Citrus Sinensis ID: 018309

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MMLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Secondary Structure (PSIPRED)
cccHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccHHHHHHHHHccccEEEEEEcccccccccccEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEEHEHHHHHccccccccccccccHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHccHHHHHHHHHHHHHHHccccEEEccccccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHcccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
MMLLCVRKVLHNTQRLIYSFLVIVYLHscphiqytsSFLTQVTALDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQALqlgqdanpslgfngqrcqmclrsdpLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Flexible Loop (DISEMBL)
MMLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMErlanpgvrRLVIVEagskrvegiislsdVFRFLLGV
Low Complexity Region (SEG)
MMLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered region (IsUnstruct)
**LLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL**
Disordered Region (DISOPRED)
********VLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA***LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISEMBL)
MMLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISPRO)
*MLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLLCVRKVLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.882	0.648	0.789	1e-143
P58108	330	5'-AMP-activated protein	yes	no	0.801	0.869	0.314	4e-28
P54619	331	5'-AMP-activated protein	yes	no	0.801	0.867	0.314	4e-28
Q09138	330	5'-AMP-activated protein	yes	no	0.801	0.869	0.314	4e-28
P80385	330	5'-AMP-activated protein	yes	no	0.801	0.869	0.314	8e-28
O54950	330	5'-AMP-activated protein	yes	no	0.801	0.869	0.314	8e-28
Q91WG5	566	5'-AMP-activated protein	no	no	0.821	0.519	0.295	8e-26
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.821	0.516	0.295	3e-25
Q5R4S0	524	5'-AMP-activated protein	no	no	0.821	0.561	0.292	7e-25
Q8T277	577	5'-AMP-activated protein	yes	no	0.879	0.545	0.275	1e-24

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 171 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 230

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 231 EEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 288

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 289 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 348

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 349 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 408

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 409 HLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 468

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEGIISLSDVF+FLLG+
Sbjct: 469 KRVEGIISLSDVFQFLLGL 487

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)

Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 36  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 92

Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 93  NILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 138

Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 139 FDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 192

Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 193 LEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 243

Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 244 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINRLV 293

Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 294 EAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)

Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 36  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 92

Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 93  NILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 138

Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 139 FDAVSSLIRNKIHRLPVIDP--ESGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 192

Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 193 LEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 243

Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 244 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINRLV 293

Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 294 EAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)

Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 36  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 92

Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 93  NILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 138

Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 139 FDAVSSLIRNKIHRLPVIDP--ESGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 192

Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 193 LEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 243

Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 244 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINRLV 293

Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 294 EAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)

Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 35  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91

Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 92  NILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 137

Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 138 FDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 191

Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 192 LEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 242

Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 243 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINRLV 292

Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 293 EAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)

Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 35  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91

Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 92  NILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 137

Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 138 FDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 191

Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 192 LQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 242

Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 243 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINRLV 292

Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 293 EAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 162/338 (47%), Gaps = 44/338 (13%)

Query: 20  FLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGV 79
           ++  +  H C  I  TSS   ++   D  L VK+AF  L   G+   PLW+  K  FVG+
Sbjct: 258 YMRFMRSHKCYDIVPTSS---KLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGM 314

Query: 80  LSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQA 139
           L+  DFI IL         +   ELE H I  W+   LQ   K            PLV  
Sbjct: 315 LTITDFINILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNI 361

Query: 140 GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 199
            P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F       
Sbjct: 362 SPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKP 415

Query: 200 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 259
             ++Q +  + +GT+            A + P   +  AL + V+  +S++P+VD++  +
Sbjct: 416 AFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKV 466

Query: 260 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 319
           +DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  
Sbjct: 467 VDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSKLETLET 516

Query: 320 VMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
           +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 517 IVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 162/338 (47%), Gaps = 44/338 (13%)

Query: 20  FLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGV 79
           ++  +  H C  I  TSS   ++   D  L VK+AF  L   G+   PLW+  K  FVG+
Sbjct: 261 YMRFMRSHKCYDIVPTSS---KLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGM 317

Query: 80  LSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQA 139
           L+  DFI IL         +   ELE H I  W+   LQ   K            PLV  
Sbjct: 318 LTITDFINILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNI 364

Query: 140 GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 199
            P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F       
Sbjct: 365 SPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKP 418

Query: 200 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 259
             ++Q +  + +GT+            A + P   +  AL + V+  +S++P+VD++  +
Sbjct: 419 AFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKV 469

Query: 260 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 319
           +DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  
Sbjct: 470 VDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILET 519

Query: 320 VMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
           +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 520 IVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 161/338 (47%), Gaps = 44/338 (13%)

Query: 20  FLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGV 79
           ++  +  H C  I  TSS   ++   D  L VK+AF  L   G+   PLW+  K  FVG+
Sbjct: 216 YMRFMRSHKCYDIVPTSS---KLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGM 272

Query: 80  LSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQA 139
           L+  DFI IL         +   ELE H I  W+   LQ   K            PLV  
Sbjct: 273 LTITDFINILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNI 319

Query: 140 GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 199
            P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F       
Sbjct: 320 SPDASLLDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKP 373

Query: 200 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 259
             ++Q +  + +GT+            A + P   +  AL + V+  +S++P+VD++  +
Sbjct: 374 AFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKV 424

Query: 260 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 319
           +DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  
Sbjct: 425 VDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILET 474

Query: 320 VMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
           +++R+    V RLV+  EA S  + GIISLSD+ + L+
Sbjct: 475 IVDRIVRAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 171/359 (47%), Gaps = 44/359 (12%)

Query: 6   VRKVLHNTQRLIYS----FLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQ 61
           ++K+   T++ I      F+  +  H+C  +   S    +V  LD  LAVK AF+ L E 
Sbjct: 249 IKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISG---KVVVLDTKLAVKSAFYALEEN 305

Query: 62  GLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNLTEEELETHTISA-WKVGKLQL 119
           G+   PLW+  +  F G+++  DFI ++L       SN   +++  H I   W+    ++
Sbjct: 306 GIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWR----EI 361

Query: 120 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA 179
           +++R         P  L+   P  +L + A  +L  K+  +P++           IL++ 
Sbjct: 362 SVER---------PSSLISTEPETNLYDAASLLLCYKIHRLPVVD----KKDTNSILHIL 408

Query: 180 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSAL 239
           + S IL  + + F      L  L  P+ S+ +GT+   +      P         L   L
Sbjct: 409 THSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP---------LVEVL 457

Query: 240 ALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 298
            LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L       
Sbjct: 458 ELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TF 512

Query: 299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357
             L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  +LL 
Sbjct: 513 TKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.877	0.643	0.827	1e-147
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.877	0.651	0.827	1e-147
9965729	382	putative activator subunit of SNF1-relat	0.882	0.827	0.789	1e-142
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.882	0.648	0.789	1e-141
312281727	487	unnamed protein product [Thellungiella h	0.882	0.648	0.786	1e-141
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.882	0.659	0.786	1e-141
224123752	475	predicted protein [Populus trichocarpa]	0.882	0.665	0.780	1e-141
224123152	488	predicted protein [Populus trichocarpa]	0.882	0.647	0.777	1e-140
255542654	540	AMP-activated protein kinase, gamma regu	0.854	0.566	0.809	1e-140
356573006	478	PREDICTED: sucrose nonfermenting 4-like	0.879	0.658	0.745	1e-130

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/318 (82%), Positives = 287/318 (90%), Gaps = 4/318 (1%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLT
Sbjct: 174 KVIALDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLT 233

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATV
Sbjct: 234 EEELETHTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATV 290

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PIIHS    GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE
Sbjct: 291 PIIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGE 350

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           +NG+PFAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQI
Sbjct: 351 SNGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQI 410

Query: 281 HLDEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD M+IHQALQLGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS
Sbjct: 411 HLDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 470

Query: 340 KRVEGIISLSDVFRFLLG 357
           KRVEG+ISLSDVFRFLLG
Sbjct: 471 KRVEGVISLSDVFRFLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/318 (82%), Positives = 287/318 (90%), Gaps = 4/318 (1%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLT
Sbjct: 168 KVIALDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLT 227

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATV
Sbjct: 228 EEELETHTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATV 284

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PIIHS    GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE
Sbjct: 285 PIIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGE 344

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           +NG+PFAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQI
Sbjct: 345 SNGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQI 404

Query: 281 HLDEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD M+IHQALQLGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS
Sbjct: 405 HLDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 464

Query: 340 KRVEGIISLSDVFRFLLG 357
           KRVEG+ISLSDVFRFLLG
Sbjct: 465 KRVEGVISLSDVFRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9965729|gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4 [Arabidopsis thaliana]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 66  KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 125

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 126 EEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 183

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 184 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 243

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 244 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 303

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 304 HLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 363

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEGIISLSDVF+FLLG+
Sbjct: 364 KRVEGIISLSDVFQFLLGL 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 171 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 230

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 231 EEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 288

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 289 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 348

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 349 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 408

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 409 HLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 468

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEGIISLSDVF+FLLG+
Sbjct: 469 KRVEGIISLSDVFQFLLGL 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 171 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 230

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 231 EEELETHTIAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 288

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 289 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 348

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           ++ +P A LRP ASLGSAL+LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 349 SSSKPLATLRPHASLGSALSLLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 408

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 409 HLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLLKVMERLANPGVRRLVIVEAGS 468

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEGIISLSDVF+FLLG+
Sbjct: 469 KRVEGIISLSDVFQFLLGL 487

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 163 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 222

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 223 EEELETHTIAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 280

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 281 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 340

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 341 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 400

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+M +HQALQLGQD++P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 401 HLDDMTVHQALQLGQDSSPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 460

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEGIISLSDVF+FLLG+
Sbjct: 461 KRVEGIISLSDVFQFLLGL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/319 (78%), Positives = 284/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDV L VKQAFH+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLT
Sbjct: 159 KVIALDVTLPVKQAFHILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLT 218

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTISAWK GK+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TV
Sbjct: 219 EEELETHTISAWKEGKMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTV 276

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PIIHS    GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE
Sbjct: 277 PIIHSASQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGE 336

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
            N RPFAMLRP ASLG+AL+LL QA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQI
Sbjct: 337 PNRRPFAMLRPNASLGAALSLLAQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQI 396

Query: 281 HLDEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLDE++IHQALQLGQ+AN S  F NGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGS
Sbjct: 397 HLDEISIHQALQLGQNANSSNAFYNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGS 456

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEG+ISLSDVFRFLLG+
Sbjct: 457 KRVEGVISLSDVFRFLLGI 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/319 (77%), Positives = 285/319 (89%), Gaps = 3/319 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDV L VK+AFH+LYEQG+P  PLWD  KG+FVGVL+ALDFILILRELGT+GSNLT
Sbjct: 171 KVIALDVTLPVKRAFHILYEQGIPTAPLWDFCKGQFVGVLAALDFILILRELGTHGSNLT 230

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTISAWK GK+ L+  RQ+DG+GR   + L+ AGPYDSLK+VA KILQN ++TV
Sbjct: 231 EEELETHTISAWKEGKMHLS--RQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTV 288

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PI+HS+   GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE
Sbjct: 289 PILHSSAQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGE 348

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
            N RPFAML+P ASLG+AL+LLVQA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQI
Sbjct: 349 PNRRPFAMLKPNASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQI 408

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLDE++IHQALQLGQDAN S G FNGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGS
Sbjct: 409 HLDEISIHQALQLGQDANSSYGFFNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGS 468

Query: 340 KRVEGIISLSDVFRFLLGV 358
           KRVEG+ISLSDVFRFLLGV
Sbjct: 469 KRVEGVISLSDVFRFLLGV 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/309 (80%), Positives = 278/309 (89%), Gaps = 3/309 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALDVNL VKQAFHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLT
Sbjct: 161 KVIALDVNLPVKQAFHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLT 220

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           EEELETHTISAWK GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+
Sbjct: 221 EEELETHTISAWKEGKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTI 278

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PIIHS+   GS  ++L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE
Sbjct: 279 PIIHSSSRDGSFPQLLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGE 338

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
           +N RPFAMLRP ASLG AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI
Sbjct: 339 SNVRPFAMLRPNASLGDALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 398

Query: 281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           HLD+++IHQALQLGQDAN   G FNGQRCQMCL SDPLHKVMERLANPGVRRL+IVEAGS
Sbjct: 399 HLDKISIHQALQLGQDANSPYGFFNGQRCQMCLGSDPLHKVMERLANPGVRRLLIVEAGS 458

Query: 340 KRVEGIISL 348
           KRVEG+ISL
Sbjct: 459 KRVEGVISL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573006|ref|XP_003554656.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/318 (74%), Positives = 272/318 (85%), Gaps = 3/318 (0%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           +V ALD+NL VKQAFHVLYEQG+ M PLWD FK +FVGVLSA+DFILIL+ELG +GSNLT
Sbjct: 163 KVIALDINLPVKQAFHVLYEQGVSMAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLT 222

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           +E+LETHTI+AWK GK Q    R +D NG   P   V AGP++ LK+VALK+LQNKV+TV
Sbjct: 223 QEQLETHTIAAWKEGKFQQ--FRTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTV 280

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           PIIHS+   GS  ++L+LASLS ILK ICRHFKHS SSLPILQ PV+SI LGTW+PR+GE
Sbjct: 281 PIIHSSSEDGSYPQLLHLASLSGILKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGE 340

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
            NGRP AML P+ASLG+AL++ VQA VSSIPIVD NDSLLDIYSRSDITALAKDKAYA+I
Sbjct: 341 PNGRPLAMLMPSASLGAALSMFVQAKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARI 400

Query: 281 HLDEMNIHQALQLGQDA-NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
            LDE++IHQAL LGQDA +PS  +NGQRC MCLRS+ L+KVMERLANPGVRRLV+VEAGS
Sbjct: 401 SLDEISIHQALLLGQDATSPSGIYNGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGS 460

Query: 340 KRVEGIISLSDVFRFLLG 357
           KRVEGIISLSDVFRFLLG
Sbjct: 461 KRVEGIISLSDVFRFLLG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.882	0.648	0.789	2.2e-130
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.547	0.601	0.285	1.8e-27
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.547	0.371	0.285	5.1e-26
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.547	0.346	0.285	8.9e-26
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.544	0.345	0.284	1.8e-25
UNIPROTKB|Q9UGJ0	569	PRKAG2 "5'-AMP-activated prote	0.547	0.344	0.285	2.1e-25
UNIPROTKB|F1P1P1	382	PRKAG3 "Uncharacterized protei	0.547	0.513	0.258	1.3e-21
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.460	0.285	0.311	2.1e-21
UNIPROTKB|F8W9D1	247	PRKAG1 "5'-AMP-activated prote	0.550	0.797	0.300	1.2e-16
UNIPROTKB|B4DDT7	299	PRKAG1 "cDNA FLJ58311, highly	0.550	0.658	0.300	1.7e-15

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
 Identities = 252/319 (78%), Positives = 284/319 (89%)

Query:    41 QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
             +V ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct:   171 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 230

Query:   101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
             EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct:   231 EEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 288

Query:   161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
             P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct:   289 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 348

Query:   221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
             ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct:   349 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 408

Query:   281 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
             HLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct:   409 HLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 468

Query:   340 KRVEGIISLSDVFRFLLGV 358
             KRVEGIISLSDVF+FLLG+
Sbjct:   469 KRVEGIISLSDVFQFLLGL 487

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   116 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 169

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   170 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 220

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   221 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 270

Query:   314 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   271 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 312

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   318 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 371

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   372 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 422

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   423 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 472

Query:   314 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   473 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 514

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 8.9e-26, Sum P(2) = 8.9e-26
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   356 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 409

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   410 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 460

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   461 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 510

Query:   314 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
 Identities = 64/225 (28%), Positives = 116/225 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   355 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFM 408

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     +++ +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   409 SEMPKPAFMKKNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 459

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ-RCQMCL 312
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G  +C M  
Sbjct:   460 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEGVVKCSML- 510

Query:   313 RSDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
               + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 --ETLETIVDRIVKAEVHRLVVVNEADS--IVGIISLSDILQALV 551

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   359 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 412

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   413 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 463

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   464 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNK 513

Query:   314 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 356
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   514 LEILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IMP

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IMP

GO:0008607 "phosphorylase kinase regulator activity" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IDA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0046324 "regulation of glucose import" evidence=TAS

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0016126 "sterol biosynthetic process" evidence=TAS

GO:0019217 "regulation of fatty acid metabolic process" evidence=IMP

UNIPROTKB|F1P1P1 PRKAG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 58/224 (25%), Positives = 116/224 (51%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P DSL +    ++++K+  +P+I     +G+   +L++ +   ILK +  H  
Sbjct:   175 KPLVYISPSDSLFDAVYSLIKHKIHRLPVIEPI--SGN---VLHILTHKRILKFL--HIF 227

Query:   194 HSSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 252
              S+   P  L++ V  + +GT+         R  A++   A + +AL + V   VS++P+
Sbjct:   228 GSTIPKPRFLKKTVQELCVGTF---------RDVAVVPENAPVYAALEIFVDRRVSALPV 278

Query:   253 VDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 312
             V+    ++ +YSR D+  LA  K Y  +   ++++ +AL+       ++   G     C 
Sbjct:   279 VNAAGQVVGLYSRFDVIHLAAQKTYNNL---DISVREALR-----QRTVCLEG--VLTCY 328

Query:   313 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
               + +  +++R+A   V RLV+V+  ++   GI+SLSD+ + L+
Sbjct:   329 PHETMEDIIDRIAEEQVHRLVLVDE-NRYPRGIVSLSDILQALV 371

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 57/183 (31%), Positives = 93/183 (50%)

Query:   175 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 234
             IL++ + S IL  + + F      L  L  P+ S+ +GT+   +      P         
Sbjct:   404 ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP--------- 452

Query:   235 LGSALALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293
             L   L LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L  
Sbjct:   453 LVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS- 510

Query:   294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353
                    L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  
Sbjct:   511 ---TFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILN 566

Query:   354 FLL 356
             +LL
Sbjct:   567 YLL 569

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F8W9D1 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 67/223 (30%), Positives = 116/223 (52%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:    43 KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE--SGNT---LYILTHKRILKFL-KLFI 96

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     + + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+V
Sbjct:    97 TEFPKPEFMSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVV 147

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D+   ++DIYS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C  
Sbjct:   148 DEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYL 197

Query:   314 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct:   198 HETLETIINRLVEAEVHRLVVVDENDV-VKGIVSLSDILQALV 239

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

UNIPROTKB|B4DDT7 PRKAG1 "cDNA FLJ58311, highly similar to 5'-AMP-activated protein kinase subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 67/223 (30%), Positives = 116/223 (52%)

Query:   134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:    95 KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE--SGNT---LYILTHKRILKFL-KLFI 148

Query:   194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                     + + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+V
Sbjct:   149 TEFPKPEFMSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVV 199

Query:   254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
             D+   ++DIYS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C  
Sbjct:   200 DEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYL 249

Query:   314 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct:   250 HETLETIINRLVEAEVHRLVVVDENDV-VKGIVSLSDILQALV 291

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O54950	AAKG1_MOUSE	No assigned EC number	0.3141	0.8016	0.8696	yes	no
Q944A6	SNF4_ARATH	No assigned EC number	0.7899	0.8826	0.6488	yes	no
Q09138	AAKG1_PIG	No assigned EC number	0.3141	0.8016	0.8696	yes	no
P54619	AAKG1_HUMAN	No assigned EC number	0.3141	0.8016	0.8670	yes	no
P80385	AAKG1_RAT	No assigned EC number	0.3141	0.8016	0.8696	yes	no
P58108	AAKG1_BOVIN	No assigned EC number	0.3141	0.8016	0.8696	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-37
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	6e-19
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	7e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	9e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	4e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	3e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	5e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	6e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.002
pfam00571	57	pfam00571, CBS, CBS domain	0.003
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.003
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.003
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.003
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.003
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.003
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  128 bits (325), Expect = 7e-37
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 284 EMNIHQALQLGQDANPSLGFNG-QRCQ--MCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
                +AL+          F G + C    CLR+     V  R     V RLV+V+   K
Sbjct: 61  VG---EALERRSQ-----DFEGVRTCSPDDCLRTIFDLIVKAR-----VHRLVVVDEN-K 106

Query: 341 RVEGIISLSDVFRF 354
           RVEGIISLSD+ +F
Sbjct: 107 RVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 80.4 bits (199), Expect = 6e-19
 Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 50/147 (34%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
           +++   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILK 186
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 282
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 283 DEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 342
            ++     + +  D                    L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVVTVSPD------------------TSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 343 EGIISLSDVFRF 354
            GI++ SD+ R 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 254 DDNDSLLDIYSRSDI 268
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 231 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 290
              ++   LAL+        P+VDD   L+ I + +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 350
                 A+P               + L   ++R+A   + RL +V+  S R+ GI+S SD
Sbjct: 66  PVT---ASPD--------------ETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 351 VFRF 354
           + R 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (105), Expect = 9e-06
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 230 RPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIH 288
           RP A++  A  L+ + ++ ++ +VDD   L+ I+S  DI   +A   A A     +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA----LDTPVS 62

Query: 289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 348
           + +      N                D + + M  +     R L +V+ G  ++ GI+S+
Sbjct: 63  EIMT----RNV---------ITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 349 SDVFRF 354
            DV + 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
           +    ++P  S+  AL L+ +  VS++P+VDD   L+ I +  DI           + + 
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVK 65

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA-NPGVRRLVIVEAGSKRV 342
           E+     + +  D                   PL + +E +     +RRL +V+    ++
Sbjct: 66  EVMTKPVVTVDPD------------------TPLEEALELMVERHKIRRLPVVDDDGGKL 107

Query: 343 EGIISLSDVF 352
            GII+LSD+ 
Sbjct: 108 VGIITLSDIL 117

Length = 117

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 27/133 (20%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 282
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVK- 58

Query: 283 DEM--NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
           D M  ++        D +  L             D +  + +      V RL++ +   +
Sbjct: 59  DVMTKDVITI-----DEDEQL------------YDAIRLMNKH----NVGRLIVTDDEGR 97

Query: 341 RVEGIISLSDVFR 353
            V GII+ +D+ R
Sbjct: 98  PV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 287
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+  
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVAT 65

Query: 288 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK-RVEGII 346
              L +  D                  +PL   ++R+A+ G+R+L +V+ G+  +V G++
Sbjct: 66  PPLLTVHPD------------------EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLL 107

Query: 347 SLSDV 351
           +  +V
Sbjct: 108 TRENV 112

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 227 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE 284
             + P  ++  A  L+ + DV ++P+ + ND L+ I +  DI   A+A+ +      + +
Sbjct: 4   VTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGD 62

Query: 285 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 344
           +     +                       D + +    +    VRRL +V+    R+ G
Sbjct: 63  VMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVG 103

Query: 345 IISLSDV 351
           I+SL D+
Sbjct: 104 IVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 254 DDNDSLLDIYSRSDIT 269
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 281
           RP     P  ++  A  L+ +  VSS+ +V D+  L+ I +  D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDPDTP- 58

Query: 282 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 341
           + E+     + +  DA                 + L  ++ER    G+  L +V+ G  R
Sbjct: 59  VSEVMTAPPITIPPDA--------------TVFEALLLMLER----GIHHLPVVDDG--R 98

Query: 342 VEGIISLSDVFRF 354
           + G+IS +D+ R 
Sbjct: 99  LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 313 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
            +  L + +E L + G+ R+ + E  S  V GI+S   +  FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 35/147 (23%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
             V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +    
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVT 59

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
             + +                             R +V   P  SL+E A  +L++ +  
Sbjct: 60  VGDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRR 91

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILK 186
           +P++   G       ++ + + SDIL+
Sbjct: 92  LPVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 238 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 297
           A  L+ + ++S +P+VD+   L+   S SD+  L          L    I          
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---LLSPDDLLLYRTITFKELSE--K 69

Query: 298 NPSLGFNGQRCQM-CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354
                    R  + C  S  L +V+ +L    V R+ +V+   K   G+I+L+D+   
Sbjct: 70  FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 194
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 195 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 252
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 253 VDDNDSLLDIYSRSDI 268
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 314 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357
              L + +E +   G+ RL +V     ++ GI++L D+ R LL 
Sbjct: 15  DTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 31/120 (25%)

Query: 237 SALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296
             L LL +  VS +P+V  +  L+ I +R D+            + +E  +  AL + +D
Sbjct: 14  DVLELLKEYKVSGVPVVKKSGELVGIITRKDLL----------RNPEEEQL--ALLMTRD 61

Query: 297 ---ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353
               +P               D + +  + +    +RR+ +V+    ++ GI++++D+ R
Sbjct: 62  PPTVSPD--------------DDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
                + P   +  A  L+++A++S +P+V DND+++ + +++DI
Sbjct: 89  EEIITVSPNDDVVDAAKLMLEANISGLPVV-DNDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
           P   + P  S+ +A+ L+++ D+  +P+V++ D L+ I  R D+
Sbjct: 76  PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268
           +R   S+G A+ +L +  +S +P+VDDN  L  I +R DI
Sbjct: 6   VREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDI 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
            P   +RP A++  A  LL++   +++P+V+    ++ I SR D+     +KA   +   
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDV-----EKA---LRHG 52

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
                    LG    P   +            PL +V E +    + R+ +VE G  R+ 
Sbjct: 53  ---------LGHA--PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDG--RLV 99

Query: 344 GIISLSDVFRF 354
           GI++ +D+ R 
Sbjct: 100 GIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
                  P  SL  A + + +  +SSI +V D+   L I +  DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 284 EMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV-EAGSKR 341
                  L  G D    +G               L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 342 VEGIISLSDVFR 353
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
COG2524	294	Predicted transcriptional regulator, contains C-te	99.81
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.73
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.72
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.7
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
COG3620	187	Predicted transcriptional regulator with C-termina	99.65
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.65
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.65
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.64
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.62
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.62
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.61
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.61
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.6
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.6
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.59
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.59
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.58
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.57
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.57
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.56
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.56
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.56
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.56
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.56
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.56
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.55
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.55
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.55
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.55
COG2905	610	Predicted signal-transduction protein containing c	99.55
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.55
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.55
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.54
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.54
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.54
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.54
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.54
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.54
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.53
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.53
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.53
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.53
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.53
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.53
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.53
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.52
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.52
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.52
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.52
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.52
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.52
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.51
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.51
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.51
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.51
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.51
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.5
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.5
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.5
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.5
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.5
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.49
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.48
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.48
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.47
COG3620	187	Predicted transcriptional regulator with C-termina	99.47
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.47
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.47
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.47
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.47
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.47
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.46
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.45
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.45
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.45
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.45
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.45
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.43
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.43
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.42
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.42
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.42
COG0517	117	FOG: CBS domain [General function prediction only]	99.42
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.42
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.41
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.41
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.41
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.41
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.41
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.41
COG4109	432	Predicted transcriptional regulator containing CBS	99.4
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.4
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.4
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.39
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.39
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.39
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.38
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.38
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.38
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.38
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.37
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.37
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.37
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.37
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.37
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.36
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.36
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.36
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.36
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.36
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.36
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.36
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.35
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.35
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.35
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.35
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.34
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.34
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.34
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.33
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.32
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.32
COG0517	117	FOG: CBS domain [General function prediction only]	99.32
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.32
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.31
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.3
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.3
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.3
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.29
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.29
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.29
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.28
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.28
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.28
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.28
COG2905	610	Predicted signal-transduction protein containing c	99.28
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.28
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.27
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.27
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.26
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.26
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.24
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.24
PRK11573	413	hypothetical protein; Provisional	99.23
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.22
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.22
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.22
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.21
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.19
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.19
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.13
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.1
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.1
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.09
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.07
COG4109	432	Predicted transcriptional regulator containing CBS	99.07
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.06
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.04
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.02
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.99
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.85
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.8
PRK11573	413	hypothetical protein; Provisional	98.78
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.77
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.72
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.69
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.68
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.57
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.55
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.46
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.42
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.37
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.2
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.16
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.15
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.01
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.94
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.93
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.6
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.37
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.93
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.86
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	95.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.31
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.04
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	93.14
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.33
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	85.8

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=3.1e-35  Score=276.11  Aligned_cols=303  Identities=27%  Similarity=0.485  Sum_probs=253.8

Q ss_pred             HHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccC
Q 018309           16 LIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN   95 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~   95 (358)
                      .-..+..||+.+.||+.+|   .+++++++|...++.+||+.|..++.+++|+||....++.|++++.|++.++..++..
T Consensus        55 ~~~~~~~~~~~~~~~~~~p---~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~  131 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLP---TSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKS  131 (381)
T ss_pred             hhHHHHHHHhccCcccccC---CcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhcc
Confidence            4456677788999999997   5599999999999999999999999999999999999999999999999988777763


Q ss_pred             CCCC-CHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcce
Q 018309           96 GSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  174 (358)
Q Consensus        96 ~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~  174 (358)
                      +... ..+.++......+.......         +....++++.+.+..++.++...+.+++++++||.|  .+.|   +
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~  197 (381)
T KOG1764|consen  132 KSSLDNIEVLEDSQLSKRREVECLL---------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---E  197 (381)
T ss_pred             CCcHHHHhhhhhhhccccchhhhhh---------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---c
Confidence            2111 11222222222232221111         112345559999999999999999999999999996  3455   8


Q ss_pred             EEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc
Q 018309          175 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD  254 (358)
Q Consensus       175 ~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd  254 (358)
                      +.+++|++.+++|++.+.+..+ +..++..++.++++|+|.         .+..+.+++++.+|+++|...+++.+||||
T Consensus       198 v~~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~  267 (381)
T KOG1764|consen  198 VLYILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD  267 (381)
T ss_pred             eeeehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence            9999999999999999988876 678899999999999986         689999999999999999999999999999


Q ss_pred             CCCcEEEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEE
Q 018309          255 DNDSLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV  333 (358)
Q Consensus       255 ~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~-v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~  333 (358)
                      ..|+.+|+++..|+..+..++.|..+.   .+ +.+++..+.       ....++++|++++||.+++.+|..+++||+|
T Consensus       268 ~~g~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~  337 (381)
T KOG1764|consen  268 ENGKKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLW  337 (381)
T ss_pred             CCCceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEE
Confidence            999999999999999999988887764   45 777776544       3345689999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHhh
Q 018309          334 IVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       334 Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      ||| ++|.++|+||++|++.+++
T Consensus       338 VVd-~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  338 VVD-EDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             EEc-CCCcEEEEeeHHHHHHHHH
Confidence            999 5899999999999999985

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.81  E-value=2.4e-19  Score=153.70  Aligned_cols=122  Identities=17%  Similarity=0.374  Sum_probs=112.5

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  295 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~  295 (358)
                      .+++++|.++++++.+++++.+|.++|.++++++.||+|++ +++|++|.+|+...+.++.+      +..+++      
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~------~~kV~~------  238 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL------DAKVSD------  238 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence            46789999999999999999999999999999999999865 99999999999998887743      467888      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  358 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~~  358 (358)
                             +|.++++++..|+.+.+|++.|..+++.||.|+| .+|+++|+||++|||+.+++.
T Consensus       239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence                   8889999999999999999999999999999999 489999999999999998763

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.73  E-value=9.3e-17  Score=140.30  Aligned_cols=173  Identities=17%  Similarity=0.270  Sum_probs=134.5

Q ss_pred             eEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHH-HHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHh
Q 018309           75 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  153 (358)
Q Consensus        75 ~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~  153 (358)
                      .-+|+ +..|+...++.+.+. -+++.++++.+..+. .....+...+..|.|    +|.+.++++.+++++.+|...|.
T Consensus       199 ~rvgf-s~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVGF-SSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRMGELTCAD----IMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccCC-CHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCccceecCCcCChHHHHHHHH
Confidence            44564 889999999887653 355667777653332 334444444445555    79999999999999999999999


Q ss_pred             hCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCC
Q 018309          154 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA  233 (358)
Q Consensus       154 ~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~  233 (358)
                      +|+++.+||+|+   ..   +++|+++++|+.+....          ...+.++.+    ..++++.+|+.++.++.+++
T Consensus       273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence            999999999975   33   79999999999882110          112222221    23578888999999999999


Q ss_pred             CHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          234 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       234 ~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      +..+.+-.+.+.+.+++||+|++|+++|++|++|++..+.
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            9999999999999999999999999999999999998554

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.72  E-value=2.9e-17  Score=143.46  Aligned_cols=128  Identities=19%  Similarity=0.375  Sum_probs=109.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      .++++|.++++++++++++.+|.+.|.+|+++.+||+|++.+++|+++++|+.+-.+-..+++++.        +   + 
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~--------~---~-  313 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRF--------L---R-  313 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhc--------c---C-
Confidence            567899999999999999999999999999999999999999999999999998544333333321        1   1 


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ++...++|++++.|+.++++..+.+-++.+.+.|.+||+| +.|+++|+||.+|++.++..
T Consensus       314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence            1111139999999999999999999999999999999999 58999999999999998764

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.70  E-value=5.4e-16  Score=123.37  Aligned_cols=119  Identities=39%  Similarity=0.659  Sum_probs=96.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|++.....+.....   ..++.+++..+.       .|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence            57789999999999999999999999999999999999999999986543322111   123444222111       45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++++++++.++++.|.+++.+++||+| ++|+++|+||+.|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence            56789999999999999999999999999999 47899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=2.9e-16  Score=134.88  Aligned_cols=122  Identities=19%  Similarity=0.318  Sum_probs=107.2

Q ss_pred             ccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccc
Q 018309          124 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ  203 (358)
Q Consensus       124 ~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~  203 (358)
                      +...++.+|.++++++.+++|+.+|..+|.+++++..||+|+    +   +++|++|.+|+...+...            
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g------------  230 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG------------  230 (294)
T ss_pred             CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC------------
Confidence            344556789999999999999999999999999999999975    3   799999999999966532            


Q ss_pred             ccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          204 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       204 ~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                               ....+|+++|.++++++.+++.+.||+++|..+++.++.|+|.+|+++|++|++|++..+.
T Consensus       231 ---------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 ---------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ---------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                     1123566779999999999999999999999999999999999999999999999998653

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.65  E-value=1.4e-15  Score=121.35  Aligned_cols=119  Identities=18%  Similarity=0.389  Sum_probs=100.7

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      +..+|..+++.+.+++++.++.++|.++|++.+||+++ |+++|-||..++.+...++-.   ...+.++.+        
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~--------  134 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVRE--------  134 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHH--------
Confidence            44569999999999999999999999999999999986 999999999999997654431   122566777        


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                           +|..+++++++++++..+-+.+..++.  +.|++  +|+++|+||..||++.+.+
T Consensus       135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 -----VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -----HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence                 888999999999999988887777654  66776  5999999999999998765

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.65  E-value=3.2e-15  Score=117.24  Aligned_cols=110  Identities=12%  Similarity=0.265  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... ..+     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~-----~~~~v~~-------------~~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-NDY-----ETLKVCE-------------VY   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-ccc-----cccChhh-------------ee
Confidence            3678899999999999999999999999999999999999999987421 111     1234555             56


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~  111 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF  111 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence            66788999999999999999999999999999 47999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=4.8e-15  Score=116.78  Aligned_cols=111  Identities=16%  Similarity=0.287  Sum_probs=94.9

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  305 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~  305 (358)
                      +.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.......   ...+.++.+             +|.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~-------------~~~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVEN-------------VMT   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHH-------------Hhc
Confidence            6788999999999999999999999999999999999999999875532111   111356666             556


Q ss_pred             ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .++.++++++++.+|++.|.+++.+++||+| ++|+++|+||+.|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence            6889999999999999999999999999999 4789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=3.2e-15  Score=114.76  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=85.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      .++++++++++.+|.+.|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            47889999999999999999999999999974 89999999999976211                              


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF  354 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~~  354 (358)
                          +.++++++++.+|++.|.+++++++||+| ++ |+++|+||.+|++++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence                46799999999999999999999999999 46 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.3e-14  Score=114.23  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=94.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+..+....   .+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------~   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP---DRVNVYE-------------I   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC---CccCHHH-------------H
Confidence            47789999999999999999999999999987 99999999999988543321111   1345666             5


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      |.+++.++++++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence            556889999999999999999999999999999 4 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.6e-14  Score=114.51  Aligned_cols=111  Identities=22%  Similarity=0.319  Sum_probs=93.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|+......+.    .....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~   64 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM   64 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence            5678999999999999999999999999998899999999999988654221    111345666             44


Q ss_pred             Cc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC---CeEEEEEehHHHHH
Q 018309          305 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS---KRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~---~~liGvis~~Dil~  353 (358)
                      .+  ++.++++++++.++++.|.+++++++||+|+ +   |+++|+||..|+++
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            32  6889999999999999999999999999994 5   69999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.61  E-value=9.6e-15  Score=136.72  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=104.2

Q ss_pred             ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          216 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       216 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      .+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+.    .+.+.++.+    
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~----  273 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD----  273 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence            367888987  8999999999999999999999988899998999999999999987554321    122356777    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                               +|.+++.++.+++++.+|++.|.+++++++||+++  |+++|+||+.|++++
T Consensus       274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence                     77788999999999999999999999999999983  899999999999975

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.61  E-value=2.4e-14  Score=112.83  Aligned_cols=112  Identities=20%  Similarity=0.343  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.....+.....    ..++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~----~~~~~~-------------~~   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE----PSAVDE-------------VA   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc----cccHHH-------------hc
Confidence            4678899999999999999999999999999999999999999998654322111    233555             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~--~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +  |+++|+||..|++++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            668999999999999999999999999999994 5  799999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.60  E-value=7.3e-15  Score=117.76  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=95.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++....++....    +.++.+             +|
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence            5788999999999999999999999999999899999999999997554332211    457777             77


