhhhcccccccccCCCCCEEEEccCCChhHHHHHHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING  176 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~  176 (358)
                      ...+   ..     ..+..|||.|...--+.....+
T Consensus        80 ~~~~---~~-----~~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 YDLV---RE-----LKGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             HHHH---TT-----CCSCEEEESSSTTTCSSHHHHH
T ss_pred             HHHH---Hh-----hccceEEecCccccccchhhHH
Confidence            4444   21     2578999999876554333333

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00036  Score=58.87  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+.++++-|-|. +.||+.+|+.|++.|.+|.+++|+.++++.+.++       +.+  ...++..+.+  .+....+.+
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dvs~~~~v~~~   74 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKG--LGAKVHTFVVDCSNREDIYSS   74 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHH
Confidence            577778888877 5599999999999999999999998877665431       222  1234444444  344566667


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +   +.+.+...+=.++||.+..
T Consensus        75 ~---~~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          75 A---KKVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             H---HHHHHHTCCCSEEEECCCC
T ss_pred             H---HHHHHHcCCCceeEeeccc
Confidence            6   6666666666788887554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00016  Score=49.10  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=32.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      |+|||||.|..|+.++......|++|.++|++++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            58999999999999999999999999999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.09  E-value=0.00032  Score=55.91  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCCcc-----CCCHHHHhh-----cCCEEEEeeCCh
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKY-----QPSPDEVAA-----SCDVTFAMLADP  137 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~-----~aDivi~~vp~~  137 (358)
                      .+.+|.|+|+|.+|...++.++..|.+ |++.++++++.+.+++.|...     ..+..+.++     ..|+|+.|+...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            345899999999999999999998875 456788888877777666431     123333322     268888888544


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEcc
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ...+..+       ..++++..++.++
T Consensus       108 ~~~~~~~-------~~~~~~G~i~~~G  127 (174)
T d1f8fa2         108 EILKQGV-------DALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHH-------HTEEEEEEEEECC
T ss_pred             HHHHHHH-------hcccCceEEEEEe
Confidence            3333333       3455666666554

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.08  E-value=0.0014  Score=56.50  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---cc-ccchhhhccccccccCCCCCCCchhh----
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ---GA-ISAPMYSLKGPSMIESLYPTAFPLKH----  305 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~---~~-~~s~~~~~~~~~~~~~~~~~~~~~~~----  305 (358)
                      |+++.+||+.|.+.++++++++|++.+++..|.+.+++.+++..   +. ..|++++.....+...+-....-++.    
T Consensus         1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~   80 (300)
T d1pgja1           1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR   80 (300)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred             CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence            68999999999999999999999999999999999888777664   22 35665554322222222111111111    


Q ss_pred             --HHHHHHHHHHHHHhcCCCchHHHHHH
Q 018303          306 --QQKDLRLALGLAESVSQSTPIAAAAN  331 (358)
Q Consensus       306 --~~kd~~~~~~~a~~~gi~~p~~~a~~  331 (358)
                        ....-.+.+..+-++|+|+|++.++.
T Consensus        81 a~~kGTG~Wt~~~al~~gvp~p~i~~Av  108 (300)
T d1pgja1          81 IGSKGTGLWSAQEALEIGVPAPSLNMAV  108 (300)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence              12234677888999999999987664

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.06  E-value=0.0017  Score=51.56  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC------CC-HHHHh-----hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ------PS-PDEVA-----ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~------~~-~~~~~-----~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. +|++.|+++++.+...+.|...+      ++ .+++.     ...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            34589999999999999999999995 79999999999888777665421      11 12221     24888888886


Q ss_pred             ChhhHhhhh
Q 018303          136 DPESAMDVA  144 (358)
Q Consensus       136 ~~~~~~~~~  144 (358)
                      .+......+
T Consensus       109 ~~~~~~~a~  117 (176)
T d1d1ta2         109 HLETMIDAL  117 (176)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            554444444

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.06  E-value=0.0014  Score=52.07  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCC-------HHHHh-----hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPS-------PDEVA-----ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. .|++.|+++++.+..++.|...+.+       ..+..     ...|+++.|+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            34589999999999999999999997 5888999998888777776532211       12222     23799999986


Q ss_pred             ChhhHhhhh
Q 018303          136 DPESAMDVA  144 (358)
Q Consensus       136 ~~~~~~~~~  144 (358)
                      .+...+..+
T Consensus       108 ~~~~~~~a~  116 (174)
T d1e3ia2         108 TAQTLKAAV  116 (174)
T ss_dssp             CHHHHHHHH
T ss_pred             cchHHHHHH
Confidence            554444443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00033  Score=54.69  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=43.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCC--ccchhhHH---hC-------CCccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRT--KSKCDPLI---SL-------GAKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~--~~~~~~~~---~~-------g~~~~~~~~~~~~~aDi  129 (358)
                      .+||.|||+ |.+|+.++..|...+.       ....++..  .+..+...   +.       .....++..+.++++|+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            469999997 9999999999987542       12233332  22222211   11       23345677888999999


Q ss_pred             EEEeeC
Q 018303          130 TFAMLA  135 (358)
Q Consensus       130 vi~~vp  135 (358)
                      |+++.-
T Consensus        84 ViitaG   89 (154)
T d1y7ta1          84 ALLVGA   89 (154)
T ss_dssp             EEECCC
T ss_pred             EEeecC
Confidence            999873

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.04  E-value=0.0015  Score=56.22  Aligned_cols=98  Identities=14%  Similarity=0.076  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhccccccccCCCCCCCchh-----
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKGPSMIESLYPTAFPLK-----  304 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~-----  304 (358)
                      |+++.+||+.|.+.++++++++|++.++++ .|.+.+++.+++..   +...|++++.....+...+......++     
T Consensus         1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~   80 (297)
T d2pgda1           1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS   80 (297)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred             CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence            689999999999999999999999999987 58988888887664   555566666433333222211001111     


Q ss_pred             -hHHHHHHHHHHHHHhcCCCchHHHHHH
Q 018303          305 -HQQKDLRLALGLAESVSQSTPIAAAAN  331 (358)
Q Consensus       305 -~~~kd~~~~~~~a~~~gi~~p~~~a~~  331 (358)
                       .....-.+.++.|-++|+|+|++.++.
T Consensus        81 a~~kGTG~Wt~~~Al~lgvp~p~I~~Av  108 (297)
T d2pgda1          81 AGQKGTGKWTAISALEYGVPVTLIGEAV  108 (297)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHcCCCchHHHHHH
Confidence             111224678899999999999987764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.00081  Score=51.14  Aligned_cols=92  Identities=22%  Similarity=0.303  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccch-------hhHH----hCCCccCCCHHHHhh
Q 018303           67 DELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKC-------DPLI----SLGAKYQPSPDEVAA  125 (358)
Q Consensus        67 ~~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~~~----~~g~~~~~~~~~~~~  125 (358)
                      ....++|+|+|+-          +-...++..|...|.+|.+||+.-+..       +...    ..+....+++.++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            3456799999974          568889999999999999999742211       1111    112445679999999


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++|+|+++++.+ +.+.+.       ..+.++.+|+|+-+.
T Consensus        90 ~~D~ivi~t~h~-~f~~l~-------~~~~~~~~I~D~~~~  122 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LFVDLV-------NKTPSGKKLVDLVGF  122 (136)
T ss_dssp             HCSEEEECSCCG-GGHHHH-------HSCCTTCEEEESSSC
T ss_pred             hceEEEEEeCCH-HHHHHH-------HHhcCCCEEEECCCC
Confidence            999999999754 434433       346678899998654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.94  E-value=0.00063  Score=52.98  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=45.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccch--hhHH----hC------CCccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSKC--DPLI----SL------GAKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~~--~~~~----~~------g~~~~~~~~~~~~~aDi  129 (358)
                      .+||.|||+ |++|..++..|...+.       ++..+|.+....  +.+.    ..      ......+..+.++++|+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            469999995 9999999999976432       356677654322  1111    11      12345677889999999


Q ss_pred             EEEeeC
Q 018303          130 TFAMLA  135 (358)
Q Consensus       130 vi~~vp  135 (358)
                      ||++..
T Consensus        83 VVitag   88 (154)
T d5mdha1          83 AILVGS   88 (154)
T ss_dssp             EEECCS
T ss_pred             EEEecc
Confidence            999874

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.92  E-value=0.003  Score=53.95  Aligned_cols=111  Identities=10%  Similarity=0.077  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEc-CC----------ccchhhHHhC-C-Cc----cCCCHHHHhh-cCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN-RT----------KSKCDPLISL-G-AK----YQPSPDEVAA-SCD  128 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~-~~----------~~~~~~~~~~-g-~~----~~~~~~~~~~-~aD  128 (358)
                      .+.++||.|-|+|++|...|+.|.+.|.+|+.++ .+          .+.+...... + +.    ...+.++++. +||
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  112 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCD  112 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCcc
Confidence            5778899999999999999999999999987653 21          1122222221 1 00    0112234443 799


Q ss_pred             EEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      |++-|.     +.+.+  +.+..+.++ -++|+.-++++. +.++ .+.|.++|+.++.
T Consensus       113 IliPaA-----~~~~I--~~~~a~~l~-ak~I~EgAN~P~-t~eA-~~~L~~~gI~viP  161 (293)
T d1hwxa1         113 ILIPAA-----SEKQL--TKSNAPRVK-AKIIAEGANGPT-TPQA-DKIFLERNIMVIP  161 (293)
T ss_dssp             EEEECS-----SSSCB--CTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred             EEeecc-----ccccc--cHHHHHHHh-hCEEeccCCCCC-Ccch-HHHHHHCCCEEeC
Confidence            988776     33444  344444553 356776666664 4434 5778888887764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.91  E-value=0.00076  Score=57.27  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|.| .+.||+++|+.|++.|++|.+.+|++++.+...+.       +.+.  ..++..+.+  ....+++.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~D~s~~~~~~~~   73 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREK--GLNVEGSVCDLLSRTERDKL   73 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCCceEEEeecCCHHHHHHH
Confidence            46778999997 58899999999999999999999998766554321       1111  122323333  345566666


Q ss_pred             hcccccccccC-CCCCEEEEccCC
Q 018303          144 ACGKHGAASGM-GPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l-~~~~~vi~~s~~  166 (358)
                      +   +++.+.. .+-.++||.+..
T Consensus        74 ~---~~~~~~~~g~idilinnag~   94 (258)
T d1ae1a_          74 M---QTVAHVFDGKLNILVNNAGV   94 (258)
T ss_dssp             H---HHHHHHTTSCCCEEEECCCC
T ss_pred             H---HHHHHHhCCCcEEEeccccc
Confidence            6   5555554 356678876443

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0018  Score=48.27  Aligned_cols=83  Identities=18%  Similarity=0.056  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCch
Q 018303          250 MMATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTP  325 (358)
Q Consensus       250 ~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p  325 (358)
                      +..++.|+..++++.|++  .+...+.+....   .......++|.+ |...|  -+++.+   .+.++++++++|+++|
T Consensus        37 ~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~---~~~~~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~gi~tP  109 (124)
T d1ks9a1          37 IMQICEEVAAVIEREGHHTSAEDLRDYVMQVI---DATAENISSMLQ-DIRALRHTEIDYI---NGFLLRRARAHGIAVP  109 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---HHTTTCCCHHHH-HHHTTCCCSGGGT---HHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---hccCCCCChHHH-HHHcCCcchHHHH---HHHHHHHHHHhCCCCc
Confidence            346778999999999875  344433333210   000111233332 22222  235555   7899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018303          326 IAAAANELYKVAKS  339 (358)
Q Consensus       326 ~~~a~~~~~~~a~~  339 (358)
                      +++.++++++...+
T Consensus       110 ~~~~l~~lik~~E~  123 (124)
T d1ks9a1         110 ENTRLFEMVKRKES  123 (124)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999876543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.81  E-value=0.0032  Score=49.85  Aligned_cols=75  Identities=21%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCC-------HHHHhh-----cCCEEEEeeCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPS-------PDEVAA-----SCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~-----~aDivi~~vp~  136 (358)
                      +.+|.|+|+|.+|...++.++..|. +|++.|+++++.+...+.|...+-+       .++...     ..|+++.++..
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~  107 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR  107 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCC
Confidence            4589999999999999999999986 6889999999988888777543211       222221     37888888865


Q ss_pred             hhhHhhhh
Q 018303          137 PESAMDVA  144 (358)
Q Consensus       137 ~~~~~~~~  144 (358)
                      +......+
T Consensus       108 ~~~~~~~~  115 (174)
T d1p0fa2         108 IETMMNAL  115 (174)
T ss_dssp             HHHHHHHH
T ss_pred             chHHHHHH
Confidence            44444444

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0062  Score=45.84  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             eEEEEc-CChhHHHHHHHHHH-CCCcEE-EEcCCccchhhHHhCCCccCCCHHHH-hhcCCEEEEeeCChhhHhhhhccc
Q 018303           72 RIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ||+|+| .|+||+.+++.+.+ .++++. .+|+..               ++... ..++|+||=.. .+..+...+   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS-~p~~~~~~~---   61 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFT-HPDVVMGNL---   61 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECC-CTTTHHHHH---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcc-cHHHHHHHH---
Confidence            699999 59999999998765 467765 355532               11222 24689999888 577777776   


Q ss_pred             ccccccCCCCCEEEEccCCChh-HHHHHHHHH-HhcCCeEecCCCC
Q 018303          148 HGAASGMGPGKGYVDVSTVDGD-TSKLINGHI-KATGASFLEAPVS  191 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l-~~~~~~~~~~~~~  191 (358)
                      +..   ++.|.-+|--++|-.. +.+.+.+.+ ..+.+.++-+|.+
T Consensus        62 ~~~---~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNf  104 (135)
T d1yl7a1          62 EFL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF  104 (135)
T ss_dssp             HHH---HHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             HHH---HhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence            333   3456666666666543 344555533 3445656655554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.75  E-value=0.00094  Score=56.54  Aligned_cols=83  Identities=14%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             CeEEEE-cC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhcc
Q 018303           71 GRIGFL-GM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgII-G~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~~  146 (358)
                      |||.+| |. +.||+++|+.|++.|++|.+++|++++.+...+       .+.+.  ..+++.+.+  ....+++.++  
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~-------~i~~~--g~~~~~~~~Dv~~~~~v~~~~--   69 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS-------EINQA--GGHAVAVKVDVSDRDQVFAAV--   69 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence            467666 54 779999999999999999999999877655432       11111  123444443  2445666666  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       ++..+...+=.++||.+.
T Consensus        70 -~~~~~~~g~iDilVnnAG   87 (255)
T d1gega_          70 -EQARKTLGGFDVIVNNAG   87 (255)
T ss_dssp             -HHHHHHTTCCCEEEECCC
T ss_pred             -HHHHHHhCCccEEEeccc
Confidence             555555555567777643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.74  E-value=0.0011  Score=50.68  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCC--cEEEEcCCcc--chh----hHHh---C--CCc-cCCCHHHHhhcCCEEEEeeC
Q 018303           72 RIGFLG-MGIMGTPMAQNLLKAGC--DVTVWNRTKS--KCD----PLIS---L--GAK-YQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~~g~--~V~~~~~~~~--~~~----~~~~---~--g~~-~~~~~~~~~~~aDivi~~vp  135 (358)
                      ||+||| +|++|+.+|..+...+.  ++.++|++..  ..+    .+.+   .  ... ...+. +.+++||+|+++.-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            799999 69999999999998775  7889997432  211    1111   0  111 12344 44689999999863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0033  Score=48.49  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh----HHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP----LISLGAKY----QPSPDEV----AASCDVTFAMLADPES  139 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~  139 (358)
                      .|-|+|+|.+|..+++.|.+.|.+|.+.+.++++...    ....++.+    ..+.+-+    ++++|.|+++++.+..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            5889999999999999999999999999988764322    22234322    1232221    4569999999976544


Q ss_pred             Hhhh
Q 018303          140 AMDV  143 (358)
Q Consensus       140 ~~~~  143 (358)
                      .-.+
T Consensus        85 n~~~   88 (153)
T d1id1a_          85 NAFV   88 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.00086  Score=53.12  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=59.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHH------hhcCCEEEEeeCChhhHh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV------AASCDVTFAMLADPESAM  141 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~aDivi~~vp~~~~~~  141 (358)
                      .+.+|.|.|. |.+|....+.++..|.+|++.++++++.+.+.+.|....-+..+.      ...+|+|+-++.  ..+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~~~  104 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVE  104 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TTHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hhHH
Confidence            4568999995 999999999999999999999998888888777775433222221      134677777664  2222


Q ss_pred             hhhcccccccccCCCCCEEEEcc
Q 018303          142 DVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ..       +..++++..++.++
T Consensus       105 ~~-------~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         105 ES-------LGLLAHGGRLVYIG  120 (171)
T ss_dssp             HH-------HTTEEEEEEEEEC-
T ss_pred             HH-------HHHHhcCCcEEEEe
Confidence            22       34566666666654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.67  E-value=0.0026  Score=47.61  Aligned_cols=84  Identities=10%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHhhh
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~~~  143 (358)
                      .|-|+|+|.+|+.+++.|.  |.+|.+.+.+++..+.+...|+.+    .++.+-+    +.+|+.++++++.+.....+
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~   79 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC   79 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence            5789999999999999995  567888899888888777666433    1233222    45699999999765544444


Q ss_pred             hcccccccccCCCCCEEE
Q 018303          144 ACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi  161 (358)
                      +    .....+.|...++
T Consensus        80 ~----~~~r~~~~~~~ii   93 (129)
T d2fy8a1          80 I----LGIRKIDESVRII   93 (129)
T ss_dssp             H----HHHHHHCSSSCEE
T ss_pred             H----HHHHHHCCCceEE
Confidence            3    2233445554444

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0025  Score=53.90  Aligned_cols=92  Identities=14%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             cCCCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHh
Q 018303           65 AEDELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAM  141 (358)
Q Consensus        65 ~~~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~  141 (358)
                      |..+++|++-|.|. +.||.++|+.|++.|++|.+++|++++.+.+.++       +.+.-...+++.+.+  .+..+++
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~   77 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDIL   77 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHH
Confidence            33566778888865 8999999999999999999999998776654321       111111234444443  3456677


Q ss_pred             hhhcccccccccCCCCCEEEEccCC
Q 018303          142 DVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       142 ~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      .++   +.+.+...+=.++||.+..
T Consensus        78 ~~v---~~~~~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          78 SMF---SAIRSQHSGVDICINNAGL   99 (257)
T ss_dssp             HHH---HHHHHHHCCCSEEEECCCC
T ss_pred             HHH---HHHHHhcCCCCEEEecccc
Confidence            777   5555555555677777543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00027  Score=54.92  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      ++++++|.|||.|.+|..-++.|.+.|.+|+++++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578899999999999999999999999999999754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0031  Score=50.16  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ....++|.|||.|..|..-|..|+..||+|+++++++..
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            455689999999999999999999999999999997654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.56  E-value=0.0017  Score=51.32  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC----CC-HHHHhh-----cCCEEEEeeCChh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ----PS-PDEVAA-----SCDVTFAMLADPE  138 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~----~~-~~~~~~-----~aDivi~~vp~~~  138 (358)
                      +.+|.|+|+|.+|...++.++..|. .|++.++++++.+.+++.|...+    ++ .++..+     ..|+|+.++....
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~  112 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA  112 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcch
Confidence            4589999999999999999988775 67788999888887777654321    12 222222     3788888886444


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ..+..+       ..++++..++.++-
T Consensus       113 ~~~~a~-------~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         113 TVDYTP-------YLLGRMGRLIIVGY  132 (172)
T ss_dssp             HHHHGG-------GGEEEEEEEEECCC
T ss_pred             HHHHHH-------HHHhCCCEEEEEeC
Confidence            444443       45667776666643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.56  E-value=0.005  Score=51.08  Aligned_cols=110  Identities=14%  Similarity=0.150  Sum_probs=68.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHH-HCCCcEEEEc-CC-----ccch--hh---HHh-C-------CCccCCCHHHHhh-
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWN-RT-----KSKC--DP---LIS-L-------GAKYQPSPDEVAA-  125 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~-~~g~~V~~~~-~~-----~~~~--~~---~~~-~-------g~~~~~~~~~~~~-  125 (358)
                      ++.+++|.|-|+|++|..+|+.|. +.|..|+.++ .+     ++-.  ..   ..+ .       +... .+.++++. 
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~  106 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL  106 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEE-ECHHHHHTS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecccccee-ecccccccc
Confidence            567889999999999999999996 5798887654 21     1111  11   111 1       1122 24566665 


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +|||++-|-     +.+.+  +++..+.++ -++|+-.++++. +.++ .+.|.++|+.++.
T Consensus       107 ~~DI~~PcA-----~~~~I--~~~~a~~l~-~~~I~e~AN~p~-t~~a-~~~L~~rgI~~~P  158 (234)
T d1b26a1         107 DVDILVPAA-----LEGAI--HAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGILVVP  158 (234)
T ss_dssp             CCSEEEECS-----CTTCB--CHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred             ccceeecch-----hcccc--cHHHHHHhh-hceEeecCCCCC-CHHH-HHHHHHCCeEEec
Confidence            799988775     33344  334444554 356776666654 4433 5778888887763

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.53  E-value=0.0078  Score=47.50  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC---CC----cEEEEcCCccc--hhhHH----hC------CCccCCCHHHHhhcCCE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA---GC----DVTVWNRTKSK--CDPLI----SL------GAKYQPSPDEVAASCDV  129 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~---g~----~V~~~~~~~~~--~~~~~----~~------g~~~~~~~~~~~~~aDi  129 (358)
                      ..||.|+|+ |.+|..++..|+..   |.    .+..+|.....  .+...    +.      .....++..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 99999999999863   42    45567765432  12111    11      23446788899999999


Q ss_pred             EEEeeC
Q 018303          130 TFAMLA  135 (358)
Q Consensus       130 vi~~vp  135 (358)
                      ||+...
T Consensus       104 Vvi~ag  109 (175)
T d7mdha1         104 ALLIGA  109 (175)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            999974

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.53  E-value=0.0018  Score=50.97  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccC-----CCHHH-Hh-----hcCCEEEEeeCC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQ-----PSPDE-VA-----ASCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~-~~-----~~aDivi~~vp~  136 (358)
                      +.+|.|+|+ |.+|...++.++..| .+|++.++++++.+.+.+.|...+     .+..+ ..     ...|+++.++..
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~  107 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNS  107 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCC
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccccc
Confidence            358999995 999999999998888 589999999888877776664221     12222 22     237888888864


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEcc
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ....+..+       ..++++..++.++
T Consensus       108 ~~~~~~a~-------~~l~~~G~iv~~G  128 (170)
T d1jvba2         108 EKTLSVYP-------KALAKQGKYVMVG  128 (170)
T ss_dssp             HHHHTTGG-------GGEEEEEEEEECC
T ss_pred             chHHHhhh-------hhcccCCEEEEec
Confidence            43334333       5567777777664

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.53  E-value=0.0031  Score=50.36  Aligned_cols=92  Identities=18%  Similarity=0.224  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHh-------CC-CccCCCHHHHhhcCCEEEEeeCChh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLIS-------LG-AKYQPSPDEVAASCDVTFAMLADPE  138 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~-------~g-~~~~~~~~~~~~~aDivi~~vp~~~  138 (358)
                      +..||||||+ |..|+.+.+.|..+ .+++.....+....+.+.+       .. .......++...++|++++++|.. 
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~-   82 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG-   82 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS-
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc-
Confidence            4468999987 99999999999875 3455544222222122211       01 111223345567899999999854 


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCCh
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                      ....+.   .    .+.....+|+.+...-
T Consensus        83 ~s~~~~---~----~l~~~~~~v~~~~~~~  105 (183)
T d2cvoa1          83 TTQEII---K----GLPQELKIVDLSADFR  105 (183)
T ss_dssp             HHHHHH---H----TSCSSCEEEECSSTTT
T ss_pred             hHHHHH---H----HHHhcCcccccchhhh
Confidence            334443   2    2334445555555433

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.0012  Score=52.64  Aligned_cols=94  Identities=17%  Similarity=0.125  Sum_probs=57.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC-CCcEEE-EcCC--ccchhhHHh-----CC-----CccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRT--KSKCDPLIS-----LG-----AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~-~~~~--~~~~~~~~~-----~g-----~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +++|+|||+ |..|+.+.+.|..+ .++|.. +.++  ....+.+..     .+     .....+.++...++|++++|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence            368999995 99999999999986 566653 3221  111111211     01     112234445567899999999


Q ss_pred             CChhhHhhhhcccccccccCCCCCEEEEccCCChhH
Q 018303          135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                      |. .......   ..   ....+..+||.|...-.+
T Consensus        81 p~-~~s~~~~---~~---~~~~~~~vIDlSadfRl~  109 (179)
T d2g17a1          81 AH-EVSHDLA---PQ---FLQAGCVVFDLSGAFRVN  109 (179)
T ss_dssp             CH-HHHHHHH---HH---HHHTTCEEEECSSTTSSS
T ss_pred             cc-hhHHHHh---hh---hhhcCceeeccccccccc
Confidence            74 3433343   22   245788999998775443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.51  E-value=0.0016  Score=55.28  Aligned_cols=87  Identities=10%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+++|++-|-|. +.||+++|+.|++.|++|.+++|+.+..+...+.       +.+  ...++..+.+  ....+++.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~   72 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGT   72 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHH
Confidence            466778888876 6799999999999999999999988766554321       111  1234444444  245666777


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||...
T Consensus        73 ~---~~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          73 V---DSVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHhCCCCeehhhhc
Confidence            7   555555555567777643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.51  E-value=0.0013  Score=55.39  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW   99 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~   99 (358)
                      .+.++||.|-|+|++|...|+.|.+.|.+|+.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            567889999999999999999999999988743

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0026  Score=53.28  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+++|++++.+.+.+          ++-.++..+.+=+....+++.++  
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~----------~~~~~~~~~~~Dv~~~~~v~~~~--   69 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD----------YLGANGKGLMLNVTDPASIESVL--   69 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----------HHGGGEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----------HhCCCCcEEEEEecCHHHhhhhh--
Confidence            44556666665 789999999999999999999998876665443          11112222222233556777777  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       +++.+...+=.++||.+.
T Consensus        70 -~~~~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          70 -EKIRAEFGEVDILVNNAG   87 (243)
T ss_dssp             -HHHHHHTCSCSEEEECCC
T ss_pred             -hhhhcccCCcceehhhhh
Confidence             666666555567777743

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0021  Score=47.70  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=32.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .+++.|||.|.+|..+|..|++.|.+|+++.+.+.-
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            369999999999999999999999999999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0021  Score=50.80  Aligned_cols=89  Identities=17%  Similarity=0.072  Sum_probs=58.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----CCHHHHh------hcCCEEEEeeCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVA------ASCDVTFAMLAD  136 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~------~~aDivi~~vp~  136 (358)
                      .+.+|.|+|+ |.+|....+.++..|.+|++.++++++.+.+.+.|...+     .+..+.+      +..|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            3458999995 999999999999999999998888877777776665321     1222222      12577766663 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .+..+       ..+..++++..++.++.
T Consensus       107 ~~~~~-------~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         107 NVNLS-------KDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHH-------HHHHHEEEEEEEEECCC
T ss_pred             HHHHH-------HHHhccCCCCEEEEEec
Confidence            32222       22345666666666643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.37  E-value=0.0073  Score=47.56  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCC-------CHHHHh-----hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQP-------SPDEVA-----ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~-----~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...+..++..|. +|++.++++++.+...+.|...+.       ...+..     ...|+++.++.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            34689999999999999999999884 888999999988877776643211       122222     13688888875


Q ss_pred             ChhhHhhh
Q 018303          136 DPESAMDV  143 (358)
Q Consensus       136 ~~~~~~~~  143 (358)
                      .....+..
T Consensus       108 ~~~~~~~a  115 (176)
T d2jhfa2         108 RLDTMVTA  115 (176)
T ss_dssp             CHHHHHHH
T ss_pred             chhHHHHH
Confidence            44333333

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.37  E-value=0.0023  Score=54.06  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhccc
Q 018303           72 RIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACGK  147 (358)
Q Consensus        72 ~IgII--G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~~~  147 (358)
                      ||++|  |.+.||.++|+.|++.|++|.+++|++++.+...+.       +.+.  ..++..+.+  ....+++.++   
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~v~~~~---   70 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREA--GVEADGRTCDVRSVPEIEALV---   70 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeecCCHHHHHHHH---
Confidence            56666  557899999999999999999999998766654331       1111  223444443  3456777777   


Q ss_pred             ccccccCCCCCEEEEccC
Q 018303          148 HGAASGMGPGKGYVDVST  165 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~  165 (358)
                      ++..+...+=.++||.+.
T Consensus        71 ~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          71 AAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHhCCCCEEEeccc
Confidence            666666655567887743

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.36  E-value=0.0028  Score=53.48  Aligned_cols=86  Identities=15%  Similarity=0.087  Sum_probs=56.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      ++++|++-|-|. +.||.++|+.|++.|++|.+++|+.++.+...++          +-.++..+.+=+....+++.++ 
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~-   70 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE----------LGDAARYQHLDVTIEEDWQRVV-   70 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----------TGGGEEEEECCTTCHHHHHHHH-
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCceEEEEcccCCHHHHHHHH-
Confidence            467778888876 6799999999999999999999998766554432          1112222222233455666666 


Q ss_pred             ccccccccCCCCCEEEEccC
Q 018303          146 GKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~  165 (358)
                        +++.+...+=.++||.+.
T Consensus        71 --~~~~~~~g~iDilVnnAg   88 (254)
T d1hdca_          71 --AYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             --HHHHHHHSCCCEEEECCC
T ss_pred             --HHHHHHcCCccEEEecCc
Confidence              555555444457777643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.35  E-value=0.01  Score=46.61  Aligned_cols=71  Identities=18%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-------CCHHHHh-----hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-------PSPDEVA-----ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~-----~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...++.++..|. .|++.++++++.+...+.|...+       ++..+..     ...|+|+.++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            34589999999999999999999986 57778888888777776664322       1222222     23788888885


Q ss_pred             Chhh
Q 018303          136 DPES  139 (358)
Q Consensus       136 ~~~~  139 (358)
                      .+..
T Consensus       108 ~~~~  111 (176)
T d2fzwa2         108 NVKV  111 (176)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            4433

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.0034  Score=52.58  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      .+++|++-|-|. +.||+++|+.|++.|++|.+.+|++++.+.+.++          +-..+..+..=+.+..+++.++ 
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~-   71 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE----------LADAARYVHLDVTQPAQWKAAV-   71 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TGGGEEEEECCTTCHHHHHHHH-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hhCcceEEEeecCCHHHHHHHH-
Confidence            366777777766 7799999999999999999999998776655432          1111112212233556677777 


Q ss_pred             ccccccccCCCCCEEEEccCC
Q 018303          146 GKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~  166 (358)
                        +++.+...+=.++||.+..
T Consensus        72 --~~~~~~~g~idilinnAG~   90 (244)
T d1nffa_          72 --DTAVTAFGGLHVLVNNAGI   90 (244)
T ss_dssp             --HHHHHHHSCCCEEEECCCC
T ss_pred             --HHHHHHhCCCeEEEECCcc
Confidence              6665655556778877543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.34  E-value=0.0023  Score=47.05  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .++|.|||.|.+|..+|..|.+.|.+|+++.+.+.-
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            369999999999999999999999999999887653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.33  E-value=0.0031  Score=53.36  Aligned_cols=87  Identities=10%  Similarity=0.048  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|-|. +.||+++|+.|++.|++|.+++|+.++.+...++       +.+  ....+..+.+  .+..+++.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~   75 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRS--KGFKVEASVCDLSSRSERQEL   75 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCCceEEEeeCCCHHHHHHH
Confidence            466777777776 6799999999999999999999988776554321       111  1122333333  245566666


Q ss_pred             hcccccccccCC-CCCEEEEccC
Q 018303          144 ACGKHGAASGMG-PGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~-~~~~vi~~s~  165 (358)
                      +   +++...+. +=.++||.+.
T Consensus        76 ~---~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          76 M---NTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             H---HHHHHHTTTCCCEEEECCC
T ss_pred             H---HHHHHHhCCCceEEEECCc
Confidence            6   55555544 4467777744

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.28  E-value=0.011  Score=49.07  Aligned_cols=110  Identities=17%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHH-CCCcEEEE-cCCcc-------chhhHH---h-C-------CCccCCCHHHHh-h
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLK-AGCDVTVW-NRTKS-------KCDPLI---S-L-------GAKYQPSPDEVA-A  125 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~~~-~~~~~-------~~~~~~---~-~-------g~~~~~~~~~~~-~  125 (358)
                      .+.++||.|-|+|++|..+|+.|.. .|..|+.. |.+..       ..+.+.   . .       +.... +.++++ .
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence            4678899999999999999999864 68887654 43311       111111   1 1       22222 455554 4


Q ss_pred             cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      +|||++-|.-     .+.+  +++..+.+ .-++|+..++++. +.++ .+.|.++++.++.
T Consensus       108 ~~DIl~PcA~-----~~~I--~~~~a~~i-~ak~I~e~AN~p~-t~ea-~~~L~~rgI~~iP  159 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVI--TKKNADNI-KAKIVAEVANGPV-TPEA-DEILFEKGILQIP  159 (239)
T ss_dssp             CCSEEEECSC-----SCCB--CTTGGGGC-CCSEEECCSSSCB-CHHH-HHHHHHTTCEEEC
T ss_pred             cccEEeeccc-----cccc--cHHHHHhc-cccEEEecCCCCC-CHHH-HHHHHHCCCEEec
Confidence            6999888873     2444  34444444 3356776666665 3434 6778888887763

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.28  E-value=0.0025  Score=46.88  Aligned_cols=35  Identities=20%  Similarity=0.473  Sum_probs=32.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      .++|.|||.|.+|..+|..|+..|.+|+++.|.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            46999999999999999999999999999998654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.0024  Score=47.39  Aligned_cols=33  Identities=33%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      .+++.|||.|.+|..+|..|+++|.+|+++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            358999999999999999999999999999875

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.26  E-value=0.0025  Score=53.07  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      .+.++|.|||.|-.|...|..|++.|++|++++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            344689999999999999999999999999999853

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.005  Score=52.20  Aligned_cols=86  Identities=12%  Similarity=-0.010  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcC-C--hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           68 ELPGRIGFLGM-G--IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G--~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      +++|++-|.|. |  .||.++|+.|++.|++|++.+|+.+..+.+.+        +.+....+.++..-+......+.++
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~~~   74 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSLY   74 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHHHH
Confidence            56789999986 5  49999999999999999999998543333221        2222334445444444455555555


Q ss_pred             cccccccccCCCCCEEEEcc
Q 018303          145 CGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s  164 (358)
                         .+......+-.++|+..
T Consensus        75 ---~~~~~~~g~id~lV~na   91 (274)
T d2pd4a1          75 ---NSVKKDLGSLDFIVHSV   91 (274)
T ss_dssp             ---HHHHHHTSCEEEEEECC
T ss_pred             ---HHHHHHcCCCCeEEeec
Confidence               44444444444555543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.23  E-value=0.0018  Score=51.78  Aligned_cols=38  Identities=24%  Similarity=0.429  Sum_probs=33.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchh
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCD  107 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~  107 (358)
                      ++||.|||.|..|...|..|++.|+ +|+++++++....
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG   42 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccc
Confidence            4699999999999999999999998 5999998765433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0031  Score=46.29  Aligned_cols=36  Identities=17%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .++|.|||.|.+|..+|..|++.|.+|+++++.+..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            368999999999999999999999999999987643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0045  Score=51.74  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++|++-|-|. +.||.++|+.|++.|++|.+++|+.++.+...+. .           ++..+.+=+.+..+++.++  
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-~-----------~~~~~~~Dv~~~~~v~~~~--   68 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-V-----------GAHPVVMDVADPASVERGF--   68 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T-----------TCEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCeEEEEecCCHHHHHHHH--
Confidence            55677777776 6799999999999999999999988766655432 1           1112222233556677776  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       ++..+...+=.++||.+.
T Consensus        69 -~~~~~~~g~iDilVnnAG   86 (242)
T d1ulsa_          69 -AEALAHLGRLDGVVHYAG   86 (242)
T ss_dssp             -HHHHHHHSSCCEEEECCC
T ss_pred             -HHHHHhcCCceEEEECCc
Confidence             555555555567777644