Q ss_pred             CccceEEcCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          305 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~---------~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                      .+++.++.+++++.++.+.+.         ..+.+++||+| ++|+++|+||..|+++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            778999999999999999653         34678889999 579999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.60  E-value=2.7e-14  Score=113.99  Aligned_cols=117  Identities=21%  Similarity=0.370  Sum_probs=95.9

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCC
Q 018309          224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA  297 (358)
Q Consensus       224 ~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l------~~~~~~v~~~l~~~~~~  297 (358)
                      +++.++.+++++.++.+.|.+.+.+++||+|++|+++|+++..|++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            357889999999999999999999999999988999999999999875543221000      001223444        


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                           +|.+++.++++++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence                 6667899999999999999999999999999999 47999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.59  E-value=1.7e-14  Score=134.81  Aligned_cols=120  Identities=13%  Similarity=0.193  Sum_probs=105.0

Q ss_pred             ccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          216 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       216 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      .+|+++|.++  +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+.+..+..  .   +.++.+    
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~--~---~~~v~~----  267 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA--L---TTPVNE----  267 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC--c---CCcHHH----
Confidence            4688889988  9999999999999999999999999999999999999999999875543211  1   345666    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                               +|.+++.++.+++++.+|++.|.+++..++||+| ++|+++|+||..|++++
T Consensus       268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence                     7777899999999999999999999999999999 47899999999999975

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=5.2e-14  Score=110.16  Aligned_cols=112  Identities=21%  Similarity=0.404  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+++..|++..+.......   ...++.+             +|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence            4678899999999999999999999999998899999999999998654322110   1245666             56


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            66889999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.58  E-value=7.3e-14  Score=108.97  Aligned_cols=107  Identities=20%  Similarity=0.425  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.....+        ..++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~--------~~~~~~-------------~~   61 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--------KKSVED-------------IM   61 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC--------ccCHHH-------------hc
Confidence            577899999999999999999999999999899999999999998755432        123455             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|.+++.+++||++ ++|+++|+||+.|+++
T Consensus        62 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~  109 (110)
T cd04605          62 TRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK  109 (110)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence            56789999999999999999999999999999 4799999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=4.2e-14  Score=113.46  Aligned_cols=121  Identities=21%  Similarity=0.322  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHH---HHHhcCCCCCCCc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL  301 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~---~~l~~~~~~~~~~  301 (358)
                      .+.++++++++.++++.|.+++++++||+|++|+++|+++..|++....++.. ..   ..+..   .......   ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~-~~---~~~~~~~~~~~~~~~---~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD-LL---LYRTITFKELSEKFT---DSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch-hh---cccchhhhhhhhhcc---ccc
Confidence            46789999999999999999999999999999999999999999986532211 00   00000   0000000   000


Q ss_pred             ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..+..++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence            14567899999999999999999999999999999 4799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.57  E-value=2.1e-14  Score=139.54  Aligned_cols=212  Identities=15%  Similarity=0.166  Sum_probs=149.4

Q ss_pred             EeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhh---
Q 018309           78 GVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ---  154 (358)
Q Consensus        78 Gilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~---  154 (358)
                      .-++..|+..++.....   ....+-+....-.+.......+.  |..+.+|++|.++++++++++++.+|++.|.+   
T Consensus        88 ~~l~~dd~~~ll~~l~~---~~~~~lL~~l~~~er~~i~~ll~--~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~  162 (449)
T TIGR00400        88 NEMNLDDVIDLLEEVPA---NVVQQLLASSTEEERKAINLLLS--YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK  162 (449)
T ss_pred             HcCChhHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhC--CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence            34555555555543321   11111222233333333444444  77888899999999999999999999999975   


Q ss_pred             --CCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCC
Q 018309          155 --NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT  232 (358)
Q Consensus       155 --~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~  232 (358)
                        ++...++|+|+   ++   +++|+++.+|++..      .       .+            ..++++|.++++++.++
T Consensus       163 ~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-------~~------------~~v~~im~~~~~~v~~~  211 (449)
T TIGR00400       163 TKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-------PE------------EILSSIMRSSVFSIVGV  211 (449)
T ss_pred             CccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-------CC------------CcHHHHhCCCCeeECCC
Confidence              45678888864   34   79999999998650      0       11            13455688889999999


Q ss_pred             CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEc
Q 018309          233 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL  312 (358)
Q Consensus       233 ~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~  312 (358)
                      +++.+|++.|.+++...+||+|++|+++|++|.+|++..+.+..          .++++.             ...++..
T Consensus       212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----------~ed~~~-------------~~gv~~~  268 (449)
T TIGR00400       212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----------TEDFYM-------------IAAVKPL  268 (449)
T ss_pred             CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----------HHHHHH-------------hcCCCCC
Confidence            99999999999999999999999999999999999998765431          134222             2233445


Q ss_pred             CCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          313 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       313 ~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      +++.+.+++.+|.+++..+++|.-     +.|++| ..++..
T Consensus       269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence            678889999999999998887643     555555 555444

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.9e-14  Score=112.06  Aligned_cols=119  Identities=19%  Similarity=0.269  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +..........       .+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRDL-------TI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhhc-------cc
Confidence            57789999999999999999999999999987 99999999999988653321100000 00000001000       14


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  352 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil  352 (358)
                      |..++.++++++++.+|++.|.+++.+++||+| ++|+++|+||+.|+-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence            567889999999999999999999999999999 478999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.56  E-value=1.2e-13  Score=108.53  Aligned_cols=109  Identities=18%  Similarity=0.285  Sum_probs=93.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  305 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~  305 (358)
                      +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.....++..  .   +.++.+             +|.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~---~~~v~~-------------~~~   65 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS--L---DDPVSE-------------VMN   65 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC--c---CCCHHH-------------hhc
Confidence            5678999999999999999999999999999999999999999875543211  1   245666             555


Q ss_pred             ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .++.++++++++.++++.|.+++.+++||+| ++|+++|+||..|++.
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  112 (113)
T cd04607          66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence            6788999999999999999999999999999 4799999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=9.9e-14  Score=112.91  Aligned_cols=115  Identities=15%  Similarity=0.216  Sum_probs=94.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc-------------------cccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------------------LDEM  285 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~-------------------~~~~  285 (358)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|++............                   ..+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            467889999999999999999999999999999999999999999865422111000                   0012


Q ss_pred             cHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       286 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ++.+             +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||..|++++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE  135 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence            3444             6667889999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=6.1e-14  Score=110.09  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+.+.+..+..  ....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~-------------~~   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRD-------------IM   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHH-------------Hh
Confidence            4678999999999999999999999999999999999999999987554322211  11345666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            56788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=8.1e-14  Score=108.91  Aligned_cols=109  Identities=21%  Similarity=0.376  Sum_probs=93.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.........      +.++.+             +|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence            46778999999999999998899999999988999999999999886543211      235565             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|..++.+++||+| ++|+++|++|..|+.+
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~  110 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE  110 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence            56789999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.4e-14  Score=107.42  Aligned_cols=95  Identities=16%  Similarity=0.368  Sum_probs=86.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      +++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            577899999999999999999999999999899999999999998621                                


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                        .+.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence              156889999999999999999999999999 46899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.2e-13  Score=108.34  Aligned_cols=110  Identities=20%  Similarity=0.352  Sum_probs=93.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  305 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~  305 (358)
                      +.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.....++..    +.+.++.+             +|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~   65 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN   65 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence            5678999999999999999999999999988999999999999874432211    11345665             555


Q ss_pred             ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .++.++.+++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR  112 (113)
T ss_pred             CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence            6789999999999999999999999999999 4789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=1.6e-13  Score=107.43  Aligned_cols=110  Identities=18%  Similarity=0.367  Sum_probs=94.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++.+.|.+.+.+++||+|++|+++|+++..|++..+.++..  .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~--~---~~~v~~-------------~~   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID--L---DTPVSE-------------IM   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC--C---ccCHHH-------------hc
Confidence            46789999999999999999999999999988999999999999886544321  1   345555             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|.+++...+||+| ++|++.|++|..|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence            66789999999999999999999999999999 4799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.55  E-value=6.7e-14  Score=110.07  Aligned_cols=111  Identities=22%  Similarity=0.376  Sum_probs=90.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++.+|++...... +     .+.++.+++..          
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~-----~~~~v~~~~~~----------   65 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ-W-----AQTTVIQVMTP----------   65 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh-c-----cccchhhhhcc----------
Confidence            4678999999999999997775 89999999889999999999998865321 1     12455553210          


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                       ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|++|..||++
T Consensus        66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR  113 (114)
T ss_pred             -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence             02366899999999999999999999999999 4789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=108.77  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l-~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+...+...... .+...++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence            46789999999999999999999999999988999999999999886543211110 000234555             5


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      |..++.++.+++++.+|++.|.+.+  .+||+| ++|+++|++|..|++++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence            6667899999999999999998865  599999 57999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=109.76  Aligned_cols=116  Identities=19%  Similarity=0.323  Sum_probs=95.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l-----~~~~~~v~~~l~~~~~~~~  299 (358)
                      ++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+............     .....++.+          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence            46789999999999999999999999999988999999999999886542211100     001334555          


Q ss_pred             CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                         ++..++.++.+++++.++++.|.+.+.+++||+| ++|+++|++|..|++++
T Consensus        72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL  122 (122)
T ss_pred             ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence               5566889999999999999999999999999999 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.1e-13  Score=110.56  Aligned_cols=116  Identities=16%  Similarity=0.271  Sum_probs=94.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccc-------ccccccHHHHHhcCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQI-------HLDEMNIHQALQLGQD  296 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l-------~~~~~~v~~~l~~~~~  296 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+...+.+......       ...+.++.+       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS-------   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence            46788999999999999999999999999987 999999999999986643221100       000223444       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                            ++..++.++++++++.++++.|.+.+.+++||+| ++|+++|+||..||+++
T Consensus        75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence                  4556799999999999999999999999999999 46899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.55  E-value=3.3e-14  Score=134.86  Aligned_cols=122  Identities=24%  Similarity=0.363  Sum_probs=108.2

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  295 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~  295 (358)
                      +++++.+..+++++++.+++.+|.+.|.++|++++.++++++...||+|++|+....-....    ..+.++.+      
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~----~~~~~V~e------  218 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR----SKTQKVSE------  218 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC----Ccccchhh------
Confidence            46778899999999999999999999999999999999999999999999999985433221    11456776      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                             +|+.|+++++.++.+.+|+-+|..++++|+||.++  |+++|+||.+||++.+.
T Consensus       219 -------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         219 -------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS  270 (610)
T ss_pred             -------hhccCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence                   88999999999999999999999999999999994  99999999999999874

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.7e-13  Score=107.18  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++++++++.++++.|.+++.+++||+|++|+++|+++..|+.........     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence            46789999999999999999999999999988999999999999875432211     1245666             45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .+++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            56789999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.55  E-value=9.9e-14  Score=108.03  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++.+.|.+++.+.+||+|++|+++|+++..|+.....          +.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence            5778999999999999999999999999999999999999999975210          345666             45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|..++.+.+||+| ++|+++|++|..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4799999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=1.8e-13  Score=106.02  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=90.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....           .++.+             +|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence            4678999999999999999999999999998899999999999986421           12344             45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .+++.++.+++++.++++.|.+++..++||+| ++|+++|+||..|+++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence            55678899999999999999999999999999 4789999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.6e-13  Score=110.22  Aligned_cols=117  Identities=22%  Similarity=0.371  Sum_probs=93.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-ccc--------cccccHHHHHhcCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIH--------LDEMNIHQALQLGQ  295 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l~--------~~~~~v~~~l~~~~  295 (358)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+...+....+. ...        ..+.++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            466889999999999999999999999999999999999999998754321110 000        00123333      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF  354 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~~~~liGvis~~Dil~~  354 (358)
                             +|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||..|++++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence                   66678999999999999999999999999999851 36899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.54  E-value=2.1e-13  Score=106.89  Aligned_cols=111  Identities=20%  Similarity=0.353  Sum_probs=95.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.....+...    ....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence            46789999999999999999999999999988999999999999876543211    11245666             56


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCC-CCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-~~~liGvis~~Dil~  353 (358)
                      .+++.++.+++++.++++.|...+.+++||+| + .|+++|++|..|+++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence            67889999999999999999999999999999 5 689999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.7e-13  Score=108.83  Aligned_cols=118  Identities=22%  Similarity=0.302  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++++++++.+|++.|.+++.+++||+++   +|   +++|+++..|+..+........      ...++.+.-    
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~----   65 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYNN------LDLTVGEAL----   65 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCcccc------ccCCHHHHH----
Confidence            6789999999999999999999999999964   45   8999999999998653221110      011111100    


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              111235557889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.2e-13  Score=109.78  Aligned_cols=116  Identities=16%  Similarity=0.292  Sum_probs=93.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cc----ccccccHHHHHhcCCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI----HLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l----~~~~~~v~~~l~~~~~~~~  299 (358)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++......... ..    .....++.+          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence            467899999999999999999999999999889999999999998742111000 00    001233444          


Q ss_pred             CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                         +|..++.++.+++++.++++.|..++.+++||+| ++|+++|++|..|++++
T Consensus        72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence               5566789999999999999999999999999999 47999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.54  E-value=1.7e-13  Score=107.33  Aligned_cols=111  Identities=17%  Similarity=0.306  Sum_probs=92.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|++....+.....   ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence            4678999999999999999999999999997 99999999999985333221111   0245666             56


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|..++.+++||++ ++|+++|+||..|++.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence            66788999999999999999999999999999 4799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.53  E-value=2.8e-13  Score=105.83  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..++++.++.+.|.+++.+.+||+|+ |+++|+++..|+...+......    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence            4678999999999999999999999999997 9999999999998754332211    1245666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..+++++++++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            56789999999999999999999999999999 4 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2e-13  Score=110.38  Aligned_cols=115  Identities=17%  Similarity=0.304  Sum_probs=93.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc-------c---------ccccHH
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------L---------DEMNIH  288 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~-------~---------~~~~v~  288 (358)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+.............       .         ...++.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            467899999999999999999999999999999999999999998865432110000       0         001233


Q ss_pred             HHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       289 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      +             +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|..|++++
T Consensus        82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            3             6667889999999999999999999999999999 5 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.53  E-value=8.2e-14  Score=139.21  Aligned_cols=284  Identities=12%  Similarity=0.148  Sum_probs=174.3

Q ss_pred             CcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhh
Q 018309           27 HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  106 (358)
Q Consensus        27 ~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~  106 (358)
                      .++.|++-     ++++++++++|+.+|++.|.++++..+||+|.+ ++++|+++..|+...+..... .     +.+..
T Consensus        68 ~~V~dim~-----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~-~-----~~~~~  135 (546)
T PRK14869         68 PQVRDLEI-----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILD-P-----EILSK  135 (546)
T ss_pred             CcHHHhcC-----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcc-h-----hhhhh
Confidence            35667752     478999999999999999999999999999865 799999999999985543221 0     01111


Q ss_pred             cchHHHHHHHHhhccccccCC------C--------------CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecC
Q 018309          107 HTISAWKVGKLQLNLKRQMDG------N--------------GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHST  166 (358)
Q Consensus       107 ~~i~~~~~~~~~~~~~~~~d~------~--------------~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~  166 (358)
                      . ..++.++...++.......      .              +......++.+....   +.+..+.+.++++++|++..
T Consensus       136 ~-~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~  211 (546)
T PRK14869        136 S-PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGA  211 (546)
T ss_pred             c-CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCC
Confidence            0 0001111111110000000      0              001122344443333   33445677889999998542


Q ss_pred             CCCC------CcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHH
Q 018309          167 GPAG------SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSAL  239 (358)
Q Consensus       167 ~~~g------~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~  239 (358)
                      .-..      ....+.++.|..|.......-.         ..            ..++++|+ +++.++++++++.++.
T Consensus       212 ~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~------------~~V~~iM~~~~~~~~~~~~~~~~~~  270 (546)
T PRK14869        212 PVSEDVLELAKENGVTVISTPYDTFTTARLIN---------QS------------IPVSYIMTTEDLVTFSKDDYLEDVK  270 (546)
T ss_pred             CCCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------cC------------CCHHHhccCCCcEEECCCCcHHHHH
Confidence            2100      0013777888887766433211         11            24566698 8899999999999999


Q ss_pred             HHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cc-ccccc--cHHH-----HHhcCCCCCCCcccCCccceE
Q 018309          240 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-HLDEM--NIHQ-----ALQLGQDANPSLGFNGQRCQM  310 (358)
Q Consensus       240 ~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l-~~~~~--~v~~-----~l~~~~~~~~~~~~~~~~~~~  310 (358)
                      +.|.+++++.+||+|++|+++|++|.+|++........- +- ...+.  -+.+     ...+..  ..  +++...++.
T Consensus       271 ~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~--~~--~~~~~~pi~  346 (546)
T PRK14869        271 EVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHR--LG--DIQTSNPIF  346 (546)
T ss_pred             HHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCc--cC--CCCCCCCcE
Confidence            999999999999999999999999999999854421100 00 00000  0000     000100  00  145445444


Q ss_pred             E---cCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          311 C---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       311 v---~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      +   +...+...+.+.|.+.++...|++..  ..+.|++|-++.++
T Consensus       347 ~~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~f~  390 (546)
T PRK14869        347 FRNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLLFK  390 (546)
T ss_pred             EEeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCcc
Confidence            4   44777888999999999888777773  56888888887765

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.53  E-value=1.3e-13  Score=126.18  Aligned_cols=120  Identities=13%  Similarity=0.361  Sum_probs=101.2

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  ++.++..++++.++++.+.+++.+++||++++ ++++|+++.+|++.....+..      ..++.+    
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~----  137 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK----  137 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence            45666887  68999999999999999999999999999876 799999999999875432111      123455    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|. ++.++++++++.++++.|.+++.|.++|+| +.|.++|+||+.||++.++|
T Consensus       138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence                     443 456899999999999999999999999999 57899999999999999876

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.53  E-value=3.1e-13  Score=105.55  Aligned_cols=108  Identities=16%  Similarity=0.359  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+......+..      ..++.+             +
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence            46789999999999999999999999999988 999999999999986643211      123443             2


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      + .++.++.+++++.++++.|..++.+++||+| ++|+++|+||+.|+++
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE  110 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence            3 3578899999999999999999999999999 5799999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.53  E-value=2.4e-13  Score=106.65  Aligned_cols=111  Identities=15%  Similarity=0.302  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      +++++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++...+.+...    ....++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence            46678999999999999998889999999988999999999999987653221    11235666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++++++++.++++.|..++.+++||+| ++|+++|+|+..||++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~  113 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4799999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.53  E-value=3.6e-13  Score=104.72  Aligned_cols=106  Identities=19%  Similarity=0.306  Sum_probs=92.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+......         ..++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence            46788999999999999999999999999988999999999999875421         134555             45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ...+.++++++++.++++.|.+.+.+++||+| ++|+++|++|..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence            56788999999999999999999999999999 4799999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.52  E-value=1.5e-13  Score=111.59  Aligned_cols=115  Identities=23%  Similarity=0.374  Sum_probs=93.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc------ccc------------cccccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY------AQI------------HLDEMN  286 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~------~~l------------~~~~~~  286 (358)
                      ++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|+.........      ...            .....+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            57789999999999999999999999999988999999999999875432210      000            000122


Q ss_pred             HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       287 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      +.+             +|..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||..|++++
T Consensus        83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            333             5667889999999999999999999999999999  3899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.52  E-value=1.5e-13  Score=133.35  Aligned_cols=115  Identities=15%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      +.+.|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+....      .    ..++.+        
T Consensus        91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~------~----~~~V~d--------  152 (479)
T PRK07807         91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD------R----FTQVRD--------  152 (479)
T ss_pred             cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc------c----CCCHHH--------
Confidence            4456888999999999999999999999999999999999999999999985420      0    235666        


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                           +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++...
T Consensus       153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                 7778999999999999999999999999999999 4799999999999998653

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.52  E-value=4.5e-13  Score=104.49  Aligned_cols=108  Identities=24%  Similarity=0.373  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++...++..      ..++.+             ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence            4678999999999999999999999999998 999999999999986543211      135565             44


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence            56789999999999999999999999999999 4789999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.5e-13  Score=105.34  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=84.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      .++++++++++.+|.+.|.+++.+++||+|+  ++|   +++|++|..|+.+.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence            4688999999999999999999999999964  235   7999999999977210                         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~  270 (358)
                                 +.++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                       5689999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.52  E-value=5.3e-13  Score=104.34  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      +++++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+.....++...    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence            3668899999999999999999999999998 8999999999998765432211    1345666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++++++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence            56789999999999999999999999999999 3 899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=4.1e-13  Score=105.68  Aligned_cols=111  Identities=18%  Similarity=0.313  Sum_probs=90.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|++.....+..    ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence            4667899999999999998888 66777777 5899999999999875543211    11245666             5


Q ss_pred             CCccceEEcCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          304 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       304 ~~~~~~~v~~~--~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      |..++.++.++  +++.++++.|.+++.+++||+| ++|+++|+||+.|++++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV  115 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence            55678888887  7899999999999999999999 47999999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.51  E-value=5.9e-13  Score=103.89  Aligned_cols=107  Identities=23%  Similarity=0.457  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..++++.++.+.|.+.+.+++||+|+ |+++|+++..|+....... +     ...++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~-----~~~~~~~-------------~~   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-L-----GHAPVKD-------------YM   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-c-----ccCcHHH-------------Hh
Confidence            5778999999999999999999999999998 9999999999998765322 1     1456676             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|.+++.+++||++  +|+++|+||..|+++
T Consensus        63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            56789999999999999999999999999999  389999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.4e-13  Score=109.12  Aligned_cols=112  Identities=21%  Similarity=0.401  Sum_probs=88.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH-----hcccccccccccccHHHHHhcCCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-----KDKAYAQIHLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~-----~~~~~~~l~~~~~~v~~~l~~~~~~~~  299 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+....     .++.   ..+.+.++.+          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~----------   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVAD----------   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHH----------
Confidence            467899999999999999999999999999889999999999998621     1110   0111345666          


Q ss_pred             CcccCCccceEE------cCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 018309          300 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR  353 (358)
Q Consensus       300 ~~~~~~~~~~~v------~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~  353 (358)
                         +|.++...+      .+++++.++++.|.+++.+++||+| ++ |+++|+||+.|+++
T Consensus        69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~  125 (126)
T cd04640          69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence               454444333      3689999999999999999999999 45 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.51  E-value=5.9e-13  Score=103.83  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+...++..     ...++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence            4678999999999999999999999999987 999999999999986643221     1356666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++++++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence            56789999999999999999999999999999 4799999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.51  E-value=4.9e-13  Score=104.32  Aligned_cols=110  Identities=24%  Similarity=0.358  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+..........     ..++.+             .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence            4678999999999999999999999999998 9999999999998755432110     123444             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      .+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  111 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence            67899999999999999999999999999999 47999999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.51  E-value=2.2e-13  Score=136.82  Aligned_cols=124  Identities=18%  Similarity=0.227  Sum_probs=105.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+.......    ..+.++.+       
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d-------  516 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD-------  516 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence            6778899899999999999999999999999999999999999999999999874432211    01235555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||+.|+++++.+
T Consensus       517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence                  6677889999999999999999999999999999422 589999999999998754

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.50  E-value=4.9e-13  Score=106.02  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc------cccccHHHHHhcCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN  298 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~------~~~~~v~~~l~~~~~~~  298 (358)
                      ++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+.............      ..+.++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4678999999999999999999999999997 9999999999998755322110000      00123333         


Q ss_pred             CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                          +|.+++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|+++.
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA  122 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence                6667899999999999999999999999999999 47999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=7.6e-13  Score=103.53  Aligned_cols=111  Identities=15%  Similarity=0.292  Sum_probs=90.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+...+...   .+.+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence            467889999999999999888888887775 5999999999999975543211   111345666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.++++.|..++..++||+| + |+++|+||..|++++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence            56788999999999999999999999999999 3 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4e-13  Score=106.66  Aligned_cols=114  Identities=16%  Similarity=0.346  Sum_probs=92.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~~  298 (358)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+...........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            4678999999999999999999999999997 99999999999987544211100      0011233444         


Q ss_pred             CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                          +|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                5667889999999999999999999999999999 5 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=6.8e-13  Score=103.92  Aligned_cols=111  Identities=23%  Similarity=0.380  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.+|.+.|.+.+.+++||+|+ |+++|+++..|++. ....+..    ....++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence            4678999999999999999999999999997 99999999999873 3322111    11223555             5


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      |...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  113 (113)
T cd04622          64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA  113 (113)
T ss_pred             ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence            666789999999999999999999999999999 46999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.50  E-value=3.6e-13  Score=105.52  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+.+...   ..      ....          
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~---~~------~~~~----------   56 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP---ND------YETL----------   56 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc---cc------cccc----------
Confidence            3577899999999999999999999999975   45   7999999999987210   00      0111          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              244557778889999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.3e-13  Score=106.04  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+++.+++||+|+  ++|   +++|+++..|+++++................+         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~---------   67 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIP---------   67 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhh---------
Confidence            6788999999999999999999999999975  225   79999999999987654321100000000000         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus        68 -~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          68 -LRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             -hhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence             0112346678899999999999999999999999999998899999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=5.7e-13  Score=104.89  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309          136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  215 (358)
Q Consensus       136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  215 (358)
                      +.++.+++++.+|++.|.+.+...+||+|+   +|   +++|+++..++.+++......      ...            
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------   58 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------   58 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence            567889999999999999999999999975   45   799999999998855321100      011            


Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ..+.++|..+++++.+++++.++++.|.+++..++||+|++|+++|++|.+|+++
T Consensus        59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            2344557778999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.48  E-value=1.4e-12  Score=130.29  Aligned_cols=195  Identities=18%  Similarity=0.170  Sum_probs=137.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc----
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV----  206 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v----  206 (358)
                      +|.++++++++++++.+|++.|.+++++.+||+|+   +|   +++|+++..|+.+++........  ......++    
T Consensus        73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~~--~~~~~~t~~~i~  144 (546)
T PRK14869         73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPEI--LSKSPTSLENII  144 (546)
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchhh--hhhcCCCHHHHH
Confidence            57789999999999999999999999999999975   45   89999999999987664332100  00001111    


Q ss_pred             ------------------cccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----------
Q 018309          207 ------------------SSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----------  256 (358)
Q Consensus       207 ------------------~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-----------  256 (358)
                                        ..+.++.- ...+.+.+.+.-+.+..+.  .++...+.+.+++++.|+...           
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                              11111110 0122234444423333332  344556788899999887532           


Q ss_pred             -CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEE
Q 018309          257 -DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVI  334 (358)
Q Consensus       257 -g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  334 (358)
                       +.+.++.|..|.......-.      ...++.+             +|. +++.++++++++.++.+.|.+++.+++||
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~------~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PV  283 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLIN------QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPV  283 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhh------cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceEE
Confidence             35778888888777543211      1356676             787 78999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEehHHHHHHh
Q 018309          335 VEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       335 vd~~~~~liGvis~~Dil~~~  355 (358)
                      +| ++|+++|+||..|+++..
T Consensus       284 vd-~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        284 VD-EDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             Ec-CCCCEEEEEEHHHhhccc
Confidence            99 589999999999999753

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=9.4e-13  Score=104.72  Aligned_cols=115  Identities=15%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc-----ccccccHHHHHhcCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI-----HLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~~l-----~~~~~~v~~~l~~~~~~~  298 (358)
                      ++.++.+++++.++.+.|.+++++++||+|+ |+++|+++..|+...+..... ...     .....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678999999999999999999999999997 999999999999875432100 000     000112333         


Q ss_pred             CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                          +|.++++++.+++++.++++.|.+++..++||+| ++|+++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence                5667899999999999999999999999999999 47999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.47  E-value=7.2e-13  Score=127.07  Aligned_cols=118  Identities=12%  Similarity=0.251  Sum_probs=101.4

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|++  ++.+++.++++.++++.+.+++++++||.+++ ++++|+++.+|++......        ...+.+    
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~----  259 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS----  259 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence            56777986  68999999999999999999999999999864 6999999999998644311        223444    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               ++ +++.++++++++.++++.|.+++.|..+|+| +.|..+|+||..||++.++|
T Consensus       260 ---------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       260 ---------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ---------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                     33 3678999999999999999999999999999 58999999999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.47  E-value=3.2e-13  Score=107.87  Aligned_cols=117  Identities=23%  Similarity=0.442  Sum_probs=98.5

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      ..+|..|++.+.|++++.+|+++|.++|++.+||++.    +   +++|-+|.+++.+...+..           ..++.
T Consensus        68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~  129 (187)
T COG3620          68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRS  129 (187)
T ss_pred             hhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhh
Confidence            4589999999999999999999999999999999964    3   8999999999999665332           22222


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      +       ++.++|..+++++++++++.-+-.++..|+  ++.|+ ++|+++|+||+.|++++++
T Consensus       130 ~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         130 L-------RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             h-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence            2       567789999999999999988888877654  57777 6899999999999999765

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.47  E-value=8.6e-13  Score=129.42  Aligned_cols=173  Identities=18%  Similarity=0.250  Sum_probs=127.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..++++++++.++.++++.|.+++++++||+|+   .+   +++|+++.+|+....     .       ...      
T Consensus        92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------  147 (486)
T PRK05567         92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------  147 (486)
T ss_pred             cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------
Confidence            57789999999999999999999999999999974   45   899999999986410     0       112      


Q ss_pred             cccccccccccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 018309          211 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  289 (358)
Q Consensus       211 i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~  289 (358)
                            .+.++|. .+++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|++..............++.+..
T Consensus       148 ------~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a  221 (486)
T PRK05567        148 ------PVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA  221 (486)
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe
Confidence                  2344576 678999999999999999999999999999999999999999999985421100000000111111


Q ss_pred             HHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          290 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                                        .+..++  .-.++.+.|.+.+++.+ ++|..+|+..|+++..+.++.
T Consensus       222 ------------------ai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 ------------------AVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             ------------------ecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                              122223  22788889999999954 777445888887777666654

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.47  E-value=5.7e-13  Score=103.88  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=87.6

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          229 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       229 v~~~~~l~~a~~~m~~~~-----~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.++++..    .   .   +.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~---~~~v~~-------------~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---P---DTPVSD-------------I   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---C---cchHHH-------------H
Confidence            567889999999998877     4789999988999999999998751    1   0   345666             4


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                      +..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus        59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence            455789999999999999999999999999999 479999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.47  E-value=1.3e-12  Score=101.71  Aligned_cols=109  Identities=19%  Similarity=0.366  Sum_probs=89.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..|+.+...+.... .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence            4678999999999999999999999999997 9999999999999865432111 0   245565             45


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      .+++.++++++++.++.+.|.+ .. .+||++ ++|+++|+||..|++++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence            5678899999999999999988 33 478998 47999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=2.3e-12  Score=100.73  Aligned_cols=110  Identities=15%  Similarity=0.314  Sum_probs=91.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++..|++..+..+....   .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence            4678899999999999999999999999986 49999999999998543221111   1345666             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      .+++.++.+++++.++++.|.+.+.+.+||+|+  ++++|+||..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            567899999999999999999999999999994  49999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.47  E-value=1.5e-12  Score=102.49  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=89.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  301 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~  301 (358)
                      ++.++.+++++.++++.|.+++...+||+|+   +|+++|+++..|+..... .        ..++.+            
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence            4678899999999999999999999999997   799999999999875321 1        234566            


Q ss_pred             ccCCccceEEcC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          302 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       302 ~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                       +|..+..++..  ++++.++++.|..++.+++||+| ++|+++|+||..|+++
T Consensus        62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence             55556667766  99999999999999999999999 4799999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=7.9e-13  Score=104.72  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++++++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++.+........       ...          
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~----------   58 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGADL-------QKV----------   58 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCCc-------cCC----------
Confidence            6788999999999999999999999999975   45   799999999998854311100       011          


Q ss_pred             cccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~  270 (358)
                        .++++|..  ++.++.+++++.++++.|.+++++.+||+|++   |+++|++|.+|+.+
T Consensus        59 --~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          59 --PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             --CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence              23344653  68899999999999999999999999999987   79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.46  E-value=3.4e-12  Score=120.54  Aligned_cols=196  Identities=17%  Similarity=0.204  Sum_probs=146.9

Q ss_pred             eEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhc
Q 018309           41 QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  120 (358)
Q Consensus        41 ~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  120 (358)
                      ..+.+.+..++.+|...+.++++.++||.|++.+..++++|..-++..+.....   .+-...+-..++.+.        
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~---~~~~~~~l~~s~~dl--------  231 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGR---LLPLPSLLSKSLSDL--------  231 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhc---ccccHHHhhCCHHHh--------
Confidence            449999999999999999999999999999888899999999999987765432   111122222222221        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcc
Q 018309          121 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  200 (358)
Q Consensus       121 ~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~  200 (358)
                            ++  .....+..+..++++.+|++.|.+++++++||++.   .|   +.+|..+..|+...+....-..     
T Consensus       232 ------~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~~~-----  292 (381)
T KOG1764|consen  232 ------GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTYNN-----  292 (381)
T ss_pred             ------Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCccCc-----
Confidence                  11  13447889999999999999999999999999975   44   5699999999977554332111     


Q ss_pred             ccccc-ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          201 ILQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       201 ~~~~~-v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                       ...+ +++.     . .....-...++++.+++++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus       293 -~~~~~l~~~-----~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  293 -LDLSCLSEA-----L-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             -cchhHHHHH-----h-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence             1111 1111     0 001112235899999999999999999999999999999999999999999998665

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.46  E-value=9.5e-13  Score=102.49  Aligned_cols=106  Identities=20%  Similarity=0.387  Sum_probs=89.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..++++.++++.|.+++.+.+||+|++|+++|+++.+++.....         .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence            4678899999999999999999999999998899999999999864211         1345666             44


Q ss_pred             CccceEEcC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~-~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++..+.+ ++++.++++.|.+.+.+++||+| ++|+++|+||..|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            445566666 99999999999999999999999 4799999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2e-12  Score=101.70  Aligned_cols=112  Identities=16%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+++.+.+||+++  +.|   +++|+++..|+++++.......      ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~~------~~~----------   60 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRDP------DRV----------   60 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCCC------Ccc----------
Confidence            5788999999999999999999999999975  115   7999999999998664321100      011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|+++..|++.
T Consensus        61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          61 --NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             --CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence              234457778999999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.45  E-value=1.3e-12  Score=104.13  Aligned_cols=122  Identities=19%  Similarity=0.358  Sum_probs=95.7

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      +++.++.++.++.++++.|.+++++++||+++   .|   +++|+++..++.+++......  ......+       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence            46788999999999999999999999999964   35   899999999998765422110  0000000       011


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ....++++|..+++++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            122456668888999999999999999999999999999998999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.45  E-value=2e-12  Score=99.88  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=89.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence            467789999999999999999999999998 699999999999986321          234555             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++++++++.++++.|..++..++||+| + |+++|+||..|++.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            56789999999999999999999999999999 4 99999999999974

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.45  E-value=1.8e-12  Score=100.42  Aligned_cols=105  Identities=16%  Similarity=0.332  Sum_probs=90.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ |+++|+++..|++..    ..      +.++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~~------~~~~~~-------------~~   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----DP------DETVEE-------------IM   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----Cc------cccHHH-------------hC
Confidence            5778999999999999999888889999987 999999999999852    10      234566             55


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..|++++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~  107 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS  107 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence            56789999999999999999999999999999 47999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.45  E-value=2.2e-12  Score=102.23  Aligned_cols=115  Identities=20%  Similarity=0.322  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-c----ccccccHHHHHhcCCCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~-l----~~~~~~v~~~l~~~~~~~~  299 (358)
                      ++.++++++++.+|.+.|.+.+.+++||+|++|+++|+++..|+........... .    .....++.+          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence            4678899999999999999999999999999899999999999987543211000 0    011244555          


Q ss_pred             CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                         +|..++.++.+++++.++++.|.+++.+.+||+| + |+++|++|..|++++
T Consensus        72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~~  121 (121)
T cd04584          72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLRT  121 (121)
T ss_pred             ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhcC
Confidence               4556788999999999999999999999999999 4 899999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.45  E-value=4.9e-12  Score=122.80  Aligned_cols=158  Identities=13%  Similarity=0.157  Sum_probs=118.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..+++++++++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+...      .       ...      
T Consensus        94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~------~-------~~~------  148 (479)
T PRK07807         94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV------D-------RFT------  148 (479)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC------c-------cCC------
Confidence            67889999999999999999999999999999974   45   89999999998430      0       011      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                            .+.++|+.+++++++++++.+|++.|.++++..+||+|++|+++|+||.+||++........ +.-....+.. 
T Consensus       149 ------~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a-  220 (479)
T PRK07807        149 ------QVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA-  220 (479)
T ss_pred             ------CHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh-
Confidence                  24556888999999999999999999999999999999899999999999999865433110 1000112222 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR  341 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~  341 (358)
                                       ..  .......+.++.|.+.++.. .++|..+|.
T Consensus       221 -----------------av--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        221 -----------------AV--GINGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             -----------------hh--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                             11  22234667788888888876 467743444

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=4.1e-12  Score=98.51  Aligned_cols=111  Identities=23%  Similarity=0.433  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..++++.++++.|.+++.+.+||+|++++++|+++..|+...........    ...+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~-------------~~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGD-------------VM   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHH-------------Hh
Confidence            4677899999999999999999999999998899999999999998664322111    011333             44