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.16  E-value=0.0079  Score=50.67  Aligned_cols=88  Identities=13%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+++|+.++.+...+       .+.+...+..++.+.+  .+..+++.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~-------~~~~~~~~~~~~~~~~Dvt~~~~v~~~~   74 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA-------AVLETAPDAEVLTTVADVSDEAQVEAYV   74 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHCTTCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHhhCCCCeEEEEeccCCCHHHHHHHH
Confidence            34566767665 679999999999999999999999876654432       1122222345555544  2455677776


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         ++..+.+.+=.++||.+.
T Consensus        75 ---~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          75 ---TATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             ---HHHHHHHSCCSEEEECCC
T ss_pred             ---HHHHHHhCCCCEEEECCc
Confidence               555555555567777643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.15  E-value=0.0032  Score=46.40  Aligned_cols=35  Identities=29%  Similarity=0.683  Sum_probs=31.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      .++|.|||.|.+|..+|..|+..|.+|++..+...
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            36899999999999999999999999999987654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.023  Score=41.07  Aligned_cols=108  Identities=12%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .||.|-|. |+.|+..++++.+.|-+|.. +.+  .+... ...|+..+++..|+.+  ++|.-++.+|.+.....++  
T Consensus         7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP--gkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~--   81 (119)
T d2nu7a1           7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP--GKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL--   81 (119)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH--
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc--CCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH--
Confidence            48999998 99999999999999988764 444  33211 1246888899999876  4899999998655555554  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL  186 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~  186 (358)
                       +.+-+.+  ..+++-+-..++.|...+...++..+..++
T Consensus        82 -EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          82 -EAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             -HHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence             4333222  123333445677788888888877776654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.10  E-value=0.0028  Score=53.04  Aligned_cols=83  Identities=13%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +++|++-|.|. +.||.++|+.|++.|++|.+.+|+.++.+...++ .           +.+++.+.+  ....+++.++
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----------~~~~~~~~~Dls~~~~i~~~~   70 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-L-----------EAEAIAVVADVSDPKAVEAVF   70 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-C-----------CSSEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-c-----------CCceEEEEecCCCHHHHHHHH
Confidence            56778888876 5699999999999999999999998766544432 0           123444433  3456777777


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         +++.+.+.+=.++||.+.
T Consensus        71 ---~~i~~~~g~iDiLinnAg   88 (241)
T d2a4ka1          71 ---AEALEEFGRLHGVAHFAG   88 (241)
T ss_dssp             ---HHHHHHHSCCCEEEEGGG
T ss_pred             ---HHHHHHhCCccEeccccc
Confidence               666666666677887643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.09  E-value=0.005  Score=52.52  Aligned_cols=85  Identities=11%  Similarity=0.117  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+++|++++.+.+.+          +.-.++..+..-+....+++.++  
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~----------~~~~~~~~~~~Dv~~~~~~~~~~--   70 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET----------DHGDNVLGIVGDVRSLEDQKQAA--   70 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HHGGGEEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------HcCCCeeEEecccccHHHHHHHH--
Confidence            56678877765 899999999999999999999998776554432          11122222222233445566666  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       ++..+...+=.++||.+.
T Consensus        71 -~~~~~~~g~idilvnnAG   88 (276)
T d1bdba_          71 -SRCVARFGKIDTLIPNAG   88 (276)
T ss_dssp             -HHHHHHHSCCCEEECCCC
T ss_pred             -HHHHHHhCCccccccccc
Confidence             555555555566776643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0031  Score=53.21  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeC--ChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLA--DPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp--~~~~~~~~  143 (358)
                      .+++|++-|-|. +.||.++|+.|++.|++|.+.+|+.++.+...++       +.+.  ..+++.+.+-  ...+.+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~~~~~   78 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQL--GGQAFACRCDITSEQELSAL   78 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHc--CCcEEEEEccCCCHHHHHHH
Confidence            356667766665 7899999999999999999999988766554321       1111  2344444442  34556666


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+.+.+=.++||.+.
T Consensus        79 ~---~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          79 A---DFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             H---HHHHHHHSSCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEeeeCCc
Confidence            6   555555545567777643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.0037  Score=52.86  Aligned_cols=87  Identities=10%  Similarity=0.031  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+++|++-|-|. +.||.++|+.|++.|++|.+++|+.++.+...+.       +.+  ...++..+.+  ....+.+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~   75 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK-------WQK--KGFQVTGSVCDASLRPEREKL   75 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHH--TTCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCceEEEeccCCCHHHHHHH
Confidence            456677777766 6799999999999999999999998776654321       111  1123333333  234455666


Q ss_pred             hcccccccccC-CCCCEEEEccC
Q 018303          144 ACGKHGAASGM-GPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l-~~~~~vi~~s~  165 (358)
                      +   ++..+.. .+=.++||.+.
T Consensus        76 ~---~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          76 M---QTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             H---HHHHHHHTTCCSEEEEECC
T ss_pred             H---HHHHHHhCCCccccccccc
Confidence            6   4444443 23356676644

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.06  E-value=0.0058  Score=52.44  Aligned_cols=88  Identities=11%  Similarity=0.023  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+++|++-|-| .|.||.++|+.|++.|.+|++.+|+.++.+...+       ++.+. ...++..+.+  .....++.+
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~-------~l~~~-~g~~~~~~~~D~~~~~~v~~~   93 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE-------QISSQ-TGNKVHAIQCDVRDPDMVQNT   93 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHH-HSSCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-------HHHHh-cCCceEEEEecccChHHHHHH
Confidence            67778888886 5999999999999999999999999876554332       11111 1233444433  233444555


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   .........=.++||...
T Consensus        94 ~---~~~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          94 V---SELIKVAGHPNIVINNAA  112 (294)
T ss_dssp             H---HHHHHHTCSCSEEEECCC
T ss_pred             h---hhhhhhccccchhhhhhh
Confidence            4   334444444457777644

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0041  Score=46.22  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +++.|||.|.+|..+|..|+..|.+|+++.|++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.04  E-value=0.0058  Score=51.37  Aligned_cols=89  Identities=16%  Similarity=0.108  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303           67 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~  143 (358)
                      ++++|++-|-|++   .||+++|+.|++.|++|.+.+|+.+..+...+        ..+....+..+-.-+.+..+.+.+
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~D~~~~~~v~~~   76 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEK--------LAEALGGALLFRADVTQDEELDAL   76 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------HHHHTTCCEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH--------hhhccCcccccccccCCHHHHHHH
Confidence            5778899999985   49999999999999999999987544332211        111111222222223345566666


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +   +...+...+=.++||....
T Consensus        77 ~---~~~~~~~g~iDilVnnag~   96 (256)
T d1ulua_          77 F---AGVKEAFGGLDYLVHAIAF   96 (256)
T ss_dssp             H---HHHHHHHSSEEEEEECCCC
T ss_pred             H---HHHHHhcCCceEEEecccc
Confidence            6   4444444444577776544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.04  E-value=0.0039  Score=52.42  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +++|.+-|.|. +.||+++|+.|++.|++|.+++|+.++.+...+.       +.+.  ..++..+.+  .+..+++.++
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvt~~~~v~~~~   78 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKSF--GYESSGYAGDVSKKEEISEVI   78 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHTT--TCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHH
Confidence            44556666665 7899999999999999999999988766554331       1111  123333333  3456677777


Q ss_pred             cccccccccCCCCCEEEEcc
Q 018303          145 CGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s  164 (358)
                         ++..+...+=.++||..
T Consensus        79 ---~~~~~~~g~iDilvnna   95 (251)
T d2c07a1          79 ---NKILTEHKNVDILVNNA   95 (251)
T ss_dssp             ---HHHHHHCSCCCEEEECC
T ss_pred             ---HHHHHhcCCceeeeecc
Confidence               55555555556777764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0051  Score=51.64  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe--eCChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--vp~~~~~~~~  143 (358)
                      .+.+|++-|-|. +.||+++|+.|++.|++|.+++|+.+..+.+.++.           .  ++..+.  +.+..+++.+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----------~--~~~~~~~Dvs~~~~v~~~   69 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----------P--GAVFILCDVTQEDDVKTL   69 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------T--TEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----------C--CCeEEEccCCCHHHHHHH
Confidence            466778888865 89999999999999999999999987766554421           1  122222  2345667777


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||.+.
T Consensus        70 ~---~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          70 V---SETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHhcCCCCEEEeccc
Confidence            7   555555555567777654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.03  E-value=0.0031  Score=53.34  Aligned_cols=88  Identities=13%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|-|. +.||.++|+.|++.|++|.+.+|+.++.+...+       .+.+.. ..++..+.+  ....+++.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~~~~~~-g~~~~~~~~Dv~~~~~v~~~   77 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE-------KVGKEF-GVKTKAYQCDVSNTDIVTKT   77 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH-------HHHHHH-TCCEEEEECCTTCHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCceEEEEccCCCHHHHHHH
Confidence            466777777766 569999999999999999999998877654432       111111 234444444  345566677


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||.+.
T Consensus        78 ~---~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          78 I---QQIDADLGPISGLIANAG   96 (260)
T ss_dssp             H---HHHHHHSCSEEEEEECCC
T ss_pred             H---HHHHHHhCCCcEeccccc
Confidence            7   555555555567777654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0026  Score=54.31  Aligned_cols=86  Identities=13%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             CCeEEEE--cCChhHHHHHHHHHH-CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           70 PGRIGFL--GMGIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgII--G~G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +|+|+||  |.+.||.++|+.|++ .|.+|++++|+.++.+...+.       +.+.-.++.++.+=+.+..+++.++  
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~--   72 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALR--   72 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH--
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHH--
Confidence            6799999  779999999999987 489999999998876654431       1111112333333344455666666  


Q ss_pred             cccccccCCCCCEEEEccC
Q 018303          147 KHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~  165 (358)
                       +++.+...+=.++||.+.
T Consensus        73 -~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          73 -DFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             -HHHHHHHSSEEEEEECCC
T ss_pred             -HHHHHhcCCcEEEEEcCC
Confidence             455444444457777644

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.01  E-value=0.0044  Score=45.79  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .++|.|||.|.+|..+|..|+..|.+|+++++++.-
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            469999999999999999999999999999987653

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.023  Score=41.16  Aligned_cols=109  Identities=18%  Similarity=0.192  Sum_probs=73.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~~  146 (358)
                      .||-|-|. |+.|+..+++..+.|-+|.. +.+  .+.-. .-.++..+++..|+.+  ++|.-++.+|.+.....++  
T Consensus         8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtP--gkgG~-~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~--   82 (121)
T d1oi7a1           8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTP--GKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL--   82 (121)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH--
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeec--CCCCc-EEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH--
Confidence            37999998 99999999999999988764 443  33211 1136788899999876  4899999998544444444  


Q ss_pred             cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                       +.+-+.++  .+++-+-..++.|...+.+.++..+...++
T Consensus        83 -EAi~agI~--liv~ITEgVPv~Dm~~i~~~~~~~~~~liG  120 (121)
T d1oi7a1          83 -EAAHAGIP--LIVLITEGIPTLDMVRAVEEIKALGSRLIG  120 (121)
T ss_dssp             -HHHHTTCS--EEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             -HHHhCCCc--EEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence             43333221  233333455667777888888877766553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.99  E-value=0.0033  Score=51.56  Aligned_cols=66  Identities=11%  Similarity=0.015  Sum_probs=44.9

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEE--EEcCCccchhhHHhC------CCccCCCHHHHhhcCCEEEEeeC
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVT--VWNRTKSKCDPLISL------GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~--~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      ++||.|.| .|.+|+.+++.|.+.|++|.  ...|++++...+...      ......+..++++++|.|+.+..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            46899998 59999999999999997754  456776554433211      11112234566788999987764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.98  E-value=0.0044  Score=52.12  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      ++++|++-|-|. +.||+++|+.|++.|++|.+++|+.++.+...+       .+.+.. ..+++.+.+  ....+++.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~-------~l~~~~-g~~~~~~~~Dv~~~~~v~~~   73 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ-------KLTEKY-GVETMAFRCDVSNYEEVKKL   73 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HHHHHH-CCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------HHHHHh-CCcEEEEEccCCCHHHHHHH
Confidence            456777877766 679999999999999999999998776554332       111111 234544444  245566677


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+.+.+=.++||.+.
T Consensus        74 ~---~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          74 L---EAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCCCEEEECCC
Confidence            6   555555555567777643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.98  E-value=0.0011  Score=51.49  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCc---EEEEcCCccchhhHHh--CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLIS--LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~  145 (358)
                      +|||||+ |..|+.+.+.|..+.+.   +.....+....+.+..  .........++...+.|++++++| ........ 
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~-~~~s~~~~-   80 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAG-SSTSAKYA-   80 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSC-HHHHHHHH-
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccC-ccchhhHH-
Confidence            7999998 99999999999887643   3333322111111111  011112233445678999999997 44444444 


Q ss_pred             ccccccccCCCCCEEEEccCCCh
Q 018303          146 GKHGAASGMGPGKGYVDVSTVDG  168 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~~~~  168 (358)
                        .   ....+|..|||.|...-
T Consensus        81 --~---~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          81 --P---YAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             --H---HHHHTTCEEEECSSTTT
T ss_pred             --h---hhccccceehhcChhhh
Confidence              2   23457899999987644

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.95  E-value=0.0042  Score=51.93  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +.+||.|||+|.-|...|..|++.|++|.+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            346899999999999999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.91  E-value=0.0057  Score=45.29  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ...++|.|||.|.+|..+|..|+..|.+|++.++.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3457999999999999999999999999999988654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.013  Score=50.37  Aligned_cols=90  Identities=12%  Similarity=0.045  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHH---hhcCCEEEEee--CChhhH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV---AASCDVTFAML--ADPESA  140 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~aDivi~~v--p~~~~~  140 (358)
                      .+++|++-|-|. +.||.++|+.|++.|++|.+.+|+.++.+...++       +..-   ....+++.+.+  .+..++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e-------l~~~~~~~~~~~~~~~~~Dvs~~~~v   81 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE-------LQANLPPTKQARVIPIQCNIRNEEEV   81 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhhccccCceEEEEeccCCCHHHH
Confidence            467778888866 7799999999999999999999998776554321       1110   12345665555  245567


Q ss_pred             hhhhcccccccccCCCCCEEEEccCC
Q 018303          141 MDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +.++   ++..+...+=.++||.+..
T Consensus        82 ~~~~---~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          82 NNLV---KSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHH---HHHHHHHSCCCEEEECCCC
T ss_pred             HHHH---HHHHHHhCCeEEEEeeccc
Confidence            7777   5555555566778877543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.0051  Score=48.72  Aligned_cols=45  Identities=18%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      +.+|.|.|. |.+|...++.++..|.+|++..+++++.+.+.+.|.
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga   71 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV   71 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence            458999885 999999999999999999998888777776665553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.89  E-value=0.0034  Score=46.57  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=33.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .+++.|||.|.+|..+|..++++|.+|++..|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            468999999999999999999999999999987654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.013  Score=48.73  Aligned_cols=45  Identities=24%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  111 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~  111 (358)
                      .+.+|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+.+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            467788888866 789999999999999999999999877665543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.85  E-value=0.0052  Score=51.66  Aligned_cols=84  Identities=13%  Similarity=0.037  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+++|++-|-|. +.||.++|+.|++.|++|.+.+|+.++.+.+.++          +  ....+.+.+  ....+.+.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~~~~~   70 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE----------L--GERSMFVRHDVSSEADWTLV   70 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCCeEEEEeecCCHHHHHHH
Confidence            356667777665 6799999999999999999999988766554431          1  122333332  245566666


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +...+...+=.++||.+.
T Consensus        71 ~---~~~~~~~g~iDilVnnAG   89 (253)
T d1hxha_          71 M---AAVQRRLGTLNVLVNNAG   89 (253)
T ss_dssp             H---HHHHHHHCSCCEEEECCC
T ss_pred             H---HHHHHHhCCCCeEEeccc
Confidence            6   555555555577777754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.84  E-value=0.0052  Score=51.74  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+++|+.++.+.+.++          +  ..+++.+.+  ....+++.++
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~----------~--~~~~~~~~~Dvt~~~~v~~~~   70 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE----------I--GPAACAIALDVTDQASIDRCV   70 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH----------H--CTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCceEEEEeeCCCHHHHHHHH
Confidence            45667777765 8899999999999999999999988766554431          1  122333332  3455666666


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         ++..+...+=.++||...
T Consensus        71 ---~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          71 ---AELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             ---HHHHHHHSCCCEEEECCC
T ss_pred             ---HHHHHHhCCccEEEeecc
Confidence               555555444456776643

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.78  E-value=8.8e-06  Score=61.18  Aligned_cols=22  Identities=14%  Similarity=-0.034  Sum_probs=19.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      +++|+|+|+||+.+|+++.++|
T Consensus       100 ~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         100 NLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CEEEEcCCHHHHHHHHHHHhcC
Confidence            5789999999999999998876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.76  E-value=0.0083  Score=44.02  Aligned_cols=37  Identities=14%  Similarity=0.074  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ..+++|.|||.|.+|..+|..|+..|.+|.++.+.+.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3457999999999999999999999999999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.74  E-value=0.0058  Score=49.20  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccC-----CCHHH----Hh--hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDE----VA--ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~----~~--~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...+..++..|. +|++.|+++++.+...+.|...+     .++.+    +.  ...|+++-++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            34689999999999998888888886 68889999988887777664332     12222    11  13688887774

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.72  E-value=0.013  Score=48.97  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=56.7

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      +++|++-|-| .+.||+++|+.|++.|++|.+.+|+.+..+...+.          +-...++..+.+  .+..+++.++
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~~~~~v~~~~   73 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS----------VGTPDQIQFFQHDSSDEDGWTKLF   73 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hCCCCcEEEEEccCCCHHHHHHHH
Confidence            5566676666 57899999999999999999999988766554431          111223444443  3455667777


Q ss_pred             cccccccccCCCCCEEEEccCC
Q 018303          145 CGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                         ++..+.+.+=.++||.+..
T Consensus        74 ---~~~~~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          74 ---DATEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             ---HHHHHHHSSCCEEEECCCC
T ss_pred             ---HHHHHHhCCceEEEecccc
Confidence               5555555555678877543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.016  Score=48.10  Aligned_cols=45  Identities=22%  Similarity=0.147  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  111 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~  111 (358)
                      ++++|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+.+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            466778888876 679999999999999999999999876665543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.0067  Score=44.79  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +++.|||.|.+|..+|..|+..|.+|+++.+++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            6899999999999999999999999999998764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.0062  Score=44.45  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      .+++.|||.|.+|..+|..|++.|.+|+++.+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            36899999999999999999999999999988754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.64  E-value=0.0049  Score=52.16  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      |+|.|||.|.-|...|..|++.|++|+++++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            6899999999999999999999999999998654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.60  E-value=0.02  Score=48.29  Aligned_cols=86  Identities=10%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe--eCChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--vp~~~~~~~~  143 (358)
                      .+++|++-|.|. +.||.++|+.|++.|++|.+.+|+.++.+...+.          +-....+.++.  +.+..+++.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~----------l~~~~~~~~~~~Dv~~~~~v~~~   72 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN----------IGSPDVISFVHCDVTKDEDVRNL   72 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCCTTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcCCCceEEEEccCCCHHHHHHH
Confidence            366677777765 7799999999999999999999988776654432          10111122222  2345667777


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   +++.+...+=.++||...
T Consensus        73 ~---~~~~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          73 V---DTTIAKHGKLDIMFGNVG   91 (268)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHcCCcceeccccc
Confidence            6   555555555567777643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.59  E-value=0.031  Score=43.62  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCC-------HHHHh-----hcCCEEEEeeC
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPS-------PDEVA-----ASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~aDivi~~vp  135 (358)
                      .+.+|.|+|+|.+|...+..++..|. +|++.++++++.+...+.|...+-+       ..+..     ...|+++.++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            34589999999999999999988775 6888999999988888777533211       12222     13788888885


Q ss_pred             ChhhHhh
Q 018303          136 DPESAMD  142 (358)
Q Consensus       136 ~~~~~~~  142 (358)
                      .......
T Consensus       108 ~~~~~~~  114 (175)
T d1cdoa2         108 NVGVMRN  114 (175)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4333333

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.58  E-value=0.0067  Score=45.05  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .+++.|||.|.+|..+|..++..|.+|+++.+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            368999999999999999999999999999887643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.013  Score=52.92  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhH-------------------H----hC--CC-------c
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPL-------------------I----SL--GA-------K  115 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~-------------------~----~~--g~-------~  115 (358)
                      +..||.|||+|.+|..+++.|+..|. ++.++|.+.=....+                   .    +.  .+       .
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            45689999999999999999999997 788888753211111                   0    00  11       1


Q ss_pred             cCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303          116 YQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus       116 ~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      ..+..++.+++.|+|+.++ ++...+..+
T Consensus       116 i~~~~~~~~~~~DlVi~~~-Dn~~aR~~i  143 (426)
T d1yovb1         116 IQDFNDTFYRQFHIIVCGL-DSIIARRWI  143 (426)
T ss_dssp             GGGBCHHHHTTCSEEEECC-SCHHHHHHH
T ss_pred             ccchHHHHHHhcchheecc-CcHHHHHHH
Confidence            1223357788999999999 566666666

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.55  E-value=0.0091  Score=44.78  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .++|.|||.|.+|..+|..|+..|.+|+++++.+.-
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            469999999999999999999999999999987653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.52  E-value=0.0064  Score=51.47  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=32.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +|||.|||.|.-|...|..|++.|++|+++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            36999999999999999999999999999998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.50  E-value=0.0099  Score=50.67  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhh--------HHhCCCcc-------CCCHHHHhhcCCEEEEe
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP--------LISLGAKY-------QPSPDEVAASCDVTFAM  133 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--------~~~~g~~~-------~~~~~~~~~~aDivi~~  133 (358)
                      .+||.|.| .|.+|+.+++.|.+.|++|++.+|++.....        +...++..       ..+..+.+..++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35899998 5999999999999999999999987543221        12223321       12334567788999888


Q ss_pred             eCC
Q 018303          134 LAD  136 (358)
Q Consensus       134 vp~  136 (358)
                      .+.
T Consensus        83 ~~~   85 (312)
T d1qyda_          83 LAG   85 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.47  E-value=0.011  Score=51.68  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh--HHh-CCCc-----cCCC---HHHHhhcCCEEEEeeCC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP--LIS-LGAK-----YQPS---PDEVAASCDVTFAMLAD  136 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~--~~~-~g~~-----~~~~---~~~~~~~aDivi~~vp~  136 (358)
                      .|+|.|+|. |.+|+.+++.|.+.|++|.+..|++.+...  +.. .++.     ..+.   ++.++..+|.+++..+.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            478999975 999999999999999999999998765432  222 1321     1221   34567788998887753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.019  Score=47.86  Aligned_cols=86  Identities=14%  Similarity=0.024  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcCCh---hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           68 ELPGRIGFLGMGI---MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        68 ~~~~~IgIIG~G~---iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      +.+|++-|-|.+.   ||.++|+.|.+.|++|++.+|+.+..+...+        ..........+...+.........+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~   74 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE--------FAAQLGSDIVLQCDVAEDASIDTMF   74 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--------HHhhcCCcceeecccchHHHHHHHH
Confidence            5677888888754   8999999999999999999998654433322        1111122333333444444555555


Q ss_pred             cccccccccCCCCCEEEEcc
Q 018303          145 CGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s  164 (358)
                         .+......+-.++|+..
T Consensus        75 ---~~~~~~~~~~d~~v~~a   91 (258)
T d1qsga_          75 ---AELGKVWPKFDGFVHSI   91 (258)
T ss_dssp             ---HHHHTTCSSEEEEEECC
T ss_pred             ---HHhhhcccccceEEEee
Confidence               44444444444556553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.43  E-value=0.015  Score=51.13  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------CCccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------GAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      .+.|||.|.| .|-||+.+++.|.+.|++|+++|+...........       .+.-.....++++.+|.|+-+.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            3568999996 69999999999999999999998754321111100       0111123334566789877655

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.41  E-value=0.0089  Score=50.74  Aligned_cols=88  Identities=11%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHH-hhcCCEEEEee--CChhhHhhh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~v--p~~~~~~~~  143 (358)
                      +++|++-|.|. +.||+++|+.|++.|++|.+.+|+.++.+...+.       +.+. ....++..+.+  .+..+++.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvs~~~~v~~~   75 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI-------ILKSGVSEKQVNSVVADVTTEDGQDQI   75 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCCCceEEEEccCCCHHHHHHH
Confidence            55667777765 7899999999999999999999998776654331       0000 01112333333  244566666


Q ss_pred             hcccccccccCCCCCEEEEccC
Q 018303          144 ACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +   ++..+...+=.++||.+.
T Consensus        76 ~---~~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          76 I---NSTLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             H---HHHHHHHSCCCEEEECCC
T ss_pred             H---HHHHHHhCCceEEEeCCc
Confidence            6   555555555567777643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.41  E-value=0.0076  Score=51.83  Aligned_cols=37  Identities=30%  Similarity=0.419  Sum_probs=33.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ...++|.|||.|..|...|..|++.|++|.++++++.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4457999999999999999999999999999998654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.40  E-value=0.008  Score=50.03  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=53.9

Q ss_pred             CeEEEE-cC-ChhHHHHHHHHHHCCCc-------EEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe--eCChhh
Q 018303           71 GRIGFL-GM-GIMGTPMAQNLLKAGCD-------VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPES  139 (358)
Q Consensus        71 ~~IgII-G~-G~iG~~~a~~l~~~g~~-------V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--vp~~~~  139 (358)
                      |+|.+| |. +.||+++|+.|++.|++       |..++|+.++.+.+.++       +.+  ...++..+.  +.+..+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~   71 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRA--EGALTDTITADISDMAD   71 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHT--TTCEEEEEECCTTSHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHHH
Confidence            355555 55 77999999999999987       88999988776654321       111  112233333  345567


Q ss_pred             HhhhhcccccccccCCCCCEEEEccCC
Q 018303          140 AMDVACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      ++.++   ++..+...+=.++||.+..
T Consensus        72 v~~~~---~~~~~~~g~iDilvnnAg~   95 (240)
T d2bd0a1          72 VRRLT---THIVERYGHIDCLVNNAGV   95 (240)
T ss_dssp             HHHHH---HHHHHHTSCCSEEEECCCC
T ss_pred             HHHHH---HHHHHHcCCcceeeccccc
Confidence            77777   6666666555678877543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.37  E-value=0.01  Score=50.35  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+.+|+.++.+...
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~   45 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK   45 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34567766665 77999999999999999999999987665543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.021  Score=47.60  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG  146 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~  146 (358)
                      +++|++-|-| .+.||+++|+.|++.|++|.+.+|+++..+...+.+             +.++-+=+....+++.++  
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~-------------~~~~~~Dv~~~~~v~~~~--   67 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIG-------------GAFFQVDLEDERERVRFV--   67 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHT-------------CEEEECCTTCHHHHHHHH--
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------------CeEEEEeCCCHHHHHHHH--
Confidence            5667787776 589999999999999999999999876533222211             112222223455666666  


Q ss_pred             cccccccCCCCCEEEEcc
Q 018303          147 KHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s  164 (358)
                       ++..+...+=.++||.+
T Consensus        68 -~~~~~~~G~iDiLVnnA   84 (248)
T d2d1ya1          68 -EEAAYALGRVDVLVNNA   84 (248)
T ss_dssp             -HHHHHHHSCCCEEEECC
T ss_pred             -HHHHHhcCCCCeEEEeC
Confidence             55555555546677764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.34  E-value=0.0091  Score=50.38  Aligned_cols=87  Identities=13%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~  142 (358)
                      ++++|++-|.|. +.||.++|+.|++.|++|.+.+|+.+. .+.+.+       .+.+  ...+++.+.+  .+..+++.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~-------~~~~--~g~~~~~~~~Dvt~~~~v~~   74 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE-------EIKK--VGGEAIAVKGDVTVESDVIN   74 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHH--TTCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-------HHHh--cCCcEEEEEccCCCHHHHHH
Confidence            577777777764 889999999999999999999987542 232221       1111  1123343333  23455666


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++   ++..+...+=.++||.+.
T Consensus        75 ~~---~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          75 LV---QSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             HH---HHHHHHHSCCCEEEECCC
T ss_pred             HH---HHHHHHhCCCCEeeccce
Confidence            66   555444444466777643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.015  Score=48.77  Aligned_cols=87  Identities=17%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhcc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACG  146 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~~  146 (358)
                      +|++-|-|. +.||.++|+.|++.|++|.+.+|+.++.+...+.       +.+......+..+.+  .+..+++.++  
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~~~--   73 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA-------LHEQFEPQKTLFIQCDVADQQQLRDTF--   73 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HTTTSCGGGEEEEECCTTSHHHHHHHH--
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhcCCCcEEEEEeecCCHHHHHHHH--
Confidence            456666666 7799999999999999999999998776554321       111111223333333  3456677777  


Q ss_pred             cccccccCCCCCEEEEccCC
Q 018303          147 KHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       147 ~~~~~~~l~~~~~vi~~s~~  166 (358)
                       +.+.+.+.+=.++||.+..
T Consensus        74 -~~~~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          74 -RKVVDHFGRLDILVNNAGV   92 (254)
T ss_dssp             -HHHHHHHSCCCEEEECCCC
T ss_pred             -HHHHHHcCCcCeecccccc
Confidence             5555555555678887654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.28  E-value=0.0095  Score=50.14  Aligned_cols=56  Identities=13%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEee
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAML  134 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~v  134 (358)
                      |||.|.|. |.+|+.+++.|...|++|++.+|+.-...        -..+++++++  +.|+|+-+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~--------d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDIT--------NVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTT--------CHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCC--------CHHHHHHHHHHcCCCEEEeec
Confidence            78999987 99999999999999999999998642211        1123345554  468877665

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.26  E-value=0.0087  Score=51.95  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .++|.|||+|--|...|..|++.|++|++++.+..-
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            479999999999999999999999999999987653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0069  Score=51.32  Aligned_cols=44  Identities=25%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .+++|++-|.|+ +.||.++|+.|++.|++|++.+|+.++.+...
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV   55 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            367788888877 56999999999999999999999987766553

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.22  E-value=0.016  Score=50.69  Aligned_cols=67  Identities=21%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC---------------CCccCCCHHHHhhcCCEEE
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---------------GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~---------------g~~~~~~~~~~~~~aDivi  131 (358)
                      ..+++|.|.|. |.||+.+++.|.+.|++|.+..|+..+.+.+...               .+.-..++++++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            44789999965 9999999999999999999988887654433210               1112234556777888877


Q ss_pred             Eee
Q 018303          132 AML  134 (358)
Q Consensus       132 ~~v  134 (358)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.21  E-value=0.019  Score=48.06  Aligned_cols=113  Identities=19%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh----CCCc---cCCCHHHHh--hcCCEEEEeeCChh
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK---YQPSPDEVA--ASCDVTFAMLADPE  138 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~--~~aDivi~~vp~~~  138 (358)
                      ..+++|.=+|+|. |. ++..+++.|.+|+++|.++..++..++    .++.   ...+..+.+  ...|+|+... ...
T Consensus       119 ~~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani-~~~  195 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL-YAE  195 (254)
T ss_dssp             CTTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC-CHH
T ss_pred             CccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc-ccc
Confidence            4567999999997 53 455677889999999999988766543    2321   233555554  3578888776 466


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      ....++   +.+...++||..++- |.....+.+.+.+.+.+.|...+.
T Consensus       196 ~l~~l~---~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         196 LHAALA---PRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             HHHHHH---HHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred             cHHHHH---HHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence            677777   777788999987763 222334567788888887766544

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.21  E-value=0.0033  Score=46.90  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHH-HCCCcEEE-EcCCccchh
Q 018303           72 RIGFLGMGIMGTPMAQNLL-KAGCDVTV-WNRTKSKCD  107 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~-~~g~~V~~-~~~~~~~~~  107 (358)
                      +|.|+|+|++|+.+++.+. ..|+++.+ +|-++++..
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G   42 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG   42 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC
Confidence            7999999999999998764 34677664 677766543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.023  Score=47.22  Aligned_cols=44  Identities=14%  Similarity=0.072  Sum_probs=35.7

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .+++|++-|-|. +.||.++|+.|++.|++|++.+|+.++.+...
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            456667767765 77999999999999999999999887765443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.18  E-value=0.012  Score=49.74  Aligned_cols=86  Identities=16%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhh
Q 018303           67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~  142 (358)
                      .+++|++-|-| .+.||.++|+.|++.|++|++.+++.+ ..+.+.+       .+.+  ...++..+.+  .+..+++.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------~~~~--~g~~~~~~~~D~~~~~~v~~   85 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVA-------AIKK--NGSDAACVKANVGVVEDIVR   85 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHH--TTCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-------HHHh--hCCceeeEeCCCCCHHHHHH
Confidence            57777887776 599999999999999999999887643 2222221       1111  1233444443  23455666


Q ss_pred             hhcccccccccCCCCCEEEEcc
Q 018303          143 VACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      ++   +++.+...+=.++||..
T Consensus        86 ~~---~~~~~~~g~idilV~na  104 (272)
T d1g0oa_          86 MF---EEAVKIFGKLDIVCSNS  104 (272)
T ss_dssp             HH---HHHHHHHSCCCEEEECC
T ss_pred             HH---HHHHHHhCCCCcccccc
Confidence            66   44544444445666664

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0094  Score=49.75  Aligned_cols=45  Identities=18%  Similarity=0.073  Sum_probs=36.3

Q ss_pred             CCCCCeEEEE-cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh
Q 018303           67 DELPGRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS  111 (358)
Q Consensus        67 ~~~~~~IgII-G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~  111 (358)
                      .+.+|++-|. |.+.||+++|+.|++.|++|++.+|++++.+.+.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK   48 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            3566676666 55999999999999999999999999876665544

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.17  E-value=0.094  Score=41.68  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             HHHHHHHHHCCCcEEEEcCCcc----chhhHHhCCCccCCCHHHHhhcCCEEEEee-CChhhHhhhhcccccccccCCCC
Q 018303           83 TPMAQNLLKAGCDVTVWNRTKS----KCDPLISLGAKYQPSPDEVAASCDVTFAML-ADPESAMDVACGKHGAASGMGPG  157 (358)
Q Consensus        83 ~~~a~~l~~~g~~V~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~aDivi~~v-p~~~~~~~~~~~~~~~~~~l~~~  157 (358)
                      -..++.|.+.|++|.+=.--..    .-+.+.+.|+...++.++++.++|+|+-.- |...+   .-   .+.+..+++|
T Consensus        20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e---~~---~~ei~~lk~g   93 (194)
T d1l7da2          20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE---EG---TDEVALIKEG   93 (194)
T ss_dssp             HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG---GS---CCGGGGSCTT
T ss_pred             HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc---cc---hhHhhhccCc
Confidence            4567889999999997432111    113455678888889999999999887655 32221   11   3345789999