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|...+.+.+||+| ++|+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  112 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILR  112 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=1.1e-12  Score=127.99  Aligned_cols=107  Identities=16%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  302 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~  302 (358)
                      ++++++++++.+|++.|.+++.+.+||+|+   +|+++|+||..|+....        ...+.++.+             
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~d-------------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKD-------------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHH-------------
Confidence            468999999999999999999999999996   68999999999986421        011467787             


Q ss_pred             cCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          303 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       303 ~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      +|++  +++++++++++.+|++.|.+++++++||+| ++|+++|+||+.|+++.
T Consensus       166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence            6654  789999999999999999999999999999 57999999999999885

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.43  E-value=3.2e-12  Score=98.82  Aligned_cols=100  Identities=15%  Similarity=0.254  Sum_probs=86.5

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCc
Q 018309          227 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ  306 (358)
Q Consensus       227 ~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~  306 (358)
                      +++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+....           ..++.+             +|..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~-------------~~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVD-------------YIVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhh-------------hhhc
Confidence            46899999999999999999999999998 9999999999997631           112333             4445


Q ss_pred             cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          307 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       307 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ++.++++++++.++++.|.+++..++||+| + |+++|++|..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            688999999999999999999999999999 3 89999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.1e-12  Score=99.88  Aligned_cols=109  Identities=19%  Similarity=0.401  Sum_probs=91.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+.+...+||+++   +|   +++|+++..++.+++.....         ..          
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~----------   56 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DA----------   56 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CC----------
Confidence            5678899999999999998888999999964   45   79999999999886542210         11          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+..
T Consensus        57 --~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          57 --PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             --cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.42  E-value=1.9e-12  Score=117.85  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=97.6

Q ss_pred             ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          216 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       216 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      .+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+..     .+.++.+     
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~-----  224 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD-----  224 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence            3677889888 8999999999999999999999999999999999999999999885432211     1356776     


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  347 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis  347 (358)
                              +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus       225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~  268 (268)
T TIGR00393       225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH  268 (268)
T ss_pred             --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence                    6777899999999999999999999999999999 4789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3.2e-12  Score=102.42  Aligned_cols=124  Identities=15%  Similarity=0.229  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      .++++++++++.+|++.|.++++..+||+|+   .|   +++|+++..|+.++.........    ....+...+.  ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~   69 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK   69 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence            4678999999999999999999999999975   35   79999999999886532211000    0000000000  00


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      .....+.+..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            01112346677899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.42  E-value=7.4e-12  Score=98.55  Aligned_cols=111  Identities=25%  Similarity=0.436  Sum_probs=94.4

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  301 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~  301 (358)
                      |...+.++.++.++.+|...|.++++..+||++. ++++|++|.+|+......+....     .++.+            
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKE------------   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence            4467899999999999999999999999999974 47999999999999765432211     13555            


Q ss_pred             ccCCccceEEcCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 018309          302 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF  352 (358)
Q Consensus       302 ~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~l~Vvd~~~~-~liGvis~~Dil  352 (358)
                       +|..+++++.+++++.++.+.|.. ++++++||++ +++ +++|++|.+|++
T Consensus        67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~  117 (117)
T COG0517          67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL  117 (117)
T ss_pred             -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence             677789999999999999999999 7999999999 465 999999999974

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.42  E-value=2.6e-12  Score=124.73  Aligned_cols=113  Identities=17%  Similarity=0.323  Sum_probs=98.6

Q ss_pred             ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       220 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +.|.+++.++.+++++.++++.|.+++++++||+|++   ++++|+++.+|+.....         .+.++.+       
T Consensus        84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d-------  147 (450)
T TIGR01302        84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE-------  147 (450)
T ss_pred             CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH-------
Confidence            3366678999999999999999999999999999987   79999999999975321         1356777       


Q ss_pred             CCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          297 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       297 ~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                            +|. .+++++++++++.++++.|.+++.+.+||+| ++|+++|+||+.||++.+
T Consensus       148 ------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 ------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             ------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                  565 4899999999999999999999999999999 589999999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=5.9e-12  Score=98.38  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=91.4

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.++++.|.+++++.+||+++   ++   +++|+++..++.+++.......      ..           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~-----------   58 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD-----------   58 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence            5678899999999999999999999999964   34   7999999999998664321110      01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence             1244557778899999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=4.6e-12  Score=96.67  Aligned_cols=94  Identities=13%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++..|+.+..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5778999999999999999999999999964   45   799999999997710                          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                                .+.++.+++++.++++.|.+++.+++||+|++|+++|++|.+|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1668899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.41  E-value=5.3e-12  Score=97.67  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.+|++.|.+++.+.+||+|+   +|   +++|+++..++.+..              ..+         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~--------------~~~---------   52 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARAS--------------GGC---------   52 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhc--------------ccc---------
Confidence            5678899999999999999999999999964   45   799999999998721              011         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         ++++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++.+|++.
T Consensus        53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               23346667788999999999999999999999999998899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=1.2e-12  Score=104.88  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++..++++.+......       ...          
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~----------   59 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSD----------   59 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCC----------
Confidence            6788999999999999999999999999965   35   799999999998755432111       112          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                        .++++|.+++.++.+++++.++.+++.         +.+...+||+|++|+++|++|.+|++..
T Consensus        60 --~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          60 --PVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --cHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence              355669999999999999999999653         3367888999988999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6.7e-12  Score=103.07  Aligned_cols=126  Identities=19%  Similarity=0.304  Sum_probs=92.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc------ccccccHHHHHhc----
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL----  293 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~~l------~~~~~~v~~~l~~----  293 (358)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ..+      .....++.+++..    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            4678999999999999999999999999997 999999999999886543221 000      0000111110000    


Q ss_pred             ---CCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          294 ---GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       294 ---~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                         ...+..+. ++|..++.++.+++++.++++.|.+.+.+++||++ + |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence               00000111 15667899999999999999999999999999999 4 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=1.9e-11  Score=118.57  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=116.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      .|.++++++.+++++.+|++.|.+++++.+||+|+    +   +++|++|.+|+...      .       ...      
T Consensus        93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~------  146 (475)
T TIGR01303        93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFT------  146 (475)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCC------
Confidence            56778899999999999999999999999999863    4   79999999998430      0       011      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                            .+.++|+.+++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++........ +.-..+.+.. 
T Consensus       147 ------~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~-d~~grl~Vga-  218 (475)
T TIGR01303       147 ------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPAT-DAAGRLRIGA-  218 (475)
T ss_pred             ------CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchh-hhccCceehh-
Confidence                  24556888999999999999999999999999999999999999999999999865433110 0000111111 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  342 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~l  342 (358)
                                       .  +.......+.++.|.+.++..+ ++|..+|+.
T Consensus       219 -----------------a--v~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~  250 (475)
T TIGR01303       219 -----------------A--VGINGDVGGKAKALLDAGVDVL-VIDTAHGHQ  250 (475)
T ss_pred             -----------------e--eeeCccHHHHHHHHHHhCCCEE-EEeCCCCCc
Confidence                             1  2233455567777777777654 556434554

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.41  E-value=3.1e-12  Score=125.53  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=100.5

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      +.+.|..++.++.+++++.++++.|.+++++++||+|++++++|+++.+|+.....      .   ..++.+        
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d--------  151 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE--------  151 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence            44557788999999999999999999999999999999999999999999964211      1   345666        


Q ss_pred             CCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          298 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       298 ~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                           +|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus       152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                 555 5789999999999999999999999999999 589999999999999865

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=2.9e-12  Score=124.24  Aligned_cols=113  Identities=12%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      .+.|.++++++.+++++.++++.|.+++++.+||+|+ ++++|++|.+|+...   .    .   ..++.+         
T Consensus        91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~---~----~---~~~V~d---------  150 (475)
T TIGR01303        91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV---D----R---FTQVRD---------  150 (475)
T ss_pred             hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC---C----C---CCCHHH---------
Confidence            3457778999999999999999999999999999984 799999999998431   0    1   245676         


Q ss_pred             CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                          +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||+++..
T Consensus       151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI  203 (475)
T ss_pred             ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence                7778999999999999999999999999999999 4799999999999998653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.41  E-value=3.8e-12  Score=124.49  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=97.4

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      |.++++++.+++++.++++.|.+++++.+||+|+   +|+++|++|.+|+....         ..+.++.+         
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~e---------  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSE---------  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHH---------
Confidence            5567899999999999999999999999999987   48999999999997532         11467777         


Q ss_pred             CCcccCCcc--ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          299 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       299 ~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                          +|.++  ++++.+++++.+|++.|.+++.+++||+| ++++++|+||+.||++.+
T Consensus       168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence                55544  78999999999999999999999999999 479999999999999876

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.41  E-value=6e-12  Score=98.67  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=90.1

Q ss_pred             ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309          136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  215 (358)
Q Consensus       136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  215 (358)
                      .++++++.++.+|++.|.+++.+.+||+++   +|   +++|+++..|+.+.+.....        ...           
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~-----------   58 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD-----------   58 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence            567899999999999999999999999965   45   79999999999875432110        111           


Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       .+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             234447777889999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.41  E-value=6.8e-12  Score=97.75  Aligned_cols=108  Identities=21%  Similarity=0.430  Sum_probs=90.8

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++++++.++.++.+|++.|.+++...+||+++   +|   +++|+++..++++.+....           .+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~--------   56 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS--------   56 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence            36788999999999999999999999999964   45   8999999999987443210           11        


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                          +.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+.+
T Consensus        57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                23346667889999999999999999999999999999999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.40  E-value=1.4e-12  Score=116.96  Aligned_cols=116  Identities=17%  Similarity=0.254  Sum_probs=104.0

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      .|.++|.  ....++.+++++.+..++-.+.+.+++||+|...+++|++|.+|+.....          +.++..     
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK-----  253 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK-----  253 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence            4566677  56888999999999999999999999999999999999999999987321          456666     


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                              +|+++++++.+.+++..+.++|+-.++.-+||+| ++.+++|+||++|+++++-
T Consensus       254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHHH
Confidence                    8889999999999999999999999999999999 5899999999999999874

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.40  E-value=3.9e-12  Score=99.95  Aligned_cols=109  Identities=14%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++.++++++++.+|++.|.+++ .+.+||+|+   +|   +++|+++..|+++......         ...+        
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~--------   58 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTT--------   58 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccc--------
Confidence            5678899999999999987765 889999964   45   7999999999988543211         1112        


Q ss_pred             ccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                          +.++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        59 ----v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          59 ----VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ----hhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                2233542  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.40  E-value=7.3e-12  Score=99.04  Aligned_cols=113  Identities=18%  Similarity=0.283  Sum_probs=89.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+....... +......+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~v~~-------------~   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP-YGRALYGKKPVSE-------------V   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch-hhHHHHcCCcHHH-------------h
Confidence            4567899999999999998877 899999998 9999999999998754321 1000011344555             6


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~---~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      |..++.++.+++++.++++.|.+++.+   ..+|++ ++|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence            667899999999999999999999864   346888 4799999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.39  E-value=8e-12  Score=98.28  Aligned_cols=111  Identities=18%  Similarity=0.367  Sum_probs=91.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.+++++.++++.|.+.+.+.+||+|+   .|   +++|+++..|+.+.+......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   58 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS----------   58 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence            4667889999999999999999999999965   45   799999999998855321100       011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~--g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|++  |+++|++|.+|++.
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              1334477788999999999999999999999999999987  89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.39  E-value=3.4e-12  Score=124.22  Aligned_cols=117  Identities=15%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      .+++++|++++.+++++.++.++++.|.+     ++...++|+|++++++|+++.+|++..   .       .+.++.+ 
T Consensus       131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~-------~~~~v~~-  199 (449)
T TIGR00400       131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K-------PEEILSS-  199 (449)
T ss_pred             chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C-------CCCcHHH-
Confidence            35677799999999999999999999975     567789999999999999999998752   0       1345676 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                  +|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus       200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        6667789999999999999999999999999999 5899999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1e-11  Score=97.03  Aligned_cols=110  Identities=19%  Similarity=0.361  Sum_probs=91.8

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.+|++.|.+.+.+.+||+++   +|   +++|+++..++++++.....        ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~----------   57 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT----------   57 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence            5678899999999999999999999999965   35   79999999999886543211        111          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus        58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence              233447778999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.38  E-value=3.5e-12  Score=119.22  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=98.0

Q ss_pred             CCCCCCC--ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~~--~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      +++|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+++..|+.+++.....        ..   
T Consensus       200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~~--------~~---  262 (321)
T PRK11543        200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGGA--------LT---  262 (321)
T ss_pred             HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCCC--------cC---
Confidence            3467776  999999999999999999999999999975   45   89999999999875532110        11   


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                               ..+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus       263 ---------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~  317 (321)
T PRK11543        263 ---------TPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ  317 (321)
T ss_pred             ---------CcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence                     1345568888999999999999999999999999999998899999999999986

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.38  E-value=8.3e-12  Score=97.10  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=89.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++....             ...+         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~---------   54 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT---------   54 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence            5788999999999999999999999999964   45   899999999986510             0112         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         +.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus        55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence               33447677889999999999999999999999999998999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.38  E-value=8.1e-12  Score=96.94  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=87.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  301 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~  301 (358)
                      ....+.+++++.++.+.|.+++...+||+|+   +|+++|+++.+|+.....+                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            3567899999999999999999999999998   6999999999999874421                           


Q ss_pred             ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                       +|.+++.++++++++.++++.|.+++.+++||++  +|+++|+||+.|++++
T Consensus        56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence             1234678999999999999999999999999997  4899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.38  E-value=1.1e-11  Score=97.18  Aligned_cols=111  Identities=19%  Similarity=0.351  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.++++.|.+.+.+.+||+++   +|   +++|+++..++.+.+......       ...          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~----------   59 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL----------   59 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC----------
Confidence            5667899999999999998888899999975   35   799999999999866532211       011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus        60 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          60 --PVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             --CHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence              244557778889999999999999999999999999998899999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.4e-12  Score=99.29  Aligned_cols=123  Identities=21%  Similarity=0.345  Sum_probs=94.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.++.++.+|++.|.+++.+.+||+++  ++|   +++|+++..++.+++...........    ...    ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~----~~~----~~~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKT----GNG----LEAI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccc----ccc----chhh
Confidence            5678899999999999999999999999965  225   89999999999987753321100000    000    0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..+++++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            12345567778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=8.6e-12  Score=98.08  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=90.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      .++++++++++.+|++.|.+++++.+||+|+   +|   +++|+++..++.+++.......     ..     .+    .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~   61 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V   61 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence            4678999999999999999999999999964   45   7999999999998764322110     00     00    0


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..++.++.+++++.++++.|.+++  .+||+|++|+++|++|.+|++.
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            12344557778999999999999999998865  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.8e-12  Score=98.75  Aligned_cols=120  Identities=20%  Similarity=0.415  Sum_probs=94.1

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.++++.|.+.+++.+||+++   +|   +++|+++..++.+++........      ......    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------~~~~~~----~~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG------EESLTK----ER   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc------cccccc----cc
Confidence            5678899999999999999999999999964   35   79999999999986643221100      000000    01


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            12345567778999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.37  E-value=6.2e-12  Score=120.20  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=123.7

Q ss_pred             EeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC--
Q 018309           78 GVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN--  155 (358)
Q Consensus        78 Gilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~--  155 (358)
                      .-++..|.++++..+.   .+...+.+....-.....+....+  |.++.+|+.|...++++.++.|+.+|+..+++.  
T Consensus        89 e~m~~Dd~~~ll~elp---~~~~~~lL~~l~~~~r~~v~~~l~--y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~  163 (451)
T COG2239          89 EELDIDDAADLLDELP---DEVRDELLSLLDPEERARVRQLLS--YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAE  163 (451)
T ss_pred             HhcCcHHHHHHHHhCC---HHHHHHHHHhCCHHHHHHHHHhcC--CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcc
Confidence            3345555555554432   233334444444444444444444  999999999999999999999999999999854  


Q ss_pred             ---CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCC
Q 018309          156 ---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT  232 (358)
Q Consensus       156 ---~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~  232 (358)
                         ..+.+.|+|.   ++   +++|+++.++++.             .....            .+.++|.+.++++.++
T Consensus       164 ~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~-------------a~~~~------------~i~~im~~~~~~V~~~  212 (451)
T COG2239         164 DAETIYYLYVVDE---KG---KLLGVVSLRDLLT-------------AEPDE------------LLKDLMEDDVVSVLAD  212 (451)
T ss_pred             cccccceEEEECC---cc---ceEEEeeHHHHhc-------------CCcHh------------HHHHHhcccceeeccc
Confidence               4688899976   44   8999999999876             11122            3445588889999999


Q ss_pred             CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          233 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       233 ~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                      +..+++.+.+.+++.-.+||||++++++|++|..|++..+.+.
T Consensus       213 ~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         213 DDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             CCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999977643

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.3e-11  Score=96.68  Aligned_cols=111  Identities=14%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.+++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..++.+.......       +...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~~-------~~~~----------   58 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESEE-------LKDA----------   58 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhhh-------hcCC----------
Confidence            3567889999999999999999999999975   35   79999999999874332110       0111          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus        59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.3e-11  Score=97.00  Aligned_cols=110  Identities=19%  Similarity=0.314  Sum_probs=86.9

Q ss_pred             CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++.+++++.++.+|++.|.+++ ...+||+++    |   +++|+++..|+++++......       ...         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------   58 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----G---RLLGIFTERDIVRLTAIGKDL-------SDL---------   58 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----C---cEEEEEeHHHHHHHHhcCCCc-------ccc---------
Confidence            4567899999999999998888 566777742    4   799999999998855421100       011         


Q ss_pred             ccccccccCCCCceEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         .+.++|..++.++.++  +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence               2334477778888877  68999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.9e-11  Score=94.59  Aligned_cols=104  Identities=19%  Similarity=0.366  Sum_probs=88.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  304 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~  304 (358)
                      ++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence            4678889999999999999999999999998899999999999975210          123444             44


Q ss_pred             CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      ..++.++.+++++.++++.|.+++.+.+||+| + |+++|++|..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence            55788999999999999999999999999999 3 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.36  E-value=1.5e-11  Score=97.33  Aligned_cols=120  Identities=19%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.+|++.|.+.+...+||+|+    |   +++|+++..++.++.........         ..+......
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            5678899999999999999999999999963    4   79999999999986543211100         000000001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            12355667788999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.4e-11  Score=100.25  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=94.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccC-CCCcccc---cccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ  210 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~-~~~~~~~---~~~v~~l~  210 (358)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++++++....... +.....+   ..+.....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            4677899999999999999999999999965   45   8999999999998664221110 0000000   00000000


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      .......++++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            011122466778888999999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.36  E-value=5.8e-12  Score=117.98  Aligned_cols=116  Identities=17%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      +++|.+  +++++++++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+.+.+....       .+..   
T Consensus       205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~---  268 (326)
T PRK10892        205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQ---  268 (326)
T ss_pred             HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Cccc---
Confidence            456776  8999999999999999999988888888864   45   8999999999987432110       0001   


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                               ..++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|++|+++
T Consensus       269 ---------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~  322 (326)
T PRK10892        269 ---------ASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLR  322 (326)
T ss_pred             ---------CCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHh
Confidence                     235566988999999999999999999999999999997 689999999999987

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.36  E-value=1.5e-11  Score=95.95  Aligned_cols=109  Identities=20%  Similarity=0.383  Sum_probs=90.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.+|++.|.+++.+++||+++    |   +++|+++..++.+++......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~-------~~~----------   57 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEGLD-------PDT----------   57 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccCCC-------ccC----------
Confidence            5678899999999999999989999999963    4   799999999998754321100       011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..+++++.+++++.++++.|.+++.+++||+++ |+++|++|.+|+++
T Consensus        58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence              234457778999999999999999999999999999987 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.2e-11  Score=99.93  Aligned_cols=125  Identities=18%  Similarity=0.356  Sum_probs=93.9

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC--C-cccc--ccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS--S-LPIL--QQPVSSI  209 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~--~-~~~~--~~~v~~l  209 (358)
                      ++.++.+++++.+|++.|.+++++++||+|+   +|   +++|+++..++.+++.........  . ....  +.....+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            5678999999999999999999999999975   35   799999999999877533211000  0 0000  0000000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                          ....+.++|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|++|..|++.
T Consensus        76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                011355667788999999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.36  E-value=1.7e-11  Score=95.14  Aligned_cols=106  Identities=20%  Similarity=0.336  Sum_probs=89.4

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.++.++.++++.|.+++...+||+++   +|   +++|+++..|+.+....            ..+         
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~---------   55 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS---------   55 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence            5677899999999999999999999999965   35   79999999999874310            112         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         +.++|...+.++.+++++.++++.|.+++.+++||+|++|+++|++|.+|++.
T Consensus        56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence               23346667889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.35  E-value=2.2e-11  Score=94.83  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=91.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..++++.++.+|++.|.+++.+.+||+++    |   +++|+++..++.++......        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   55 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ-----------   55 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence            5678899999999999999888999999963    4   79999999999886532110        01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..++++|..+++++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus        56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence             1244457778899999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.2e-11  Score=96.88  Aligned_cols=112  Identities=23%  Similarity=0.300  Sum_probs=91.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.+|++.|.+++.+.+||+++   +|   +++|+++..++.+.+.......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~-----------   59 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV-----------   59 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence            5678899999999999999888899999965   45   7999999999998664322110     011           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence             1244457777889999999999999999999999999987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.35  E-value=1.4e-11  Score=120.69  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=98.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+...+..+....    +.++.+       
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~-------  404 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK-------  404 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence            577889999999999999999999999999999999998899999999999998554321111    245666       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                            +|.+++.++++++++.++++.|.+++   .++|++ +|+++|+||+.||+++|
T Consensus       405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence                  66677889999999999999998764   355652 58999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=2.5e-11  Score=94.52  Aligned_cols=108  Identities=22%  Similarity=0.423  Sum_probs=90.0

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++++++++.+|++.|.+++++++||+++    |   +++|+++..+++++......         ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~----------   55 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA----------   55 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence            5778999999999999999999999999963    4   79999999999885432110         01          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence              233446678899999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.6e-11  Score=95.91  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..++++.++.++++.|.+++.+++||+++   .|   +++|+++..++..+.....        ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~----------   57 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK----------   57 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence            5678899999999999999999999999975   45   7999999999987432110        0011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus        58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence              234457778899999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.35  E-value=1e-11  Score=121.36  Aligned_cols=112  Identities=20%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       221 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      .|..+++++.+++++.+++++|.+++++.+||+|++   |+++|+++.+|+....   .      .+.++.+        
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~------~~~~V~d--------  163 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D------KSTPVSE--------  163 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c------CCCCHHH--------
Confidence            355678899999999999999999999999999873   8999999999997421   0      1356777        


Q ss_pred             CCCcccCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          298 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       298 ~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                           +|.+  +++++++++++.+|++.|.+++.+.+||+| ++++++|+||+.||++..
T Consensus       164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR  217 (495)
T ss_pred             -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence                 5655  789999999999999999999999999999 589999999999999764

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.34  E-value=2.4e-11  Score=95.03  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=90.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.++++.|.+++.+.+||+++    |   +++|+++..++++.+......     . ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~----------   58 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-EST----------   58 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcC----------
Confidence            5678899999999999999889999999963    4   799999999998644321100     0 012          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++..++||++++|+++|++|.+|++.
T Consensus        59 --~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          59 --LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             --CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence              234447778889999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.34  E-value=2.2e-11  Score=94.95  Aligned_cols=109  Identities=16%  Similarity=0.238  Sum_probs=88.7

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++++.++.++.+|++.|.+++...+||+++  +.|   +++|+++..++.++......         ..++        
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~--------   59 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDL--------   59 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCH--------
Confidence            4678999999999999999999999999965  115   79999999999986532110         0111        


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                          .+++ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        60 ----~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          60 ----RDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             ----HHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                1223 35788999999999999999999999999998899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.34  E-value=2.2e-11  Score=95.25  Aligned_cols=111  Identities=25%  Similarity=0.366  Sum_probs=91.8

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++++.+++++.++++.|.+.+.+.+||+++   .|   +++|+++..++.+++.....        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   56 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD-----------   56 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence            5678999999999999999999999999975   35   79999999999886532110        01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~  270 (358)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|++.
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            01344557778999999999999999999999999999987 799999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.33  E-value=1.4e-11  Score=99.87  Aligned_cols=128  Identities=19%  Similarity=0.327  Sum_probs=93.9

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc--ccc--c
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP--VSS--I  209 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~--v~~--l  209 (358)
                      .++.++.++.++.+|++.|.+++.+++||+|+   +|   +++|+++..++.++....+....  ..+....  ...  .
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~   73 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRR--ARWLDLLAGAEELAA   73 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchh--hhHHHHhcchHHHHH
Confidence            36788999999999999999999999999964   45   79999999999875533211000  0000000  000  0


Q ss_pred             cc-ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          210 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       210 ~i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      .. ......+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|+.|+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            00 0011235566878899999999999999999999999999999 899999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.4e-11  Score=93.43  Aligned_cols=110  Identities=17%  Similarity=0.352  Sum_probs=88.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      .+.++.+++++.+|++.|.+++.+.++|.+    +|   +++|+++..++.+++.......      ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~~------~~~----------   58 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAGV------LDT----------   58 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCch------hcC----------
Confidence            467889999999999999888887777764    25   7999999999998664321110      011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus        59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence              24445777788999999999999999999999999998 599999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.32  E-value=3.1e-11  Score=94.83  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=86.7

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+++...+||+|+...+|   +++|+++..++...-     .       ...          
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~----------   57 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SET----------   57 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCC----------
Confidence            467888999999999999988999999996421135   899999999986410     0       011          


Q ss_pred             cccccccCCCCceEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|.....++..  ++++.++++.|.+++...+||+|++|+++|++|.+|++.
T Consensus        58 --~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          58 --PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             --CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence              133446666667755  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.32  E-value=4.7e-11  Score=93.93  Aligned_cols=111  Identities=26%  Similarity=0.484  Sum_probs=94.8

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      +...++++.++.++.+|+..|.++++.++|+.+.    +   +++|++|.+|+.+++........               
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~---------------   62 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL---------------   62 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence            4578899999999999999999999999999964    2   69999999999997764432210               


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 018309          212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  269 (358)
Q Consensus       212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~vpVvd~~g-~liGiis~~dl~  269 (358)
                           .+.++|..++.++.+++++.++.+.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus        63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                 2445577789999999999999999999 7999999999886 999999999973

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.6e-11  Score=96.30  Aligned_cols=120  Identities=22%  Similarity=0.402  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.++++.|.+++.+.+||+|+   +|   +++|+++..++++.........       .....   ....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~-------~~~~~---~~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVE-------DQQRT---QTKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhcccccccc-------chhhh---hhhc
Confidence            5678999999999999999999999999964   45   8999999999987421110000       00000   0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            12345567778899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.31  E-value=5.5e-11  Score=92.62  Aligned_cols=107  Identities=19%  Similarity=0.399  Sum_probs=89.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.+|.+.|.+++..++||+|+    |   +++|+++..++.+.+....         ...          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~----------   56 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHA----------   56 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccC----------
Confidence            6788999999999999999888999999963    4   7999999999987542110         112          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|..|++.
T Consensus        57 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          57 --PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             --cHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence              23344777889999999999999999999999999998 799999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.2e-11  Score=96.61  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=86.1

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHh-hcccCCCCccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR-HFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~-~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   .|   +++|+++..|+.+.... ......  ......         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~---------   64 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG--ISRSEL---------   64 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC--CCchhe---------
Confidence            4678999999999999999899999999975   45   79999999999862110 000000  000111         


Q ss_pred             ccccccccCCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~  270 (358)
                         .++++|.+++..+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        65 ---~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          65 ---TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence               2444576554333      368899999999999999999999987 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.30  E-value=5.3e-11  Score=91.76  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=86.6

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.+++++.++++.|.+++.+.+||+|+    |   +++|+++..++.+..             ...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~----------   51 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNR----------   51 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccC----------
Confidence            5677899999999999999899999999953    4   799999999997610             011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  269 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~  269 (358)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus        52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence              133447778899999999999999999999999999987 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=8.2e-11  Score=91.88  Aligned_cols=110  Identities=21%  Similarity=0.396  Sum_probs=89.4

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.++++.|.+.+.+.+||+++    +   +++|+++..++.+++.......      ...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~~------~~~----------   58 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLKP------REV----------   58 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCCc------ccC----------
Confidence            5678899999999999999989999999974    3   6999999999998654221000      111          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|++.
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence              2344577788899999999999999999999999999865 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=5.7e-11  Score=95.30  Aligned_cols=124  Identities=15%  Similarity=0.269  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.++.++.+|++.|.+.+.+.+||+++   .|   +++|+++..++..++........     ........ ....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence            4678899999999999999999999999975   35   79999999999876533211000     00000000 0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd--~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..+++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|++.
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1234566888899999999999999999999999999984  4699999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=6.7e-11  Score=93.95  Aligned_cols=120  Identities=23%  Similarity=0.321  Sum_probs=94.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.+++++.++.+|++.|.+++++++||+|+    |   +++|+++..++.+.+........       ....+.  ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence            5678999999999999999999999999963    4   79999999999886654322100       000000  011


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..+++++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            12355667788999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=7.5e-11  Score=92.20  Aligned_cols=110  Identities=20%  Similarity=0.376  Sum_probs=89.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHH-HHHhhcccCCCCccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~-~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++.++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..+++. .+.... .       ...         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~-~-------~~~---------   57 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGR-D-------PDT---------   57 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccC-C-------ccc---------
Confidence            5678999999999999999999999999963    4   7999999999873 221110 0       000         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        ..+.++|...+.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++
T Consensus        58 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 --TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             --CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              1244557778889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.7e-11  Score=94.17  Aligned_cols=119  Identities=19%  Similarity=0.426  Sum_probs=92.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.+++++.++++.|.+++.+.+||+++    |   +++|+++..++.+.+........  ......+...      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence            5678999999999999999999999999963    5   89999999999886543221100  0000011111      


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|++|.+|++.
T Consensus        67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             1344557778999999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.28  E-value=4.8e-11  Score=92.74  Aligned_cols=106  Identities=19%  Similarity=0.312  Sum_probs=86.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..+.++.++.++++.|.+++...+||+|+   .|   +++|+++..++.+..     .       ...          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~----------   54 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDK----------   54 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCC----------
Confidence            5678899999999999999999999999965   35   899999999885410     0       111          


Q ss_pred             cccccccCCCCceEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|++|.+|++.
T Consensus        55 --~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          55 --PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             --CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence              233446655666666 999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.28  E-value=9.5e-11  Score=91.24  Aligned_cols=109  Identities=23%  Similarity=0.376  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++.+.+++++.++++.|.+.+.+.+||+++    |   +++|+++..|+.+.......         .    .      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~---------~----~------   55 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE---------A----T------   55 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc---------c----c------
Confidence            5778999999999999999888999999963    4   79999999999874421110         0    0      


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             1233447778999999999999999999999999999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=5.8e-11  Score=116.22  Aligned_cols=115  Identities=14%  Similarity=0.185  Sum_probs=96.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      |.++++++++++++.+|++.|.+++++.+||+|+...+|   +++|++|..|+...            .....       
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v------------~~~~~-------  163 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV------------NDRET-------  163 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc------------cccCC-------
Confidence            668899999999999999999999999999997421135   89999999998641            00122       


Q ss_pred             ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          212 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       212 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                           .+.++|+++  ++++.+++++.+|++.|.+++...+||+|++++++|+||++|+++...
T Consensus       164 -----~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        164 -----KLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             -----cHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                 344558766  789999999999999999999999999999999999999999998664

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.28  E-value=2.4e-11  Score=115.62  Aligned_cols=120  Identities=18%  Similarity=0.310  Sum_probs=104.0

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.++..|.+++++.+|+.+|...|.++|++++.+++.   ++   ...||+|.+|+.+.+......              
T Consensus       152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~--------------  211 (610)
T COG2905         152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS--------------  211 (610)
T ss_pred             HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC--------------
Confidence            4577889999999999999999999999998888864   44   789999999999877643322              


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                           ...+|+++|+.+++++..++.+.+|+-+|.+++++++||++ +|+++|++|..||+.+...
T Consensus       212 -----~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         212 -----KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             -----cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                 11356777999999999999999999999999999999995 7999999999999997763

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.28  E-value=4.9e-11  Score=92.85  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             eCCCCCHHHHHHHHhhCC-----cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          139 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       139 v~~~~sl~~al~~m~~~~-----~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      +.+++++.++++.|.+++     +..+||+|+   +|   +++|+++.+++.+.            . ...         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~---------   53 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT---------   53 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence            568899999999998777     478999964   35   79999999988650            0 011         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                         .+++++..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus        54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence               2344477778999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.27  E-value=9.9e-11  Score=107.31  Aligned_cols=120  Identities=11%  Similarity=0.097  Sum_probs=96.4

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc
Q 018309          128 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  205 (358)
Q Consensus       128 ~~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~  205 (358)
                      ++.+|.+  .++++++++++.++++.+.+++.+++||+++  +.+   +++|+++.+|++.+.....         ...+
T Consensus        69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~---------~~~~  134 (292)
T PRK15094         69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAFS  134 (292)
T ss_pred             EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccC---------CcCC
Confidence            3457776  6999999999999999999999999999964  223   7999999999987442100         0011


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       206 v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                                  +.++|.+ +.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+..
T Consensus       135 ------------l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        135 ------------MDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             ------------HHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence                        2233554 5589999999999999999999999999998999999999999996654

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.27  E-value=1.2e-10  Score=90.77  Aligned_cols=109  Identities=14%  Similarity=0.235  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      +++.++++.++.+|++.|.+++...+||+|+    |   +++|+++..++.+.+.....       ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~-----------   56 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS-----------   56 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence            4577899999999999999988899999963    4   69999999999875432100       011           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..+.++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus        57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence             1234457778899999999999999999999999999985 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.5e-10  Score=89.63  Aligned_cols=111  Identities=23%  Similarity=0.457  Sum_probs=91.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++..++++.++.++++.|.+++.+.+||+++   ++   +++|+++..++.+++........       .          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~----------   58 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V----------   58 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence            4677899999999999999988999999965   34   79999999999987754332110       0          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              022336667888999999999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.27  E-value=7.2e-11  Score=95.75  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=80.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA  297 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~-------~~~~v~~~l~~~~~~  297 (358)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............       ....+.++....   
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---   78 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG---   78 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence            4778999999999999999999999999999999999999999998664322111000       001122211100   


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeC
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  337 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~  337 (358)
                       .-.+.|..+++++++++++.+|++.|.+++++++||+|+
T Consensus        79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence             000124567899999999999999999999999999995

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.26  E-value=5.3e-11  Score=116.29  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=91.2

Q ss_pred             eEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccc
Q 018309          137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  216 (358)
Q Consensus       137 v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  216 (358)
                      .++++++++.+|++.|.+++.+.+||+|+..++|   +++|++|..|+.+.     .      ...+.            
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~------------  161 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDT------------  161 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCC------------
Confidence            6899999999999999999999999997422245   89999999998541     0      01122            


Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                      .+.++|++  +++++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++.
T Consensus       162 ~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        162 KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence            34555875  78899999999999999999999999999999999999999999984

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.26  E-value=9.5e-11  Score=91.00  Aligned_cols=108  Identities=19%  Similarity=0.383  Sum_probs=86.8

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..++.+++......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   57 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL----------   57 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence            5678899999999999999999999999963    4   799999999999865432111       011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                        .+.++|.+++.++++++++.++.++|.+ . ..+||++++|+++|++|.+|++.
T Consensus        58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence              2334477778899999999999999988 3 34789988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.26  E-value=1.4e-10  Score=89.79  Aligned_cols=105  Identities=20%  Similarity=0.431  Sum_probs=88.2

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++++++..+.++.++++.|.+++...+||+++    |   +++|+++..+++..      .       ...         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~---------   52 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE---------   52 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence            35778999999999999998888889999963    4   79999999998751      0       011         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         .++++|...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.
T Consensus        53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence               234457777889999999999999999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.24  E-value=6e-11  Score=119.27  Aligned_cols=119  Identities=16%  Similarity=0.259  Sum_probs=98.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      ++|.+++.++++++++.++++.|.+++.+.+||+|+   +|   +++|+++.+|+.+.+......       ..      
T Consensus       451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~------  511 (574)
T PRK01862        451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD------  511 (574)
T ss_pred             HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc------
Confidence            367888899999999999999999999999999975   45   899999999998744321100       01      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~--g~liGiis~~dl~~~~~  273 (358)
                            ..+.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|++|++|+++.+.
T Consensus       512 ------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 ------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  13445588889999999999999999999999999999876  58999999999998654

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.24  E-value=1.8e-10  Score=89.00  Aligned_cols=100  Identities=18%  Similarity=0.289  Sum_probs=84.5

Q ss_pred             eEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccc
Q 018309          137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  216 (358)
Q Consensus       137 v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  216 (358)
                      +++.++.++.+|++.|.+.+.+.+||+|+    |   +++|+++..++.+..              ..+           
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~--------------~~~-----------   51 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENAT--------------YGD-----------   51 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhc--------------ccc-----------
Confidence            56789999999999999999999999963    4   799999999987621              011           


Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       +.++|...+.++.+++++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus        52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             2233666788999999999999999999999999998 699999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK11573 hypothetical protein; Provisional

Probab=99.23  E-value=1.9e-10  Score=110.46  Aligned_cols=122  Identities=13%  Similarity=0.235  Sum_probs=100.3

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  ++.+++.++++.++++.+.+++++++||.+++ ++++|++..+|++....++.       ......... 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence            56777864  58999999999999999999999999998764 78999999999987543211       111222111 


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               ++ +++.+++++.++.++++.|.+++.|-..|+| +.|...|+||+.||++.++|
T Consensus       260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG  312 (413)
T PRK11573        260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence                     22 4788999999999999999999999999999 58999999999999999886

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=2e-10  Score=90.97  Aligned_cols=119  Identities=16%  Similarity=0.292  Sum_probs=91.5

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++++++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..++.+..........         .... ....
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            5678899999999999999899999999975   35   79999999999875432211100         0000 0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ...+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            12344557778899999999999999999999999999986 99999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.22  E-value=1.3e-10  Score=113.07  Aligned_cols=165  Identities=16%  Similarity=0.220  Sum_probs=117.5

Q ss_pred             CCeeeceeCCCCeEEEeeehHHHHHHHHHhccCC---CCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEe
Q 018309           63 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQA  139 (358)
Q Consensus        63 i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v  139 (358)
                      -..+|++.+.    ..-+|..++...+......+   .++..++       +...+.+.+.   .    +..+.++++++
T Consensus        32 ~l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~-------q~~~V~~Vk~---~----~~~~~~~~vtl   93 (450)
T TIGR01302        32 KLNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEE-------QAEQVKRVKR---A----ENGIISDPVTI   93 (450)
T ss_pred             CcCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHH-------HHHHHhhhcc---c----cCceecCceEe
Confidence            3567888543    23458888887776543321   1221111       1111111111   1    12466789999


Q ss_pred             CCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccccccc
Q 018309          140 GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG  219 (358)
Q Consensus       140 ~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~  219 (358)
                      +++.++.+|++.|.+++++++||+|++...+   +++|+++.+|+....     .       ...            .+.
T Consensus        94 ~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~------------~V~  146 (450)
T TIGR01302        94 SPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGK------------PVS  146 (450)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCC------------CHH
Confidence            9999999999999999999999997521114   799999999996410     0       112            244


Q ss_pred             ccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          220 EANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       220 ~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      ++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++...
T Consensus       147 dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       147 EVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             HhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            4577 4899999999999999999999999999999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.22  E-value=1.3e-10  Score=113.76  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=95.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      .+..+++++++++++.+|+++|.+++++.+||++++..+|   +++|+++.+|+.. .           .....      
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----------~~~~~------  159 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----------KDKST------  159 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----------ccCCC------
Confidence            3566788999999999999999999999999997522235   8999999999863 1           00112      


Q ss_pred             cccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          211 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       211 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            .+.++|++  +++++.+++++.+++++|.+++...+||+|++++++|+||++|+++..
T Consensus       160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                  34455876  789999999999999999999999999999999999999999999753

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.21  E-value=2.3e-10  Score=109.93  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=113.2

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      ..+|.+  .+++++.++++.++++.+.+++++++||++++  .+   +++|+++.+|++.++..   .        ..+ 
T Consensus       194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d---~ivGiv~~kDll~~~~~---~--------~~~-  256 (408)
T TIGR03520       194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--ID---NITGVLYIKDLLPHLNK---K--------NFD-  256 (408)
T ss_pred             eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CC---ceEEEEEHHHHHhHhcc---C--------CCC-
Confidence            446765  78999999999999999999999999999642  22   79999999999874321   0        011 


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccccccc
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN  286 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~  286 (358)
                                 +.++|. ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||.+|++..+-...+...   + .
T Consensus       257 -----------l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~---d-~  320 (408)
T TIGR03520       257 -----------WQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF---D-D  320 (408)
T ss_pred             -----------HHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC---C-c
Confidence                       122344 57899999999999999999999999999999999999999999996643322111   0 0


Q ss_pred             HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhc
Q 018309          287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN  326 (358)
Q Consensus       287 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~  326 (358)
                      -.+          ...-.....+.++...++.+..+.|--
T Consensus       321 ~~~----------~i~~~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       321 EDL----------IYSKIDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             Ccc----------ceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence            000          000112345677888888888877743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=3.7e-10  Score=92.65  Aligned_cols=126  Identities=25%  Similarity=0.469  Sum_probs=96.1

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhccc----CCCCcccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH----SSSSLPILQQPVSSIQ  210 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~----~~~~~~~~~~~v~~l~  210 (358)
                      +++++++++++.++++.|.+++.+.+||+|+    |   +++|+++..++.+++......    .++.......++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            5678999999999999999999999999963    4   799999999999877543211    011111122222221 


Q ss_pred             cccc-----------cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          211 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       211 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                       ..|           ...+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           12456678888999999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.19  E-value=1.4e-10  Score=105.62  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             CCCCCCC-ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309          129 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  207 (358)
Q Consensus       129 ~~~~~~~-~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~  207 (358)
                      +++|.++ +.++.+++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..|+.+++....        ....   
T Consensus       158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~---  220 (268)
T TIGR00393       158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS---  220 (268)
T ss_pred             HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC---
Confidence            3467777 899999999999999999999999999975   45   7999999999988543110        0112   


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 018309          208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  264 (358)
Q Consensus       208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis  264 (358)
                               .+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       221 ---------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       221 ---------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ---------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                     244558888999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.13  E-value=1.3e-09  Score=84.46  Aligned_cols=101  Identities=15%  Similarity=0.188  Sum_probs=85.0

Q ss_pred             ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309          136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  215 (358)
Q Consensus       136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  215 (358)
                      ...+.++.++.++.+.+.+++...+||+++...+|   +++|+++..++.+....                         
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~-------------------------   55 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN-------------------------   55 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH-------------------------
Confidence            46778999999999999998888999996311035   79999999999874321                         


Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                           +|..++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|+.+
T Consensus        56 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 -----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             -----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                 2556788999999999999999999999999995 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.10  E-value=1.1e-09  Score=106.04  Aligned_cols=120  Identities=18%  Similarity=0.326  Sum_probs=99.4

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd-~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      .++++|+  .++.+++.++++.++.+.+.+++++++||.+ +.+.++|++..+|++.....+.. ..     ....    
T Consensus       207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~----  276 (429)
T COG1253         207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV----  276 (429)
T ss_pred             EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence            3445565  4688999999999999999999999999999 45799999999999986654321 11     1111    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               .. .+++.+++++++.+++++|.+++.|-..|+| +.|...|+||+.||++.++|
T Consensus       277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence                     11 2789999999999999999999999999999 58999999999999999986

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.10  E-value=1.1e-09  Score=86.31  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=87.7

Q ss_pred             CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++.++++++++.+|++.|...+ .+.+||+|+    |   +++|+++..++.+++......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~-----------   58 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY-----------   58 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence            4667889999999999998877 889999963    4   799999999998754321100     000           


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~vpVvd~~g~liGiis~~dl~~  270 (358)
                      ....++++|..++.++.+++++.++++.|.+++..   ..||++++|+++|++|..|++.
T Consensus        59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            01135556888899999999999999999988753   4468888899999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=2.3e-09  Score=82.88  Aligned_cols=104  Identities=22%  Similarity=0.359  Sum_probs=85.3

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ++.++.++.++.+++..|.+.+.+.+||+++   .|   +++|+++..++.+.    .         ...+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~----~---------~~~~---------   53 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRN----P---------EEEQ---------   53 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhc----c---------ccch---------
Confidence            4678889999999999999888899999964   34   79999999998751    0         0111         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                         +.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|..|++.
T Consensus        54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence               22336667889999999999999999999999999984 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.07  E-value=1.6e-09  Score=87.78  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCc-ccccc---cccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQQ---PVSSIQ  210 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~-~~~~~---~v~~l~  210 (358)
                      .+.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++++........... .....   .+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            5788999999999999999999999999975   45   89999999999997754321100000 00000   000110


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  256 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~  256 (358)
                         ....+.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus        76 ---~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 ---TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             ---hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence               0001122345678999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.07  E-value=9.8e-10  Score=98.99  Aligned_cols=109  Identities=16%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      .....+.+++++.+..++-.+.+.+|.||+|+   ..   +++|++|.+|+..       ..      -..+        
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~-------~~------~~t~--------  250 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLD-------KK------PSTT--------  250 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhc-------CC------CCcc--------
Confidence            56778889999999999999999999999976   33   8999999999876       11      1223        


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                          +..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus       251 ----ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         251 ----IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ----HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                33349999999999999999999999999999999999999999999999998664

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.06  E-value=1.4e-09  Score=106.63  Aligned_cols=116  Identities=12%  Similarity=0.226  Sum_probs=92.6

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.+++.++.+++++.++++.|.+++.+.+||+|+   +|   +++|+++..|+.+.+......       ...    
T Consensus       338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~----  400 (454)
T TIGR01137       338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD----  400 (454)
T ss_pred             HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC----
Confidence            4478889999999999999999999999999999974   35   799999999998865431110       111    


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                              .+.++|.+++.++.+++++.++++.|.+++   .|+|+++|+++|+||.+|++..+
T Consensus       401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                    244557778889999999999999998864   35565679999999999999854

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.04  E-value=6.6e-10  Score=75.92  Aligned_cols=54  Identities=31%  Similarity=0.532  Sum_probs=50.9

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++.+
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            466888999999999999999999999999999999999999999999999865

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.7e-09  Score=103.60  Aligned_cols=116  Identities=17%  Similarity=0.286  Sum_probs=102.0

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      .+++.+|+..++++.++.|+.+++..+++     ..+..+.|+|+++++.|+++.++++..-.          +..+.+ 
T Consensus       132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~-  200 (451)
T COG2239         132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD-  200 (451)
T ss_pred             hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence            46788899999999999999999999984     35788999999999999999999985211          345566 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                                  +|.+.++++.+++...++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus       201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                        7777899999999999999999999999999999 589999999999998765

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.99  E-value=1.6e-09  Score=73.94  Aligned_cols=54  Identities=28%  Similarity=0.409  Sum_probs=50.7

Q ss_pred             cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      +|.++++++++++++.++++.|.+++.+++||+| ++|+++|+||.+||+++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence            6778999999999999999999999999999999 47999999999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.85  E-value=2.1e-07  Score=87.91  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=92.0

Q ss_pred             CCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 018309          223 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  302 (358)
Q Consensus       223 ~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~  302 (358)
                      ........++.+..++++.|...+...+.|+|+++++.|.++..++.......         ..+.+             
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------  306 (363)
T TIGR01186       249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------  306 (363)
T ss_pred             cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------
Confidence            33444566777899999999999999999999999999999999988754322         23344             


Q ss_pred             cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .+.....++++++++.+++..|.+++.. +||+| ++|+++|+||..++++++.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       307 VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            2334577899999999999999999998 99999 58999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.80  E-value=3.8e-08  Score=89.76  Aligned_cols=121  Identities=14%  Similarity=0.303  Sum_probs=101.7

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHh
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ  292 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~-~~~l~~~~~~v~~~l~  292 (358)
                      +|.|+|.  .++..+..+++.+++.+.+.+....++|+-.++ ++++|++..+|+++++.++. +.+     ..+..++ 
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a-  274 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA-  274 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence            5677785  458899999999999999999999999998643 57999999999999887654 222     2222222 


Q ss_pred             cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                                   .+++++++++++.+-+..|..++-|--.||| +.|.+.|+||+.||++.++|
T Consensus       275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                         3689999999999999999999999999999 59999999999999999886

>PRK11573 hypothetical protein; Provisional

Probab=98.78  E-value=2.2e-07  Score=89.45  Aligned_cols=137  Identities=17%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             HHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccC
Q 018309           16 LIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN   95 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~   95 (358)
                      .|...++ +...++.|+|-   .+.+++.++.+.|+.++++.+.+++....||++.+..+.+|++...|++..+..    
T Consensus       177 mi~~vl~-l~~~~v~eiMt---Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----  248 (413)
T PRK11573        177 MLLSVLD-LEKVTVDDIMV---PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----  248 (413)
T ss_pred             HHHHHhc-cCCCChhhcCC---ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----
Confidence            5555554 56778899994   346999999999999999999999999999998877899999999999864321    


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceE
Q 018309           96 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  175 (358)
Q Consensus        96 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~  175 (358)
                      +....        ...+   ..              ..+++..++++.++.++++.|.+++.|-+.|+|+   .|   ..
T Consensus       249 ~~~~~--------~~~l---~~--------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~  297 (413)
T PRK11573        249 KKEFT--------KENM---LR--------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DI  297 (413)
T ss_pred             cCcCC--------HHHH---Hh--------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---Ce
Confidence            01110        1111   11              1347889999999999999999999999999976   56   69


Q ss_pred             EEeechHhHHHHHHhh
Q 018309          176 LYLASLSDILKCICRH  191 (358)
Q Consensus       176 vgilt~~di~~~l~~~  191 (358)
                      .|++|.+|++.-+.-.
T Consensus       298 ~GiVTleDilEeivGe  313 (413)
T PRK11573        298 QGLVTVEDILEEIVGD  313 (413)
T ss_pred             EEEeeHHHHHHHHhCC
Confidence            9999999999977643

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.77  E-value=2.6e-08  Score=85.24  Aligned_cols=112  Identities=14%  Similarity=0.383  Sum_probs=97.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      +..++..++++.+++..+.+...+++||+.+ ...+.|++-.+|++..+.+...      ...+.+.|            
T Consensus        78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------  139 (293)
T COG4535          78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------  139 (293)
T ss_pred             HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence            5788999999999999999999999999975 4689999999999997764422      13445533            


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                        +|.+.++++-.+...++.|...+.|-..|+| +-|-+-|.||..|||..++|
T Consensus       140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence              5788999999999999999999999999999 58999999999999999986

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=2e-07  Score=89.09  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccc
Q 018309          229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC  308 (358)
Q Consensus       229 v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~  308 (358)
                      ..++.+..++++.|...+.+++.|+|+++++.|+++..++......+         .++.+             .+....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~~~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDA-------------ALIDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhh-------------hhccCC
Confidence            34667889999999999999999999999999999999998754321         23344             223457


Q ss_pred             eEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          309 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       309 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .++++++++.+++..+.+.... +|||| ++|+++|+||..++++++.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            8899999999999999998776 99999 58999999999999999854

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.69  E-value=5.2e-07  Score=87.54  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=93.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      ...+..++.+.++.++++.+.+++++|+||+++ ..+    +++|++..+|++........ .         .....   
T Consensus       215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~-~---------~~~~~---  276 (429)
T COG1253         215 RTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQS-D---------LDLRV---  276 (429)
T ss_pred             cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCcc-c---------cchhh---
Confidence            467889999999999999999999999999972 333    79999999999996543321 0         00000   


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                              .. .++..++++.++.++++.|.+.+.+-..|+|+-|.+.|++|..|++..+..
T Consensus       277 --------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         277 --------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             --------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence                    01 168899999999999999999999999999999999999999999996653

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.68  E-value=4.8e-08  Score=89.78  Aligned_cols=107  Identities=19%  Similarity=0.282  Sum_probs=92.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  301 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~  301 (358)
                      +++.++++.++.++++....+++..+||..+   .++++|+||.+|+-.+ ...        ...+.+            
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence            5778999999999999999999999999964   4699999999998776 111        345565            


Q ss_pred             ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                       +|+.++++.+.+.+|.++-+.+.+++...+|||| ++|.++.+|+++||.+.
T Consensus       176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence             7777778899999999999999999999999999 58999999999999874

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.57  E-value=1e-07  Score=92.08  Aligned_cols=136  Identities=20%  Similarity=0.334  Sum_probs=105.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhcccccccc-----cc---
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQIH-----LD---  283 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-----g~liGiis~~dl~~~~~~~~~~~l~-----~~---  283 (358)
                      .++|+|.++++++..-+.+..+.+.+.....+.+||+|+.     +++.|+|-++.++.+++++.+....     +.   
T Consensus       583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            5678999999999999999999999999999999999962     5889999999999988765544210     00   


Q ss_pred             cccHHHHHhcCCC--------------CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehH
Q 018309          284 EMNIHQALQLGQD--------------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLS  349 (358)
Q Consensus       284 ~~~v~~~l~~~~~--------------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~  349 (358)
                      ..+.+++-.....              .+.+ .+|.+.++++.+++++..++..|.+-+.+++.||+ ..++.+|++|+.
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~-p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR~  740 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLH-PFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTRK  740 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccc-cccCCCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEehh
Confidence            1122222111000              0011 17888999999999999999999999999999999 577889999999


Q ss_pred             HHHHH
Q 018309          350 DVFRF  354 (358)
Q Consensus       350 Dil~~  354 (358)
                      |+.+.
T Consensus       741 D~~~~  745 (762)
T KOG0474|consen  741 DLARY  745 (762)
T ss_pred             hhhhH
Confidence            99854

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.55  E-value=1.5e-06  Score=82.25  Aligned_cols=109  Identities=10%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309          135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  214 (358)
Q Consensus       135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  214 (358)
                      ......++.+..++++.|...+...+.|+|.   ++   ++.|.++.+++..|.....            +         
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~~------------~---------  303 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKAQ------------G---------  303 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcCC------------c---------
Confidence            3345667788999999999999999999965   34   7999999999887654211            1         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                         +.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+||+.+++..+..
T Consensus       304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       304 ---LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ---hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence               1222445677899999999999999999998 9999999999999999999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.46  E-value=1.7e-06  Score=79.78  Aligned_cols=168  Identities=17%  Similarity=0.190  Sum_probs=116.9

Q ss_pred             HHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCC---CCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCC
Q 018309           59 YEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP  135 (358)
Q Consensus        59 ~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~  135 (358)
                      ..+.....|++.+    ...-+|..+.+.++..+.--+   .+-..+ .+...+..|+..+..             ....
T Consensus        56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g-------------~~~~  117 (503)
T KOG2550|consen   56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENG-------------FINN  117 (503)
T ss_pred             hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhcc-------------cccC
Confidence            3444456687754    234467777766554432111   233322 223334455443332             1335


Q ss_pred             ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309          136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  215 (358)
Q Consensus       136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  215 (358)
                      ++.+.|+.++.++++.-..++...+|++.+ ...|  .+++|++|-+|+-. +-+           ...           
T Consensus       118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~-g~~~--~KLvG~vtsrdi~f-~~~-----------~~~-----------  171 (503)
T KOG2550|consen  118 PIVISPTTTVGEVKEAKEKHGFSGIPVTED-GKRG--SKLVGIITSRDIQF-LED-----------NSL-----------  171 (503)
T ss_pred             CcccCCcccchhhhhhcccccccccccccC-Cccc--ceeEEEEehhhhhh-hhc-----------ccc-----------
Confidence            677889999999999999999999999963 2222  38999999999843 311           111           


Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                       -+.++|+...++.+...++.++-+++.+++...+||||++|+++.+++++||.+.
T Consensus       172 -~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  172 -LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence             2345588788899999999999999999999999999999999999999999873

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.42  E-value=4.9e-06  Score=76.29  Aligned_cols=143  Identities=19%  Similarity=0.244  Sum_probs=114.6

Q ss_pred             chhhHHHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHH
Q 018309           11 HNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR   90 (358)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~   90 (358)
                      +..+.+++..++ |..-++.|+|-   .+..+..++.+++..+..+.+...-...+|+|..+..+.+|++-..|+...+.
T Consensus       185 ~~~rdmL~gvLD-Le~~tV~DIMv---pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~  260 (423)
T COG4536         185 KIDRDMLLGVLD-LENLTVSDIMV---PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN  260 (423)
T ss_pred             cccHHHHhcccc-cccceeeeeec---cccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh
Confidence            334677888876 66788999994   34689999999999999999999999999999888788999999999988775


Q ss_pred             HhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCC
Q 018309           91 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  170 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g  170 (358)
                      ..    .++..+.           ..+.              ..+++.++..+++.+-+..|.+++-|-..|+|+   .|
T Consensus       261 e~----~~~~k~d-----------~~~~--------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG  308 (423)
T COG4536         261 EK----NEFTKED-----------ILRA--------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG  308 (423)
T ss_pred             cc----CcccHhH-----------HHHH--------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC
Confidence            32    1122111           1122              237899999999999999999999999999986   66


Q ss_pred             CcceEEEeechHhHHHHHHhhc
Q 018309          171 SCQEILYLASLSDILKCICRHF  192 (358)
Q Consensus       171 ~~~~~vgilt~~di~~~l~~~~  192 (358)
                         .+.|++|.+||+.-+.-.+
T Consensus       309 ---~i~GLVTLEDIlEEIVGdf  327 (423)
T COG4536         309 ---DIQGLVTLEDILEEIVGDF  327 (423)
T ss_pred             ---cEEeeeeHHHHHHHHhccc
Confidence               8999999999999665443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=5.6e-06  Score=79.29  Aligned_cols=106  Identities=13%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             eCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccc
Q 018309          139 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  218 (358)
Q Consensus       139 v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v  218 (358)
                      ..++.+..+|+..|..++...+.|+|+   ++   ++.|+++..++.++....            .+            +
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~------------~  339 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QG------------L  339 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cc------------h
Confidence            446678899999999999999999975   45   899999999997743211            11            1


Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                      .+.+.....++.+++++.+++..+.+.... +||+|++|+++|+||..+++..+...
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            222444677899999999999999997766 99999999999999999999977543

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.20  E-value=3.5e-06  Score=66.05  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      +++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+..
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            466778888999999999999999999999999999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.16  E-value=7.3e-06  Score=70.47  Aligned_cols=117  Identities=11%  Similarity=0.114  Sum_probs=95.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +....++++..+.++.+++..+.+...+|.||+.++  .   +.+.|++-.+|+++|+......         -.+++  
T Consensus        74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--k---D~v~GIL~AKDLL~~~~~~~~~---------F~i~~--  137 (293)
T COG4535          74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--K---DHVEGILLAKDLLPFMRSDAEP---------FDIKE--  137 (293)
T ss_pred             ccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--c---hhhhhhhhHHHHHHHhcCCccc---------ccHHH--
Confidence            446679999999999999999999999999999642  2   3799999999999986533221         11222  


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                                 +-+|.+.++++-.+...++.|..++.+-..|+|+-|.+-|+||..|++..+-.
T Consensus       138 -----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         138 -----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             -----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence                       23467788999999999999999999888899999999999999999987653

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.15  E-value=6.9e-06  Score=79.69  Aligned_cols=143  Identities=13%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhccc-C-CCCccc----
Q 018309          128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-S-SSSLPI----  201 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~-~-~~~~~~----  201 (358)
                      ++++|..|++++..-+.+....+.+.....+..||+|+.+.+ ..+.+.|++-++.++..+.+..-. . ++...+    
T Consensus       584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~-~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN-EAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc-cchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            467899999999999999999999999999999999864332 123789999999998877433111 1 000000    


Q ss_pred             ---------cccccccccccccc----ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 018309          202 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  268 (358)
Q Consensus       202 ---------~~~~v~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl  268 (358)
                               -..+++++.+...+    .....+|++.++++.+++++..+..++++-+.+++.|+++.++.+|++|++|+
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~  742 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL  742 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence                     01112222221111    13456788999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 018309          269 TAL  271 (358)
Q Consensus       269 ~~~  271 (358)
                      ...
T Consensus       743 ~~~  745 (762)
T KOG0474|consen  743 ARY  745 (762)
T ss_pred             hhH
Confidence            863

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.01  E-value=1.8e-05  Score=50.77  Aligned_cols=47  Identities=28%  Similarity=0.483  Sum_probs=43.0

Q ss_pred             ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          308 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       308 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                      +.++.+++++.++.+.|.+.+.+++||++ ++++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence            56789999999999999999999999999 468999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.94  E-value=2.5e-05  Score=61.13  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309          303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  353 (358)
Q Consensus       303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~  353 (358)
                      +|.+++.++++++++.++++.|...+.+.+||+| ++|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence            6777889999999999999999999999999999 4799999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.93  E-value=3.9e-05  Score=49.15  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.6

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            46788999999999999999999999999889999999999998643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00062  Score=66.59  Aligned_cols=128  Identities=15%  Similarity=0.175  Sum_probs=88.4

Q ss_pred             ceEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHh-ccccc---ccc--cccccHHHHHhcCCC
Q 018309          226 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAK-DKAYA---QIH--LDEMNIHQALQLGQD  296 (358)
Q Consensus       226 ~~~v~~~-~~l~~a~~~m~~~~~~~vpVvd--~~g~liGiis~~dl~~~~~-~~~~~---~l~--~~~~~v~~~l~~~~~  296 (358)
                      ..+++.+ .++.+...+|.+...+..||+=  +...++|.+.++|+...+. ....+   .-+  ....+...+.....+
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            5555555 7999999999999999999873  3578999999999876432 11110   000  000111111111111


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                      +..-.++|...+.++...++..-+++++.+-++..+.|..  +|++.|+||..|++++.
T Consensus       638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            1111137888999999999999999999999998886665  59999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.0029  Score=62.05  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=94.9

Q ss_pred             CceEeCCC-CCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCC-C--Ccccccccccccc
Q 018309          135 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS-S--SLPILQQPVSSIQ  210 (358)
Q Consensus       135 ~~v~v~~~-~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~-~--~~~~~~~~v~~l~  210 (358)
                      ++..++.+ .++.+...+|.+...+..||+-+.+ .   +..+|++.++++.--+........ .  .....+.+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-s---q~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-S---QRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccc-c---ceeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666665 7999999999999999999995432 2   279999999998876642211110 0  0012233333222


Q ss_pred             ccc-ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          211 LGT-WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       211 i~~-~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      .+. ......++|...+.++...++..-+++++.+-+.+.+.|. ++|++.|+||.+|++...
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            111 1124567888889999999999999999999999999766 689999999999998754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.93  E-value=0.0054  Score=55.87  Aligned_cols=145  Identities=19%  Similarity=0.239  Sum_probs=96.8

Q ss_pred             ceEEEEecCCCCCCcceEEEeechHhHHH-----HHHhhcccCCCCcccccccccccccccccccccccCCC--CceEec
Q 018309          158 ATVPIIHSTGPAGSCQEILYLASLSDILK-----CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR--PFAMLR  230 (358)
Q Consensus       158 ~~lpV~d~~~~~g~~~~~vgilt~~di~~-----~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~--~~~~v~  230 (358)
                      +++.+..    +|   +++-+=|+.+|+.     |+..+...           +...    ..-+..++|..  ..+.-.
T Consensus       233 ~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~-----------v~~~----~VltA~~IM~~~~~~~~~~  290 (386)
T COG4175         233 DRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN-----------VDRS----RVLTAKDIMRRPDLLIRKT  290 (386)
T ss_pred             ceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc-----------CChh----heeeHHHhhcccccccccc
Confidence            4555553    46   8999999999886     22222111           0000    00133445653  222222


Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceE
Q 018309          231 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQM  310 (358)
Q Consensus       231 ~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~  310 (358)
                      +...-..++..+.+.+.+.+.+++.+++.+|+++..++....                               +..++.+
T Consensus       291 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-------------------------------~~~~~~~  339 (386)
T COG4175         291 PGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA-------------------------------LIDDVLT  339 (386)
T ss_pred             cccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc-------------------------------ccccccc
Confidence            222334677888887777777788778899999988876630                               0124677


Q ss_pred             EcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          311 CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       311 v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      +..++++.+.+....+.... ++|+| ++|+++|+++...++.++.+
T Consensus       340 v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         340 VDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             cCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence            88999999999888888775 78999 58999999999999999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.86  E-value=0.0042  Score=59.25  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=72.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +..++|.+.......+.+  .+++.   ++.+++.|+|+     |+++..+...+.....       +.++.+ +     
T Consensus       275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-----  331 (382)
T TIGR03415       275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-----  331 (382)
T ss_pred             eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence            345667433222233222  44443   78999999985     8888777655433111       122333 1     


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                              .....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..++++++.+
T Consensus       332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence                    12467889999999999988887764 88999 4 999999999999999875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.94  E-value=0.028  Score=56.56  Aligned_cols=61  Identities=10%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK  193 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~  193 (358)
                      .++|.+++..+..+.|..|.-+.+....++.+|++++.+ .   .-++|.+.++.+..++..+..
T Consensus       591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e-s---miLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKE-S---MILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             eeeccccceeeeccCcHHHHHHHHHhCccceeccccCcc-c---ceeeehhHHHHHHHHHHhhcC
Confidence            458999999999999999998887776699999997532 2   268999999999998866543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.31  E-value=0.21  Score=44.53  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          232 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       232 ~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                      .....+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            334466888888899999999999999999999999876

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.04  E-value=0.11  Score=47.54  Aligned_cols=89  Identities=15%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             HHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCC
Q 018309          145 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR  224 (358)
Q Consensus       145 l~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~  224 (358)
                      -..++..+.+.+.+.+.+++.   .+   +.+|+++..+....                                 .+.+
T Consensus       295 ~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~~  335 (386)
T COG4175         295 PRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALID  335 (386)
T ss_pred             cchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------cccc
Confidence            345666776666655555542   33   68888887776551                                 1344


Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      .+.++..++++.+.+....+... .+||+|++|+++|++++..++.++.
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            57788999999998888887654 6889999999999999999998764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=93.14  E-value=0.22  Score=47.62  Aligned_cols=50  Identities=12%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      +...+.++++++++.+++..+.+.+. -+||+|+ |+++|+|++.+++..+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       331 LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            34467789999999999999988765 4888885 99999999999998653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.33  E-value=1.7  Score=38.92  Aligned_cols=113  Identities=15%  Similarity=0.230  Sum_probs=68.9

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc--------cccccc-cccccHHHHHhcC
Q 018309          224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK--------AYAQIH-LDEMNIHQALQLG  294 (358)
Q Consensus       224 ~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~--------~~~~l~-~~~~~v~~~l~~~  294 (358)
                      ..++.++.|  +.+|+++-.     ++.|.+ +|+++-+-+..+++....+.        ....+. +....+.+.....
T Consensus       187 kTivfVTHD--idEA~kLad-----ri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         187 KTIVFVTHD--IDEALKLAD-----RIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             CEEEEEecC--HHHHHhhhc-----eEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            346677766  778877643     578886 79999999988887632211        000000 0112222222110


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                      .    +.     .--.........+++..+...+...+||+| ++|+++|.||..+++..
T Consensus       259 ~----~~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 E----PA-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             c----cc-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            0    00     001122344455588888899999999999 58999999999999864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=85.80  E-value=1.1  Score=45.57  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhc
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~  274 (358)
                      .+...|.++|-+++.++..+.|..|..+.+....++.+|+||+  ...++|.|+++.+..++..
T Consensus       585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            3445788999999999999999999998888777999999985  4578999999999887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		6e-29
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		2e-19
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		3e-19
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		8e-18
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		8e-18
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-13
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		7e-13
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-12
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-08
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		5e-07
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		7e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 44/331 (13%)
Query: 27  HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 86
           H C  +  TSS   ++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI
Sbjct: 35  HRCYDLIPTSS---KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91
Query: 87  LILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 145
            IL       S L +  ELE H I  W+   LQ + K            PLV   P  SL
Sbjct: 92  NILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNASL 137
Query: 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205
            +    +++NK+  +P+I     +G+   IL    +   LK     F         + + 
Sbjct: 138 FDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMSKS 191
Query: 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 265
           +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+
Sbjct: 192 LEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSK 242
Query: 266 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 325
            D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ RL 
Sbjct: 243 FDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINRLV 292
Query: 326 NPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
              V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 293 EAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 152/316 (48%), Gaps = 34/316 (10%)
Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++   DV L VK +  +L    +   PLWD    +F G+L+  DF+ +++      S+  
Sbjct: 32  RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY-YQSSSFP 90
Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           E   E        + K +L   R+++      P   +   P  SL +  L + +++   +
Sbjct: 91  EAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRI 142
Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I   G  GS + I+ + +   ILK I  + K ++    +L+ P++ + +GTW      
Sbjct: 143 PLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----MLRVPLNQMTIGTW------ 191
Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
                 A       +   + +L + ++S++PIV+   +LL++Y   D+  L +D  Y+ +
Sbjct: 192 ---SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL 248
Query: 281 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
              ++++ +AL L + AN    F+G     C  +D L  + + + +  V RL +V+   K
Sbjct: 249 ---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK 298
Query: 341 RVEGIISLSDVFRFLL 356
            +EGI+SL+D+  +++
Sbjct: 299 -LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 152/316 (48%), Gaps = 34/316 (10%)
Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++   DV L VK +  +L    +   PLWD    +F G+L+  DF+ +++      S+  
Sbjct: 33  RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY-YQSSSFP 91
Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
           E   E        + K +L   R+++      P   +   P  SL +  L + +++   +
Sbjct: 92  EAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRI 143
Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I   G  GS + I+ + +   ILK I  + K ++    +L+ P++ + +GTW      
Sbjct: 144 PLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----MLRVPLNQMTIGTW------ 192
Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
                 A       +   + +L + ++S++PIV+   +LL++Y   D+  L +D  Y+ +
Sbjct: 193 ---SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL 249
Query: 281 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
              ++++ +AL L + AN    F+G     C  +D L  + + + +  V RL +V+   K
Sbjct: 250 ---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK 299
Query: 341 RVEGIISLSDVFRFLL 356
            +EGI+SL+D+  +++
Sbjct: 300 -LEGILSLADILNYII 314

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 65/330 (19%)
Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++  LD +L VK++ +VL +  +   PLWD    RF G+L+  DFI +++   +N     
Sbjct: 41  RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF- 99
Query: 101 EEELETHTISAWKVGKLQL----NLKR-----QMDGNGRPCPRPLVQAGPYDSLKEVALK 151
             EL         V KLQL    +++R     Q+D       RPL +A          LK
Sbjct: 100 --EL---------VDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEA---------CLK 139
Query: 152 ILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI---CR--HFKHSSSSLPILQQPV 206
           +L+++   +P+I         + ++ + +   ILK +   CR  HF         L+ P+
Sbjct: 140 MLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKFVALNCRETHF---------LKIPI 189
Query: 207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRS 266
             + +      I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   
Sbjct: 190 GDLNI------ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAY 240
Query: 267 DITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN 326
           D+  L K   Y  + L   ++ +AL    D      F G     C ++D L  +M+ +  
Sbjct: 241 DVLGLIKGGIYNDLSL---SVGEALMRRSD-----DFEG--VYTCTKNDKLSTIMDNIRK 290
Query: 327 PGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
             V R  +V+    R+ G+++LSD+ +++L
Sbjct: 291 ARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 65/330 (19%)
Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++  LD +L VK++ +VL +  +   PLWD    RF G+L+  DFI +++   +N     
Sbjct: 34  RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF- 92
Query: 101 EEELETHTISAWKVGKLQL----NLKR-----QMDGNGRPCPRPLVQAGPYDSLKEVALK 151
             EL         V KLQL    +++R     Q+D       RPL +A          LK
Sbjct: 93  --EL---------VDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEA---------CLK 132
Query: 152 ILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI---CR--HFKHSSSSLPILQQPV 206
           +L+++   +P+I         + ++ + +   ILK +   CR  HF         L+ P+
Sbjct: 133 MLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKFVALNCRETHF---------LKIPI 182
Query: 207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRS 266
             + +      I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   
Sbjct: 183 GDLNI------ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAY 233
Query: 267 DITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN 326
           D+  L K   Y  + L   ++ +AL    D      F G     C ++D L  +M+ +  
Sbjct: 234 DVLGLIKGGIYNDLSL---SVGEALMRRSD-----DFEG--VYTCTKNDKLSTIMDNIRK 283
Query: 327 PGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
             V R  +V+    R+ G+++LSD+ +++L
Sbjct: 284 ARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 277
           I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y
Sbjct: 16  ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 278 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 337
             + L   ++ +AL    D      F G     C ++D L  +M+ +    V R  +V+ 
Sbjct: 73  NDLSL---SVGEALMRRSDD-----FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVDD 122
Query: 338 GSKRVEGIISLSDVFRFLL 356
              R+ G+++LSD+ +++L
Sbjct: 123 -VGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 237 SALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296
             +  L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D
Sbjct: 32  DVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALXRRSD 88
Query: 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
                 F G     C ++D L  + + +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 89  D-----FEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 271 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 330
               KA A           A  L Q  + ++  N  RCQ    +D L ++M      G  
Sbjct: 81  ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 331 RLVIVEAGSKRVEGIISLSDVFRFLLG 357
           R V VE  + R+ GIIS+ DV +  +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-60
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-54
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-53
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-31
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-27
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-20
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	6e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	7e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-10
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	9e-05
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	7e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	9e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  196 bits (499), Expect = 3e-60
 Identities = 66/317 (20%), Positives = 140/317 (44%), Gaps = 36/317 (11%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++   DV L VK +  +L    +   PLWD    +F G+L+  DF+ +++    + S   
Sbjct: 33  RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPE 92

Query: 101 E-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
              E++   +   +  + ++             P   +   P  SL +  L + +++   
Sbjct: 93  AIAEIDKFRLLGLREVERKIGAI----------PPETIYVHPMHSLMDACLAMSKSRARR 142

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 219
           +P+I   G  GS + I+ + +   ILK I  + K       +L+ P++ + +GTW     
Sbjct: 143 IPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQMTIGTWSNLA- 196

Query: 220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ 279
                          +   + +L + ++S++PIV+   +LL++Y   D+  L +D  Y+ 
Sbjct: 197 --------TASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN 248

Query: 280 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           + L   ++ +AL                   C  +D L  + + + +  V RL +V+  +
Sbjct: 249 LDL---SVGEALLKRPANFD-------GVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-N 297

Query: 340 KRVEGIISLSDVFRFLL 356
            ++EGI+SL+D+  +++
Sbjct: 298 LKLEGILSLADILNYII 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  179 bits (456), Expect = 5e-54
 Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 39/317 (12%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
           +++   D +L VK+AF  L   G+   PLWD  K  FVG+L+  DFI IL     + + +
Sbjct: 45  SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALV 103