Q ss_pred             CEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCC
Q 018303          158 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK  194 (358)
Q Consensus       158 ~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  194 (358)
                      +++|..  -.+.....+.+.+.++++..++.....+.
T Consensus        94 ~~li~~--l~p~~~~~~~~~l~~~~it~~a~e~ipRi  128 (194)
T d1l7da2          94 AVLMCH--LGALTNRPVVEALTKRKITAYAMELMPRI  128 (194)
T ss_dssp             CEEEEE--CCGGGCHHHHHHHHHTTCEEEEGGGCCCS
T ss_pred             eEEEEe--cccccchhHHHHHHhcCceEEeeeccccc
Confidence            999954  45666667888899999998887665443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.16  E-value=0.015  Score=48.98  Aligned_cols=89  Identities=11%  Similarity=0.043  Sum_probs=56.3

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHH-hhcCCEEEEee--CChhhHhhh
Q 018303           68 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        68 ~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~v--p~~~~~~~~  143 (358)
                      +++|.+-|-| .+.||+++|+.|++.|++|.+.+|+.++.+...++       +.+. ....++..+.+  ....+++.+
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvt~~~~v~~~   75 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ-------ILAAGVSEQNVNSVVADVTTDAGQDEI   75 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCcCceEEEEccCCCHHHHHHH
Confidence            4555555555 58999999999999999999999998776654321       1110 01122444433  345566777


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +   ++..+...+=.++||....
T Consensus        76 ~---~~~~~~~g~iDilvnnAG~   95 (264)
T d1spxa_          76 L---STTLGKFGKLDILVNNAGA   95 (264)
T ss_dssp             H---HHHHHHHSCCCEEEECCC-
T ss_pred             H---HHHHHHhCCCCEeeccccc
Confidence            7   5555555566788877543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.023  Score=47.26  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  136 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~  136 (358)
                      ++..+|.|||+|.+|+.++..|+..|. +++++|.+.=....+..+        |-..+....+.+.  +.|+-+...+.
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            556799999999999999999999997 688888764333333222        2111111222221  36666666653


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV  190 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~  190 (358)
                      ........       ..+....+++++. ........+.+.....++.++.+.+
T Consensus       108 ~~~~~~~~-------~~~~~~divid~~-d~~~~~~~in~~~~~~~ip~i~g~~  153 (247)
T d1jw9b_         108 LLDDAELA-------ALIAEHDLVLDCT-DNVAVRNQLNAGCFAAKVPLVSGAA  153 (247)
T ss_dssp             CCCHHHHH-------HHHHTSSEEEECC-SSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hhhhcccc-------ccccccceeeecc-chhhhhhhHHHHHHHhCCCcccccc
Confidence            22222221       1233456777664 3344455666667677777776543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.013  Score=48.28  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCC-------CccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLG-------AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +.+++|.|.|+ |.+|+.+++.|.+.|.  +|.+.+|++..........       ..-.+++.++++.+|+++.++.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            45578999965 9999999999988884  8999998765432211111       1112344555667788777663

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.97  E-value=0.048  Score=39.00  Aligned_cols=70  Identities=7%  Similarity=0.039  Sum_probs=51.7

Q ss_pred             CeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303           71 GRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA  140 (358)
Q Consensus        71 ~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~  140 (358)
                      ++|||+|+-          .-...+.+.|...|.+|.+||+.-...+.  ..+.....+++++.+.+|+|++.. .....
T Consensus        16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~-~~~~~   92 (108)
T d1dlja3          16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNR-YDNEL   92 (108)
T ss_dssp             CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSS-CCGGG
T ss_pred             CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcC-CchHH
Confidence            589999973          56778999999999999999997654321  234566789999999999877655 34444


Q ss_pred             hhh
Q 018303          141 MDV  143 (358)
Q Consensus       141 ~~~  143 (358)
                      ..+
T Consensus        93 ~~~   95 (108)
T d1dlja3          93 QDV   95 (108)
T ss_dssp             GGG
T ss_pred             Hhc
Confidence            433

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.95  E-value=0.03  Score=43.25  Aligned_cols=67  Identities=15%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             CCCeEEEEcC--ChhHHHHHHHHHHCCCcEEEEcCCccch-h----h----HHhC--CCccCCCHHHHhhcCCEEEEeeC
Q 018303           69 LPGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSKC-D----P----LISL--GAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~----~----~~~~--g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      .+.+|++||=  .++-.++...+..+|+++.++.+..-.. .    .    ....  .+....+++++++++|+|..-.-
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~~   81 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVW   81 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccce
Confidence            4679999993  5899999999999999999988743211 1    1    1111  24567899999999999988663

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.90  E-value=0.016  Score=48.84  Aligned_cols=66  Identities=23%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH---------HhCCCcc-------CCCHHHHhhcCCEEEE
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL---------ISLGAKY-------QPSPDEVAASCDVTFA  132 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~---------~~~g~~~-------~~~~~~~~~~aDivi~  132 (358)
                      .+||.|+|+ |.+|+.+++.|.+.|++|++.+|++......         ...++..       ..+..+.++.+|.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            478999986 9999999999999999999999976543211         1112221       1123456678888887


Q ss_pred             eeC
Q 018303          133 MLA  135 (358)
Q Consensus       133 ~vp  135 (358)
                      +..
T Consensus        83 ~~~   85 (307)
T d1qyca_          83 TVG   85 (307)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.88  E-value=0.019  Score=47.33  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      +++|++-|-|. +.||+++|+.|++.|++|.+.+|+.+..+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~   42 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK   42 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            45678888876 77999999999999999999999875543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.017  Score=45.30  Aligned_cols=44  Identities=18%  Similarity=0.117  Sum_probs=36.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  113 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g  113 (358)
                      +.+|.|+|. |.+|....+.++..|.+|++.++++++.+.+.+.|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG   73 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG   73 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence            468999955 66999999999999999999999988877766554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.76  E-value=0.014  Score=50.92  Aligned_cols=39  Identities=21%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      ++|||.|.| .|-||+.+++.|.+.|++|.+++|+..+..
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~   46 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVP   46 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccH
Confidence            357999997 699999999999999999999999776543

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.69  E-value=0.055  Score=41.33  Aligned_cols=65  Identities=17%  Similarity=0.046  Sum_probs=45.8

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHCCCcEEEEcCCccc---hhhHHhC--CCccCCCHHHHhhcCCEEEEe
Q 018303           69 LPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSK---CDPLISL--GAKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        69 ~~~~IgIIG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~---~~~~~~~--g~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+.+|++||=   +++..+++..+..+|+++.++.+.+..   .......  .+..+++++++++++|+|..-
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            4679999997   558999999999999997655442211   1111112  355677999999999988754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.63  E-value=0.025  Score=46.39  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ....++|.|||.|..|...|..|++.|++|++++++.+-
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            345679999999999999999999999999999987654

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.59  E-value=0.067  Score=40.96  Aligned_cols=109  Identities=14%  Similarity=0.040  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cccchhhhccccccccCCCC---------CCCchhhHHHH
Q 018303          243 VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLKGPSMIESLYP---------TAFPLKHQQKD  309 (358)
Q Consensus       243 ~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~~kd  309 (358)
                      .|.-...+...+.|+..++++.|.++++++....-+    +..+.--...+..+.++...         ....+......
T Consensus        34 ~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t  113 (155)
T d1txga1          34 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKT  113 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccchHHHHH
Confidence            478888888999999999999999998876533322    11221111223333332110         01123445666


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhCC
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAKK  358 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~~  358 (358)
                      ...+.++++++++++|+++++++++..       +.+...++..+-.||
T Consensus       114 ~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L~~Rk  155 (155)
T d1txga1         114 AEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELATFK  155 (155)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHHHcCC
Confidence            788999999999999999999988854       446666666655443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.57  E-value=0.02  Score=44.70  Aligned_cols=47  Identities=30%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY  116 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~  116 (358)
                      +.+|.|-| .|.+|....+..+..|.+|+...+++++.+.+.+.|...
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~   71 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE   71 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc
Confidence            34688887 599999999999999999999999988888777665543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.56  E-value=0.031  Score=46.49  Aligned_cols=86  Identities=12%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV  143 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~  143 (358)
                      .+++|++-|-|. +.||+++|+.|++.|++|.+.+|++...  ...       ..++.  ..++..+.+  .+..+++.+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~-------~~~~~--g~~~~~~~~Dvs~~~~v~~~   70 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEA-------AIRNL--GRRVLTVKCDVSQPGDVEAF   70 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHH-------HHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHH-------HHHHc--CCcEEEEEeeCCCHHHHHHH
Confidence            356667777766 6799999999999999999999976421  111       01111  123444433  345666777


Q ss_pred             hcccccccccCCCCCEEEEccCC
Q 018303          144 ACGKHGAASGMGPGKGYVDVSTV  166 (358)
Q Consensus       144 ~~~~~~~~~~l~~~~~vi~~s~~  166 (358)
                      +   ++..+...+=.++||.+..
T Consensus        71 ~---~~~~~~~G~iDilVnnAG~   90 (247)
T d2ew8a1          71 G---KQVISTFGRCDILVNNAGI   90 (247)
T ss_dssp             H---HHHHHHHSCCCEEEECCCC
T ss_pred             H---HHHHHHcCCCCEEEECCCC
Confidence            6   5555555555677777543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.035  Score=48.17  Aligned_cols=65  Identities=20%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C-------CccCCCHHH-HhhcCCEEEEeeC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-------AKYQPSPDE-VAASCDVTFAMLA  135 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g-------~~~~~~~~~-~~~~aDivi~~vp  135 (358)
                      |||.|.|. |.||+.+++.|.+.|+ +|++.|+.......+.+. +       +.-..+..+ +.+++|+|+-+.-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            68999965 9999999999999884 899988865544433221 1       111112233 6677999887663

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.52  E-value=0.022  Score=47.18  Aligned_cols=41  Identities=22%  Similarity=0.178  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD  107 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~  107 (358)
                      .+.+|++-|-|. +.||+++|+.|++.|++|.+.+|+.+..+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            356677777776 57999999999999999999999876544

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.50  E-value=0.048  Score=45.35  Aligned_cols=86  Identities=14%  Similarity=0.186  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK  147 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~  147 (358)
                      ..+++|++||.-    .+...+.+.|.++.+++++++.       |.......++++.+||+|++.-  +.-+.+-+   
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl---  183 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITC--ASVVDKTL---  183 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH---
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEe--chhhcCCH---
Confidence            457899999864    4566677888999999998753       2233445678999999999987  44555555   


Q ss_pred             ccccccCCCCCEEEEccCCChh
Q 018303          148 HGAASGMGPGKGYVDVSTVDGD  169 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~~~~~  169 (358)
                      +.+++..++.+.++-++-..+.
T Consensus       184 ~~LL~~~~~a~~vvl~GPS~p~  205 (251)
T d2h1qa1         184 PRLLELSRNARRITLVGPGTPL  205 (251)
T ss_dssp             HHHHHHTTTSSEEEEESTTCCC
T ss_pred             HHHHHhCCcCCEEEEECCCccc
Confidence            6677777777766666555444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.45  E-value=0.042  Score=43.21  Aligned_cols=88  Identities=18%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-----CCC-HHHHh-----hcCCEEEEeeCCh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPS-PDEVA-----ASCDVTFAMLADP  137 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-----~~~-~~~~~-----~~aDivi~~vp~~  137 (358)
                      +.+|.|.|+ |.+|...++..+..|.+|++..+++++.+.+.+.|...     ..+ .+++.     ...|+|+-++. .
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~  108 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-G  108 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-H
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-c
Confidence            458989888 77999999999999999999999888887777766431     112 22222     23788888884 4


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..+..       ++.++++..++.++.
T Consensus       109 ~~~~~~-------~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         109 EFLNTV-------LSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHHH-------GGGEEEEEEEEECCC
T ss_pred             hhhhhh-------hhhccCCCeEEeecc
Confidence            433333       356777777777653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.41  E-value=0.036  Score=47.59  Aligned_cols=94  Identities=14%  Similarity=0.008  Sum_probs=55.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVA  144 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~~~  144 (358)
                      .+.+|++-|-|. +.||+++|+.|++.|++|.+.|++.+.......  ..... -.++.-...-.+...+......+.++
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v   81 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKG--SSAADKVVEEIRRRGGKAVANYDSVEAGEKLV   81 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCC--SHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhh--HHHHHHHHHHHhhcccccccccchHHHHHHHH
Confidence            456667766666 779999999999999999999987653211000  00000 01122223334444444555666666


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         +...+...+=.++||.+.
T Consensus        82 ---~~~~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          82 ---KTALDTFGRIDVVVNNAG   99 (302)
T ss_dssp             ---HHHHHHTSCCCEEEECCC
T ss_pred             ---HHHHHHcCCCCEEEECCc
Confidence               555555555567777643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.40  E-value=0.06  Score=44.82  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh---hhHhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP---ESAMD  142 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~---~~~~~  142 (358)
                      ++.+|+|-|-|. +.||..+|+.|++.|.+|++.+|+.++.+.+.+        +........+.+.++-.+   .+.+.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~   73 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE--------LKAINPKVNITFHTYDVTVPVAESKK   73 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH--------HHHHCTTSEEEEEECCTTSCHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH--------HHhhCCCCCEEEEEeecCCCHHHHHH
Confidence            466788888876 579999999999999999888776665443322        122233344555554322   34666


Q ss_pred             hhcccccccccCCCCCEEEEccC
Q 018303          143 VACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       143 ~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      ++   +.+.+...+=.++||.+.
T Consensus        74 ~~---~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          74 LL---KKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             HH---HHHHHHHSCCCEEEECCC
T ss_pred             HH---HHHHHHcCCCCEEEeCCC
Confidence            66   555555544457787754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.38  E-value=0.022  Score=49.51  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCcc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKS  104 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~  104 (358)
                      ..+||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3478999999999999999998765  69999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.032  Score=48.47  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=28.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      |||.|+|. |-+|+.+++.|.+.|++|+++||.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            68999955 999999999999999999999863

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.30  E-value=0.036  Score=45.95  Aligned_cols=81  Identities=16%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             EEEE--cCChhHHHHHHHHHHCCCcEEEE-cCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhhccc
Q 018303           73 IGFL--GMGIMGTPMAQNLLKAGCDVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVACGK  147 (358)
Q Consensus        73 IgII--G~G~iG~~~a~~l~~~g~~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~~~~  147 (358)
                      |.+|  |.+.||+++|+.|++.|++|.+. .|+.+..+.+.+       .+++.  ..+++.+.+  .+..+++.++   
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~-------~~~~~--g~~~~~~~~Dv~~~~~v~~~~---   70 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK-------QIEAY--GGQAITFGGDVSKEADVEAMM---   70 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-------HHHHH--TCEEEEEECCTTSHHHHHHHH---
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-------HHHHc--CCcEEEEeCCCCCHHHHHHHH---
Confidence            5555  56889999999999999999875 556555444332       11111  123444433  3445666676   


Q ss_pred             ccccccCCCCCEEEEccC
Q 018303          148 HGAASGMGPGKGYVDVST  165 (358)
Q Consensus       148 ~~~~~~l~~~~~vi~~s~  165 (358)
                      ++..+...+=.++||.+.
T Consensus        71 ~~~~~~~g~iDiLVnnAg   88 (244)
T d1edoa_          71 KTAIDAWGTIDVVVNNAG   88 (244)
T ss_dssp             HHHHHHSSCCSEEEECCC
T ss_pred             HHHHHHcCCCCccccccc
Confidence            555555555567777753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.25  E-value=0.019  Score=48.19  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCc-cchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhhh
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDVA  144 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~~  144 (358)
                      ++|++-|-|. +.||+++|+.|++.|++|.+.+|+. +..+.+.+       .+.+. ...+++.+.+  .+..+++.++
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~-------~~~~~-~g~~~~~~~~Dv~~~~~v~~~~   74 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA-------GLAAQ-HGVKVLYDGADLSKGEAVRGLV   74 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH-------HHHHH-HTSCEEEECCCTTSHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-------HHHHh-cCCcEEEEECCCCCHHHHHHHH
Confidence            4555555555 6799999999999999999999874 33333221       11111 1234544443  2345566666


Q ss_pred             cccccccccCCCCCEEEEccC
Q 018303          145 CGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       145 ~~~~~~~~~l~~~~~vi~~s~  165 (358)
                         ++..+...+=.++||.+.
T Consensus        75 ---~~~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          75 ---DNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             ---HHHHHHHSCCSEEEECCC
T ss_pred             ---HHHHHHhCCCcEEEeecc
Confidence               555554444466776643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.25  E-value=0.013  Score=46.31  Aligned_cols=89  Identities=21%  Similarity=0.130  Sum_probs=56.6

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC----CHHHHh-----hcCCEEEEeeCChh
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP----SPDEVA-----ASCDVTFAMLADPE  138 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~----~~~~~~-----~~aDivi~~vp~~~  138 (358)
                      .+.+|.|.| .|.+|....+.++..|.+|+...+++++.+.+.+.|...+.    ..++..     +..|+|+-++. ..
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-g~  109 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-GR  109 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-TT
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC-ch
Confidence            345899998 59999999999999999999999998888877766543221    111111     13566666663 22


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccC
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      .....       +..++++..++.++.
T Consensus       110 ~~~~~-------l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         110 TLATV-------LSRMRYGGAVAVSGL  129 (176)
T ss_dssp             THHHH-------HHTEEEEEEEEECSC
T ss_pred             hHHHH-------HHHhCCCceEEEeec
Confidence            22222       345566666666543

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.08  Score=41.08  Aligned_cols=23  Identities=22%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      .+|+|+|+|.+|+.+++.+....
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhH
Confidence            37999999999999999998643