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
              ELE H I  W+   LQ               +PLV   P  SL +    +++NK+  
Sbjct: 104 QIYELEEHKIETWREVYLQD------------SFKPLVCISPNASLFDAVSSLIRNKIHR 151

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 219
           +P+I            LY+ +   ILK +             + + +  +Q+GT+     
Sbjct: 152 LPVIDP-----ESGNTLYILTHKRILKFLKLFITEFPKP-EFMSKSLEELQIGTY----- 200

Query: 220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ 279
                  AM+R T  +  AL + VQ  VS++P+VD+   ++DIYS+ D+  LA +K Y  
Sbjct: 201 ----ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 256

Query: 280 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
           +    +++ +ALQ        +         C   + L  ++ RL    V RLV+V+   
Sbjct: 257 LD---VSVTKALQHRSHYFEGV-------LKCYLHETLEAIINRLVEAEVHRLVVVDE-H 305

Query: 340 KRVEGIISLSDVFRFLL 356
             V+GI+SLSD+ + L+
Sbjct: 306 DVVKGIVSLSDILQALV 322

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  176 bits (448), Expect = 7e-53
 Identities = 69/316 (21%), Positives = 137/316 (43%), Gaps = 37/316 (11%)

Query: 41  QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 100
           ++  LD +L VK++ +VL +  +   PLWD    RF G+L+  DFI +++   +N     
Sbjct: 41  RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF- 99

Query: 101 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 160
            E ++   +   K  +  L +                   P   L E  LK+L+++   +
Sbjct: 100 -ELVDKLQLDGLKDIERALGVD----------QLDTASIHPSRPLFEACLKMLESRSGRI 148

Query: 161 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 220
           P+I         + ++ + +   ILK +  + + +      L+ P+  + + T       
Sbjct: 149 PLIDQDEETHR-EIVVSVLTQYRILKFVALNCRET----HFLKIPIGDLNIITQ------ 197

Query: 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 280
                    + T  +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  +
Sbjct: 198 ---DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL 254

Query: 281 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
            L   ++ +AL    D              C ++D L  +M+ +    V R  +V+    
Sbjct: 255 SL---SVGEALMRRSDDFE-------GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VG 303

Query: 341 RVEGIISLSDVFRFLL 356
           R+ G+++LSD+ +++L
Sbjct: 304 RLVGVLTLSDILKYIL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  114 bits (288), Expect = 3e-31
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 200 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 259
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 260 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 319
           +++Y   D+  L K   Y  + L    + +AL    D       + +    C ++D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSD-------DFEGVYTCTKNDKLST 104

Query: 320 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
           +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 192
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 193 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 246
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 247 VSSIPIVDDNDSLLDIYSRSDI 268
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 51  VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 107
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 108 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 167
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 168 -PAGSCQEILYLASLSDILKCI 188
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  107 bits (269), Expect = 3e-27
 Identities = 39/316 (12%), Positives = 100/316 (31%), Gaps = 48/316 (15%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
            ++  +     +++A   + E     +P+ +    + VG+++++D +  +          
Sbjct: 12  KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIR 71

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
            + E          V ++       M          ++       + E     L   V  
Sbjct: 72  EKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVGG 117

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 219
            PI++         +++ L +  D+++ +      +      + + V             
Sbjct: 118 APIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA---------- 161

Query: 220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ 279
                      P   L      +V+     +P+V +   L+ I + +D   L        
Sbjct: 162 ----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAFN 210

Query: 280 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 339
            H+   N+ +   +            +        D L K+ E +    +  L +V+   
Sbjct: 211 -HMQTGNVREITNV-----RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENL 264

Query: 340 KRVEGIISLSDVFRFL 355
           + ++GII+  DV ++ 
Sbjct: 265 R-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 32/227 (14%), Positives = 75/227 (33%), Gaps = 54/227 (23%)

Query: 51  VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 110
           + +A      + +   P+ +D + + + +++  D I                 L      
Sbjct: 103 IDEAIETFLTKNVGGAPIVND-ENQLISLITERDVI---------------RALLDKIDE 146

Query: 111 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG 170
              +                   R ++ A P + LK+VA  +++N    +P++      G
Sbjct: 147 NEVIDDY--------------ITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG 192

Query: 171 SCQEILYLASLSDILKCICRHFK----HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPF 226
               I+   + +D +K +   +      + +   I    +  I              R  
Sbjct: 193 ----II---TSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMK------------RDV 233

Query: 227 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALA 272
              +    L     ++V  D+ ++P+VD+N  +  I +  D+    A
Sbjct: 234 ITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYFA 280

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAK 273
           V  +  A  +    + PT ++  AL  + +     +P+V+  N+ ++ I +  DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 274 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 333
                  +      H+   L     P      +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 334 IVEAGSKRVEGIISLSDVFRFLL 356
           IV   ++ +  +I+  DV R LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 88.3 bits (219), Expect = 4e-20
 Identities = 33/320 (10%), Positives = 94/320 (29%), Gaps = 62/320 (19%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
                L     +  AF  + E G+  + + ++   +  G+L+  D +  +        + 
Sbjct: 28  KNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DSC 82

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
           ++ +L  + IS   +          M           V              ++     +
Sbjct: 83  SQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFGS 126

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 219
           +P++          + + + +  + L       +                        + 
Sbjct: 127 LPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PVK 159

Query: 220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYA 278
                    +     L  A+ L+++     +P++DD++ ++ I +  +    LAK     
Sbjct: 160 VFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKL 219

Query: 279 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 338
                   + + +        +L               +++    +    +  L+I+   
Sbjct: 220 DPDYFYGKVVKDV-----MVTNL-------VTIDELASVNRAAAEMIVKRIGSLLILNKD 267

Query: 339 SKRVEGIISLSDVFRFLLGV 358
           +  + GII+  D+   L  +
Sbjct: 268 NT-IRGIITERDLLIALHHI 286

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 281
                +    +L +A   + + D+ ++PI  D+D L  + +  DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 282 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 341
             E+       +  +A                   + +++  +    VRR+ ++     R
Sbjct: 76  AGELARDSIYYVDANA------------------SIQEMLNVMEEHQVRRVPVISEH--R 115

Query: 342 VEGIISLSDVFRFL 355
           + GI++ +D+ R L
Sbjct: 116 LVGIVTEADIARHL 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHL 282
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI   +        I +
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 74

Query: 283 DE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 340
           +  M            N           +    + PL +V+ ++A   ++ ++I E G  
Sbjct: 75  ERIMT----------RNL----------ITANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 341 RVEGIISLSDVFRFLL 356
           ++ GI +LSD+     
Sbjct: 113 KIVGIFTLSDLLEASR 128

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIH 281
                L     L   + ++   DV+  P+V+  +S  L+ I  R+ +    + +  ++  
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 282 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 340
             +  +   L  G    P          + L S+  LH+         ++ L +   G  
Sbjct: 81  GHQQCLQDILARGCPTEPV--------TLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-- 130

Query: 341 RVEGIISLSDVFRFLLGV 358
           R  G +S  ++ + +  +
Sbjct: 131 RAVGCVSWVEMKKAISNL 148

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE-M 285
           +    ++  A+ ++ +  +  + + DDN + + + S   I    + ++K   ++ +   M
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 345
                               +          +  V   L+  G+ R  +V+    RV GI
Sbjct: 82  R-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGI 121

Query: 346 ISLSDVFRFL 355
           ++L+D+ R+L
Sbjct: 122 VTLTDLSRYL 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 192
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 193 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 252
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 253 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 281
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 288
           ++P+ S+  AL LLV+  V+ +P++DDN +L+ + S  D+  LA D    +   D     
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDL--LALDSISGRSQNDTNLFP 76

Query: 289 QALQLGQDANPSLGFNGQRCQMCLR------------SDPLHKVMERLANPGVRRLVIVE 336
                 +  N       +     +             S  L      L     RRL +V+
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 136

Query: 337 AGSKRVEGIISLSDVFRFLL 356
               ++ GI++  +V R  L
Sbjct: 137 -ADGKLIGILTRGNVVRAAL 155

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 20/132 (15%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
           E  +                           + L   +  +A      + + +    R E
Sbjct: 72  EELLETVRSYRPG------------------EQLFDNLISVAAAKCSVVPLADE-DGRYE 112

Query: 344 GIISLSDVFRFL 355
           G++S   +  FL
Sbjct: 113 GVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 143 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 202
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 203 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 262
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 263 YSRSDI-TALAK 273
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 269
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 270 -ALAKDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANP 327
               +  A  Q  +   M            N            C  +    ++ME +   
Sbjct: 82  AVAGQGAASLQQSVSVAM----------TKNV---------VRCQHNSTTDQLMEIMTGG 122

Query: 328 GVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
             R + + E G  R+ GIIS+ DV +  +
Sbjct: 123 RFRHVPVEENG--RLAGIISIGDVVKARI 149

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDE-MN 286
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+  A    +    + +   M 
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK--RVEG 344
                       P++         C R D +  + + L    +  L +++   K   V G
Sbjct: 89  ----------RMPNITV-------CRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 345 IISLSDVFRFLL 356
            ++ +++ + L+
Sbjct: 132 RVTKTNMTKILV 143

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDIT-ALAK 273
           R  E   RP   L  TA++      L +  V    +   D+    + + S  DI  A+A+
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 274 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 333
                   +   N           +P            L +DP+H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN-----------SP---------ITVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 334 IVEAGSKRVEGIISLSDVFRFLLGV 358
           +V   +  + G++S+ D+      +
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAIL 129

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALA 272
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D + L+ I +  D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 273 KDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 331
            DK      + E M                            ++     M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIM----------TRQV---------AYVDLNNTNEDCMALITEMRVRH 107

Query: 332 LVIVEAGSKRVEGIISLSDVFRFLL 356
           L +++ G  +V G++S+ D+ +  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 25/143 (17%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKD 274
           +    +GR    +     +  A+ L+ +  + ++ +VD +D +  I +  D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 275 KAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 333
           ++     ++E M           A           +    S    + M  +    +R L 
Sbjct: 73  RSSKATRVEEIM----------TAKV---------RYVEPSQSTDECMALMTEHRMRHLP 113

Query: 334 IVEAGSKRVEGIISLSDVFRFLL 356
           +++ G  ++ G+IS+ D+ + ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 11/140 (7%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 288
           +     +   +  +++  V+    V  ++ L+ +     +  ++    +  I  +E+   
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88

Query: 289 QALQLGQD-----------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 337
              +L               +                 PL + ++ + +  ++ + +V+ 
Sbjct: 89  SMKRLIAKNASEIMLDPVYVHM--------------DTPLEEALKLMIDNNIQEMPVVD- 133

Query: 338 GSKRVEGIISLSDVFRFLLG 357
               + G ++  ++   L  
Sbjct: 134 EKGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 192
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 193 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 252
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 253 VDDNDSLLDIYSRSDIT-ALAKDK 275
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 275
            + E        +   A L     ++ + ++ S+ +VD  +  + I +  DI  A+ K K
Sbjct: 5   IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK 63

Query: 276 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVI 334
           +      + M           A+           + +R D P+   +  +    +R L +
Sbjct: 64  SLETKAEEFMT----------ASL----------ITIREDSPITGALALMRQFNIRHLPV 103

Query: 335 VEAGSKRVEGIISLSDVFRFL 355
           V+     ++GIIS+ D+ R +
Sbjct: 104 VD-DKGNLKGIISIRDITRAI 123

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 247
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 248 SSIPIVDDNDSLLDIYSRSDIT 269
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDE--- 284
            +    +  A   +++  +SS+P++DD + ++ I + +DI   L +DK   +  + +   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT 80

Query: 285 ---------MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV 335
                     +I +A++                 M +                + +L +V
Sbjct: 81  KDVITIHEDASILEAIKK----------------MDISGKKEEI---------INQLPVV 115

Query: 336 EAGSKRVEGIISLSDVFRFLL 356
           +  + ++ GIIS  D+ R + 
Sbjct: 116 D-KNNKLVGIISDGDIIRTIS 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 288
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D   L   +  +     + +  
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRD---LLAAQESSLQRSAQGDSL 74

Query: 289 QALQLGQD--------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 340
                  +          P                 L +    +    +  L +V     
Sbjct: 75  AFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVAKD-- 118

Query: 341 RVEGIISLSDVFRFLLGV 358
            + GII+ SD     + +
Sbjct: 119 VLVGIITDSDFVTIAINL 136

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 287
           +  TASL   L   V+    S  +V +    + I +  D+  A+A+    A++ + E+  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKVWEVME 72

Query: 288 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 347
              + +   A                   + +  E++    V RL++ E     + G+IS
Sbjct: 73  RDLVTISPRA------------------TIKEAAEKMVKNVVWRLLVEEDD--EIIGVIS 112

Query: 348 LSDVFRFLLG 357
            +D+ R  + 
Sbjct: 113 ATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 254 DDNDSLLDIYSRSDIT-ALAKDK 275
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 228 MLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIHLDEM 285
           + + + ++     ++ +   S  P+V   +S  L+    R D+    ++    Q  +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRS-------DPLHKVMERLANPGVRRLVIVEAG 338
           +I    +      P      +   +   S        P+  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 339 SKRVEGIISLSDVFRFLLGV 358
             R+ GII+  DV + +  +
Sbjct: 149 --RLLGIITKKDVLKHIAQM 166

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 288
           +  +A++   L  + Q   +   + D       + ++ D+     D        +++++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL----LDLDLDSSVFNKVSLP 81

Query: 289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 348
                                     D +   +          L +V+    R++G +SL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 349 SDVFRFLL 356
            D    L+
Sbjct: 122 HDFLEALI 129

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM-- 285
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K   +   + M  
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE---EIMTR 70

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 345
           N+  A +                      +P+  V  +++   +  + +V+   +RV GI
Sbjct: 71  NVITAHE---------------------DEPVDHVAIKMSKYNISGVPVVD-DYRRVVGI 108

Query: 346 ISLSDVFRFLLG 357
           ++  D+ R   G
Sbjct: 109 VTSEDISRLFGG 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 54/409 (13%), Positives = 114/409 (27%), Gaps = 121/409 (29%)

Query: 2   MLLCVRKVL-HNTQRLIYSFLVIVYLHSCPHIQ-YTSSFLTQ------VTALDVNLAVKQ 53
                + +L       + +F        C  +Q    S L++      + + D      +
Sbjct: 14  HQYQYKDILSVFEDAFVDNF-------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 54  AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT--NGSNLTEEELETHTISA 111
            F  L  +   MV        +FV  +  +++  ++  + T     ++            
Sbjct: 67  LFWTLLSKQEEMVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 112 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ--NKVATVPIIHSTGPA 169
           +     Q+  K  +        R      PY  L++ AL  L+    V    +I   G  
Sbjct: 120 YNDN--QVFAKYNV-------SRL----QPYLKLRQ-ALLELRPAKNV----LID--GVL 159

Query: 170 GS---------CQ----------EILYL--------ASLSDILKCICRHFKHSSSSLPIL 202
           GS         C           +I +L         ++ ++L+ +      + +S    
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-- 217

Query: 203 QQPVSSIQLGTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 260
               S+I+L     RI             +P  +      LLV  +V +    +      
Sbjct: 218 -DHSSNIKL-----RIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNA----F 262

Query: 261 DIYSR-------SDITALAKDKAYAQIHLDEMNI----HQALQL-----GQDAN--PSLG 302
           ++  +         +T          I LD  ++     +   L            P   
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320

Query: 303 FNGQRCQMCLRSDPLHKVM--ERLANPGVRRLVIVEAGSKRVEGIISLS 349
                 ++   + P    +  E + +              ++  II  S
Sbjct: 321 ------EVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 42/238 (17%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
           R +      D+LK+ A  +L+     V ++ S G      + + + ++ DI++      +
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------KPVGILTVGDIIRRYFAKSE 121

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                                   I     R  +++     L +AL  L+ ++  ++P+V
Sbjct: 122 KYKGV------------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 254 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313
           D   +L+ I   +D+  L   +    +   E+      +   +++P+L F     Q+  +
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 314 ---------------SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
                             +H+V  ++A   + +L ++      + G+I   D+ + L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 42  VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 101
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 102 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 161
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 162 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 204
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 205 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 264
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 265 RSDIT-ALAKDKA 276
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 30/131 (22%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM--- 285
           +   A+   AL L  +  V S P+V+    L+ I S   I  +  D    +  L  +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPD----EEQLAMLVKR 68

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 345
           ++    +                     +D L K  + +     RR+V+V+    +  GI
Sbjct: 69  DVPVVKE---------------------NDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGI 106

Query: 346 ISLSDVFRFLL 356
           +++ D+ R   
Sbjct: 107 LTVGDIIRRYF 117

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 287
           ++    L  AL +LV++  S+IP++D    L  + S + I   +   +      L+EM +
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV 89

Query: 288 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 347
            Q +   +   P L             D   K +E   +      +         EGI++
Sbjct: 90  EQVM---KQDIPVLKLE----------DSFAKALEMTID---HPFICAVNEDGYFEGILT 133

Query: 348 LSDVFRFL 355
              + + L
Sbjct: 134 RRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 32/153 (20%)

Query: 40  TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 99
            +V  + +   ++ A  VL + G   +P+ D    +  G++S      IL  +      L
Sbjct: 25  EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILDGI------L 74

Query: 100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 159
             E +E   +   KV ++       M        + +      DS  +     + +    
Sbjct: 75  GLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALEMTIDHPF-- 118

Query: 160 VPIIHSTGPAGSCQEILYLASLSDILKCICRHF 192
           +  ++  G          + +   ILK + +  
Sbjct: 119 ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 192
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 193 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 252
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 253 VDDNDSLLDIYSRSDI 268
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 288
           ++P   L  AL +L +   S+IP++D +  L  + S + +  +       +I  + +   
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAILGLERIEFERLETM 83

Query: 289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 348
           +  ++     P L  +          D L K +  + N      V VE       GI + 
Sbjct: 84  KVEEVMNRNIPRLRLD----------DSLMKAVGLIVN---HPFVCVENDDGYFAGIFTR 130

Query: 349 SDVFRFL 355
            +V + L
Sbjct: 131 REVLKQL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 227 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM 285
           A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      LD++
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 345
            + + +       P L  N          DP+ K    + N      V VE   +  EGI
Sbjct: 87  TVEEVM---LTDIPRLHIN----------DPIMKGFGMVIN---NGFVCVENDEQVFEGI 130

Query: 346 ISLSDVFRFL 355
            +   V + L
Sbjct: 131 FTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 141 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 200
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 201 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 260
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 261 DIYSRSDI 268
            I++R  +
Sbjct: 129 GIFTRRVV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 21/92 (22%), Positives = 36/92 (39%)

Query: 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 275
            ++ +      A L P  SL  A  ++   ++ SIP+ D N+ LL + S S+ITA   D 
Sbjct: 7   LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI 66

Query: 276 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQR 307
             + I          +     A        ++
Sbjct: 67  WDSNILAKSATSLDNILDTLSAEAQNINEERK 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.92
3ddj_A	296	CBS domain-containing protein; structural genomics	99.9
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.88
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.87
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.85
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.82
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.82
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.81
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.8
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.8
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.8
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.79
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.79
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.78
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.78
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.78
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.78
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.78
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.78
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.78
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.77
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.77
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.77
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.77
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.77
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.77
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.77
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.77
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.77
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.76
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.75
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.75
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.75
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.75
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.75
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.74
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.73
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.73
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.72
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.72
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.71
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.71
4esy_A	170	CBS domain containing membrane protein; structural	99.71
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.7
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.69
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.69
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.69
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.69
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.69
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.69
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.65
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.65
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.64
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.64
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.64
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.63
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.63
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.63
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.63
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.63
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.63
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.63
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.63
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.62
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.62
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.62
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.61
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.61
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.61
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.6
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.6
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.6
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.6
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.59
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.59
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.59
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.58
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.57
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.56
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.56
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.55
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.55
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.55
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.54
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.53
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.5
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.44
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.42
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.42
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.41
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.38
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.37
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.35
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.3
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.3
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.29
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.29
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.25
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.22
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.2
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.2
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.19
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.19
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.99
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.97
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.83
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.76
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.61

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=8.6e-41  Score=310.92  Aligned_cols=309  Identities=22%  Similarity=0.382  Sum_probs=243.3

Q ss_pred             hhchhhHHHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHH
Q 018309            9 VLHNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI   88 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~   88 (358)
                      +-+..+..+...++||+.++|||+||   .+.++++++.++|+.+|++.|.++++.++||||++.++++|++|..|++.+
T Consensus        12 ~~~~~~~~~~~i~~~l~~~~~~d~m~---~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~   88 (323)
T 3t4n_C           12 VSIEQQLAVESIRKFLNSKTSYDVLP---VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV   88 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSC---SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCchHhhCC---CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHH
Confidence            33444558888899999999999997   558999999999999999999999999999999887899999999999997


Q ss_pred             HHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCC
Q 018309           89 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP  168 (358)
Q Consensus        89 l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~  168 (358)
                      +.+++..+...  +.++......+.+......          .|.++++++++++++.+|++.|.+++++++||+|++..
T Consensus        89 l~~~~~~~~~~--~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~  156 (323)
T 3t4n_C           89 IQYYFSNPDKF--ELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE  156 (323)
T ss_dssp             HHHHHHCGGGG--GGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTT
T ss_pred             HHHHHcCcchh--HHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCC
Confidence            76665433221  3444554555555544433          57889999999999999999999999999999986332


Q ss_pred             CCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCC
Q 018309          169 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS  248 (358)
Q Consensus       169 ~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~  248 (358)
                      .+ ..+++|++|.+|+++++..+...    ......+++++.++         |.++++++.+++++.+|++.|.+++++
T Consensus       157 ~~-~~~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~  222 (323)
T 3t4n_C          157 TH-REIVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVS  222 (323)
T ss_dssp             TC-CEEEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             CC-ccceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCC
Confidence            22 11399999999999998766533    11223343333211         677899999999999999999999999


Q ss_pred             EEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCC
Q 018309          249 SIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPG  328 (358)
Q Consensus       249 ~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~  328 (358)
                      ++||+|++|+++|++|.+|+++.+..+.+..+   +.++.+++....       -..+++++|++++++.+|++.|.+++
T Consensus       223 ~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~  292 (323)
T 3t4n_C          223 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKAR  292 (323)
T ss_dssp             EEEEECTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSC-------TTCCCCEEECTTCBHHHHHHHHHHSC
T ss_pred             EEEEECCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhcc-------ccCCCCEEECCCCCHHHHHHHHHHhC
Confidence            99999999999999999999998765543333   467888553211       00126899999999999999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          329 VRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       329 ~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ++++||+| ++|+++|+||.+||++++++
T Consensus       293 ~~~l~Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          293 VHRFFVVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            99999999 47999999999999999975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=2.9e-35  Score=274.82  Aligned_cols=302  Identities=21%  Similarity=0.402  Sum_probs=231.0

Q ss_pred             hHHHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhc
Q 018309           14 QRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG   93 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~   93 (358)
                      +..+..+++|+...+|+|+|+   .+.++++++.++|+.+|++.|.++++.++||+|++.++++|+++..|++.++...+
T Consensus         9 ~~~~~~~~~~l~~~~v~dim~---~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            9 KGALKEIQAFIRSRTSYDVLP---TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHSBGGGGSC---SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhhhCC---CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            346777778888999999996   34689999999999999999999999999999987789999999999998665432


Q ss_pred             c---CCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCc--eEeCCCCCHHHHHHHHhhCCcceEEEEecCCC
Q 018309           94 T---NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGP  168 (358)
Q Consensus        94 ~---~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~--v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~  168 (358)
                      .   .+..  .+.+....+..+.+....            +|..++  +++.+++++.+|++.|.+++++++||+|++..
T Consensus        86 ~~~~~~~~--~~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~  151 (334)
T 2qrd_G           86 QSSSFPEA--IAEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE  151 (334)
T ss_dssp             HHCSCGGG--GGGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETT
T ss_pred             hccCCccH--HHHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCC
Confidence            2   1110  122334445555443322            345566  89999999999999999999999999975211


Q ss_pred             CCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCC
Q 018309          169 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS  248 (358)
Q Consensus       169 ~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~  248 (358)
                      .+ ...++|++|.+|+++++......    ......+++++         ..+|.+++.++.+++++.+|++.|.+++++
T Consensus       152 ~~-~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~  217 (334)
T 2qrd_G          152 TG-SEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNIS  217 (334)
T ss_dssp             TT-EEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             cC-ccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCc
Confidence            00 01299999999999988754321    01122233222         113778899999999999999999999999


Q ss_pred             EEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCC
Q 018309          249 SIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPG  328 (358)
Q Consensus       249 ~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~  328 (358)
                      ++||+|++|+++|++|.+|++..+..+.+...   +.++.+++.....   .  +  +++++|++++++.+|++.|.+++
T Consensus       218 ~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~~~  287 (334)
T 2qrd_G          218 AVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKHSR  287 (334)
T ss_dssp             EEEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHHSC
T ss_pred             EEEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHHcC
Confidence            99999988999999999999997765433222   4677774421000   0  0  37899999999999999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          329 VRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       329 ~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ++++||+| ++|+++|+||..||++++..
T Consensus       288 ~~~l~Vvd-~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          288 VHRLFVVD-ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CCEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence            99999999 57999999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=2.8e-34  Score=267.73  Aligned_cols=296  Identities=30%  Similarity=0.516  Sum_probs=230.2

Q ss_pred             HHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccC
Q 018309           16 LIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN   95 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~   95 (358)
                      .+..|   |+..+++|+|+   .++++++++.++|+.+|++.|.+++++++||+|.+.++++|+++..|++..+......
T Consensus        27 ~~~~~---l~~~~v~dim~---p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~  100 (330)
T 2v8q_E           27 VYTTF---MKSHRCYDLIP---TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS  100 (330)
T ss_dssp             HHHHH---HHHSBGGGGSC---SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHcCcHhhhcc---CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhc
Confidence            44555   56999999995   3478999999999999999999999999999998768999999999999866543211


Q ss_pred             CCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceE
Q 018309           96 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  175 (358)
Q Consensus        96 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~  175 (358)
                      +. .....+....+..+....            +.+|.++++++++++++.+|++.|.+++++++||+|+  ++|   ++
T Consensus       101 ~~-~~~~~l~~~~~~~~~~~~------------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~  162 (330)
T 2v8q_E          101 AL-VQIYELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NT  162 (330)
T ss_dssp             HT-TTCCCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CE
T ss_pred             cc-cchhHHhhccHHHHHHHH------------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cE
Confidence            10 001223344444443211            2368889999999999999999999999999999963  134   79


Q ss_pred             EEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEc
Q 018309          176 LYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVD  254 (358)
Q Consensus       176 vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd  254 (358)
                      +|++|.+|+++++.......+ ...+...+++++.+          |. +++.++.+++++.++++.|.+++++++||+|
T Consensus       163 ~Givt~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  231 (330)
T 2v8q_E          163 LYILTHKRILKFLKLFITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD  231 (330)
T ss_dssp             EEEECHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC
T ss_pred             EEEEcHHHHHHHHHHHhhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC
Confidence            999999999998876543211 01122333333321          33 5788999999999999999999999999999


Q ss_pred             CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEE
Q 018309          255 DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI  334 (358)
Q Consensus       255 ~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  334 (358)
                      ++|+++|++|.+|++.....+.+..+   +.++.+++..+.       .|.+++++|++++++.+|++.|.+++++++||
T Consensus       232 ~~~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  301 (330)
T 2v8q_E          232 EKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVV  301 (330)
T ss_dssp             TTSBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEE
Confidence            89999999999999986654433222   467888664322       45678999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEehHHHHHHhhc
Q 018309          335 VEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       335 vd~~~~~liGvis~~Dil~~~~~  357 (358)
                      +| ++|+++|+||..||++++..
T Consensus       302 vd-~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          302 VD-EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             EC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             Ec-CCCcEEEEEeHHHHHHHHHh
Confidence            99 47999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=1.6e-33  Score=256.02  Aligned_cols=262  Identities=14%  Similarity=0.284  Sum_probs=205.3

Q ss_pred             ceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhh
Q 018309           40 TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  119 (358)
Q Consensus        40 ~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  119 (358)
                      ++++++++++|+.+|++.|.++++.++||+|++.++++|++|..|++..+.....      ...++.......   ....
T Consensus        12 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~~~---~~~~   82 (280)
T 3kh5_A           12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHERNF---LAAI   82 (280)
T ss_dssp             SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTTCH---HHHT
T ss_pred             CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhccccch---hHHh
Confidence            4799999999999999999999999999999767899999999999975531110      011111100000   0000


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCc
Q 018309          120 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  199 (358)
Q Consensus       120 ~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~  199 (358)
                           ...++.+|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++......     
T Consensus        83 -----~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-----  146 (280)
T 3kh5_A           83 -----NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLDKIDE-----  146 (280)
T ss_dssp             -----TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGGGSCT-----
T ss_pred             -----hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhhcCCC-----
Confidence                 11234478889999999999999999999999999999975   45   899999999999976543211     


Q ss_pred             ccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-c
Q 018309          200 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-A  278 (358)
Q Consensus       200 ~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~  278 (358)
                         .            ..++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|++..+..+.. .
T Consensus       147 ---~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~  210 (280)
T 3kh5_A          147 ---N------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFN  210 (280)
T ss_dssp             ---T------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHH
T ss_pred             ---C------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhh
Confidence               1            13455688889999999999999999999999999999 68999999999999987653221 1


Q ss_pred             ccc------cccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 018309          279 QIH------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  352 (358)
Q Consensus       279 ~l~------~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil  352 (358)
                      .+.      ..+.++.+             +|.+++++|++++++.+|++.|.+++++++||+| ++|+++|+||.+||+
T Consensus       211 ~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Givt~~dil  276 (280)
T 3kh5_A          211 HMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIKGIITEKDVL  276 (280)
T ss_dssp             HHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEEEEEEHHHHG
T ss_pred             hhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEEEEEeHHHHH
Confidence            000      01234555             7778899999999999999999999999999999 578999999999999


Q ss_pred             HHhh
Q 018309          353 RFLL  356 (358)
Q Consensus       353 ~~~~  356 (358)
                      +++.
T Consensus       277 ~~la  280 (280)
T 3kh5_A          277 KYFA  280 (280)
T ss_dssp             GGGC
T ss_pred             HhhC
Confidence            9863

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=8.6e-33  Score=253.74  Aligned_cols=262  Identities=10%  Similarity=0.089  Sum_probs=207.0

Q ss_pred             cccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 018309           28 SCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  107 (358)
Q Consensus        28 ~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~  107 (358)
                      ++.|+|.     ++++++++++|+.+|++.|.++++.++||+|   ++++|++|..|++..+.....    .      ..
T Consensus        21 ~V~dim~-----~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~----~------~~   82 (296)
T 3ddj_A           21 NIETLMI-----KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCK----D------SC   82 (296)
T ss_dssp             SGGGTCE-----ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------C
T ss_pred             CHHHhcc-----CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhccccc----c------cc
Confidence            3557763     4789999999999999999999999999998   799999999999975431110    0      00


Q ss_pred             chHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHH
Q 018309          108 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  187 (358)
Q Consensus       108 ~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~  187 (358)
                      ....+....        ...++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|++++
T Consensus        83 ~~~~~~~~~--------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~  148 (296)
T 3ddj_A           83 SQGDLYHIS--------TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLL  148 (296)
T ss_dssp             CHHHHHHHH--------TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGG
T ss_pred             cchhhHHHh--------cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHh
Confidence            011111000        11233478889999999999999999999999999999965   45   79999999999875


Q ss_pred             HHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHH
Q 018309          188 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSD  267 (358)
Q Consensus       188 l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~d  267 (358)
                      +....         ..            ..++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|
T Consensus       149 ~~~~~---------~~------------~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~d  207 (296)
T 3ddj_A          149 YKDLD---------EI------------FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN  207 (296)
T ss_dssp             GGGSC---------CC------------CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred             hhccc---------cc------------ccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHH
Confidence            42211         11            2455668888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccccc---cccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEE
Q 018309          268 ITALAKDKAYAQIH---LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG  344 (358)
Q Consensus       268 l~~~~~~~~~~~l~---~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liG  344 (358)
                      ++..+... +..+.   ..+.++.+             +|.+++++|++++++.+|++.|.+++++++||+| ++|+++|
T Consensus       208 l~~~~~~~-~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~G  272 (296)
T 3ddj_A          208 AIKQLAKA-VDKLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRG  272 (296)
T ss_dssp             HHHHHHHH-HHHTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEE
T ss_pred             HHHHHHHH-HhhcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEE
Confidence            99876522 11110   11345565             7777899999999999999999999999999999 4799999


Q ss_pred             EEehHHHHHHhhc
Q 018309          345 IISLSDVFRFLLG  357 (358)
Q Consensus       345 vis~~Dil~~~~~  357 (358)
                      +||+.||++++..
T Consensus       273 iit~~Dil~~l~~  285 (296)
T 3ddj_A          273 IITERDLLIALHH  285 (296)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             EEcHHHHHHHHHH
Confidence            9999999999863

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=1.1e-30  Score=237.75  Aligned_cols=257  Identities=16%  Similarity=0.242  Sum_probs=179.1

Q ss_pred             ceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhh
Q 018309           40 TQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  119 (358)
Q Consensus        40 ~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  119 (358)
                      ++++++++++|+.+|++.|.++++.++||+|+ .++++|+++..|++..+.       +        ..           
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~-------~--------~~-----------   61 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD-------E--------EQ-----------   61 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----------------------------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhc-------c--------CC-----------
Confidence            46788999999999999999999999999986 479999999999774221       0        00           


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHH-HHHhhcccCCCC
Q 018309          120 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSS  198 (358)
Q Consensus       120 ~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~-~l~~~~~~~~~~  198 (358)
                              ++.+|.++++++++++++.+|++.|.+++.+++||+|+   +|   +++|++|..|+++ ++....      
T Consensus        62 --------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~------  121 (282)
T 2yzq_A           62 --------LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAKSE------  121 (282)
T ss_dssp             ----------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCS------
T ss_pred             --------HHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhccC------
Confidence                    11256677899999999999999999999999999975   35   7999999999988 554210      


Q ss_pred             cccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH------HHH
Q 018309          199 LPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT------ALA  272 (358)
Q Consensus       199 ~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~------~~~  272 (358)
                       ....            ..++++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|++      +..
T Consensus       122 -~~~~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~  188 (282)
T 2yzq_A          122 -KYKG------------VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIM  188 (282)
T ss_dssp             -GGGG------------CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--
T ss_pred             -Cccc------------CcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhh
Confidence             0011            234566888899999999999999999999999999999889999999999998      322


Q ss_pred             hccc--ccc-ccc-ccccHHHHHhc--CCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEE
Q 018309          273 KDKA--YAQ-IHL-DEMNIHQALQL--GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  345 (358)
Q Consensus       273 ~~~~--~~~-l~~-~~~~v~~~l~~--~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGv  345 (358)
                      ....  ... ..+ .......+...  ......+. ++|.+++++|++++++.+|++.|.+++++++||+| ++|+++|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGi  267 (282)
T 2yzq_A          189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGL  267 (282)
T ss_dssp             ------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEE
T ss_pred             ccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEE
Confidence            1000  000 000 00000000000  00011222 28889999999999999999999999999999999 47899999


Q ss_pred             EehHHHHHHhhc
Q 018309          346 ISLSDVFRFLLG  357 (358)
Q Consensus       346 is~~Dil~~~~~  357 (358)
                      ||++||++++..
T Consensus       268 it~~Dil~~~~~  279 (282)
T 2yzq_A          268 IRDFDLLKVLVK  279 (282)
T ss_dssp             EEHHHHGGGGCC
T ss_pred             EeHHHHHHHHHh
Confidence            999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.92  E-value=2.6e-24  Score=195.14  Aligned_cols=195  Identities=18%  Similarity=0.330  Sum_probs=157.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccc-ccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ-PVSSI  209 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~-~v~~l  209 (358)
                      +|.++++++++++|+.+|++.|.+++++++||+++  ++|   +++|++|.+|+++++......     ..... ....+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~--~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA--GNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECT--TTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEEC--CCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            57789999999999999999999999999999963  235   899999999999976432211     00000 00000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  289 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~  289 (358)
                       +.....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+......     ..++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence             11112467788999999999999999999999999999999999999999999999999876543211     224444


Q ss_pred             HHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          290 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                   +|.+++.++++++++.++++.|.+++++++||++  +|+++|+||..|+++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         7777899999999999999999999999999996  489999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.90  E-value=5.9e-24  Score=194.76  Aligned_cols=192  Identities=18%  Similarity=0.214  Sum_probs=157.6

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309          128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  207 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~  207 (358)
                      ++++|.++++++++++++.+|++.|.+++++++||++     |   +++|++|..|+++++......        .....
T Consensus        22 V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~~~   85 (296)
T 3ddj_A           22 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCSQG   85 (296)
T ss_dssp             GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CCHH
T ss_pred             HHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------cccch
Confidence            3457888999999999999999999999999999994     4   799999999999966422111        00111


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccH
Q 018309          208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNI  287 (358)
Q Consensus       208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v  287 (358)
                      .+ +.....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+....      ...++
T Consensus        86 ~~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~~v  158 (296)
T 3ddj_A           86 DL-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIFPV  158 (296)
T ss_dssp             HH-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCCBH
T ss_pred             hh-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccccH
Confidence            10 001123577779889999999999999999999999999999999999999999999998654221      13577


Q ss_pred             HHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          288 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       288 ~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      .+             +|.+++.++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       159 ~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          159 KV-------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HH-------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             HH-------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            77             6777899999999999999999999999999999 4799999999999998864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.88  E-value=2.1e-22  Score=187.40  Aligned_cols=205  Identities=18%  Similarity=0.243  Sum_probs=158.7

Q ss_pred             CC--CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PC--PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~--~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|  ..+++++++++++.+|++.|.+++++++||+++  +.+   +++|+++..|++.++.........    ....+..
T Consensus        40 im~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~~----~~~~l~~  110 (330)
T 2v8q_E           40 LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALV----QIYELEE  110 (330)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTT----TCCCGGG
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhcccc----chhHHhh
Confidence            67  778999999999999999999999999999975  224   799999999999987654311000    0011122


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccc--ccccccc
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDEM  285 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~~~--~l~~~~~  285 (358)
                      ..+..+...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++..+......  ...+...
T Consensus       111 ~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~  190 (330)
T 2v8q_E          111 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSK  190 (330)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGS
T ss_pred             ccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcC
Confidence            22233334556778999999999999999999999999999999998 89999999999999866432110  0011123


Q ss_pred             cHHHHHhcCCCCCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          286 NIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       286 ~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      ++.+..           +|. +++.++++++++.++++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       191 ~v~~~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          191 SLEELQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             BHHHHT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred             CHHHhc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence            444411           344 6789999999999999999999999999999 4799999999999998764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.88  E-value=4.8e-22  Score=184.30  Aligned_cols=199  Identities=17%  Similarity=0.256  Sum_probs=151.2

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      ..++++++.+.|+.+|++.|.+++++++||+|+  +.+   +++|++|..|++.++.........     ...+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~~-----~~~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPDK-----FELVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGGG-----GGGGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcch-----hHHHHHHHHH
Confidence            456889999999999999999999999999974  233   899999999999987654322110     0011111100


Q ss_pred             ccc--ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhcccccccccccc
Q 018309          213 TWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM  285 (358)
Q Consensus       213 ~~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~-----liGiis~~dl~~~~~~~~~~~l~~~~~  285 (358)
                      .+.  .++.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|++..+...... ....+.
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            000  1234557788999999999999999999999999999998775     99999999999866432211 112234


Q ss_pred             cHHHHHhcCCCCCCCccc---CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          286 NIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       286 ~v~~~l~~~~~~~~~~~~---~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      ++.+             +   |.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       188 ~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          188 PIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             BGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHH
T ss_pred             cHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHh
Confidence            5555             4   778899999999999999999999999999999 5799999999999999864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=4.8e-22  Score=180.50  Aligned_cols=173  Identities=16%  Similarity=0.235  Sum_probs=130.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|+++..|+++.+.             +.      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~~------   60 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EE------   60 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------cC------
Confidence            46678899999999999999999999999999974   45   8999999999986321             12      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccccccHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQ  289 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~-~~~~~~~~~l~~~~~~v~~  289 (358)
                            .++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|++. .+..+.. .   .+.++.+
T Consensus        61 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~-~---~~~~v~~  130 (282)
T 2yzq_A           61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK-Y---KGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG-G---GGCBSTT
T ss_pred             ------CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC-c---ccCcHHH
Confidence                  344557777899999999999999999999999999998899999999999998 6543210 0   1233343


Q ss_pred             HHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 018309          290 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  352 (358)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil  352 (358)
                                   +|..+++++++++++.++++.|.+++++++||+| ++|+++|+||..|++
T Consensus       131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL  179 (282)
T ss_dssp             -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred             -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence                         7777899999999999999999999999999999 479999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=3.9e-21  Score=178.95  Aligned_cols=207  Identities=14%  Similarity=0.147  Sum_probs=151.2

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|.  .+++++++++++.+|++.|.+++++++||+++  +.+   +++|+++.+|++.++......... .. ....+..
T Consensus        27 im~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~-~~~~~~~   99 (334)
T 2qrd_G           27 VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-PE-AIAEIDK   99 (334)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-GG-GGGGGGS
T ss_pred             hCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC-cc-HHHHHhh
Confidence            454  45789999999999999999999999999975  224   899999999999877543221000 00 0001111


Q ss_pred             cccccccccccccCCCCc--eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhcccccccc
Q 018309          209 IQLGTWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIH  281 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~-----liGiis~~dl~~~~~~~~~~~l~  281 (358)
                      ..+..+....+++|..++  +++.+++++.++++.|.+++.+++||+|++|.     ++|++|.+|++..+..+.. ...
T Consensus       100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~-~~~  178 (334)
T 2qrd_G          100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK-ETA  178 (334)
T ss_dssp             CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG-GGG
T ss_pred             hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc-chh
Confidence            111111111233455566  89999999999999999999999999997654     9999999999986643211 111


Q ss_pred             cccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          282 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       282 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      +...++.+..          .+|.+++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++.
T Consensus       179 ~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          179 MLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred             hhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence            1123444310          03677899999999999999999999999999999 4799999999999999764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.85  E-value=1.1e-21  Score=165.13  Aligned_cols=137  Identities=16%  Similarity=0.256  Sum_probs=105.2

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc---ccccccH---HHH
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI---HLDEMNI---HQA  290 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l---~~~~~~v---~~~  290 (358)
                      +|+++|+++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++..........   .......   ...
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            4677799999999999999999999999999999999999999999999999764321110000   0000000   000


Q ss_pred             HhcCCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          291 LQLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       291 l~~~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ...  ....+. ++|++++++|++++++.+|++.|.+++++++||+|+  |+++|+||.+||+++++.
T Consensus        99 ~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           99 FET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCC
T ss_pred             hcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            000  001112 288899999999999999999999999999999993  899999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.82  E-value=4.3e-20  Score=153.15  Aligned_cols=123  Identities=18%  Similarity=0.275  Sum_probs=101.6

Q ss_pred             cccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          219 GEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       219 ~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      .++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+...........+.++.+       
T Consensus        18 ~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~-------   90 (156)
T 3k6e_A           18 ETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH-------   90 (156)
T ss_dssp             GGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-------
T ss_pred             HHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH-------
Confidence            34454  468999999999999999999999999999999999999999999986654432222222344554       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++.++++++++.+|++.|.++++  +|||| ++|+++|+||++||++++.+
T Consensus        91 ------im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           91 ------MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             ------TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             ------hhcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHHH
Confidence                  888899999999999999999998764  99999 58999999999999999843

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.82  E-value=1.7e-19  Score=147.95  Aligned_cols=119  Identities=16%  Similarity=0.305  Sum_probs=106.3

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.       +.++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            56777987  89999999999999999999999999999987 89999999999998654331       245555    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +| ++++++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     77 7899999999999999999999999999999 57999999999999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.81  E-value=1.6e-19  Score=144.77  Aligned_cols=120  Identities=15%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.      .+.++.+    
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~----   76 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGA----   76 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHH----
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHH----
Confidence            5677788  456789999999999999999999999999987 89999999999998765432      1456777    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +| +++.++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence                     66 4688999999999999999999999999999 57999999999999999976

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.80  E-value=2.3e-19  Score=141.98  Aligned_cols=119  Identities=19%  Similarity=0.372  Sum_probs=105.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+...+..+        ..++.+       
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~-------   66 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEE-------   66 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGG-------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHH-------
Confidence            35677998999999999999999999999999999999999999999999999866532        234555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++.+
T Consensus        67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                  6777899999999999999999999999999999 57999999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.80  E-value=1.1e-19  Score=145.08  Aligned_cols=120  Identities=13%  Similarity=0.369  Sum_probs=102.7

Q ss_pred             cccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+.  ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++..+....      .+.++.+    
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~----   73 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK----   73 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence            456678744  8899999999999999999999999999987 89999999999987553221      1457777    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|. ++.++++++++.+|++.|.+++++++||+| ++|+++|+||+.|+++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 478999999999999999999999999999 58999999999999999875

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.80  E-value=3e-19  Score=143.32  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=104.0

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  ++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++....++..    +...++.+    
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~----   74 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR----   74 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence            3566685  36889999999999999999999999999975 5899999999999987654321    11245565    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +| ++++++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                     55 5789999999999999999999999999999 57999999999999999876

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.79  E-value=8.9e-19  Score=147.56  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=106.5

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.       ..++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5677788  678999999999999999999999999999987 99999999999998765331       345565    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +| ++++++++++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                     77 7899999999999999999999999999999 57999999999999999875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.79  E-value=2.5e-19  Score=143.52  Aligned_cols=118  Identities=14%  Similarity=0.325  Sum_probs=101.8

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++......        +.++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            4666787  668899999999999999999999999999985 8999999999998754321        345555    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|. +++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.|+++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 578999999999999999999999999999 57999999999999999875

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.79  E-value=1.2e-18  Score=138.31  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      ++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|++..+.++..    ..+.++.+        
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~--------   69 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE--------   69 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH--------
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH--------
Confidence            5567888899999999999999999999999999999 8999999999999986654321    12467777        


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                           +|.+++.++++++++.++++.|.+++.+++||+| + |+++|+||..|+++++.+
T Consensus        70 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 -----VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             -----HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred             -----HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                 6777899999999999999999999999999999 5 999999999999998864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.78  E-value=1.2e-18  Score=141.61  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g--~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      .+++++|.+++.++.+++++.+|++.|.+++++++||+|++|  +++|++|.+|++..+..+..     .+.++.+    
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~----   75 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMP----   75 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGG----
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHH----
Confidence            457788999999999999999999999999999999999888  99999999999986643311     1345555    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                               +|.+++.+++++ ++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        76 ---------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           76 ---------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             ---------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             ---------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence                     777889999999 999999999999999999999 4799999999999987754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.78  E-value=2.9e-18  Score=138.58  Aligned_cols=122  Identities=19%  Similarity=0.355  Sum_probs=106.2

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHhcccccccccccccHHHHHhcCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ  295 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl-~~~~~~~~~~~l~~~~~~v~~~l~~~~  295 (358)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+ ...+..+.+     .+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   77 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------   77 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence            5667788889999999999999999999999999999988999999999999 876543221     1456777      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                             +|.+++.++++++++.+|++.|.+++     ++++||+| ++|+++|+||..|+++++.+
T Consensus        78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence                   67778999999999999999999999     99999999 47999999999999998754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.78  E-value=1.1e-18  Score=143.12  Aligned_cols=127  Identities=22%  Similarity=0.350  Sum_probs=104.4

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc---------cccccc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM  285 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~---------l~~~~~  285 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..........         ....+.
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            56777877  7999999999999999999999999999999999999999999986432110000         001124


Q ss_pred             cHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       286 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ++.+             +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++.+
T Consensus        86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            4555             6777889999999999999999999999999999 57999999999999999865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.78  E-value=8.7e-19  Score=144.61  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=104.6

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  292 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVv-d~-~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~  292 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+ |+ +|+++|++|.+|++..+..+.       ..++.+   
T Consensus        21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---   90 (153)
T 3oco_A           21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST---   90 (153)
T ss_dssp             BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred             EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence            45666875  78999999999999999999999999999 65 489999999999998654331       345555   


Q ss_pred             cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                                +| ++++++++++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                      77 7899999999999999999999999999999 57999999999999999875

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.78  E-value=5.9e-19  Score=141.03  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+++...++..     ...++.+       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT-----VKEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC-----TTCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc-----ccCcHHH-------
Confidence            567779999999999999999999999999999999998 999999999999975432211     0133444       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++..
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 57999999999999999864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.78  E-value=3.3e-19  Score=144.20  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=102.2

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  +++.++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++..+..+..     ...++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~-----~~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG-----DSDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSG-----GGCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccC-----CCcCHHH----
Confidence            4566787  568899999999999999999999999999987 899999999999986542111     1345555    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|. +++++++++++.+|++.|.+++++++||+| ++|+++|+||+.|+++++++
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     664 489999999999999999999999999999 58999999999999998864

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.77  E-value=3.8e-18  Score=137.93  Aligned_cols=121  Identities=18%  Similarity=0.357  Sum_probs=105.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  295 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~  295 (358)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++. .+..+.     ....++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHH------
Confidence            567779889999999999999999999999999999998899999999999974 333221     11345555      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                             +|.+++.++++++++.+|++.|.+++++++ |+| ++|+++|+||..||++++.+
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHHC
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHHH
Confidence                   777889999999999999999999999999 999 47999999999999998864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.77  E-value=3.1e-18  Score=142.36  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=105.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc----cccccccHHHHHh
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ  292 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~----l~~~~~~v~~~l~  292 (358)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..........    ......++.+   
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   82 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   82 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence            567779888999999999999999999999999999998899999999999998654211000    0011355666   


Q ss_pred             cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                +|.++++++++++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus        83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                      7778899999999999999999999999999999 5 99999999999999875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.77  E-value=2.6e-18  Score=137.98  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=105.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+...+..+..     .+.++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHH-------
Confidence            56777988899999999999999999999999999999 8999999999999886654311     1345555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                            +|.+++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                  7777899999999999999999999999999999 4799999999999999875

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.77  E-value=3e-18  Score=139.31  Aligned_cols=126  Identities=25%  Similarity=0.464  Sum_probs=101.6

Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 018309          221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  300 (358)
Q Consensus       221 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~  300 (358)
                      +|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+..+.+..   .+.++.+++....     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~~m~~~~-----   87 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND---LSLSVGEALMRRS-----   87 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccccc---CCccHHHHHhcCc-----
Confidence            46678999999999999999999999999999998899999999999998665432211   2467787543210     


Q ss_pred             cccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          301 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       301 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                        .-..++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..||++++..
T Consensus        88 --~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           88 --DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             --cccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence              0001578999999999999999999999999999 47999999999999999864

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.77  E-value=2.5e-18  Score=141.10  Aligned_cols=119  Identities=12%  Similarity=0.242  Sum_probs=105.2

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+..+..    +.+.++.+     
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-----   99 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD-----   99 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence            57778988  89999999999999999999999999999999999999999999987654321    22567787     


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                              +|.+++.++++++++.+|++.|.+++++++||+|+  ++++|+||..||+++
T Consensus       100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~a  149 (149)
T 3k2v_A          100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLRA  149 (149)
T ss_dssp             --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTCC
T ss_pred             --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhcC
Confidence                    67778899999999999999999999999999994  499999999999863

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=1.6e-18  Score=144.83  Aligned_cols=123  Identities=20%  Similarity=0.347  Sum_probs=106.4

Q ss_pred             cccccCCC---CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+   +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+..+....   .+.++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAAS---LQQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGG---GTSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCcc---ccCCHHH----
Confidence            56677874   6899999999999999999999999999999999999999999998665432111   1355666    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|.++++++++++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                     7778899999999999999999999999999999 5 999999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.77  E-value=3.1e-18  Score=142.19  Aligned_cols=122  Identities=17%  Similarity=0.358  Sum_probs=104.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.....+..    ..+.++.+       
T Consensus        18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-------   85 (159)
T 3fv6_A           18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI-------   85 (159)
T ss_dssp             BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred             CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence            566778874 599999999999999999999999999989999999999999986533211    11456666       


Q ss_pred             CCCCcccCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCC---eEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~---~liGvis~~Dil~~~~~  357 (358)
                            +|.+  +++++++++++.+|++.|.+++++++||+|+ +|   +++|+||..||++++..
T Consensus        86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHH
Confidence                  6766  8899999999999999999999999999994 67   99999999999999863

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.77  E-value=8.7e-19  Score=140.83  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=104.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  295 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~  295 (358)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|++. .+..+..    ..+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------   78 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------   78 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence            456678888999999999999999999999999999998899999999999984 4433211    11467777      


Q ss_pred             CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                             +|.+++.++++++++.+|++.|.+++.+++||+| + |+++|+||..||++++.+
T Consensus        79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                   5566889999999999999999999999999999 4 899999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.76  E-value=2.8e-18  Score=140.82  Aligned_cols=125  Identities=21%  Similarity=0.213  Sum_probs=103.8

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-cccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+..... ........++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            4566687  458999999999999999999999999999999999999999999987643211 000111344554    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|.+++.++++++++.+|++.|.++++  +||+| ++|+++|+||..||++++..
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999987  99999 57999999999999998853

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.75  E-value=5.8e-18  Score=136.40  Aligned_cols=122  Identities=11%  Similarity=0.243  Sum_probs=103.7

Q ss_pred             cccccCC---CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.   +++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|++........   ...+.++.+    
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~----   78 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKE----   78 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGG----
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---CcccCCHHH----
Confidence            4566687   7899999999999999999999999999998 8999999999999863322211   111345565    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|.+++.++++++++.+|++.|.+++++++||+| + |+++|+||..|+++++.+
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ---------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ---------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC
T ss_pred             ---------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHHh
Confidence                     7778899999999999999999999999999999 3 899999999999998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.75  E-value=2.2e-18  Score=145.65  Aligned_cols=127  Identities=24%  Similarity=0.347  Sum_probs=102.9

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc--------cc--c----
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY--------AQ--I----  280 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~--------~~--l----  280 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++........        ..  .    
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            45667877  78999999999999999999999999999999999999999999852210000        00  0    


Q ss_pred             ---------ccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHH
Q 018309          281 ---------HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV  351 (358)
Q Consensus       281 ---------~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Di  351 (358)
                               ...+.++.+             +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||
T Consensus        85 ~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~di  150 (180)
T 3sl7_A           85 FNELQKLISKTYGKVVGD-------------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNV  150 (180)
T ss_dssp             HHHHHHHHHTTTTCBHHH-------------HSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHH
T ss_pred             hHHHHHHHhccccccHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHH
Confidence                     001223333             7778899999999999999999999999999999 57999999999999


Q ss_pred             HHHhhc
Q 018309          352 FRFLLG  357 (358)
Q Consensus       352 l~~~~~  357 (358)
                      ++++..
T Consensus       151 l~~~~~  156 (180)
T 3sl7_A          151 VRAALQ  156 (180)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999854

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.75  E-value=7.2e-18  Score=143.49  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=106.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+......   ....++.+       
T Consensus        10 ~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~---~~~~~v~~-------   79 (184)
T 1pvm_A           10 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL-------   79 (184)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG-------
T ss_pred             CHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccC---cccCCHHH-------
Confidence            56677988999999999999999999999999999999889999999999999865421110   11345555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                            +|.+++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        80 ------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           80 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                  7778899999999999999999999999999999 4799999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.75  E-value=9.3e-18  Score=139.61  Aligned_cols=131  Identities=14%  Similarity=0.239  Sum_probs=104.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|+  +|+++|++|..|+......+..........++.+++...
T Consensus        14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~   93 (164)
T 2pfi_A           14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG   93 (164)
T ss_dssp             BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence            566779889999999999999999999999999999996  799999999999998664332111111235677755321


Q ss_pred             CCCCCCcccCCcc-ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          295 QDANPSLGFNGQR-CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       295 ~~~~~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                              ....+ +.++++++++.+|++.|.+++++++||+|+  |+++|+||..||++++.+
T Consensus        94 --------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           94 --------CPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             --------CCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred             --------ccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence                    11112 789999999999999999999999999993  899999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.75  E-value=1.6e-17  Score=137.59  Aligned_cols=125  Identities=9%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHhcc------c---cc--cccccc
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDK------A---YA--QIHLDE  284 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~-vpVvd~~g~liGiis~~dl~~~~~~~------~---~~--~l~~~~  284 (358)
                      +++++|.++++++.+++++.+|++.|.++++++ +||+|++ +++|++|.+|++......      .   +.  .....+
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            567789999999999999999999999999999 9999987 999999999999864311      0   00  001123


Q ss_pred             ccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          285 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       285 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .++.+             +|.+ ++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++.+
T Consensus        96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence            45555             7777 89999999999999999999999999999 47999999999999998864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.75  E-value=1.1e-17  Score=138.31  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=103.8

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~-~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.....+. +....+...++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            46667875  7889999999999999999999999999998899999999999998654321 1000111344444    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|.+++.++++++++.+|++.|.++++  +||+| ++|+++|+||..||++++..
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999988  99999 47999999999999998753

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.74  E-value=9.7e-18  Score=139.09  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=104.7

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~-~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++....... +........++.+    
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----   90 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   90 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence            45666877  7899999999999999999999999999999999999999999998764321 1111122456777    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                               +|.+++.++++++++.+|++.|.++++  +||+| ++|+++|+||..||++++.
T Consensus        91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                     677789999999999999999999987  99999 4799999999999999875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.73  E-value=1.6e-17  Score=137.45  Aligned_cols=122  Identities=14%  Similarity=0.280  Sum_probs=104.4

Q ss_pred             cccccCC------CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          217 RIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       217 ~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      +++++|.      +++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|++..+......   ..+.++.+ 
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~-   82 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRVEE-   82 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBHHH-
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCHHH-
Confidence            4566676      5579999999999999999999999999965 89999999999999866443221   12567787 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                                  +|.+++.++++++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        83 ------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           83 ------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             ------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             ------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                        6777899999999999999999999999999999 3 999999999999999864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.73  E-value=3e-17  Score=142.14  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=104.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|+++++++.+++++.+|++.|.++   +++.+||+|++|+++|++|.+|++...          .+.++.+    
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~----  120 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS----  120 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG----
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH----
Confidence            57778999999999999999999999987   899999999999999999999987420          1345666    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                               +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..|+++.+.
T Consensus       121 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ---------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ---------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                     8888999999999999999999999999999999 5899999999999999874

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.72  E-value=2.7e-17  Score=138.58  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=100.9

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|+  ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.       ..++.     
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~-----  104 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN-----  104 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence            4566685  468899999999999999999999999999986 89999999999998654321       12222     


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                                |.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus       105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      224688999999999999999999999999999 57999999999999999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.72  E-value=1.1e-17  Score=138.58  Aligned_cols=114  Identities=11%  Similarity=0.288  Sum_probs=99.9

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-cEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND-SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g-~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|+++ +++|++|.+|++.....+       .+.++.+    
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~----  107 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS----  107 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence            56777876  688999999999999999999999999999874 999999999998854332       1467777    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  352 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil  352 (358)
                               +|. +++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||+
T Consensus       108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                     564 488999999999999999999999999999 579999999999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.72  E-value=4.9e-17  Score=140.78  Aligned_cols=161  Identities=16%  Similarity=0.102  Sum_probs=123.1

Q ss_pred             eeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC---
Q 018309           79 VLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---  155 (358)
Q Consensus        79 ilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~---  155 (358)
                      -++..|.++++..+..   ....+.+..+.-.+...+...+.  |..+.+|.+|.++++++++++|+.+|++.|.++   
T Consensus        12 ~m~~dd~~dll~~l~~---~~~~~~l~~l~~~e~~~i~~~l~--~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~   86 (205)
T 3kxr_A           12 QLSPEDLIEWSDYLPE---SFTDRALAQMGERQRQRFELYDQ--YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELD   86 (205)
T ss_dssp             GSCHHHHHHTTTTSCH---HHHHHHHHHSCHHHHHHHHHHHH--SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCT
T ss_pred             cCCHHHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhC--CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCcc
Confidence            3455666665543311   11112233333334444444444  778888999999999999999999999999987   


Q ss_pred             CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCH
Q 018309          156 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL  235 (358)
Q Consensus       156 ~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l  235 (358)
                      +++.+||+|+   .|   +++|+++.+|++..             ...            ..++++|.++++++.+++++
T Consensus        87 ~~~~~~Vvd~---~~---~lvGivt~~dll~~-------------~~~------------~~v~~im~~~~~~v~~~~~l  135 (205)
T 3kxr_A           87 CNDNLFIVDE---AD---KYLGTVRRYDIFKH-------------EPH------------EPLISLLSEDSRALTANTTL  135 (205)
T ss_dssp             TCCEEEEECT---TC---BEEEEEEHHHHTTS-------------CTT------------SBGGGGCCSSCCCEETTSCH
T ss_pred             CeeEEEEEcC---CC---eEEEEEEHHHHHhC-------------CCc------------chHHHHhcCCCeEECCCCCH
Confidence            8999999975   45   89999999998651             011            23556698899999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          236 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       236 ~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                      .+|++.|.+++++.+||+|++|+++|+||..|++..+.+.
T Consensus       136 ~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          136 LDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             HHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999977643

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.71  E-value=7.6e-17  Score=143.46  Aligned_cols=199  Identities=11%  Similarity=0.071  Sum_probs=130.8

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCC------CCc---
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS------SSL---  199 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~------~~~---  199 (358)
                      +.+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++........      ...   
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A           10 EDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             GGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            3478889999999999999999999999999999975   45   89999999999998754321100      000   


Q ss_pred             -----c------cccccccccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC----------
Q 018309          200 -----P------ILQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND----------  257 (358)
Q Consensus       200 -----~------~~~~~v~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g----------  257 (358)
                           .      ........+.++.. ...+.+.+....+.+..+  ..++.+.+.+.+++++++.+...          
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                 0      00000011111110 122334444444445444  48889999999999998875321          


Q ss_pred             --cEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEE
Q 018309          258 --SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVI  334 (358)
Q Consensus       258 --~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~V  334 (358)
                        .+-.+.|..|.......-      ....++.+             +|. +++.++++++++.+|++.|.+++++++||
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pV  222 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPV  222 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEE
T ss_pred             HcCCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEEE
Confidence              223333333333221110      01244555             787 88999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEehHHHHHHh
Q 018309          335 VEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       335 vd~~~~~liGvis~~Dil~~~  355 (358)
                      +| ++|+++|+||..|++++.
T Consensus       223 vd-~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          223 ID-ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             EC-TTCBEEEEEECC------
T ss_pred             Ec-CCCeEEEEEEHHHhhchh
Confidence            99 479999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=2.6e-17  Score=143.47  Aligned_cols=120  Identities=14%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  292 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~  292 (358)
                      .|..+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+.....          +.++.+   
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~---   76 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN---   76 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG---
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH---
Confidence            4556788889999999999999999999999999999999998899999999999876321          234555   


Q ss_pred             cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus        77 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 ----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             ----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                      7778899999999999999999999999999999 4799999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.71  E-value=3e-17  Score=137.82  Aligned_cols=136  Identities=20%  Similarity=0.295  Sum_probs=102.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCC---cccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS---LPILQQPV  206 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~---~~~~~~~v  206 (358)
                      ++|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++.+..........   ........
T Consensus        22 diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T 4esy_A           22 DILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NG---HLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEV   95 (170)
T ss_dssp             GGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TS---CEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHH
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---Cc---cEEEEEEHHHHHHHHhhccccchhhhhhhccchhhH
Confidence            479999999999999999999999999999999975   56   8999999999987442211000000   00000000


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      ..+.-......++++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus        96 ~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           96 EHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             HhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            000000111356788999999999999999999999999999999998 69999999999999854

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.70  E-value=6.2e-17  Score=137.37  Aligned_cols=125  Identities=14%  Similarity=0.234  Sum_probs=102.6

Q ss_pred             cccccCCCC----ceEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccc-------
Q 018309          217 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIH-------  281 (358)
Q Consensus       217 ~v~~~m~~~----~~~v--~~~~~l~~a~~~m~~~~~~~vpVv--d~~g~liGiis~~dl~~~~~~~~~~~l~-------  281 (358)
                      +++++|.+.    ++++  .+++++.+|++.|.+++++++||+  |++|+++|+||..|++..+.........       
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            566678776    7888  999999999999999999999999  7889999999999999865432100000       


Q ss_pred             -------------cccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEeh
Q 018309          282 -------------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL  348 (358)
Q Consensus       282 -------------~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~  348 (358)
                                   ....++.+             +|.++++++++++++.+|++.|.+++++++||+|  +|+++|+||.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~-------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~  156 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRN-------------ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITK  156 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGG-------------GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEH
T ss_pred             ecccCCcccccccccCccHHH-------------hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEH
Confidence                         00122222             7778899999999999999999999999999999  3999999999


Q ss_pred             HHHHHHhh
Q 018309          349 SDVFRFLL  356 (358)
Q Consensus       349 ~Dil~~~~  356 (358)
                      .||++++.
T Consensus       157 ~dll~~l~  164 (185)
T 2j9l_A          157 KDVLKHIA  164 (185)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.70  E-value=6.4e-17  Score=133.93  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=98.2

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      ..+++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++.......   .....         
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~---------   85 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLSQ---EIMAD---------   85 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCCH---HHHTT---------
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhccccc---ccccc---------
Confidence            467899999999999999999999999999964   45   8999999999999876543210   00111         


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                         ..++++|.++++++++++++.+|++.|.++++  +||+|++|+++|+||.+|+++.+.
T Consensus        86 ---~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           86 ---TDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ---SBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence               24566699999999999999999999998764  999999999999999999998764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=1.1e-16  Score=139.45  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=100.3

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.++++++.+++++.+|+++|.+++.+++||+|+   +|   +++|++|..|+.+++             ..     
T Consensus        16 ~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~-------------~~-----   71 (213)
T 1vr9_A           16 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LD-----   71 (213)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TT-----
T ss_pred             HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhc-------------CC-----
Confidence            3468889999999999999999999999999999974   35   899999999987621             11     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHH
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  288 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~  288 (358)
                             ..++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+....         ...
T Consensus        72 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~  135 (213)
T 1vr9_A           72 -------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMD  135 (213)
T ss_dssp             -------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C--
T ss_pred             -------CcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCC
Confidence                   2356668888999999999999999999999999999998899999999999998654221         111


Q ss_pred             HHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEe
Q 018309          289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  336 (358)
Q Consensus       289 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  336 (358)
                      +...       .  +   .+.+.....++.+|.+.|.+++++.++|++
T Consensus       136 ~~~~-------~--l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          136 VPGI-------R--F---SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             ------------------------------------------------
T ss_pred             CCcE-------E--E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            1000       0  0   011223344599999999999999999886

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.69  E-value=2.1e-16  Score=129.41  Aligned_cols=117  Identities=14%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      +.+|.+  +++++++++++.+|++.|.+++++++||+|+  +.|   +++|++|.+|+++++....          ..  
T Consensus        26 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~--   88 (148)
T 3lv9_A           26 REIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KI--   88 (148)
T ss_dssp             GGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CC--
T ss_pred             HHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------Cc--
Confidence            346776  8999999999999999999999999999964  225   7999999999998765331          12  


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                                .++++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus        89 ----------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           89 ----------ELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             ----------CGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             ----------cHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                      345558 78899999999999999999999999999999999999999999998654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.69  E-value=2.8e-16  Score=132.18  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=102.2

Q ss_pred             CCCCCCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccc
Q 018309          127 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  204 (358)
Q Consensus       127 ~~~~~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~  204 (358)
                      .++.+|.  .+++++++++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++++....          . 
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~-  106 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------R-  106 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------C-
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------c-
Confidence            3456788  78899999999999999999999999999964  215   7999999999998654210          1 


Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          205 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       205 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                                 ..++++| ++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       107 -----------~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          107 -----------LELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             -----------CCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             -----------ccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence                       2355568 789999999999999999999999999999999999999999999986653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.69  E-value=3.8e-16  Score=138.86  Aligned_cols=138  Identities=17%  Similarity=0.292  Sum_probs=105.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHhcccc--cc-------------
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKAY--AQ-------------  279 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~--g~liGiis~~dl~~~~~~~~~--~~-------------  279 (358)
                      .++++|+++++++.+++++.+|.++|.+++++++||||++  |+++|+||++||+.++.....  ..             
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR   93 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            6788899999999999999999999999999999999964  689999999999986542210  00             


Q ss_pred             ---------------ccccc---------------------------------------------------------ccH
Q 018309          280 ---------------IHLDE---------------------------------------------------------MNI  287 (358)
Q Consensus       280 ---------------l~~~~---------------------------------------------------------~~v  287 (358)
                                     ..+.+                                                         .+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (250)
T 2d4z_A           94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL  173 (250)
T ss_dssp             -------------------------------------------------------------------------CCSCCBH
T ss_pred             ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence                           00000                                                         000


Q ss_pred             HHH--HhcCCCCCCCc----ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          288 HQA--LQLGQDANPSL----GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       288 ~~~--l~~~~~~~~~~----~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .+.  +... ....++    .+|...++++.++++|.+|..+|...|++++||++  .|+++||||+.||++++.+
T Consensus       174 ~~~~~~~~~-~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          174 EEIYRWEQR-EKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHH-HTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhHHHH-hcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            000  0000 011122    15888999999999999999999999999999999  3999999999999999865

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.69  E-value=2.2e-16  Score=126.32  Aligned_cols=118  Identities=11%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             CCCCCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc
Q 018309          128 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  205 (358)
Q Consensus       128 ~~~~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~  205 (358)
                      ++.+|.  .+++++++++++.+|++.|.+++++++||+|+  +.|   +++|++|.+|+++++....         ... 
T Consensus         8 v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~---------~~~-   72 (130)
T 3i8n_A            8 VTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGS---------GQK-   72 (130)
T ss_dssp             CTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTT---------TTS-
T ss_pred             HhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCC---------CcC-
Confidence            345777  55778999999999999999999999999964  225   7999999999998664321         112 


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       206 v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                                 .++++|. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+
T Consensus        73 -----------~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           73 -----------QLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             -----------BHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             -----------CHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence                       3444573 578999999999999999999999999999999999999999999865

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.69  E-value=1.6e-16  Score=125.45  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=99.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++++....           .      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~-----------~------   62 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK-----------K------   62 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC-----------C------
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc-----------c------
Confidence            57788999999999999999999999999999974   45   8999999999998664311           1      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                            .++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        63 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           63 ------TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             ------BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence                  344558788999999999999999999999999999999899999999999998764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.66  E-value=2.9e-16  Score=143.03  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=105.2

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      .+++++|+++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++...          .+.++.+ 
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~-  205 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD-  205 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence            467788999999999999999999999987     889999999999999999999997631          1467777 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                  +|.++++++++++++.+|++.|.+++.+++|||| ++|+++|+||..|+++.+.
T Consensus       206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        7777899999999999999999999999999999 5899999999999999874

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.65  E-value=1e-15  Score=122.65  Aligned_cols=119  Identities=22%  Similarity=0.323  Sum_probs=101.4

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.++++++++++++.+|++.|.+++.+.+||+|    +|   +++|+++..|+.+++.....        ..     
T Consensus         7 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~-----   66 (133)
T 2ef7_A            7 KEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LE-----   66 (133)
T ss_dssp             GGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TT-----
T ss_pred             HHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cc-----
Confidence            346888899999999999999999999999999996    25   89999999999987653211        11     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                             ..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.+
T Consensus        67 -------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           67 -------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             -------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                   23455577788999999999999999999999999999989999999999999986653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=6.5e-16  Score=122.34  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=99.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++++.+|++.|.+++.+.+||+|    +|   +++|+++.+|+++++......       ...      
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~~-------~~~------   65 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDDL-------AEV------   65 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCCT-------TTS------
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCcc-------ccc------
Confidence            4677899999999999999999999999999996    25   899999999999876543210       122      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                            .++++|.+++.++.+++++.++++.|.+++.+++||+|+ |+++|++|.+|+++.+.+
T Consensus        66 ------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           66 ------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             ------CHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                  345558788999999999999999999999999999998 999999999999987653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.65  E-value=6.3e-16  Score=140.23  Aligned_cols=117  Identities=18%  Similarity=0.269  Sum_probs=103.2

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      .+++++|+++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+ 
T Consensus       135 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~-  203 (278)
T 2yvy_A          135 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-  203 (278)
T ss_dssp             TBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT-
T ss_pred             chHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            356778999999999999999999999987     799999999999999999999998621          1344555 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                  +|.++++++++++++.+|++.|.+++.+++|||| ++|+++|+||..|+++.+.
T Consensus       204 ------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          204 ------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             ------------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC-
T ss_pred             ------------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                        7878899999999999999999999999999999 5799999999999999874

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.65  E-value=3.3e-16  Score=124.93  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=99.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.+++.++++++++.+|++.|.+++.+.+||+|+    |   +++|++|.+|+.+++....         .       
T Consensus         9 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~---------~-------   65 (128)
T 3gby_A            9 YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGWP---------T-------   65 (128)
T ss_dssp             GGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSSC---------C-------
T ss_pred             HhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhCC---------c-------
Confidence            468889999999999999999999999999999963    4   8999999999987322110         0       


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                          ....++++|.+++.++.+++++.++++.|.+++.+++||+|++|+++|++|.+|+++.+.
T Consensus        66 ----~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           66 ----VKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             ----TTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----ccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                002355668888999999999999999999999999999999999999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.64  E-value=2e-16  Score=126.00  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=94.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|.+  +++++++++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++++....         ..     
T Consensus         8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~-----   68 (127)
T 3nqr_A            8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EA-----   68 (127)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CC-----
T ss_pred             hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CC-----
Confidence            4553  4889999999999999999999999999964  225   7999999999987432110         11     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                             ..++++|.+ +.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+
T Consensus        69 -------~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           69 -------FSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             -------CCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             -------CCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                   234555754 67899999999999999999999999999999999999999999854

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=1.3e-15  Score=121.97  Aligned_cols=115  Identities=9%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      .+++++++++++.+|++.|.+++++++||+++  +.|   +++|+++.+|+++++.....       ....         
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~~-------~~~~---------   70 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKKE-------FTKE---------   70 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSSC-------CCHH---------
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccCc-------cchh---------
Confidence            46889999999999999999999999999953  234   89999999999986543110       0111         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                         .+.++| ++++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        71 ---~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           71 ---IMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             ---HHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ---hHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence               244457 56789999999999999999999999999999999999999999998654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.64  E-value=1.1e-15  Score=126.75  Aligned_cols=118  Identities=13%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.++ +++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....       ....     
T Consensus        21 ~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~-----   81 (159)
T 3fv6_A           21 DFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQE-------LTSV-----   81 (159)
T ss_dssp             GSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCSC-------TTTC-----
T ss_pred             HHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccCc-------ccCc-----
Confidence            367764 59999999999999999999999999974   45   89999999999986632110       0122     