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.08  E-value=0.24  Score=36.06  Aligned_cols=108  Identities=13%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC  145 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~  145 (358)
                      ..||-|-|. |+.|+..+++..+.|-+|.+ +.+  .+... ...|+..+++..|+.+  ++|.-++.||.+.....++ 
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtP--gKgG~-~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~-   90 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTP--GKGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIN-   90 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT--TCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH-
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeecc--CCCCc-cccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHH-
Confidence            348999998 99999999999999988764 443  22211 1236788899999876  5999999998544444444 


Q ss_pred             ccccccccCCCCCEEEEccC-CChhHHHHHHHHHHhc-CCeEe
Q 018303          146 GKHGAASGMGPGKGYVDVST-VDGDTSKLINGHIKAT-GASFL  186 (358)
Q Consensus       146 ~~~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~l~~~-~~~~~  186 (358)
                        +.+-+.+   ..++.++- .++.|...+...+.+. +..++
T Consensus        91 --EAi~agI---~liV~ITEgIPv~Dm~~i~~~~~~~~~~~li  128 (130)
T d1euca1          91 --EAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI  128 (130)
T ss_dssp             --HHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred             --HHHhCCC---CEEEEecCCCCHHHHHHHHHHHHhCCCcEEe
Confidence              4443333   23444444 4555666666655333 34444

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.04  E-value=0.028  Score=43.47  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~  104 (358)
                      ++||.|||.|..|..+|..|++.+  .+|+++++++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            579999999999999999999877  47888888763

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.04  E-value=0.026  Score=47.24  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      .|.|||.|-+|.+.|..|++.|.+|++++++.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.94  E-value=0.022  Score=47.70  Aligned_cols=42  Identities=17%  Similarity=0.083  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEE-cCCccchhh
Q 018303           67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVW-NRTKSKCDP  108 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~-~~~~~~~~~  108 (358)
                      .+.+|++-|-|. +.||.++|+.|++.|++|.+. +++.+..+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~   46 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEE   46 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHH
Confidence            466777777765 679999999999999999885 555444333

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.90  E-value=0.0051  Score=50.66  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcE
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDV   96 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V   96 (358)
                      |||.|||+|-+|...|..|++.|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            68999999999999999999999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.86  E-value=0.031  Score=46.54  Aligned_cols=35  Identities=31%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~  105 (358)
                      ++|.|||.|--|..+|..|++.|. +|.+++++++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            589999999999999999999995 89999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.83  E-value=0.03  Score=45.83  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~  104 (358)
                      +|.|||.|.-|...|..|++.|+ +|+++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            69999999999999999999996 7999998653

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.83  E-value=0.055  Score=42.79  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcC--ChhHHHHHHHHHHCCCcEEEEcCCccc-----hhhHH----h--CCCccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLI----S--LGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~~----~--~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +.+.+|++||=  -++..+++..+..+|+++.++.+..-.     .+.+.    .  ..+....+++++++++|+|..-.
T Consensus         3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~   82 (185)
T d1dxha2           3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV   82 (185)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence            55679999994  489999999999999999999874211     11111    1  13456789999999999988765

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.81  E-value=0.021  Score=48.29  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +|.|||+|..|..+|..|++.|++|.+++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.76  E-value=0.03  Score=45.64  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--CCCcEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~--~g~~V~~~~~~~~~  105 (358)
                      .||+|||.|.-|...|..|++  .|++|+++++.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            489999999999999999965  47899999987653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.045  Score=36.51  Aligned_cols=45  Identities=31%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC
Q 018303           69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG  113 (358)
Q Consensus        69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g  113 (358)
                      ++.+|.|.|. |.+|....+.++..|++|++..+++++.+.+.+.|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            3457888865 99999999999999999999999998888776543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.66  E-value=0.033  Score=46.23  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=28.1

Q ss_pred             CeEEEE-c-CChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~IgII-G-~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      |||.|| | .+.||+++|+.|++.|++|++.+|+.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            455555 5 578999999999999999999998754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.033  Score=47.87  Aligned_cols=32  Identities=31%  Similarity=0.495  Sum_probs=28.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      |||.|.|. |-+|+.+++.|.+.|++|+++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            68999965 999999999999999999998863

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.49  E-value=0.023  Score=45.79  Aligned_cols=63  Identities=22%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCccCCCHHHHh----hcCCEEEEeeC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVA----ASCDVTFAMLA  135 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~aDivi~~vp  135 (358)
                      .|||.|.|+ |.+|+.+++.|.+.|+  +|....|++........   ....+..+..    ..+|.|+.|+.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~---~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLD---NPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEE---CCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhccccc---ccccchhhhhhccccchheeeeeee
Confidence            369999987 9999999999999997  56656665432111000   1122333332    34688888763

>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Conserved hypothetical protein MTH1747
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.46  E-value=0.14  Score=36.66  Aligned_cols=100  Identities=13%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch--hhhccccccccCCCCCCCchhhHHHHHH
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP--MYSLKGPSMIESLYPTAFPLKHQQKDLR  311 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~kd~~  311 (358)
                      |.+..+|++...+..++.+++.|++..+++.|+..+.+..+ ..+....+  ....+.+++..       .......+..
T Consensus         1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~~~l-~~s~~~~~~~~~~~~v~~~~~-------ha~Rr~~EM~   72 (112)
T d1i36a1           1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEML-EYTEGNDFRESAISRLKSSCI-------HARRRYEEMK   72 (112)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTSCSSTHHHHHHHHHHHHH-------THHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHcCCccHHHHHHHHhcCCcc-------hhhHHHHHHH
Confidence            56889999999999999999999999999999988766544 33221111  11111222221       1123455677


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018303          312 LALGLAESVSQSTPIAAAANELYKVAKSHGL  342 (358)
Q Consensus       312 ~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~  342 (358)
                      .+.++.++. +++.+.+++.+++++..+-+.
T Consensus        73 Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~  102 (112)
T d1i36a1          73 EVQDMLAEV-IDPVMPTCIIRIFDKLKDVKV  102 (112)
T ss_dssp             HHHHHHHTT-SCCSHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHh-CCchHHHHHHHHHHHHHhcCC
Confidence            788888774 888899999998888776543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.41  E-value=0.24  Score=39.97  Aligned_cols=98  Identities=11%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc--------cchhhH----HhC--CCccCCCHHHHhhcCCEEE
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK--------SKCDPL----ISL--GAKYQPSPDEVAASCDVTF  131 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~--------~~~~~~----~~~--g~~~~~~~~~~~~~aDivi  131 (358)
                      .+++.||.|+|+|.-|..+++.+.+.+. +++.+|+..        ...+..    .+.  ......++.+++..+|+++
T Consensus        23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~  102 (222)
T d1vl6a1          23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI  102 (222)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred             ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceec
Confidence            5667799999999999999999988775 688888751        111111    111  1223457788888888766


Q ss_pred             EeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303          132 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS  171 (358)
Q Consensus       132 ~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~  171 (358)
                      ....     ..++  .++....|.+.-+|.-+|+-.+..+
T Consensus       103 g~~~-----~~~~--~~e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1         103 GVSR-----GNIL--KPEWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             ECSC-----SSCS--CHHHHTTSCSSCEEEECCSSSCSSC
T ss_pred             cccc-----cccc--cHHHHhhcCCCCEEEecCCCccchh
Confidence            6652     3333  2334456677788888887665443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.044  Score=46.70  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ..||.|||+|--|..-|..|++.|++|+++..+..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            35899999999999999999999999999987643

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=93.38  E-value=0.039  Score=42.15  Aligned_cols=62  Identities=18%  Similarity=0.064  Sum_probs=48.0

Q ss_pred             CCeEEEEcC---ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303           70 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        70 ~~~IgIIG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +++|++||=   +++..+++..+..+|+++.++.+..-..   .+..+....+++++++++|+|..-.
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~---~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD---EENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc---cccceeEEEechhccccCceeeeeE
Confidence            579999996   6899999999999999999887743211   1223556678999999999987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.28  E-value=0.037  Score=46.24  Aligned_cols=40  Identities=13%  Similarity=0.021  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcC-Ch--hHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           67 DELPGRIGFLGM-GI--MGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        67 ~~~~~~IgIIG~-G~--iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      .+++|++-|.|+ |.  ||.++|+.|++.|++|++.+++.++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            467789999996 64  99999999999999999999886653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.043  Score=44.41  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      -|.|||.|.-|...|..|++.|++|+++++++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            389999999999999999999999999999764

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.22  E-value=0.28  Score=38.69  Aligned_cols=97  Identities=11%  Similarity=0.102  Sum_probs=66.1

Q ss_pred             HHHHHHHHCCCcEEEEcCCccc----hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCE
Q 018303           84 PMAQNLLKAGCDVTVWNRTKSK----CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG  159 (358)
Q Consensus        84 ~~a~~l~~~g~~V~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~  159 (358)
                      ..++.|.+.|++|.+=.--...    -+...+.|+...++.+++. ++|+|+-.-|.+          .+.++.|++|++
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~----------~~e~~~lk~~~~   89 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL----------PAEYDLMQKDQL   89 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC----------GGGGGGCCTTCE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC----------HHHHHhhhcCce
Confidence            4677888899999985322111    1334455888888877877 589886555422          222467899999


Q ss_pred             EEEccCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303          160 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS  193 (358)
Q Consensus       160 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  193 (358)
                      +|  +-..+....++.+.+.++++..++......
T Consensus        90 li--~~l~p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          90 LF--TYLHLAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             EE--ECCCGGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EE--EecCcccchHHHHHHHHcCCEEEEeeeccc
Confidence            99  445566566788888899998888765543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.10  E-value=0.04  Score=42.85  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=27.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      |||||=|+|+||+.+.|.+...+.+|...+-
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC
Confidence            5899999999999999999888898887653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.08  E-value=0.052  Score=39.28  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHC---CCcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKA---GCDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~---g~~V~~~~~~~~~  105 (358)
                      .+++.|||.|.+|..+|..+.+.   |.+|.++.+.+.-
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            36899999999999999887654   7899999886543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.039  Score=47.16  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      .|.|||+|--|...|+.|++.|++|.+++.+..-
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            6899999999999999999999999999987653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.88  E-value=0.054  Score=45.99  Aligned_cols=32  Identities=38%  Similarity=0.687  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~  103 (358)
                      +|.|||.|-+|.+.|..|++.|. +|++++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999995 799999864

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.71  E-value=0.07  Score=40.81  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CCCCeEEEEcC---ChhHHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCC--CccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLG--AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~---G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g--~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +.+.+|+|||=   +++..+++..+..+|+++.++.+..-..     ..+.+.+  +..+.+++++++++|+|..-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            45679999998   6899999999999999999988743221     1222222  3456799999999998877653

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.68  E-value=0.66  Score=39.09  Aligned_cols=119  Identities=12%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-ccchhhhccccccccCCC------CCC
Q 018303          234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLY------PTA  300 (358)
Q Consensus       234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~------~~~  300 (358)
                      ......+.+.+.+....+.++++.+.+.++      .+++..++.++++.+. ..|++++...+.+.+...      .+.
T Consensus       138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~  217 (297)
T d2pgda1         138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDF  217 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHH
Confidence            456677889999999999999999999865      4789999999999874 456776653333322111      111


Q ss_pred             C--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          301 F--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       301 ~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +  .+.....+.+.++..+-+.|+|+|.+.+....+....+    +.-...++++.|+
T Consensus       218 ~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~----~~lp~~lIQAqRD  271 (297)
T d2pgda1         218 FKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRH----AMLPANLIQAQRD  271 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHC----SSCTHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcc----CCchhHHHHHHHH
Confidence            1  23344555688999999999999999999876654443    2335678877765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.55  E-value=0.028  Score=40.14  Aligned_cols=36  Identities=6%  Similarity=-0.093  Sum_probs=29.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      +..+++|.|||.|+-|.-+|.-|+..+-+++...|.
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            466789999999999999999998877665544443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.52  E-value=0.06  Score=45.99  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ..|.|||+|.-|..+|..|++.|.+|.+++++++-
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV   42 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            47999999999999999999999999999987654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.42  E-value=0.058  Score=42.78  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTK  103 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~  103 (358)
                      |||.|||.|..|..+|..|++.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999999999999999886  45788888754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.27  E-value=0.036  Score=45.15  Aligned_cols=35  Identities=26%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-------CcEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~~  105 (358)
                      .+|+|||.|.-|.+.|..|.+.|       ++|.+|++.+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            48999999999999999999877       479999987654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.15  Score=47.13  Aligned_cols=115  Identities=15%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD  136 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~  136 (358)
                      +...+|.|||+|.+|..+++.|...|. +++++|.+.-....+..+        |-..+....+.+.  +.|+-+..+. 
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~-  101 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE-  101 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES-
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc-
Confidence            445699999999999999999999995 688998764333333221        1111111111121  1333333332 


Q ss_pred             hhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303          137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA  188 (358)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~  188 (358)
                       .....+.   ......++.-.+||++ .........+.+.+.+.++.++.+
T Consensus       102 -~~~~~~~---~~~~~~~~~~dvVv~~-~~~~~~~~~l~~~c~~~~ip~i~~  148 (529)
T d1yova1         102 -ESPENLL---DNDPSFFCRFTVVVAT-QLPESTSLRLADVLWNSQIPLLIC  148 (529)
T ss_dssp             -SCHHHHH---HSCGGGGGGCSEEEEE-SCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             -CCchhhh---hhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence             1222222   1111223334566654 445555566777777776666654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.02  E-value=0.074  Score=44.45  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      -|.|||.|-+|...|..|++.|++|+++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999853

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.94  E-value=0.15  Score=42.58  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCcEEEEcC-Cccchh
Q 018303           71 GRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNR-TKSKCD  107 (358)
Q Consensus        71 ~~IgII--G~G~iG~~~a~~l~~~g~~V~~~~~-~~~~~~  107 (358)
                      +.|+||  |.+.||.++|+.|++.|++|.+.++ +.+..+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   41 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN   41 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHH
Confidence            358888  5578999999999999999988655 444333

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.86  E-value=0.3  Score=38.24  Aligned_cols=87  Identities=14%  Similarity=0.074  Sum_probs=53.5

Q ss_pred             CCeEEEE--cCChhHHHHHHHHHHCCCcEEEEcCCccchhh----HHhCCCccCCCH------------HHHh----hcC
Q 018303           70 PGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP----LISLGAKYQPSP------------DEVA----ASC  127 (358)
Q Consensus        70 ~~~IgII--G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~----~~~~g~~~~~~~------------~~~~----~~a  127 (358)
                      +.++.|+  |.|.+|....+.++..|.+|++..++++..+.    +.+.|...+-+.            .+..    ...
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~v  108 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA  108 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCE
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCCc
Confidence            3578888  67999999999999999999987766554432    334454322111            1111    236


Q ss_pred             CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEcc
Q 018303          128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s  164 (358)
                      |+++-++. .+.....+       ..++++..++..+
T Consensus       109 dvv~D~vg-~~~~~~~~-------~~l~~~G~~v~~G  137 (189)
T d1gu7a2         109 KLALNCVG-GKSSTGIA-------RKLNNNGLMLTYG  137 (189)
T ss_dssp             EEEEESSC-HHHHHHHH-------HTSCTTCEEEECC
T ss_pred             eEEEECCC-cchhhhhh-------hhhcCCcEEEEEC
Confidence            77777773 44444333       4567777777664

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.65  E-value=0.14  Score=42.25  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS  111 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~  111 (358)
                      .++|-|-|. +.||.++|+.|++.|+  .|++.+|+.++.+.+.+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            367777765 8899999999999985  68888998877666543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.066  Score=41.96  Aligned_cols=44  Identities=32%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             CeEEEE-cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCC
Q 018303           71 GRIGFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA  114 (358)
Q Consensus        71 ~~IgII-G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~  114 (358)
                      .+|.|. |.|.+|....+.++..|.+|++..+++++.+.+.+.|.
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa   77 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA   77 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc
Confidence            367777 45999999999999999999999999888777766554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.62  E-value=0.27  Score=37.63  Aligned_cols=97  Identities=11%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccc-----hhhHHh------CCCccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLIS------LGAKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~~~------~g~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +++.+|+++|-| ++..+++..+..+|+++.++.+..-.     .+...+      ..+....+++++++++|+|..-.-
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~   81 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW   81 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence            467899999974 46788888889999999999874211     111111      124567799999999999886541


Q ss_pred             Chh------hH-hhhh--cc-cccccccCCCCCEEEEcc
Q 018303          136 DPE------SA-MDVA--CG-KHGAASGMGPGKGYVDVS  164 (358)
Q Consensus       136 ~~~------~~-~~~~--~~-~~~~~~~l~~~~~vi~~s  164 (358)
                      -..      .. ...+  |. +.+.++..+++.+|.++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            110      00 0000  11 345556666777777663

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.55  E-value=0.25  Score=37.65  Aligned_cols=67  Identities=19%  Similarity=0.116  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcC---ChhHHHHHHHHHHCCC-cEEEEcCCccch-----hhHHhCC--CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGM---GIMGTPMAQNLLKAGC-DVTVWNRTKSKC-----DPLISLG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~---G~iG~~~a~~l~~~g~-~V~~~~~~~~~~-----~~~~~~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +.+.+|++||=   |++..++...+..+|. .+.++.+.....     +.+...|  +..+.+++++++++|+|....
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~   79 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR   79 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence            34679999996   6699999999999974 456665532211     1222333  345779999999999987653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.50  E-value=0.13  Score=42.41  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHH---HCCCcEEEEcCCccchhhH
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLL---KAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~---~~g~~V~~~~~~~~~~~~~  109 (358)
                      +|+|-|-|. +.||.++|+.|.   +.|++|++.+|++++.+.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            467888877 789999999996   4689999999998876544