Q ss_pred             ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---cEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g---~liGiis~~dl~~~~~  273 (358)
                             .++++|.+  ++.++.+++++.+|++.|.+++++++||+|++|   +++|+||.+|++..+.
T Consensus        82 -------~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           82 -------PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------BGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------CHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                   34555876  789999999999999999999999999999888   9999999999998665

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.63  E-value=1.1e-15  Score=123.26  Aligned_cols=118  Identities=21%  Similarity=0.387  Sum_probs=99.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhH-HHHHHhhcccCCCCcccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di-~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      .+|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+ .+++....        ...     
T Consensus        12 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~-----   72 (138)
T 2p9m_A           12 DVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLE-----   72 (138)
T ss_dssp             GTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSS-----
T ss_pred             HhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCC-----
Confidence            367788999999999999999999999999999974   35   89999999999 87543210        011     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                             ..++++|.+++.++.+++++.++++.|.+++     .+.+||+|++|+++|++|..|+++.+.
T Consensus        73 -------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           73 -------TTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             -------CBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------cCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                   2355568888999999999999999999999     999999998999999999999998654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.63  E-value=2.3e-15  Score=121.45  Aligned_cols=120  Identities=15%  Similarity=0.273  Sum_probs=100.1

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.++++++++++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++.+.....       ...     
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~-----   71 (138)
T 2yzi_A           10 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYD-----   71 (138)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTT-----
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC-------ccc-----
Confidence            3468889999999999999999999999999999974   45   89999999999752221100       011     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                             ..++++|.+++.++.+++++.+|++.|.+++++++ |+|++|+++|++|..|+++.+.+
T Consensus        72 -------~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           72 -------IPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------SBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             -------CCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence                   24566688889999999999999999999999999 99988999999999999997654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.63  E-value=1.6e-15  Score=125.82  Aligned_cols=127  Identities=19%  Similarity=0.239  Sum_probs=102.8

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++........      ..  ..
T Consensus         8 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~------~~--~~   73 (160)
T 2o16_A            8 EDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSA------QG--DS   73 (160)
T ss_dssp             GGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhcccc------cc--cc
Confidence            3467888999999999999999999999999999974   45   89999999999998765332100      00  00


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                         ......+.++|.++++++.+++++.+|++.|.+++++.+||+|+ |+++|+||.+|++..+.
T Consensus        74 ---~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           74 ---LAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             -----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             ---hhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence               00112456678889999999999999999999999999999997 99999999999998654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.63  E-value=2.4e-15  Score=121.96  Aligned_cols=118  Identities=18%  Similarity=0.268  Sum_probs=99.1

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.++++++.+++++.+|++.|.+++.+++||+|+   +| ..+++|++|..|+++++.....        ..      
T Consensus         9 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~------   70 (141)
T 2rih_A            9 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LD------   70 (141)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TT------
T ss_pred             HHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CC------
Confidence            367889999999999999999999999999999975   11 0169999999999987653210        11      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            ..++++|.+++.++.++ ++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..
T Consensus        71 ------~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           71 ------GPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             ------SBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             ------CCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence                  23555688889999999 999999999999999999999899999999999998743

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.63  E-value=3.8e-16  Score=127.91  Aligned_cols=133  Identities=17%  Similarity=0.247  Sum_probs=100.8

Q ss_pred             CCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309          130 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  207 (358)
Q Consensus       130 ~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~  207 (358)
                      .+|.+  +++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......     ..+. ...
T Consensus         9 ~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~-~~~   76 (152)
T 4gqw_A            9 EFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFN-AVQ   76 (152)
T ss_dssp             GTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHH-HHH
T ss_pred             hccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchH-HHH
Confidence            36766  7999999999999999999999999999975   45   899999999998743211100     0000 000


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ..........++++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+.+
T Consensus        77 ~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           77 KLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             TC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            0000111235667788888999999999999999999999999999999999999999999997653

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.63  E-value=3.2e-16  Score=126.50  Aligned_cols=117  Identities=9%  Similarity=0.089  Sum_probs=96.0

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|.  .+++++++++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++++....        ...     
T Consensus         8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~-----   69 (136)
T 3lfr_A            8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDS-----   69 (136)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGG-----
T ss_pred             ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCC-----
Confidence            355  56889999999999999999999999999964  224   7999999999988442100        011     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                             ..++++|.+ ++++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        70 -------~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           70 -------DDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             -------CCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             -------cCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                   234556765 889999999999999999999999999999999999999999998543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.63  E-value=1.5e-15  Score=125.00  Aligned_cols=116  Identities=11%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEE-ecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309          131 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  207 (358)
Q Consensus       131 ~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~-d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~  207 (358)
                      +|.+  +++++++++++.+|++.|.+++++++||+ ++  +.|   +++|++|..|+++++....          .    
T Consensus        25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~----   85 (153)
T 3oco_A           25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------K----   85 (153)
T ss_dssp             HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------T----
T ss_pred             EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------C----
Confidence            4654  78999999999999999999999999999 42  124   8999999999998765331          1    


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                              ..++++| ++++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|++..+..
T Consensus        86 --------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 --------AKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             --------SBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             --------CcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence                    1345558 789999999999999999999999999999999999999999999987653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=4.9e-15  Score=122.45  Aligned_cols=133  Identities=14%  Similarity=0.189  Sum_probs=102.9

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcce-EEEEecCCCCCCcceEEEeechHhHHHHHHhhccc-CCCCcccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~-lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~-~~~~~~~~~~~v  206 (358)
                      +.+|.++++++++++++.+|++.|.++++++ +||+|+    +   +++|++|..|+++++...... ... ...+....
T Consensus        19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~-~~~~~~~~   90 (157)
T 1o50_A           19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPK-EELIRSSM   90 (157)
T ss_dssp             TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC--------CC
T ss_pred             hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhcc-HHHHHHHH
Confidence            3478899999999999999999999999999 999974    2   699999999999876532100 000 00000000


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      .    ......+.++|.+ ++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+.+
T Consensus        91 ~----~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           91 K----RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             C----CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             H----HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            0    0112356777988 9999999999999999999999999999988999999999999986653

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.63  E-value=9.6e-16  Score=122.46  Aligned_cols=114  Identities=10%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|.  .+++++++++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++++..           ...    
T Consensus        10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~~----   69 (129)
T 3jtf_A           10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PAL----   69 (129)
T ss_dssp             HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TTS----
T ss_pred             hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CCc----
Confidence            455  57789999999999999999999999999964  225   79999999999873320           111    


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                              .++++|.+ ++++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus        70 --------~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           70 --------DIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             --------CGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             --------CHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    24455654 789999999999999999999999999999999999999999998654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.62  E-value=4.1e-15  Score=121.79  Aligned_cols=119  Identities=15%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      .+++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......          ....    .
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~----------~~~~----~   84 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI----------EFER----L   84 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB----------CGGG----G
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc----------chhH----H
Confidence            46899999999999999999999999999975   45   899999999999865422110          0000    0


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ....++++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|++|.+|+++.+.+
T Consensus        85 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence            1134667788899999999999999999999987  9999999999999999999997654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=5.9e-15  Score=123.03  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=99.3

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      .+++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......      ....         
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~~---------   93 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQQ---------   93 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGTS---------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cccC---------
Confidence            36889999999999999999999999999974   45   899999999999987654311      0122         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                         .++++|.++++++.+++++.+|++.|.+++++++||+|+ |+++|+||..|++..+.+
T Consensus        94 ---~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           94 ---SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             ---CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence               355568888999999999999999999999999999998 999999999999997654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.62  E-value=1.6e-15  Score=124.22  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=97.9

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      +.+|.+  +++++++++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....       ....  
T Consensus        31 ~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~--   95 (149)
T 3k2v_A           31 NDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGVD-------MRDA--   95 (149)
T ss_dssp             GGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSSC-------CTTC--
T ss_pred             HHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCCC-------cccC--
Confidence            346887  8999999999999999999999999999975   45   89999999999986643211       0122  


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  270 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~  270 (358)
                                .++++|.+++.++.+++++.+|++.|.+++++.+||+|++ +++|+||.+|+++
T Consensus        96 ----------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           96 ----------SIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             ----------BHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             ----------cHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                      3455587889999999999999999999999999999975 9999999999864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.61  E-value=5.7e-15  Score=124.31  Aligned_cols=119  Identities=7%  Similarity=0.048  Sum_probs=99.2

Q ss_pred             CCCCCCC--CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccc
Q 018309          127 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  204 (358)
Q Consensus       127 ~~~~~~~--~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~  204 (358)
                      .++.+|.  .+++++++++++.+|++.|.+++++++||+++  +.|   +++|+++.+|+++++....          ..
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~~  101 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------RV  101 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------SC
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------cc
Confidence            4566785  46889999999999999999999999999964  224   7999999999998765321          11


Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          205 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       205 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      +            +.  |.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       102 ~------------v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          102 R------------RN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             C------------GG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             h------------hH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            1            22  23467899999999999999999999999999999999999999999997654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=3.3e-15  Score=120.10  Aligned_cols=115  Identities=17%  Similarity=0.271  Sum_probs=96.7

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++++++++++++.+|++.|.+++.+++||+|    +|   +++|+++..|+++++.....      .            .
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~------------~   71 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------P------------V   71 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------C------------G
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------C------------c
Confidence            6889999999999999999999999999996    25   89999999999874432110      0            0


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ....++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|++..+.+
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence            11245666888899999999999999999999999999999 7999999999999986643

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.61  E-value=4.1e-15  Score=120.64  Aligned_cols=119  Identities=22%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++.+++++.+|++.|.+++.+++||+|+   +|   +++|+++..|+++++.....      .....+     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~-----   78 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLS-----   78 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSB-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCcc-----
Confidence            56788999999999999999999999999999974   35   89999999999987653210      001222     


Q ss_pred             cccccccccccCCC------CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          211 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       211 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                             +.++|.+      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus        79 -------v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           79 -------VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -------HHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------HHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                   3333543      5889999999999999999999999999998999999999999998654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.61  E-value=4.3e-15  Score=126.20  Aligned_cols=121  Identities=13%  Similarity=0.128  Sum_probs=101.7

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +.+|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|+++.+|+++++......              
T Consensus        12 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~~--------------   71 (184)
T 1pvm_A           12 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK--------------   71 (184)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC--------------
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhcccC--------------
Confidence            3468889999999999999999999999999999964   35   899999999999865422100              


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                          .....++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus        72 ----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 ----PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             ----GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ----cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                0112456668888999999999999999999999999999998899999999999998554

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.60  E-value=6.6e-15  Score=121.43  Aligned_cols=124  Identities=15%  Similarity=0.233  Sum_probs=100.4

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      +.+|.+  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++.....        ..  .
T Consensus        14 ~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~--~   77 (157)
T 2emq_A           14 KPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLER--------IE--F   77 (157)
T ss_dssp             TTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSS--------BC--G
T ss_pred             HhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhcccc--------cc--h
Confidence            446775  8899999999999999999999999999974   45   89999999999985432110        00  0


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ..    .....+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|++..+..
T Consensus        78 ~~----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           78 ER----LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GG----GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             HH----hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            00    01134667788899999999999999999999987  9999988999999999999987654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.60  E-value=4.1e-15  Score=122.89  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc
Q 018309          128 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  205 (358)
Q Consensus       128 ~~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~  205 (358)
                      ++.+|.+  +++++++++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++++...          ..  
T Consensus        40 v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~--  102 (156)
T 3oi8_A           40 VRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQ--  102 (156)
T ss_dssp             GGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GG--
T ss_pred             HhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Cc--
Confidence            3457875  7899999999999999999999999999964  223   799999999998732110          11  


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 018309          206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  269 (358)
Q Consensus       206 v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~  269 (358)
                                ..++++|.+ +.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|++
T Consensus       103 ----------~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          103 ----------FHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             ----------CCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ----------ccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                      234555755 78999999999999999999999999999999999999999985

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.60  E-value=1.7e-14  Score=128.14  Aligned_cols=209  Identities=11%  Similarity=0.162  Sum_probs=128.1

Q ss_pred             CcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhh
Q 018309           27 HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  106 (358)
Q Consensus        27 ~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~  106 (358)
                      .++.|+|-     ++++++++++|+.+|++.|.++++.++||+|.+ ++++|++|..|+...+....    .........
T Consensus         7 ~~v~~im~-----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~----~~~~~~~~~   76 (245)
T 3l2b_A            7 LKVEDLEM-----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIW----DSNILAKSA   76 (245)
T ss_dssp             CBGGGSCC-----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCC----CTTHHHHTT
T ss_pred             CcHHHhcC-----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhh----hhhhhhhcc
Confidence            34667763     467899999999999999999999999999964 79999999999998654211    110011111


Q ss_pred             cchHHHHHHHHhhccccc--cCC------------------CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecC
Q 018309          107 HTISAWKVGKLQLNLKRQ--MDG------------------NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHST  166 (358)
Q Consensus       107 ~~i~~~~~~~~~~~~~~~--~d~------------------~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~  166 (358)
                      .....+   .........  .+.                  ........++.+ .+  -.++...+.++++..+++++..
T Consensus        77 ~~~~~v---~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~  150 (245)
T 3l2b_A           77 TSLDNI---LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGH  150 (245)
T ss_dssp             CCHHHH---HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTC
T ss_pred             CCHHHH---HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCC
Confidence            122221   111110000  000                  000112233333 22  3788888889999999888431


Q ss_pred             CCCC------CcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHH
Q 018309          167 GPAG------SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSAL  239 (358)
Q Consensus       167 ~~~g------~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~  239 (358)
                      ....      ....+..+.+..|........                     .....++++|+ +++.++.+++++.+|+
T Consensus       151 ~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~  209 (245)
T 3l2b_A          151 TPSKEIIELAKKNNITVITTPHDSFTASRLI---------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVK  209 (245)
T ss_dssp             CCCHHHHHHHHHHTCEEEECSSCHHHHHHHG---------------------GGGSBHHHHSBCTTCCCEETTSBHHHHH
T ss_pred             CCCHHHHHHHHHcCCeEEEeCCChHHHHHHH---------------------hcCCceeeEecCCccEEECCCCcHHHHH
Confidence            1110      000123344444433211100                     11124667798 8899999999999999


Q ss_pred             HHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          240 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       240 ~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                      +.|.+++++++||+|++|+++|++|.+|+++..
T Consensus       210 ~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          210 VTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             HHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            999999999999999999999999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.59  E-value=4.1e-15  Score=146.66  Aligned_cols=123  Identities=19%  Similarity=0.231  Sum_probs=105.4

Q ss_pred             ccccccCCCCceEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309          216 PRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  293 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~~~~vpVvd-~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~  293 (358)
                      .+++++|.++++++.++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+..+..    ..+.++.+    
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~----~~~~~V~~----  455 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR----QQSDPAIK----  455 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----CTTSBGGG----
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC----cCCCcHHH----
Confidence            46888999999999999 9999999999999999999999 78999999999999986543311    11356666    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCC---CCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~---~~~liGvis~~Dil~~~~~  357 (358)
                               +|.++++++++++++.++++.|.++++  +||||++   .|+++|+||+.||++++..
T Consensus       456 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          456 ---------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ---------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                     788899999999999999999987775  7999941   3899999999999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.59  E-value=9.3e-15  Score=132.47  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=103.9

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC-----CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC
Q 018309          123 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  197 (358)
Q Consensus       123 ~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~-----~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~  197 (358)
                      +....+|.+|.++++++.+++++.+|++.|.++     +++++||+|+   +|   +++|++|.+|++..          
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~----------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA----------  195 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS----------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC----------
Confidence            556677889999999999999999999999987     7899999975   45   89999999999861          


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          198 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       198 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                         ...            ..++++|.++++++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+..
T Consensus       196 ---~~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          196 ---DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ---CTT------------CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ---CCC------------CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence               011            23556688889999999999999999999999999999999999999999999987654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.59  E-value=1.5e-15  Score=121.68  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=96.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHH-HHHhhcccCCCCccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~-~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      +|.++++++++++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++ ++.....       ...      
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~------   73 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD-------PNT------   73 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC-------TTT------
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC-------ccc------
Confidence            46678889999999999999999999999999965   35   8999999999984 3321110       011      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            ..++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+++.+
T Consensus        74 ------~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           74 ------ATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             ------SBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ------cCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                  2455668888999999999999999999999999999997 9999999999999854

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.58  E-value=6.7e-15  Score=133.95  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC-----CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC
Q 018309          123 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  197 (358)
Q Consensus       123 ~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~-----~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~  197 (358)
                      +....++.+|.++++++++++++.+|++.|.++     +++++||+|+   +|   +++|++|.+|+++.          
T Consensus       134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~----------  197 (286)
T 2oux_A          134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN----------  197 (286)
T ss_dssp             SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS----------
T ss_pred             CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcC----------
Confidence            556667788999999999999999999999987     7889999975   45   89999999998761          


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          198 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       198 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                         ...            ..++++|.++++++++++++.+|++.|.+++++.+||+|++|+++|+||..|++..+.+
T Consensus       198 ---~~~------------~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          198 ---DDD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ---CTT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---CCC------------CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence               011            23555688889999999999999999999999999999999999999999999987654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.57  E-value=1.7e-14  Score=119.03  Aligned_cols=116  Identities=13%  Similarity=0.240  Sum_probs=98.0

Q ss_pred             CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309          134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  213 (358)
Q Consensus       134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~  213 (358)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|..|+++++......      ...          
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~----------   77 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKA----------   77 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSS----------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------ccc----------
Confidence            5789999999999999999999999999963    35   799999999999866543211      012          


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                        ..++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.+...
T Consensus        78 --~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           78 --TRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             --CBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             --cCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence              245556888899999999999999999999999999999 79999999999999977644

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.56  E-value=7.7e-15  Score=123.72  Aligned_cols=137  Identities=18%  Similarity=0.269  Sum_probs=99.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccC--CCCccccccc-
Q 018309          131 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQP-  205 (358)
Q Consensus       131 ~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~--~~~~~~~~~~-  205 (358)
                      +|.+  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|++++........  .......... 
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4555  7899999999999999999999999999975   45   8999999999986432111000  0000000000 


Q ss_pred             -----ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          206 -----VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       206 -----v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                           ...+........++++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                 00000011223577789888999999999999999999999999999999999999999999998664

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.56  E-value=3.3e-14  Score=138.00  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC-----CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC
Q 018309          123 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  197 (358)
Q Consensus       123 ~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~-----~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~  197 (358)
                      |..+.++++|.++++++++++++.+|++.|.++     +++++||+|+   ++   +++|+++.+|++..      .   
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~------~---  216 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D---  216 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS------C---
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC------C---
Confidence            667788999999999999999999999999986     5899999975   35   89999999999861      0   


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          198 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       198 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                          .+.            .++++|+++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.+
T Consensus       217 ----~~~------------~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 ----PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ----TTS------------BGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----CCC------------cHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence                122            3556688889999999999999999999999999999999999999999999987653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.55  E-value=1e-14  Score=120.71  Aligned_cols=122  Identities=9%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309          131 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  208 (358)
Q Consensus       131 ~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~  208 (358)
                      +|.+  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......          ....
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~~   82 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFEK   82 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGGG
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chhh
Confidence            3555  7889999999999999999999999999975   45   899999999999866432110          0000


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                          .....+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|++..+..
T Consensus        83 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 ----LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             ----TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----hccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                01124566688889999999999999999999877  9999989999999999999987653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.55  E-value=5.9e-14  Score=124.70  Aligned_cols=141  Identities=12%  Similarity=0.133  Sum_probs=103.4

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC----------
Q 018309          128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----------  197 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~----------  197 (358)
                      ++++|.++++++.+++++.+|.++|.+++++++||+|+ .+.|   +++|+|+..|+++++.........          
T Consensus        15 v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~   90 (250)
T 2d4z_A           15 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADE   90 (250)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCC
T ss_pred             hHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccc
Confidence            45689999999999999999999999999999999974 2234   799999999999887544211000          


Q ss_pred             -----------------Cccccccc--------------------------------------------------ccc--
Q 018309          198 -----------------SLPILQQP--------------------------------------------------VSS--  208 (358)
Q Consensus       198 -----------------~~~~~~~~--------------------------------------------------v~~--  208 (358)
                                       ...+....                                                  ...  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
T 2d4z_A           91 EGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEM  170 (250)
T ss_dssp             C---------------------------------------------------------------------------CCSC
T ss_pred             cccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccc
Confidence                             00000000                                                  000  


Q ss_pred             cc---cccc-----cccc--c-ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          209 IQ---LGTW-----VPRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       209 l~---i~~~-----~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      +.   +..|     ...+  . .+|++.++++.+++++.+|..+|...|++++||++ .|+++|+||+.|+++++.
T Consensus       171 i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            00   0000     0122  2 35888999999999999999999999999999997 699999999999999765

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.55  E-value=1.5e-14  Score=140.49  Aligned_cols=117  Identities=18%  Similarity=0.271  Sum_probs=104.4

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                      .+++++|+++++++++++++.+|++.|.++     +++++||+|++++++|++|.+|++..   .       .+.++.+ 
T Consensus       155 ~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---~-------~~~~v~d-  223 (473)
T 2zy9_A          155 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---D-------PRTRVAE-  223 (473)
T ss_dssp             TBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---C-------TTSBGGG-
T ss_pred             CCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---C-------CCCcHHH-
Confidence            467788999999999999999999999986     58999999999999999999999862   0       1356666 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                  +|.++++++++++++.++++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus       224 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 ------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             ------------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                        8878899999999999999999999999999999 5899999999999998864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.54  E-value=3.4e-14  Score=117.87  Aligned_cols=124  Identities=14%  Similarity=0.147  Sum_probs=96.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++++.+|++.|.+++++++||+|++ ++|   +++|++|..|+++++.......   ......      
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~-~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~------   84 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST-ESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQ------   84 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHC----------CCCC------
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecC-CCC---EEEEEEEHHHHHHHHHhhcccc---CCcccc------
Confidence            467789999999999999999999999999999631 235   8999999999998765322110   000112      


Q ss_pred             cccccccccccCCCC------ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          211 LGTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       211 i~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                            .+.++|..+      +.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++.+.+
T Consensus        85 ------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           85 ------CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             ------BHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                  233334443      78999999999999999999999999999 7999999999999986653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.53  E-value=2.6e-15  Score=150.92  Aligned_cols=139  Identities=17%  Similarity=0.074  Sum_probs=103.3

Q ss_pred             ccccccCC--CCceEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-ccc---------c
Q 018309          216 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIH---------L  282 (358)
Q Consensus       216 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l~---------~  282 (358)
                      .+++++|+  +++.++++++++.++.+.|. +++++++||+|++|+++|++|++|+.+.+..+... ...         .
T Consensus       453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred             CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            46889999  88999999999999999999 79999999999999999999999999865432100 000         0


Q ss_pred             cc----ccHHHHHhcC---------------CCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 018309          283 DE----MNIHQALQLG---------------QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  342 (358)
Q Consensus       283 ~~----~~v~~~l~~~---------------~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~l  342 (358)
                      ..    ..++......               ..+..+. ++|+++++++++++++.+|.+.|.+++++++||++  +|++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l  610 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL  610 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence            00    0001100000               0011112 38999999999999999999999999999999996  4999


Q ss_pred             EEEEehHHHHHHhh
Q 018309          343 EGIISLSDVFRFLL  356 (358)
Q Consensus       343 iGvis~~Dil~~~~  356 (358)
                      +|+||++|+++++.
T Consensus       611 vGIVT~~Dll~~~~  624 (632)
T 3org_A          611 VGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEEGGGTEECCC
T ss_pred             EEEEehhhHHHHHh
Confidence            99999999987654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.53  E-value=7.2e-14  Score=118.33  Aligned_cols=134  Identities=10%  Similarity=0.128  Sum_probs=99.8

Q ss_pred             ceEe--CCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCC----ccccccccccc
Q 018309          136 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI  209 (358)
Q Consensus       136 ~v~v--~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~----~~~~~~~v~~l  209 (358)
                      ++++  .+++++.+|++.|.+++++++||+++ +++|   +++|++|..|+++++..........    ...+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7788  99999999999999999999999931 1245   8999999999999876542110000    00000000000


Q ss_pred             c-cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          210 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       210 ~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      . .......++++|.++++++.+++++.+|++.|.+++.+++||+| +|+++|+||.+|+++.+.+
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            0 00112357788988899999999999999999999999999999 8999999999999987653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.50  E-value=1.3e-13  Score=134.79  Aligned_cols=114  Identities=16%  Similarity=0.249  Sum_probs=101.3

Q ss_pred             ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       220 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      +.|..+++++.+++++.+++++|.+++++++||+|+  +++++|+||.+|+..   ..   .   .+.++.+        
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~---~~---~---~~~~V~~--------  179 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF---IQ---D---YSIKISD--------  179 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT---CC---C---SSSBHHH--------
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh---hc---c---CCCcHHH--------
Confidence            447778899999999999999999999999999998  899999999999964   11   1   1467787        


Q ss_pred             CCCcccCCc-cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          298 NPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       298 ~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                           +|.+ +++++++++++.++++.|.+++++.+|||| ++|+++|+||..|+++.+.
T Consensus       180 -----vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          180 -----VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             -----HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence                 7776 899999999999999999999999999999 5899999999999999863

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.44  E-value=6.1e-13  Score=130.10  Aligned_cols=115  Identities=19%  Similarity=0.288  Sum_probs=101.7

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd--~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      .++|..+++++.+++++.++++.|.+++++++||+|  ++++++|+||.+|++...      .   .+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~---~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------D---YNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------C---SSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------c---CCCcHHH-------
Confidence            345888899999999999999999999999999999  789999999999998631      0   1345555       


Q ss_pred             CCCCcccCCc-cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          297 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       297 ~~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                            +|.+ +++++++++++.++++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                  7877 899999999999999999999999999999 5899999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.42  E-value=6.2e-14  Score=136.50  Aligned_cols=114  Identities=15%  Similarity=0.255  Sum_probs=86.7

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      .+.|..+++++.+++++.+++++|.+++++++||+|++++++|+||.+|+...   .      ..+.++.+         
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~------~~~~~v~d---------  153 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T------DLTKSVAA---------  153 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C------CTTSBGGG---------
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c------cCCCcHHH---------
Confidence            34477789999999999999999999999999999999999999999999621   1      11355666         


Q ss_pred             CCcccCC-c-cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          299 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       299 ~~~~~~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                          +|. + +++++++++++.++++.|.+++++.+|||| ++|+++|+||+.|+++..
T Consensus       154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence                676 3 599999999999999999999999999999 589999999999999864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.42  E-value=3.3e-12  Score=124.77  Aligned_cols=156  Identities=12%  Similarity=0.151  Sum_probs=118.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      .|..+++++++++++.+++++|.+++++++||+|+. .++   +++|++|.+|+..       .     .....      
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~-------~-----~~~~~------  175 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF-------I-----QDYSI------  175 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT-------C-----CCSSS------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh-------h-----ccCCC------
Confidence            577788999999999999999999999999999631 134   8999999999854       0     01122      


Q ss_pred             cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 018309          211 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  289 (358)
Q Consensus       211 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~  289 (358)
                            .+.++|++ +++++++++++.++++.|.+++++.+||+|++|+++|++|..|+++.......         +.+
T Consensus       176 ------~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---------~~D  240 (511)
T 3usb_A          176 ------KISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---------AKD  240 (511)
T ss_dssp             ------BHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---------CBC
T ss_pred             ------cHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---------hhh
Confidence                  34555887 89999999999999999999999999999999999999999999997653211         111


Q ss_pred             HHhcCCCCCCCcccCCcc--ceEEcCCCCHHHHHHHHhcCCCCEEEEEe
Q 018309          290 ALQLGQDANPSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVE  336 (358)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  336 (358)
                                   .+.+.  ...+.......+.++.+.+.++..+++-.
T Consensus       241 -------------~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          241 -------------KQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             -------------TTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             -------------hccceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence                         11111  22344444556667788888888776654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.41  E-value=4.4e-13  Score=132.12  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             CCCCCCCCceEeCCC-CCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309          128 NGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  206 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~-~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v  206 (358)
                      ++++|.++++++.++ +++.+|+++|.+++++++||+|.  ++|   +++|+||.+|+++++......       ...  
T Consensus       386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~~-------~~~--  451 (527)
T 3pc3_A          386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNRQ-------QSD--  451 (527)
T ss_dssp             GGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCCC-------TTS--
T ss_pred             HHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccCc-------CCC--
Confidence            456889999999999 99999999999999999999961  145   899999999999977653211       122  


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC----CcEEEEEeHHHHHHHHhcc
Q 018309          207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~----g~liGiis~~dl~~~~~~~  275 (358)
                                .+.++|.++++++.+++++.+++++|.++++  +||+|++    |+++|+||..||++.+.+.
T Consensus       452 ----------~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          452 ----------PAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             ----------BGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             ----------cHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence                      3555688899999999999999999987765  7999984    9999999999999977644

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.38  E-value=3.6e-14  Score=138.76  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      |.++++++.+++++.++++.|.+++++++||+|++   |+++|+||.+|++.. . .   .   .+.++.+         
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d---------  165 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD---------  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence            66789999999999999999999999999999987   899999999999863 1 0   1   1345565         


Q ss_pred             CCcccCCcc--ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          299 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       299 ~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                          +|.++  ++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                67666  99999999999999999999999999999 5899999999999998864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.37  E-value=5e-14  Score=137.84  Aligned_cols=115  Identities=16%  Similarity=0.289  Sum_probs=4.8

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      .++|.++++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+....      .   .+.++.+         
T Consensus        98 ~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------~---~~~~v~~---------  159 (494)
T 1vrd_A           98 ENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------N---LSKKIKD---------  159 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------C---CCCcHHH---------
Confidence            455888899999999999999999999999999999889999999999998621      0   1345555         


Q ss_pred             CCcccCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          299 PSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       299 ~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                          +|.+  +++++++++++.++++.|.+++++++|||| ++|+++|+||..|+++.+.
T Consensus       160 ----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          160 ----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ------------------------------------------------------CHHHHT
T ss_pred             ----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                6766  899999999999999999999999999999 5899999999999999864

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.35  E-value=6.8e-14  Score=136.09  Aligned_cols=113  Identities=14%  Similarity=0.272  Sum_probs=0.9

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      .+.|..+++++.+++++.+++++|.+++++++||+| +|+++|+||.+|+.....         .+.++.+         
T Consensus        91 ~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~---------  151 (490)
T 4avf_A           91 ETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA---------  151 (490)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH---------
Confidence            445777899999999999999999999999999999 899999999999963210         1345666         


Q ss_pred             CCcccCC-c-cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          299 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       299 ~~~~~~~-~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                          +|. + +++++++++++.+|++.|.+++++.+|||| ++|+++|+||+.|++++.
T Consensus       152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -----------------------------------------------------------
T ss_pred             ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                666 3 699999999999999999999999999999 589999999999999874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.30  E-value=3e-11  Score=118.08  Aligned_cols=116  Identities=15%  Similarity=0.172  Sum_probs=99.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..+++++++++++.++++.|.+++++++||+|. .+++   +++|+++.+|++..            ....       
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~------------~~~~-------  151 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI------------SDYN-------  151 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC------------SCSS-------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh------------ccCC-------
Confidence            68889999999999999999999999999999961 0134   89999999999862            0011       


Q ss_pred             cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          211 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       211 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                           ..+.++|++ +++++++++++.++++.|.+++++.+||+|++|+++|++|.+|+++....
T Consensus       152 -----~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          152 -----APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -----SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                 245566887 88999999999999999999999999999999999999999999997763

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.30  E-value=2.2e-13  Score=133.12  Aligned_cols=165  Identities=14%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      |.++++++++++++.+|+++|.+++++++||+|++...|   +++|++|.+|+++.      .     .....       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~------~-----~~~~~-------  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID------L-----TQTET-------  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh------h-----ccccC-------
Confidence            777899999999999999999999999999997511114   89999999999762      0     00122       


Q ss_pred             ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 018309          212 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  289 (358)
Q Consensus       212 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~  289 (358)
                           .+.++|+++  ++++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+++.......         ..+
T Consensus       162 -----~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~---------~~d  227 (503)
T 1me8_A          162 -----KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE---------LVD  227 (503)
T ss_dssp             -----------------------------------------------------------------CCC---------CBC
T ss_pred             -----cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---------hhc
Confidence                 355568877  9999999999999999999999999999999999999999999986542211         011


Q ss_pred             HHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEE
Q 018309          290 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG  344 (358)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liG  344 (358)
                      ..       ..  ++  ....++. ....+.++.|.+.+++.+. ++..+|...|
T Consensus       228 ~~-------~~--l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~-Vd~~~g~~~~  269 (503)
T 1me8_A          228 SQ-------KR--YL--VGAGINT-RDFRERVPALVEAGADVLC-IDSSDGFSEW  269 (503)
T ss_dssp             TT-------SC--BC--CEEEECS-SSHHHHHHHHHHHTCSEEE-ECCSCCCSHH
T ss_pred             cc-------cc--cc--cccccCc-hhHHHHHHHHHhhhccceE-EecccCcccc
Confidence            00       00  11  1123444 5566668888888998654 4422354444

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.29  E-value=2.4e-13  Score=129.75  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  298 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~  298 (358)
                      |..+++++.+++++.+|.++|.+++++.+||+|+   +|+++|++|.+|+...       +.   +.++.+         
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-------d~---~~~V~e---------  204 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-------DA---ETPIKS---------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-------cc---ceEhhh---------
Confidence            4457899999999999999999999999999986   6899999999998641       11   345666         


Q ss_pred             CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309          299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  354 (358)
Q Consensus       299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~  354 (358)
                          +|++++++++++.++.+|.+.|.++++..+|||| ++|+++|+||+.|+++.
T Consensus       205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                8888999999999999999999999999999999 58999999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.29  E-value=1.4e-12  Score=130.99  Aligned_cols=136  Identities=12%  Similarity=0.060  Sum_probs=99.0

Q ss_pred             CCCCC--CCceEeCCCCCHHHHHHHHh-hCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCc------
Q 018309          129 GRPCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------  199 (358)
Q Consensus       129 ~~~~~--~~~v~v~~~~sl~~al~~m~-~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~------  199 (358)
                      +++|.  ++++++++++++.++.+.|. +++.+++||+|+   +|   +++|+++.+|+.+.+...........      
T Consensus       456 ~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          456 REIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             HHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC--------------
T ss_pred             HHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            45777  88999999999999999999 899999999975   45   89999999999986643321100000      


Q ss_pred             -----ccccccccccc-----------------cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC
Q 018309          200 -----PILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  257 (358)
Q Consensus       200 -----~~~~~~v~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g  257 (358)
                           ..+.+.++.+.                 .-....++.++|+++++++++++++.++++.|.+++++.+||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                 00000011100                 0011124788999999999999999999999999999999999 789


Q ss_pred             cEEEEEeHHHHHHH
Q 018309          258 SLLDIYSRSDITAL  271 (358)
Q Consensus       258 ~liGiis~~dl~~~  271 (358)
                      +++|+||++|+++.
T Consensus       609 ~lvGIVT~~Dll~~  622 (632)
T 3org_A          609 KLVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEEGGGTEEC
T ss_pred             EEEEEEehhhHHHH
Confidence            99999999999764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.25  E-value=3e-12  Score=124.57  Aligned_cols=112  Identities=15%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..+++++++++++.+|+++|.+++++++||+|+   ++   +++|++|.+|+..      .      .....      
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~~------  149 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLTK------  149 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTTS------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCCC------
Confidence            57789999999999999999999999999999975   35   8999999999852      0      01122      


Q ss_pred             cccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          211 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       211 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            .+.++|+ . +++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       150 ------~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          150 ------SVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ------BGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             ------cHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                  3455577 3 588999999999999999999999999999999999999999999854

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.22  E-value=1.4e-12  Score=124.48  Aligned_cols=113  Identities=20%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      +-..++++.|+.++.+|+++|.+++++.+||+++...+|   +++|++|.+|+.. -     .       ...       
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~rf-~-----d-------~~~-------  200 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQF-Q-----D-------AET-------  200 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEecccccc-c-----c-------cce-------
Confidence            556789999999999999999999999999997533345   8999999999732 0     0       122       


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                           .+.++|+++++++.++.++.+|.++|.++++..+||||++|+++|+||++|+.+..
T Consensus       201 -----~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          201 -----PIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             -----EhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                 35556999999999999999999999999999999999999999999999998743

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.20  E-value=7e-12  Score=121.93  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..+++++++++++.+|+++|.+++++++||+|    ++   +++|++|.+|+...            .....      
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~------------~~~~~------  147 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK------------PNAGD------  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc------------cccCC------
Confidence            5778899999999999999999999999999996    24   79999999998531            00122      


Q ss_pred             cccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          211 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       211 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                            .+.++|+ . +++++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+++...
T Consensus       148 ------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 ------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  3455588 4 6899999999999999999999999999999999999999999998653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.20  E-value=4.8e-12  Score=123.78  Aligned_cols=113  Identities=19%  Similarity=0.285  Sum_probs=4.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+.+.      .      ...       
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~------~------~~~-------  154 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE------K------NLS-------  154 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh------c------CCC-------
Confidence            67889999999999999999999999999999975   35   89999999999751      0      011       