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=91.46  E-value=0.12  Score=40.29  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=23.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CcEEEEc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWN  100 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~  100 (358)
                      +||||=|+|+||+.+.|.+.+.+    .+|...+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            58999999999999999987533    4555544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.42  E-value=0.17  Score=38.26  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CCCCeEEEE--cCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           68 ELPGRIGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        68 ~~~~~IgII--G~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ..++++-|+  |.|.||..+|..|++.|++|+++.+.+.-
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            344566666  99999999999999999999999987643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.36  E-value=0.1  Score=42.68  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=31.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      -|.|||.|..|...|..|++.|++|+++++++...
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g   38 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG   38 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            38899999999999999999999999999876543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.35  E-value=0.18  Score=41.70  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             eEEEE-cC-ChhHHHHHHHHHH---CCCcEEEEcCCccchhhHH
Q 018303           72 RIGFL-GM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        72 ~IgII-G~-G~iG~~~a~~l~~---~g~~V~~~~~~~~~~~~~~  110 (358)
                      ||.|| |. +.||.++|+.|++   .|++|.+++|+.++.+.+.
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLK   50 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHH
Confidence            57777 55 6899999999986   6899999999987766554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.33  E-value=0.086  Score=40.88  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=27.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      .+|.|||.|.+|..+|..|+..|.+|.+..+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            58999999999999999999999887665433

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.29  E-value=0.083  Score=43.81  Aligned_cols=38  Identities=21%  Similarity=0.132  Sum_probs=31.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHH
Q 018303           73 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI  110 (358)
Q Consensus        73 IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~  110 (358)
                      .-|-|. +.||+++|+.|++.|++|.+.+|+.+..+.+.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~   41 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE   41 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            445565 55999999999999999999999887766554

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.14  E-value=0.12  Score=39.56  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cccchhhhcc--ccccccCCC-----CCCCchhhHHHH
Q 018303          241 LVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG----AISAPMYSLK--GPSMIESLY-----PTAFPLKHQQKD  309 (358)
Q Consensus       241 ~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd  309 (358)
                      +-.|.....+..++.|+..+++..|.+.++++....-+    +..++..+++  +..+.++..     .....+..+...
T Consensus        28 ~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~~vEG~~t  107 (160)
T d1n1ea1          28 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVAT  107 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCSCCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccchHHHHHH
Confidence            34688888889999999999999999887776543322    2233333332  222222211     011123445666


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHH
Q 018303          310 LRLALGLAESVSQSTPIAAAANELYK  335 (358)
Q Consensus       310 ~~~~~~~a~~~gi~~p~~~a~~~~~~  335 (358)
                      ...+.++++++++.+|+.+++++++.
T Consensus       108 ~~~v~~l~~~~~i~~Pi~~~vy~Il~  133 (160)
T d1n1ea1         108 ADPLMRLAKQLKVKMPLCHQIYEIVY  133 (160)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHh
Confidence            78889999999999999999999873

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.097  Score=44.77  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=29.5

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      |.|||+|.-|...|..|++.|++|++++++..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78999999999999999999999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.85  E-value=0.14  Score=36.90  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSK  105 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~  105 (358)
                      .++|.|||.|.+|..+|..+...|   .+|+++.+.+.-
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            368999999999999998877654   579999876543

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.80  E-value=0.14  Score=41.89  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      +|+|-|.|. |.||.++|+.|++.|++|.+.|++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            578989977 77999999999999999999988654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.58  E-value=0.08  Score=44.82  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           67 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        67 ~~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ++++|++-|-|++   .||.++|+.|++.|++|.+.+|++.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            6788899999986   5999999999999999999988653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.51  E-value=0.31  Score=37.48  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccch-----hh----HHhCC--CccCCCHHHHhhcCCEEEEeeC
Q 018303           68 ELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKC-----DP----LISLG--AKYQPSPDEVAASCDVTFAMLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~----~~~~g--~~~~~~~~~~~~~aDivi~~vp  135 (358)
                      +.+++|+++|-|+ +-.+++..+..+|+++.++.+..-..     +.    ..+.|  +....++++.++.+|+|..-..
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            4578999999863 44455555566899999888643221     11    11112  4567899999999999998764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=90.47  E-value=0.16  Score=39.28  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=25.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWN  100 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~  100 (358)
                      ||||=|+|+||+.+.+.+...+.+|...+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaIN   30 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVN   30 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEC
Confidence            79999999999999999988888877654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.21  Score=39.11  Aligned_cols=67  Identities=12%  Similarity=0.069  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCC--hhHHHHHHHHHHCCCcEEEEcCCccch-----hh----HHhCC--CccCCCHHHHhhcCCEEEEee
Q 018303           68 ELPGRIGFLGMG--IMGTPMAQNLLKAGCDVTVWNRTKSKC-----DP----LISLG--AKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        68 ~~~~~IgIIG~G--~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~----~~~~g--~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +.+.+|+++|=|  ++..+++..++.+|+++.++.+..-..     +.    ....|  +..+.+++++++++|+|..-+
T Consensus         3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~   82 (183)
T d1duvg2           3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV   82 (183)
T ss_dssp             GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence            455799999955  799999999999999999998742111     11    11223  345789999999999998766

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.23  E-value=0.12  Score=39.36  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      ||.|||.|.+|..+|..|+. +.+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            79999999999999999965 67999998754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.17  E-value=0.19  Score=39.44  Aligned_cols=87  Identities=22%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcE-EEEcCCccchhhHH-hCCCcc-----CCCHHHHhhc-----CCEEEEeeCCh
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDV-TVWNRTKSKCDPLI-SLGAKY-----QPSPDEVAAS-----CDVTFAMLADP  137 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V-~~~~~~~~~~~~~~-~~g~~~-----~~~~~~~~~~-----aDivi~~vp~~  137 (358)
                      .+|.|.| +|.+|+...+.++..|.++ ++.+.++++...+. +.|...     ..+..+.+++     .|+|+-++. .
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-g  110 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-G  110 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-H
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-c
Confidence            5788888 5999999999999999864 44566555544443 344321     2344444444     888888884 4


Q ss_pred             hhHhhhhcccccccccCCCCCEEEEccC
Q 018303          138 ESAMDVACGKHGAASGMGPGKGYVDVST  165 (358)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~  165 (358)
                      +..+..       +..++++..++.++.
T Consensus       111 ~~~~~~-------~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         111 DISNTV-------ISQMNENSHIILCGQ  131 (187)
T ss_dssp             HHHHHH-------HTTEEEEEEEEEC--
T ss_pred             hhHHHH-------hhhccccccEEEecc
Confidence            433333       356777777777653

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.05  E-value=0.49  Score=38.80  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             EEEE--cCChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           73 IGFL--GMGIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        73 IgII--G~G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ++||  |.+.||.++|+.|++.|++|.+.+|+.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            5566  44679999999999999999999988654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.91  E-value=0.13  Score=45.19  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcC
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      +|||.|.|. |.||+.+++.|.+.|++|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            579999965 99999999999999999999973

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.80  E-value=0.12  Score=40.18  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=23.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---CcEEEEc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWN  100 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~  100 (358)
                      |||||=|+|+||+.+.|.+....   .+|...+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            48999999999999999987643   4555443

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.77  E-value=0.14  Score=41.73  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303           72 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK  105 (358)
Q Consensus        72 ~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~  105 (358)
                      ||-|.|. |.||.++|+.|++.|++|++.||+++.
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            6877755 999999999999999999999997653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.74  E-value=0.15  Score=41.41  Aligned_cols=36  Identities=19%  Similarity=0.114  Sum_probs=29.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC  106 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~  106 (358)
                      |++-|-|. +.||+++|+.|++.|++|.+.+|+.+..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            34555554 8999999999999999999999987653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.72  E-value=0.21  Score=40.94  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL  109 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~  109 (358)
                      .|.|||.|.-|...|..+++.|++|+++++++.....+
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            48999999999999999999999999999987654443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.56  E-value=0.19  Score=42.65  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      |+|-|.|. |.||+.+++.|.+.|++|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47888865 99999999999999999999998653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.50  E-value=0.15  Score=43.73  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHH-----HCCCcEEEEcCCccc
Q 018303           72 RIGFLGMGIMGTPMAQNLL-----KAGCDVTVWNRTKSK  105 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~-----~~g~~V~~~~~~~~~  105 (358)
                      -|.|||.|..|..+|..|+     ..|++|+++++++..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4999999999999999996     479999999987653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=89.14  E-value=0.21  Score=42.41  Aligned_cols=30  Identities=27%  Similarity=0.556  Sum_probs=26.7

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCcEEEEcC
Q 018303           72 RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      ||.|.| .|-||+.+++.|.+.|++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            687875 599999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.18  Score=40.18  Aligned_cols=30  Identities=13%  Similarity=0.052  Sum_probs=28.5

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      |.|||.|..|...|..+++.|.+|.+++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999875

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.74  E-value=0.0041  Score=46.66  Aligned_cols=30  Identities=7%  Similarity=-0.195  Sum_probs=28.1

Q ss_pred             CCCCCCCccccccCCCCCccccccCCCCCC
Q 018303           15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLP   44 (358)
Q Consensus        15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~   44 (358)
                      ++||++++|+|+++|++....+.+|+|.|.
T Consensus       100 ~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2         100 AEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            999999999999999999999999999884

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.28  Score=36.26  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHH----HCCCcEEEEcCCcc
Q 018303           70 PGRIGFLGMGIMGTPMAQNLL----KAGCDVTVWNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~G~iG~~~a~~l~----~~g~~V~~~~~~~~  104 (358)
                      .++|.|||.|.+|..+|..|.    ..|.+|++..+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            468999999999999998885    46899999887654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.11  E-value=0.25  Score=42.35  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      ..|+|.|.| .|-||+.+++.|.+.|++|++.|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            456888885 5999999999999999999999863

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=88.05  E-value=0.54  Score=35.82  Aligned_cols=54  Identities=11%  Similarity=0.096  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML  134 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v  134 (358)
                      +..+++..+..+|+++.++.+..-..+.....++....++.++++++|+|..-+
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            788999999999999999988543322222345777889999999999997643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.26  Score=42.23  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             CeE-EEE-cCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           71 GRI-GFL-GMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        71 ~~I-gII-G~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      ||| .|. |.|-||+.+++.|.+.|++|.+.||.+.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            478 466 5599999999999999999999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.57  E-value=0.28  Score=39.23  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      -|.|||.|.-|...|..+++.|.+|.+++..+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            489999999999999999999999999997544

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.33  E-value=0.32  Score=41.39  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=28.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      |++.|.| .|-+|+.+++.|.+.|++|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4566665 59999999999999999999999854

>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Putative arsenical resistance protein
species: Shigella flexneri [TaxId: 623]

Probab=87.27  E-value=3.1  Score=33.38  Aligned_cols=75  Identities=11%  Similarity=0.044  Sum_probs=43.2

Q ss_pred             CCeEEEE-cC---ChhHHH----HHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCC----
Q 018303           70 PGRIGFL-GM---GIMGTP----MAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLAD----  136 (358)
Q Consensus        70 ~~~IgII-G~---G~iG~~----~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~----  136 (358)
                      ..||.+| |-   +.....    +++.+.+.|++|.++|-..-........ ....+..+.+.+.+||.||+++|.    
T Consensus        34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL~dlpl~~~~~~~~~~~v~~l~~~l~~AD~vIi~tP~Y~~~  113 (233)
T d2fzva1          34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ  113 (233)
T ss_dssp             CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHHHHhhhcCeEEEEEccCCCCCCCcccccCCHHHHHHHHHHhhcCeeEEEccccccC
Confidence            4566666 54   333444    4445667899999998653222111110 111122445667889999999995    


Q ss_pred             -hhhHhhhh
Q 018303          137 -PESAMDVA  144 (358)
Q Consensus       137 -~~~~~~~~  144 (358)
                       +..+++.+
T Consensus       114 ~~~~lKn~i  122 (233)
T d2fzva1         114 ITSVMKAQI  122 (233)
T ss_dssp             ECHHHHHHH
T ss_pred             cHHHHHhhH
Confidence             34566666

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.25  E-value=0.098  Score=43.73  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=25.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      |||.|.|. |-+|+.+++.|.+.|+.|.+..+
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~   32 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVH   32 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECC
Confidence            68999975 99999999999998875554333

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.23  E-value=0.25  Score=39.25  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      -|.|||.|..|...|..+++.|.+|.++++.+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38899999999999999999999999998754

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=87.17  E-value=3.3  Score=30.24  Aligned_cols=127  Identities=10%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             eEEEE---cCC---hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh-----hhH
Q 018303           72 RIGFL---GMG---IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ESA  140 (358)
Q Consensus        72 ~IgII---G~G---~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~-----~~~  140 (358)
                      |+.||   ..|   .|...+++.+.+.|.+|.+++.+....+           ++.+.+.++|.|++.+|..     +.+
T Consensus         4 K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~-----------~~~~~~~~~d~ii~Gspt~~g~~~~~~   72 (149)
T d1ycga1           4 KAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRN-----------DVIKEILDARAVLVGSPTINNDILPVV   72 (149)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHH-----------HHHHHHHHCSEEEEECCCBTTBCCGGG
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchH-----------HHhhhhhhCCeEEEEeecccCCCCHHH
Confidence            55555   334   4777888888889999998876433221           1223345799999999842     345


Q ss_pred             hhhhcccccccccCCCCCEEEEc-cC-CChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHH
Q 018303          141 MDVACGKHGAASGMGPGKGYVDV-ST-VDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAP  218 (358)
Q Consensus       141 ~~~~~~~~~~~~~l~~~~~vi~~-s~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~  218 (358)
                      +..+   ..+...-.++..+.-. +. ......+.+.+.+...|...+..|..           ..-..-+++..+.+.+
T Consensus        73 ~~~l---~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~-----------~~~~~P~~~dl~~~~e  138 (149)
T d1ycga1          73 SPLL---DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGP-----------TVQWVPRGEDLQRCYE  138 (149)
T ss_dssp             HHHH---HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCC-----------EEESSCCHHHHHHHHH
T ss_pred             HHHH---HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceE-----------EEcccCCHHHHHHHHH
Confidence            5555   3332222234332222 21 22334567888888888777653311           0101114556666666


Q ss_pred             HHHHh
Q 018303          219 LLDIM  223 (358)
Q Consensus       219 ll~~~  223 (358)
                      +-+.+
T Consensus       139 ~g~~i  143 (149)
T d1ycga1         139 LGRKI  143 (149)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.10  E-value=0.26  Score=38.53  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      ++|.|||.|..|..-|..+++.|.+|.++++..
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            589999999999999999999999999998654

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.05  E-value=0.41  Score=36.23  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303           81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD  136 (358)
Q Consensus        81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~  136 (358)
                      -+..++..+.+.|++|..+..-++..+.+.+       .+.++++++|+||++--.
T Consensus        28 N~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~DliittGG~   76 (155)
T d2ftsa3          28 NRSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITSGGV   76 (155)
T ss_dssp             HHHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEESCC
T ss_pred             hHHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEeccc
Confidence            3677888999999998877665555555543       466778889999987643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.72  E-value=0.21  Score=39.03  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      .+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            479999999999999999999999999998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.33  Score=41.66  Aligned_cols=31  Identities=26%  Similarity=0.383  Sum_probs=27.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      +||.|.| .|-||+.+++.|.+.|++|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            5898885 599999999999999999999875

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.45  E-value=0.31  Score=40.54  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLK-AGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~-~g~~V~~~~~~~~  104 (358)
                      -|.|||+|.-|...|..|++ .|++|.++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            59999999999999999987 5999999998764

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.39  E-value=4.7  Score=33.60  Aligned_cols=122  Identities=8%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-ccchhhhccccccccCCCC----CC
Q 018303          232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK------VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYP----TA  300 (358)
Q Consensus       232 ~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~----~~  300 (358)
                      ........+.+.+.+..+.+..+++.+.+.++      .+++..++.++++.+. ..|.+++.....+......    ..
T Consensus       141 ~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~~  220 (300)
T d1pgja1         141 KSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA  220 (300)
T ss_dssp             CSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTGG
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhHH
Confidence            35567788999999999999999999999865      4689999999999874 4566666433222221110    11


Q ss_pred             Cc--hhhHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303          301 FP--LKHQQKDL-RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA  356 (358)
Q Consensus       301 ~~--~~~~~kd~-~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~  356 (358)
                      +.  +.....+. +.+...+.+.|+|+|.+.+...-+.....   .+.....++++.|+
T Consensus       221 f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~---~~l~~anLIQAqRD  276 (300)
T d1pgja1         221 FQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFT---PTLKYGQLVSLQRD  276 (300)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTC---SCCTHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCCchhHHHHHHHh
Confidence            11  11111122 44555677889999999988775554432   22334468887764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.17  E-value=0.37  Score=41.72  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      ++.|.| +|-+|+.+++.|.+.|++|++.+|..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            455776 79999999999999999999999854

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.96  Score=37.88  Aligned_cols=100  Identities=12%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHC----CC-------cEEEEcCCc----cc---hhh----HHhCC-CccCCCHHHH
Q 018303           67 DELPGRIGFLGMGIMGTPMAQNLLKA----GC-------DVTVWNRTK----SK---CDP----LISLG-AKYQPSPDEV  123 (358)
Q Consensus        67 ~~~~~~IgIIG~G~iG~~~a~~l~~~----g~-------~V~~~~~~~----~~---~~~----~~~~g-~~~~~~~~~~  123 (358)
                      .+...||.|.|+|.-|..+++.+...    |.       +++++|+..    ++   .+.    +.+.. -....++.|+
T Consensus        22 ~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~  101 (294)
T d1pj3a1          22 PISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDA  101 (294)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHH
T ss_pred             CHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHH
Confidence            45556899999999999999997653    32       588888742    11   111    11111 1123478888


Q ss_pred             hh--cCCEEEEee-CChhhHhhhhcccccccccCCCCCEEEEccCCChhH
Q 018303          124 AA--SCDVTFAML-ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT  170 (358)
Q Consensus       124 ~~--~aDivi~~v-p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~  170 (358)
                      ++  ++|+++-+. +....+++++   +.+ ..+.+.-+|.-+|+-.+..
T Consensus       102 i~~~kptvliG~S~~~g~ft~evi---~~M-a~~~~~PIIFaLSNPt~~~  147 (294)
T d1pj3a1         102 VNILKPSTIIGVAGAGRLFTPDVI---RAM-ASINERPVIFALSNPTAQA  147 (294)
T ss_dssp             HHHHCCSEEEECCCSSCCSCHHHH---HHH-HHHCSSCEEEECCSSGGGC
T ss_pred             HHhcCCceEEEecCCCCcCCHHHH---HHH-HhcCCCcEEEEccCCCCcC
Confidence            76  677776665 3344566776   443 3467888999888876653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.99  E-value=0.33  Score=38.69  Aligned_cols=31  Identities=16%  Similarity=0.080  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      .|-|||.|..|...|..+++.|.+|.++++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999999875

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.28  Score=37.62  Aligned_cols=31  Identities=19%  Similarity=0.340  Sum_probs=25.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEEEcC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNR  101 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~~  101 (358)
                      +||||=|+|+||+.+.|.+... ..+|...+-
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd   33 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   33 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeC
Confidence            5899999999999999998875 466666553

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.94  E-value=0.2  Score=43.18  Aligned_cols=31  Identities=23%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEc
Q 018303           70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN  100 (358)
Q Consensus        70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~  100 (358)
                      +|+|.|.| .|-+|+.+++.|.+.|++|.+++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            57999997 69999999999999998765543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.51  E-value=0.42  Score=38.31  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      -|.|||.|.-|...|..+++.|.+|.++++.+.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            489999999999999999999999999987653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.45  E-value=0.29  Score=41.30  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      +||.|.|. |.+|+.+++.|.+.|+.|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            58999965 999999999999999998887654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.67  Score=33.27  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             CeEEEEcCCh-----------hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEE-eeCChh
Q 018303           71 GRIGFLGMGI-----------MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA-MLADPE  138 (358)
Q Consensus        71 ~~IgIIG~G~-----------iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~-~vp~~~  138 (358)
                      ++|.|||.|.           .+...++.|++.|+++++.+.||+.+.          +|.    .-+|-+.+ .+ ...
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs----------td~----d~aD~lYfepl-t~e   69 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS----------TDY----DTSDRLYFEPV-TLE   69 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST----------TST----TSSSEEECCCC-SHH
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh----------cCh----hhcCceEEccC-CHH
Confidence            5899999985           477888999999999999999987532          222    23565544 33 345


Q ss_pred             hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303          139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .+.+++       ..-+|..+++..+   ......+...|.+.|+..++
T Consensus        70 ~v~~Ii-------~~E~p~~ii~~~G---GQtalnla~~L~~~gv~iLG  108 (121)
T d1a9xa4          70 DVLEIV-------RIEKPKGVIVQYG---GQTPLKLARALEAAGVPVIG  108 (121)
T ss_dssp             HHHHHH-------HHHCCSEEECSSS---THHHHTTHHHHHHTTCCBCS
T ss_pred             HHHHHH-------HHhCCCEEEeehh---hhhHHHHHHHHHHcCCcEEC
Confidence            555555       2335666666443   23334455666666655443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.46  Score=36.40  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      -|.|||.|..|..-|..+++.|.+|.+.++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3889999999999999999999999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.00  E-value=0.18  Score=39.04  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEE
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTV   98 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~   98 (358)
                      +|.|||.|.+|..+|..|+..|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEE
Confidence            699999999999999999998876443

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.81  E-value=0.42  Score=38.38  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      -|.|||.|.-|...|..+++.|++|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38899999999999999999999999998654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.60  E-value=0.48  Score=39.77  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      -|.|||.|..|...|..+++.|.+|+++++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            499999999999999999999999999998653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.55  E-value=0.45  Score=36.59  Aligned_cols=29  Identities=21%  Similarity=0.392  Sum_probs=23.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHC---CCcEEEEc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKA---GCDVTVWN  100 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~---g~~V~~~~  100 (358)
                      ||||=|+|+||+.+.|.+...   +.+|...+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            799999999999999998753   35666554

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.5  Score=37.44  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      +.|||.|..|...|..+++.|.+|.+.++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.24  E-value=1.8  Score=36.59  Aligned_cols=67  Identities=19%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             CCCCCeEEEEcC---ChhHHHHHHHHHHCC-CcEEEEcCCccch-----hhHHhCC--CccCCCHHHHhhcCCEEEEe
Q 018303           67 DELPGRIGFLGM---GIMGTPMAQNLLKAG-CDVTVWNRTKSKC-----DPLISLG--AKYQPSPDEVAASCDVTFAM  133 (358)
Q Consensus        67 ~~~~~~IgIIG~---G~iG~~~a~~l~~~g-~~V~~~~~~~~~~-----~~~~~~g--~~~~~~~~~~~~~aDivi~~  133 (358)
                      .+.+.+|+++|-   +++..+++..+..+| +++.++.+..-..     +.+.+.+  +....+++++++++|+|...
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~  228 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT  228 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence            577889999997   778888888888885 7888887643211     1222223  34567899999999998754

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=84.05  E-value=0.42  Score=39.27  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCc-EEEEcCCccc
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCD-VTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~-V~~~~~~~~~  105 (358)
                      .+|-|.| .|.||..+|+.|++.|.+ |.++.|+...
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~   46 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD   46 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccC
Confidence            3788887 599999999999999984 7778887544

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=0.8  Score=33.23  Aligned_cols=72  Identities=19%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCChh-----------HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEE-eeC
Q 018303           68 ELPGRIGFLGMGIM-----------GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA-MLA  135 (358)
Q Consensus        68 ~~~~~IgIIG~G~i-----------G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~-~vp  135 (358)
                      ...++|.|||.|.+           +...++.|++.|++++..+.||+.+.          +|.    +-+|-+.+ .+ 
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVs----------td~----d~aD~lYfePl-   69 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIM----------TDP----EMADATYIEPI-   69 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGG----------GCG----GGSSEEECSCC-
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhh----------cCh----hhcceeeeecC-
Confidence            34479999999864           77888899999999999999987542          222    24566554 33 


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEE
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                      ....+.+++       ..-+|..++.
T Consensus        70 t~e~v~~Ii-------~~E~pd~il~   88 (127)
T d1a9xa3          70 HWEVVRKII-------EKERPDAVLP   88 (127)
T ss_dssp             CHHHHHHHH-------HHHCCSEEEC
T ss_pred             CHHHHHHHH-------HHhCcCCeEE
Confidence            455666666       2235666665

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=2.1  Score=31.90  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC--CCcEEE--EcCCcc
Q 018303           71 GRIGFLGM-GIMGTPMAQNLLKA--GCDVTV--WNRTKS  104 (358)
Q Consensus        71 ~~IgIIG~-G~iG~~~a~~l~~~--g~~V~~--~~~~~~  104 (358)
                      ++|.|+|. |.||+.....++.+  .++|.+  ++++.+
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~   40 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVT   40 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHH
Confidence            57999987 99999999999876  366665  344443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.26  Score=41.49  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=23.7

Q ss_pred             CeEEEE-c-CChhHHHHHHHHHHCCCcEEEE
Q 018303           71 GRIGFL-G-MGIMGTPMAQNLLKAGCDVTVW   99 (358)
Q Consensus        71 ~~IgII-G-~G~iG~~~a~~l~~~g~~V~~~   99 (358)
                      +||.+| | .+.||.++|+.|++.|.+|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            478877 5 5899999999999999875544

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=82.92  E-value=0.9  Score=34.79  Aligned_cols=30  Identities=20%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCcEEEEc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTVWN  100 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~  100 (358)
                      .||||=|+|+||+.+.|.+... ..+|...+
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            4899999999999999988754 47776654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.80  E-value=0.32  Score=39.65  Aligned_cols=89  Identities=10%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh----CC--Ccc-CCCHHHH--hhcCCEEEEe-----
Q 018303           68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LG--AKY-QPSPDEV--AASCDVTFAM-----  133 (358)
Q Consensus        68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----~g--~~~-~~~~~~~--~~~aDivi~~-----  133 (358)
                      ...++|.=||||. | .++..|++.|.+|+++|.+++-++.+++    .+  +.+ ..|..++  -+..|+|++.     
T Consensus        36 ~~~~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            4456899998883 3 3566777789999999999876554332    22  221 2334333  2346888763     


Q ss_pred             -eCChhhHhhhhcccccccccCCCCCEEE
Q 018303          134 -LADPESAMDVACGKHGAASGMGPGKGYV  161 (358)
Q Consensus       134 -vp~~~~~~~~~~~~~~~~~~l~~~~~vi  161 (358)
                       ++...+...++   +.+...|+||..+|
T Consensus       114 ~~~~~~~~~~~l---~~~~~~LkpgG~~i  139 (246)
T d1y8ca_         114 YIIDSDDLKKYF---KAVSNHLKEGGVFI  139 (246)
T ss_dssp             GCCSHHHHHHHH---HHHHTTEEEEEEEE
T ss_pred             ccCCHHHHHHHH---HHHHHhCCCCeEEE
Confidence             34455666777   77888899887555

>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.36  E-value=6.6  Score=27.98  Aligned_cols=113  Identities=14%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChh-------hHhhhhcccccccc
Q 018303           80 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE-------SAMDVACGKHGAAS  152 (358)
Q Consensus        80 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~-------~~~~~~~~~~~~~~  152 (358)
                      .+...+++.+.+.|++|.+++.+.              .+..+ +.++|.+++.+|...       .....+   ..+..
T Consensus        14 ~vA~~ia~~l~~~g~~v~~~~~~~--------------~~~~~-l~~~~~~i~g~pt~~~g~~p~~~~~~~~---~~~~~   75 (138)
T d5nula_          14 KMAELIAKGIIESGKDVNTINVSD--------------VNIDE-LLNEDILILGCSAMTDEVLEESEFEPFI---EEIST   75 (138)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEGGG--------------CCHHH-HTTCSEEEEEECCBTTTBCCTTTHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHhcCCcceeccccc--------------ccccc-cccCCeEEEEEeccCCCCCChHHHHHHH---HHhCc
Confidence            466788888888899988877532              13344 457999999998531       122223   22222


Q ss_pred             cCCCCC---EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhc
Q 018303          153 GMGPGK---GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG  224 (358)
Q Consensus       153 ~l~~~~---~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g  224 (358)
                      .+ +++   ++...+.+.....+.+.+.+...|...+..+.             .+-..+++..++++++.+.++
T Consensus        76 ~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~-------------~~~~~p~e~~~~~~~~g~~lA  136 (138)
T d5nula_          76 KI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPL-------------IVQNEPDEAEQDCIEFGKKIA  136 (138)
T ss_dssp             GC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCE-------------EEESSCGGGHHHHHHHHHHHH
T ss_pred             cC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcE-------------EECCCCcHHHHHHHHHHHHHh
Confidence            22 333   33333333345556788888888876654321             222234455666666665553

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.30  E-value=0.69  Score=36.47  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK  103 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~  103 (358)
                      -|-|||.|..|...|..+++.|.+|.++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            38899999999999999999999999998753

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.26  E-value=0.8  Score=35.83  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAG   93 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g   93 (358)
                      +||||=|+|+||+.+.|.+...+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~   25 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDG   25 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCChHHHHHHHHHHHcC
Confidence            58999999999999999887643

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=81.98  E-value=0.53  Score=38.68  Aligned_cols=107  Identities=20%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCh--hHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----C----Cc-cCCCHHHHhh--cCCEEEEeeC
Q 018303           69 LPGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G----AK-YQPSPDEVAA--SCDVTFAMLA  135 (358)
Q Consensus        69 ~~~~IgIIG~G~--iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~--~aDivi~~vp  135 (358)
                      .+++|.=+|+|.  +...+|+.+.. +-+|+.+|++++..+.+.+.    +    +. ...|..+.+.  ..|.|++.+|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            457999998765  44455555533 34799999998776654431    1    11 1123333332  3799999998


Q ss_pred             ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC
Q 018303          136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA  183 (358)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~  183 (358)
                      .+.   .++   +.+...|+||.+++...- .......+.+.+++.+.
T Consensus       164 ~p~---~~l---~~~~~~LKpGG~lv~~~P-~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         164 DPW---NHV---QKIASMMKPGSVATFYLP-NFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             CGG---GSH---HHHHHTEEEEEEEEEEES-SHHHHHHHHHHSGGGTE
T ss_pred             chH---HHH---HHHHHhcCCCceEEEEeC-CcChHHHHHHHHHHCCC
Confidence            664   344   555677899988774322 23445566677776653

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.89  E-value=3.2  Score=31.82  Aligned_cols=63  Identities=6%  Similarity=0.062  Sum_probs=35.7

Q ss_pred             HHHhhcCCEEEEeeCCh-----hhHhhhhcccccccccCCCCCE--EEEcc-CCChhHHHHHHHHHHhcCCeEec
Q 018303          121 DEVAASCDVTFAMLADP-----ESAMDVACGKHGAASGMGPGKG--YVDVS-TVDGDTSKLINGHIKATGASFLE  187 (358)
Q Consensus       121 ~~~~~~aDivi~~vp~~-----~~~~~~~~~~~~~~~~l~~~~~--vi~~s-~~~~~~~~~l~~~l~~~~~~~~~  187 (358)
                      .+.+..||.||+++|..     ..++..+   +.+...+ .|+.  ++..+ ++.......|...+...|..++.
T Consensus        79 ~~~i~~AD~iIi~tP~Y~~~~~~~lK~~i---D~~~~~~-~gKpv~ivs~g~~gg~~a~~~L~~~l~~~g~~vv~  149 (185)
T d1t0ia_          79 SRIVNALDIIVFVTPQYNWGYPAALKNAI---DRLYHEW-HGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIG  149 (185)
T ss_dssp             HHHHHTCSEEEEEEECBTTBCCHHHHHHH---HTCSTTT-TTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHhCCCeEEEEeeecCCCcHHHHHHH---HHhhHHH-CCCEEEEEEEcCcchHHHHHHHHHHHHHCCCEEcC
Confidence            35578899999999963     4566666   3332222 2333  33332 23333445566666666766664

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.73  E-value=0.45  Score=41.76  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHH------CCCcEEEEcCCccc
Q 018303           72 RIGFLGMGIMGTPMAQNLLK------AGCDVTVWNRTKSK  105 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~------~g~~V~~~~~~~~~  105 (358)
                      -|.|||.|.-|...|..|++      .|++|++.++....
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            59999999999999999986      79999999987543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.58  E-value=1.6  Score=32.61  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHC--CCcEEE--EcCCcc
Q 018303           70 PGRIGFLGM-GIMGTPMAQNLLKA--GCDVTV--WNRTKS  104 (358)
Q Consensus        70 ~~~IgIIG~-G~iG~~~a~~l~~~--g~~V~~--~~~~~~  104 (358)
                      +++|+|+|. |.||+.....+.+.  .++|.+  +.++.+
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~   41 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVK   41 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHH
Confidence            368999997 99999999999875  366665  344433

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=81.44  E-value=0.53  Score=37.04  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---cEEEEcCCccc
Q 018303           71 GRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKSK  105 (358)
Q Consensus        71 ~~IgIIG~G~iG~~~a~~l~~~g~---~V~~~~~~~~~  105 (358)
                      +||-|||.|.-|..++.++...|.   +.+..|.+.+.
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~   38 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQV   38 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHH
Confidence            479999999999999999988664   44556665443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.14  E-value=0.73  Score=38.94  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS  104 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~  104 (358)
                      -|.|||.|.-|...|..+++.|.+|+++++.+.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            399999999999999999999999999998653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.05  E-value=0.55  Score=36.75  Aligned_cols=90  Identities=21%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh----CCCc----cCCCHHHH-h-hcCCEEEEeeCC--
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----LGAK----YQPSPDEV-A-ASCDVTFAMLAD--  136 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----~g~~----~~~~~~~~-~-~~aDivi~~vp~--  136 (358)
                      .+.+|.=||+| .|. .+..|++.|++|+++|.++..++.+..    .++.    ...+..+. . ...|+|+.....  
T Consensus        30 ~~grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          30 APGRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF  107 (198)
T ss_dssp             CSCEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred             CCCcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence            44589999999 555 556777889999999999876654332    2221    11222221 1 234777653321  


Q ss_pred             --hhhHhhhhcccccccccCCCCCEEEEc
Q 018303          137 --PESAMDVACGKHGAASGMGPGKGYVDV  163 (358)
Q Consensus       137 --~~~~~~~~~~~~~~~~~l~~~~~vi~~  163 (358)
                        +.....++   +++...++||.+++-.
T Consensus       108 ~~~~~~~~~l---~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1         108 LEAQTIPGLI---ANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             SCTTHHHHHH---HHHHHTEEEEEEEEEE
T ss_pred             CCHHHHHHHH---HHHHHHcCCCcEEEEE
Confidence              23445566   6666677777655543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=80.66  E-value=0.74  Score=39.40  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCcEEEEcC
Q 018303           72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNR  101 (358)
Q Consensus        72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~  101 (358)
                      -+-|||.|.-|..+|.+|++.|++|++..+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            388999999999999999999999999975

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.66  E-value=0.7  Score=36.79  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=27.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHCCC---cEEEEcCCcc
Q 018303           69 LPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRTKS  104 (358)
Q Consensus        69 ~~~~IgIIG~G~iG~~~a~~l~~~g~---~V~~~~~~~~  104 (358)
                      ...+|.|||.|.-|..++.++...|.   +.+.+|.+.+
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~   52 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQ   52 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHH
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHH
Confidence            34689999999999999999988764   3455565543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.46  E-value=0.82  Score=39.04  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      |.|.|.| .|-||+.+++.|.+.|++|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            3577775 5999999999999999999998763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.36  E-value=0.85  Score=37.25  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCcEEEEcCC
Q 018303           73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRT  102 (358)
Q Consensus        73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~  102 (358)
                      +.|||.|.-|...|..+++.|.+|.+++++
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            789999999999999999999999999875