Q ss_pred             cccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          211 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       211 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                           ..+.++|++  +++++.+++++.++++.|.+++++.+||+|++|+++|++|..|+++...
T Consensus       155 -----~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          155 -----KKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -----------------------------------------------------------CHHHHT
T ss_pred             -----CcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence                 235566887  8999999999999999999999999999999999999999999998764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.19  E-value=1.8e-12  Score=126.27  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 018309          221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  300 (358)
Q Consensus       221 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~  300 (358)
                      .|..+++++.+++++.++++.|.+++++++||+|+ ++++|+++.+|++.   .        .+.++.+           
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~--------~~~~v~~-----------  154 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R--------EGKLVKE-----------  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C--------CCCCHHH-----------
Confidence            46678899999999999999999999999999997 99999999999875   1        1345565           


Q ss_pred             cccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          301 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       301 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                        +|.++++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       155 --im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          155 --LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             --HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence              6777889999999999999999999999999999 589999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.19  E-value=1.8e-13  Score=134.52  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +|+++|+||.+|+......       ..+.++.+     
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~-----  177 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE-----  177 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence            44557778899999999999999999999999999997   5899999999998763210       01345555     


Q ss_pred             CCCCCCcccCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          295 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       295 ~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                              +|.+  +++++++++++.++++.|.+++++++|||| ++|+++|+||+.|+++.+
T Consensus       178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                    6766  899999999999999999999999999999 589999999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.07  E-value=2.3e-10  Score=80.74  Aligned_cols=69  Identities=13%  Similarity=0.241  Sum_probs=54.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309          226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  305 (358)
Q Consensus       226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~  305 (358)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.....   ...+.++++             +|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~---~~~~~~V~~-------------iMt   64 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK---NPKEVKVEE-------------IMT   64 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC---CGGGCBGGG-------------TCE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC---CcccCCHHH-------------hcC
Confidence            57899999999999999999999999997 5899999999999864432221   112456666             787


Q ss_pred             ccceEE
Q 018309          306 QRCQMC  311 (358)
Q Consensus       306 ~~~~~v  311 (358)
                      ++++|+
T Consensus        65 ~~~iTV   70 (70)
T 3ghd_A           65 KNPVKI   70 (70)
T ss_dssp             ECTTCC
T ss_pred             CCCeEC
Confidence            777653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.99  E-value=6.3e-11  Score=115.46  Aligned_cols=161  Identities=15%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      .|..+++++++++++.++++.|.+++.+++||+++    +   +++|+++.+|++.      .        ...      
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~------~--------~~~------  150 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA------R--------EGK------  150 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc------C--------CCC------
Confidence            57788999999999999999999999999999963    3   7999999999864      0        112      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  290 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~  290 (358)
                            .+.++|.++++++++++++.++++.|.+++++.+||+|++|+++|++|.+|+++......         ...+ 
T Consensus       151 ------~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~---------~~~~-  214 (486)
T 2cu0_A          151 ------LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN---------AVRD-  214 (486)
T ss_dssp             --------------------------------------------------------------CCTT---------CCBC-
T ss_pred             ------CHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccc---------cccc-
Confidence                  344558878899999999999999999999999999999999999999999998643110         0000 


Q ss_pred             HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 018309          291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  347 (358)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis  347 (358)
                            ....  ++..  ..+..++  .+.+..+...++..+ |++...|...++++
T Consensus       215 ------~~g~--~~v~--~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          215 ------ENGE--LLVA--AAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             ------TTSC--BCCE--EEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             ------cCCc--eeec--ceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence                  0001  1111  1233333  566778899999876 66633455544443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.97  E-value=1.6e-11  Score=120.59  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.++++++.+++++.+|+++|.+++++.+||+|++..+|   +++|++|.+|+.....          ....      
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~------  172 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHT------  172 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC------------------------
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCC------
Confidence            36778899999999999999999999999999996411124   8999999999865210          0011      


Q ss_pred             ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          210 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            ..+.++|.+  +++++.+++++.+++++|.+++++.+||+|++|+++|++|++|+++.+
T Consensus       173 ------~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          173 ------TLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             ------CCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                  235566887  899999999999999999999999999999999999999999988744

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.76  E-value=2.3e-08  Score=70.30  Aligned_cols=47  Identities=15%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          308 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       308 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      ++++++++++.+|++.|.+++++++||+|+  |+++|++|.+|+++.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            689999999999999999999999999993  89999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-09
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	5e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	7e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	7e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.001
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	7e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	2e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	1e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.003
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	0.001

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 205 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 264
           P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++Y 
Sbjct: 2   PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 52

Query: 265 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERL 324
             D+  L +D  Y+ + L                     N      C  +D L  + + +
Sbjct: 53  SVDVMHLIQDGDYSNLDLSVGEALLKRP----------ANFDGVHTCRATDRLDGIFDAI 102

Query: 325 ANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357
            +  V RL +V+    ++EGI+SL+D+  +++ 
Sbjct: 103 KHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 228 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 286
           +   +  +  A   LV   V + P+      S + + + +D   +     Y +  L ++ 
Sbjct: 27  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYKSALVQIY 84

Query: 287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 346
             +  ++       L  + +       +  L   +  L    + RL +++  S     I+
Sbjct: 85  ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL 144

Query: 347 SLSDVFRFL 355
           +   + +FL
Sbjct: 145 THKRILKFL 153

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 201 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 260
            L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L+
Sbjct: 3   FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53

Query: 261 DIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKV 320
           ++Y   D+  L K   Y  + L                     + +    C ++D L  +
Sbjct: 54  NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLSTI 103

Query: 321 MERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
           M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 104 MDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
           R    L  T +L  A  L+   D+  +PIVD N  LL I S+ D+ A  +         D
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
            +     L                         L +    +    +  L +V      + 
Sbjct: 70  SLAFETPLFE---------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLV 118

Query: 344 GIISLSDVFRFLL 356
           GII+ SD     +
Sbjct: 119 GIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 254 DDNDSLLDIYSRSDI 268
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 7e-09
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 202 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 261
           + + +  +Q+GT+            AM+R T  +  AL + VQ  VS++P+VD+   ++D
Sbjct: 7   MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 57

Query: 262 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 321
           IYS+ D+  LA +K Y  + +      Q      +              C   + L  ++
Sbjct: 58  IYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----------CYLHETLEAII 107

Query: 322 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
            RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 108 NRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 254 DDNDSLLDIYSRSDI 268
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI               
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
           E  + +                        + PL +V+ ++A   ++ ++I E G  ++ 
Sbjct: 73  ERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KIV 113

Query: 344 GIISLSDVFRFLL 356
           GI +LSD+     
Sbjct: 114 GIFTLSDLLEASR 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTER--------- 54

Query: 275 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 334
                   D       L              ++      ++     M  +    VR L +
Sbjct: 55  --------DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 335 VEAGSKRVEGIISLSDVFRFLL 356
           ++ G  +V G++S+ D+ +  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 189
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 190 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 249
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 250 IPIVDDNDSLLDIYSRSDI 268
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------SLLDIYS 264
            I     R  +++     L +AL  L+ ++  ++P+VD                  +I  
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 265 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK-VMER 323
               T LA       I      +       Q  N  +     R  +          V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 324 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356
           +A   + +L ++  G   + G+I   D+ + L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 188
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 189 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 248
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 249 SIPIVDDNDSLLDIYSRSDI 268
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
                +    +L +A   + + D+ ++PI  D+D L  + +  DI               
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
              + +                        +  + +++  +    VRR+ ++     R+ 
Sbjct: 69  AGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RLV 110

Query: 344 GIISLSDVFRFL 355
           GI++ +D+ R L
Sbjct: 111 GIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 228 MLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 285
           + + + ++     ++ +   S  P+V   ++  L+    R D+    ++    Q  +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLANPGVRRLVIVEAG 338
           +I    +      P      +   +            P+  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 339 SKRVEGIISLSDVFRFL 355
             R+ GII+  DV + +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 276
           R+ +        +  TASL   L   V+    S   V      + I              
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIV------------- 46

Query: 277 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 336
                  ++    A               +          + +  E++    V RL++ E
Sbjct: 47  ----TTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 337 AGSKRVEGIISLSDVFR 353
                + G+IS +D+ R
Sbjct: 103 DD--EIIGVISATDILR 117

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAK 273
           ++G+   R    +  T++ G  L +L Q  +   P VD    N  L  I        L +
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71

Query: 274 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLAN 326
             +  +    E  +        +                +          L K     + 
Sbjct: 72  RISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSL 131

Query: 327 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357
            G+ R  +   G  ++ G+++L+++   + G
Sbjct: 132 LGLDRAYVTSMG--KLVGVVALAEIQAAIEG 160

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 228 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSD-ITALAKDKAYAQIHLDEM 285
           +   T  + ++L+LL   ++ S P+   + +    + + +D +  +      +       
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 93

Query: 286 NIHQALQLG-QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE----AGSK 340
            I +   LG ++    +G              L      ++    RR+ +++     GS+
Sbjct: 94  EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSE 153

Query: 341 RVEGIISLSDVFRFL 355
            +  +++   + +F+
Sbjct: 154 MIVSVLTQYRILKFI 168

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 276
           R+ +     F  +    ++  A+ ++ +  +  + + DDN + + + S   I        
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------- 55

Query: 277 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 336
                   +          D  P      +          +  V   L+  G+ R  +V+
Sbjct: 56  --------IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD 107

Query: 337 AGSKRVEGIISLSDVFRFLLG 357
               RV GI++L+D+ R+L  
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSR 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 283
                +   A L     ++ + ++ S+ +VD N  +  I  R  + A+ K K+      +
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 284 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 343
            M                              P+   +  +    +R L +V+     ++
Sbjct: 72  FMTAS-------------------LITIREDSPITGALALMRQFNIRHLPVVD-DKGNLK 111

Query: 344 GIISLSDVFRFL 355
           GIIS+ D+ R +
Sbjct: 112 GIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 11/142 (7%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274
           V  + +       ++     +   +  +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 275 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 334
             +  I  +E+       + +    +               PL + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 335 VEAGSKRVEGIISLSDVFRFLL 356
           V+     + G ++  ++   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 194 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 253
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 254 DDNDSLLDIYSRSDI-TALAKDK 275
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 196
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 197 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 256
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 257 DSLLDIYSRSDI 268
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 229 LRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEM 285
           L P   +        +     IPI D       L+ I S  DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 345
                               +   +      L +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 346 ISLSDVFR 353
           I+ +D+ +
Sbjct: 110 IARTDLKK 117

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 276
           ++ +   + F M+  +A++   L  + Q   +   + D       + +        +D  
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN-------KEDLL 54

Query: 277 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 336
              +     N                            D +   +          L +V+
Sbjct: 55  DLDLDSSVFNKVS----------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98

Query: 337 AGSKRVEGIISLSDVFRFLLG 357
               R++G +SL D    L+ 
Sbjct: 99  EE-MRLKGAVSLHDFLEALIE 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.92
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.88
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.87
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.87
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.86
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.86
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.85
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.85
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.84
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.83
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.83
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.81
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.81
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.81
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.8
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.79
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.79
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.79
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.76
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.76
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.73
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.73
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.72
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.71
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.71
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.71
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.7
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.69
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.66
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.66
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.59

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.92  E-value=4.6e-24  Score=179.25  Aligned_cols=167  Identities=20%  Similarity=0.348  Sum_probs=128.2

Q ss_pred             chhhHHHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHH
Q 018309           11 HNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR   90 (358)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~   90 (358)
                      +.+.++|.+|   |+.++|||+||   .++++++++++.|+.+|++.|.++++.++||||++.++++|++|..|++.++.
T Consensus         7 ~~~~~~i~~f---l~~~~~~dvm~---~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           7 KGALKEIQAF---IRSRTSYDVLP---TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHH---HHHSBHHHHSC---SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHH---HcCCEeeeeCC---CCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            4445555555   46999999997   55899999999999999999999999999999988889999999999999665


Q ss_pred             HhccCCCC-CCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCC
Q 018309           91 ELGTNGSN-LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA  169 (358)
Q Consensus        91 ~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~  169 (358)
                      ........ .............+........          .|..+++++++++++.+|+..|.+++++++||+|++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~  150 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET  150 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTT
T ss_pred             hccccccchhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCc
Confidence            54432211 1112222223333333322222          578899999999999999999999999999999864332


Q ss_pred             CCcceEEEeechHhHHHHHHhhccc
Q 018309          170 GSCQEILYLASLSDILKCICRHFKH  194 (358)
Q Consensus       170 g~~~~~vgilt~~di~~~l~~~~~~  194 (358)
                      + ..+++|++|++||++|++.++.+
T Consensus       151 ~-~~~vvgiiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         151 G-SEMIVSVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             C-CEEEEEEEEHHHHHHHHHTTCGG
T ss_pred             C-CCcEEEEEeHHHHHHHHHHhhhH
Confidence            2 23799999999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.8e-22  Score=163.46  Aligned_cols=153  Identities=30%  Similarity=0.498  Sum_probs=120.2

Q ss_pred             HHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCC
Q 018309           20 FLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~   99 (358)
                      |.+||+.++|+|+||   .+.++++++.++|+.+|++.|.++++.++||+|++.++++|+++..|++..+......... 
T Consensus         6 ~~~~l~~~t~~Dlm~---~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~-   81 (159)
T d2v8qe2           6 YTTFMKSHRCYDLIP---TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV-   81 (159)
T ss_dssp             HHHHHHHSBGGGGSC---SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHhcCCEEEeECC---CCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccc-
Confidence            566788999999996   5589999999999999999999999999999998889999999999999966544321110 


Q ss_pred             CHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEee
Q 018309          100 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  179 (358)
Q Consensus       100 ~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgil  179 (358)
                      ............+...  .          ...|..+++++++++++.+|+++|.+++++++||+|.  ++|   +++|++
T Consensus        82 ~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~Giv  144 (159)
T d2v8qe2          82 QIYELEEHKIETWREV--Y----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYIL  144 (159)
T ss_dssp             TCCCGGGCBHHHHHHH--H----------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEE
T ss_pred             hhhhhhhhhcccccce--e----------eeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEE
Confidence            0011112222222111  1          1257889999999999999999999999999999963  356   899999


Q ss_pred             chHhHHHHHHhhcc
Q 018309          180 SLSDILKCICRHFK  193 (358)
Q Consensus       180 t~~di~~~l~~~~~  193 (358)
                      |++||++|+..+.+
T Consensus       145 T~~dilk~l~~~~~  158 (159)
T d2v8qe2         145 THKRILKFLKLFIT  158 (159)
T ss_dssp             CHHHHHHHHHHHSC
T ss_pred             eHHHHHHHHHHHcC
Confidence            99999999987754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.87  E-value=2.1e-21  Score=158.57  Aligned_cols=133  Identities=25%  Similarity=0.568  Sum_probs=115.8

Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccccc
Q 018309          205 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  284 (358)
Q Consensus       205 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~  284 (358)
                      |++++.+|+|.         +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..+........   +
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~---~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---D   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGG---G
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccccc---c
Confidence            66777777775         68999999999999999999999999999999999999999999987765544333   4


Q ss_pred             ccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          285 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       285 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .++.+++....       .+..++++|++++++.++++.|.+++++++||+| ++|+++|+||++|+++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            67888776543       5566889999999999999999999999999999 58999999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.1e-21  Score=156.19  Aligned_cols=136  Identities=25%  Similarity=0.504  Sum_probs=109.1

Q ss_pred             cccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc
Q 018309          201 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  280 (358)
Q Consensus       201 ~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l  280 (358)
                      ++++|+++++++++         +++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+........
T Consensus         3 ~~~~~i~~l~~~~~---------~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL   73 (140)
T ss_dssp             GGGSBGGGSSCCBC---------SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             cccCcHHHhCCccC---------CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc
Confidence            46778888865544         479999999999999999999999999999999999999999999997765443332


Q ss_pred             ccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          281 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       281 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                         ...+.+.+....       .+..++++|++++++.++++.|.+++++++|||| ++|+++|+||.+||+++++
T Consensus        74 ---~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 ---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---CSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---ccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence               344555554322       3456789999999999999999999999999999 5899999999999999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=4.4e-22  Score=156.56  Aligned_cols=121  Identities=16%  Similarity=0.289  Sum_probs=104.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.........   .....+++       
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~---~~~~~v~~-------   71 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD---PNTATAGE-------   71 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---TTTSBHHH-------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCC---cccceEEE-------
Confidence            46778999999999999999999999999999999999999999999999998743322221   11345666       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                            +|.++++++++++++.+|++.|.+++++++||+|+  |+++|+||.+||++++
T Consensus        72 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 ------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             ------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             ------EeeccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence                  66778999999999999999999999999999993  8999999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.86  E-value=1.8e-21  Score=156.36  Aligned_cols=126  Identities=21%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc----ccccccHHHHHh
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI----HLDEMNIHQALQ  292 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l----~~~~~~v~~~l~  292 (358)
                      +++++|+++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++..........    ...+.++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            4678899999999999999999999999999999999999999999999999986654321111    011345555   


Q ss_pred             cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                                +|.+++.+|++++++.+|++.|.+++++++||+|+  |+++|+||.+||++++.+
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence                      78889999999999999999999999999999993  899999999999999864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.3e-21  Score=156.85  Aligned_cols=139  Identities=32%  Similarity=0.576  Sum_probs=117.3

Q ss_pred             cccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc
Q 018309          199 LPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA  278 (358)
Q Consensus       199 ~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~  278 (358)
                      ..++.++++++.++++.         +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++..+......
T Consensus         4 ~~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~   74 (145)
T d2v8qe1           4 PEFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN   74 (145)
T ss_dssp             CGGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC
T ss_pred             hHHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhccccc
Confidence            34567788888776553         688999999999999999999999999999999999999999998866554333


Q ss_pred             ccccccccHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          279 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       279 ~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      ..   +.++.+......       .|..++++|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++++.
T Consensus        75 ~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          75 NL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             ch---hhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            32   456666554332       5667899999999999999999999999999999 58999999999999999974

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=9.2e-22  Score=161.22  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=105.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccc-----------ccc
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-----------DEM  285 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~-----------~~~  285 (358)
                      ++.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.............           ...
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            466779999999999999999999999999999999999999999999999976443221111000           000


Q ss_pred             cHHHHHh-cCCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          286 NIHQALQ-LGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       286 ~v~~~l~-~~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                      ....+.. ....+..+. ++|++++.+|++++++.++++.|.+++++++||+| ++|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence            0000000 001122233 38889999999999999999999999999999999 5899999999999999885

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=3.8e-21  Score=155.04  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=107.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|++++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|++.........   ..+.++.+       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccc---cccccccc-------
Confidence            57788999999999999999999999999999999999999999999999998754322211   11345555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                            +|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                  7888999999999999999999999999999999 5899999999999999764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=2.3e-20  Score=148.39  Aligned_cols=121  Identities=19%  Similarity=0.354  Sum_probs=106.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      .|+++|+++++++++++++.+|++.|.+++++++||+|++|+++|++|..|++..+..+...    .+.++++       
T Consensus         6 pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~v~~-------   74 (132)
T d2yzia1           6 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP----YDIPVER-------   74 (132)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC----TTSBGGG-------
T ss_pred             cHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCc----cceeEee-------
Confidence            35666999999999999999999999999999999999999999999999999865433211    1355666       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                            +|.+++.++++++++.++++.|.+++++++||++  +|+++|+||.+|+++++.
T Consensus        75 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          75 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ------cccccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                  7888999999999999999999999999999877  499999999999999875

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.83  E-value=1.6e-20  Score=148.32  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=107.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      .|+++|.++++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+..+...     +.++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccc-----cchhhh-------
Confidence            57788999999999999999999999999999999998 58999999999999876543221     345555       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++.++++++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 58999999999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=1.5e-20  Score=148.59  Aligned_cols=115  Identities=12%  Similarity=0.260  Sum_probs=99.4

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309          224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  303 (358)
Q Consensus       224 ~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~  303 (358)
                      ++++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.........   .+.++.+             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~---~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPV---KDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCG---GGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccc---cceeEee-------------e
Confidence            4689999999999999999999999999997 689999999999987543222111   1345555             7


Q ss_pred             CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      |.+++.+|++++++.+|++.|.+++++++||+|+  |+++|+||.+|+++++++
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhC
Confidence            8889999999999999999999999999999993  899999999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=2.7e-20  Score=145.48  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309          218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  297 (358)
Q Consensus       218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~  297 (358)
                      |+++|+++++++++++|+.+|++.|.+++++++||++ +|+++|++|.+|+++.+..+..    ..+.++.+        
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~--------   68 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE--------   68 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH--------
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEee--------
Confidence            5678999999999999999999999999999999997 5899999999999986654432    22567787        


Q ss_pred             CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                           +|.+++.++++++++.+|++.|.+++++++||++  +|+++|++|.+|++++.
T Consensus        69 -----~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          69 -----VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAK  119 (120)
T ss_dssp             -----HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             -----ecccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcC
Confidence                 7778999999999999999999999999999987  38999999999999985

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3.2e-21  Score=151.30  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=87.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|++....          +.++.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----------~~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----------EEQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----------ccchhh-------
Confidence            356678889999999999999999999999999999999999999999999876321          122333       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|.+++++|++++++.+|++.|.+++++++||+| ++|+++|+||..||+++++.
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 58999999999999998864

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=5.2e-20  Score=146.38  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=103.8

Q ss_pred             cccccC--CCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-ccccccccHHHHHhc
Q 018309          217 RIGEAN--GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIHLDEMNIHQALQL  293 (358)
Q Consensus       217 ~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l~~~~~~v~~~l~~  293 (358)
                      +|+++|  .+.++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+...... .....+.++.+    
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----   78 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   78 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccc----
Confidence            345556  45789999999999999999999999999999999999999999999876533211 11122456676    


Q ss_pred             CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                               +|.+++.++++++++.++++.|.+++  .+||+| ++|+++|+||.+|+++++..
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          79 ---------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------cccccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence                     67778999999999999999998765  599999 58999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=5.2e-20  Score=148.70  Aligned_cols=134  Identities=7%  Similarity=0.116  Sum_probs=103.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc--C
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL--G  294 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~--~  294 (358)
                      .+.++|+.+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++......+....     .......  .
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~-----~~~~~~~~~~   79 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP-----KEELIRSSMK   79 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC------------CCC
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc-----hhHHHHhhhh
Confidence            35567899999999999999999999999999999999999999999999999866543322211     0110100  0


Q ss_pred             CCCCCCcc-cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          295 QDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       295 ~~~~~~~~-~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .....++. +| .+++++++++++.+|+++|.+++++++|||| ++|+++|+||.+||++++.+
T Consensus        80 ~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          80 RLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             hccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence            00011111 33 4668899999999999999999999999999 58999999999999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.81  E-value=3.6e-20  Score=148.94  Aligned_cols=127  Identities=11%  Similarity=0.154  Sum_probs=108.6

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc--ccccccccHHHHHhcC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLG  294 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~--~l~~~~~~v~~~l~~~  294 (358)
                      +|+++|+++++++++++++.+|++.|.+++++++||+|++++++|+++..|+.+........  .......++.+     
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~-----   77 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD-----   77 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH-----
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH-----
Confidence            46677999999999999999999999999999999999999999999999998865432211  11111345565     


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                              +|.++++++++++++.++++.|.+++++++||+| ++|+++|+||.+||++++.+
T Consensus        78 --------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd-~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 --------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             --------HhCcccccccccchhhHHHHHHHHcCCCEEEEEc-cCCEEEEEEEHHHHHHHHHH
Confidence                    7888999999999999999999999999999999 48999999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=4.9e-20  Score=145.43  Aligned_cols=115  Identities=16%  Similarity=0.261  Sum_probs=103.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  291 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l  291 (358)
                      +++.+|+++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.+++....          .+.++.+  
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~----------~~~~v~~--   69 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD--   69 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH--
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc----------ccEEhhh--
Confidence            46778999999999999999999999876     478999999999999999998887521          1467777  


Q ss_pred             hcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          292 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                                 +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++
T Consensus        70 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          70 -----------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             -----------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHH
T ss_pred             -----------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHH
Confidence                       8888999999999999999999999999999999 589999999999999876

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=1.1e-19  Score=143.33  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.8

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 018309          222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~  299 (358)
                      |..+++++++++++.+|+++|.+++++++||+|+  +|+++|++|.+|+.......         .+...          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4446789999999999999999999999999996  78999999999997732211         11111          


Q ss_pred             CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                        ..+..+++++++++++.+|+++|.+++++++|||| ++|+++|+||+.||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence              04567889999999999999999999999999999 5899999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=6.4e-20  Score=143.55  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +++++|.++++++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+++...          +.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccc-------
Confidence            356779999999999999999999999999999999999999999999999975211          234444       


Q ss_pred             CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                            +|..++.++++++++.++++.|.+++.+++||+| ++|+++|+||..|+++++..
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  6777899999999999999999999999999999 58999999999999999863

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=4.2e-20  Score=149.09  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=102.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  291 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l  291 (358)
                      +++++|+++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.+|+.....          +.++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHH--
Confidence            57888999999999999999999999877     4789999999999999999999865211          233444  


Q ss_pred             hcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          292 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                                 +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                       7888999999999999999999999999999999 5899999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.79  E-value=1.1e-18  Score=142.93  Aligned_cols=140  Identities=16%  Similarity=0.250  Sum_probs=107.8

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccc--c-ccccHHHH
Q 018309          216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIH--L-DEMNIHQA  290 (358)
Q Consensus       216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~~~~~~l~--~-~~~~v~~~  290 (358)
                      -+|+++|.++++++++++++.+|++.|.+++++++||+|+  ++.++|++|..|++..+.........  . ...+....
T Consensus        11 ~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   90 (160)
T d2d4za3          11 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEI   90 (160)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHH
T ss_pred             eEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchh
Confidence            4678889999999999999999999999999999999984  47899999999999866532211110  0 00111111


Q ss_pred             H----hcCCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          291 L----QLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       291 l----~~~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .    .......... .+|.++++++++++++.+|++.|.+++++++||+|+  |+++|+||++||++++.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          91 YRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHHHhCC
Confidence            1    1111111111 278889999999999999999999999999999983  999999999999999865

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.79  E-value=3.2e-19  Score=141.48  Aligned_cols=120  Identities=20%  Similarity=0.238  Sum_probs=102.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  294 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVv--d~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~  294 (358)
                      +|+++|.++++++++++++.+|++.|.+++++++||+  |++++++|+++..|+++.+..+....     ....      
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~-----~~~~------   70 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD-----GPAM------   70 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT-----SBSG------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc-----cccc------
Confidence            4678899999999999999999999999999999999  55689999999999998765432211     1111      


Q ss_pred             CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                              .+..++.++.+++++.+|+++|.+++++++||+| ++|+++|+||..||++++.
T Consensus        71 --------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          71 --------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             --------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             --------cccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                    3445788999999999999999999999999999 5899999999999998753

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=3.4e-19  Score=142.07  Aligned_cols=130  Identities=9%  Similarity=0.139  Sum_probs=103.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309          217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  296 (358)
Q Consensus       217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~  296 (358)
                      +|+++|.++++++++++++.+|++.|.+++++++||+|+  +++|+++..|++..+........   .......+..   
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---   73 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSC---SQGDLYHIST---   73 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---C---CHHHHHHHHT---
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccch---hhhhcccccc---
Confidence            366779889999999999999999999999999999974  79999999999986543221111   0000111110   


Q ss_pred             CCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          297 ANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       297 ~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                        .+. ++|..++.+|++++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        74 --~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          74 --TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             --SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGG
T ss_pred             --CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence              112 27888999999999999999999999999999999 58999999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=3.5e-19  Score=140.44  Aligned_cols=118  Identities=14%  Similarity=0.204  Sum_probs=101.6

Q ss_pred             CCCCCCCCCceEeCCCCCHHHHHHHHhhC-----CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccc
Q 018309          127 GNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  201 (358)
Q Consensus       127 ~~~~~~~~~~v~v~~~~sl~~al~~m~~~-----~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~  201 (358)
                      .+|.+|.++++++++++|+.+|++.|.++     +++.+||+|+   +|   +++|+++..+++.       .      .
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~-------~------~   62 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIV-------N------D   62 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTT-------S------C
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeecccc-------c------c
Confidence            45668999999999999999999999876     4789999975   45   8999999888764       0      0


Q ss_pred             ccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          202 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       202 ~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                      ..            ..++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|++.++.+.
T Consensus        63 ~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          63 DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cc------------EEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            12            245666999999999999999999999999999999999999999999999999977543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=1.6e-18  Score=136.59  Aligned_cols=119  Identities=21%  Similarity=0.303  Sum_probs=103.2

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309          128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  207 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~  207 (358)
                      ++++|.++++++++++++.+|+++|.+++++++||+++    |   +++|++|..|+++++.....        ...   
T Consensus         6 V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~---   67 (127)
T d2ef7a1           6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LET---   67 (127)
T ss_dssp             GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTC---
T ss_pred             HHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccc---
Confidence            34578999999999999999999999999999999964    4   79999999999997764321        122   


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                               .+.++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.
T Consensus        68 ---------~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          68 ---------KAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             ---------BGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ---------hhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence                     244457788999999999999999999999999999999999999999999999764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=7e-19  Score=141.83  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=102.7

Q ss_pred             CCCCCCCCCCceEeCCCCCHHHHHHHHhhCC-----cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcc
Q 018309          126 DGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  200 (358)
Q Consensus       126 d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~-----~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~  200 (358)
                      |.+|++|.++++++++++|+.+|++.|.+++     ++.+||+|+   +|   +++|+++.+|+.+.             
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~-------------   61 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA-------------   61 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTS-------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhc-------------
Confidence            4678899999999999999999999998874     788999975   56   89999999998651             


Q ss_pred             cccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          201 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       201 ~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ....            .+.++|.++++++.+++++.+|++.|.+++++++||||++|+++|+||.+|+++.+.+
T Consensus        62 ~~~~------------~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTTC------------BSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             cccc------------chHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            0122            3455688999999999999999999999999999999999999999999999987654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.4e-18  Score=140.95  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=101.6

Q ss_pred             ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccc----cccccHHHH
Q 018309          218 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIH----LDEMNIHQA  290 (358)
Q Consensus       218 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~~~~l~----~~~~~v~~~  290 (358)
                      +.|+|.  .+++++.+++++.+|++.|.+++++++||+|+ +++++|++|.+|++..+.........    .........
T Consensus        15 ~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (159)
T d2v8qe2          15 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETW   94 (159)
T ss_dssp             GGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHH
T ss_pred             EEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhcccc
Confidence            344463  35789999999999999999999999999975 68999999999998866432211110    001111110


Q ss_pred             -HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309          291 -LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  356 (358)
Q Consensus       291 -l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~  356 (358)
                       ....       ++|..++++|++++++.+|+++|.++++|++||+|+++|+++|+||.+||++++.
T Consensus        95 ~~~~~-------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          95 REVYL-------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HHHHS-------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             cceee-------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence             1111       1677889999999999999999999999999999855689999999999999874

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.6e-18  Score=135.75  Aligned_cols=134  Identities=13%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|..+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++....................+ 
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL-   81 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC-
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc-
Confidence            67889999999999999999999999999999976   45   899999999999988766543221111111111111 


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  275 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~  275 (358)
                         ....+.+.|. +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+.++
T Consensus        82 ---~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          82 ---IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             ---SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ---cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence               1123344443 467899999999999999999999999999999999999999999977643

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.1e-18  Score=142.53  Aligned_cols=137  Identities=13%  Similarity=0.157  Sum_probs=103.1

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCc------cc-
Q 018309          129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------PI-  201 (358)
Q Consensus       129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~------~~-  201 (358)
                      ..+|.++++++++++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++.+...........      .. 
T Consensus         7 ~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           7 EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC----------------
T ss_pred             HHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            3478999999999999999999999999999999975   45   89999999999875432211110000      00 


Q ss_pred             ----ccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          202 ----LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       202 ----~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                          ................+.++|++++.++.+++++.++++.|.+++++++||+|++|+++|++|++|+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                0000111111122346788899999999999999999999999999999999999999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=3.5e-18  Score=136.88  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=103.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      ++|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++..........        ...
T Consensus         6 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~~--------~~~   71 (139)
T d2o16a3           6 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQG--------DSL   71 (139)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             HhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhcc--------ccc
Confidence            378889999999999999999999999999999975   46   8999999999999887654321100        000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                         .....+.++|.+++.++++++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+.
T Consensus        72 ---~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          72 ---AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             ---ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence               111246667999999999999999999999999999999998 589999999999998664

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=5.1e-20  Score=143.88  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             CCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 018309          223 GRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  299 (358)
Q Consensus       223 ~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~  299 (358)
                      .++++++++++++.+|+++|.+++++++||+|+   +|+++|++|.+|+.......    .   +.++.+..        
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~----~---~~~~~~~~--------   67 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE----H---DRFLEEIM--------   67 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTTCCC-----------------------------CC--------
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc----c---CceeEEEE--------
Confidence            345679999999999999999999999999985   68999999999986432211    1   12222211        


Q ss_pred             CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309          300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  355 (358)
Q Consensus       300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~  355 (358)
                         .+..+++++++++++.+|++.|.+++++++|||| ++|+++|+||++||+++.
T Consensus        68 ---~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          68 ---TKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ---SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             ---eeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence               3455789999999999999999999999999999 589999999999999863

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=6.1e-19  Score=138.29  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|++++........               
T Consensus         6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~~---------------   64 (123)
T d1y5ha3           6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLDP---------------   64 (123)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCCT---------------
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCCc---------------
Confidence            57888999999999999999999999999999975   45   8999999999987443322110               


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                         ....++++|.++++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.
T Consensus        65 ---~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          65 ---NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             ---TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ---ccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence               11234566888999999999999999999999999999998 5899999999999974

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=4.2e-18  Score=136.88  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=102.7

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.+++.++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++.+......      ...      
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~~~------   68 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PDE------   68 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GGG------
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------ccc------
Confidence            478899999999999999999999999999999975   45   899999999998865432211      011      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                            ..++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.
T Consensus        69 ------~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          69 ------VPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------SBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ------cccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence                  2355668889999999999999999999999999999999999999999999998553

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=3.1e-17  Score=128.91  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      |...++++++++++.+|+++|.+++++++||+|+ ..+|   +++|++|..|+.+...            ...+.     
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~------------~~~~~-----   61 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISD------------YNAPI-----   61 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSC------------SSSBT-----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhc------------cCCce-----
Confidence            3445689999999999999999999999999964 2234   8999999999976210            11111     


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                            ....|..+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++...
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                  11225667889999999999999999999999999999999999999999999764

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.3e-17  Score=133.56  Aligned_cols=125  Identities=18%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .++..+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++........      .......
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~~   80 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGEA   80 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----C------CSBHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhcccccc------ccchhhh
Confidence            357889999999999999999999999999999975   45   89999999999998875543311      1111110


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            ......+..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        81 ------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          81 ------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  011222455788999999999999999999999999999999999999999999854

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.4e-17  Score=132.03  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      .+|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......       ...     
T Consensus         9 ~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~~-------~~~-----   70 (132)
T d2yzia1           9 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGLP-------YDI-----   70 (132)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCCC-------TTS-----
T ss_pred             HHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccCc-------cce-----
Confidence            378899999999999999999999999999999975   45   899999999999865432211       122     


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                             .++++|.+++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.+.+
T Consensus        71 -------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          71 -------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             -------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             -------eEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                   35566888999999999999999999999999999875 6999999999999997654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=1.4e-17  Score=139.12  Aligned_cols=134  Identities=12%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccc-ccccc-----cccccH-
Q 018309          218 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIH-----LDEMNI-  287 (358)
Q Consensus       218 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~-~~~l~-----~~~~~v-  287 (358)
                      +.++|.  .+++++.+++++.+|++.|.+++++++||+|+ +++++|++|..|++..+.... .....     ...... 
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLL  101 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchh
Confidence            334464  35899999999999999999999999999985 589999999999998553211 11000     001111 


Q ss_pred             --HHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCC----CCeEEEEEehHHHHHHhhcC
Q 018309          288 --HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG----SKRVEGIISLSDVFRFLLGV  358 (358)
Q Consensus       288 --~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~----~~~liGvis~~Dil~~~~~~  358 (358)
                        .......       +.|.+++++|++++++.+|++.|.++++|++||+|++    +++++|+||++||++++..+
T Consensus       102 ~~~~~~~~~-------~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         102 GLREVERKI-------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHHHHT-------TCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hhcccceee-------eecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence              1111111       1677899999999999999999999999999999942    23799999999999998653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=3.2e-18  Score=136.33  Aligned_cols=127  Identities=19%  Similarity=0.135  Sum_probs=102.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      ++|.++++++++++++.+|++.|.+++++++||+|+        +++|+++..++++++.........         ...
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~~---------~~~   67 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSCS---------QGD   67 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---CC---------HHH
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccchh---------hhh
Confidence            367788999999999999999999999999999953        699999999999876533222110         000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                      ........++++|..++.++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        68 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          68 LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            0011123567779999999999999999999999999999999999999999999999998654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.71  E-value=5.1e-17  Score=127.86  Aligned_cols=114  Identities=17%  Similarity=0.275  Sum_probs=96.4

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      .++++++++++++.+|+++|.+++++++||+++    |   +++|++|..|+++.+......      ...         
T Consensus        12 ~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~~------~~~---------   69 (127)
T d2rc3a1          12 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDKP------VKD---------   69 (127)
T ss_dssp             CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSSC------GGG---------
T ss_pred             CCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhccc------ccc---------
Confidence            357899999999999999999999999999963    4   899999999998854322211      011         


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                         ..+.++|++++.++.+++++.+|++.|.+++++++||+| +|+++|+||.+|+++..
T Consensus        70 ---~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          70 ---TQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ---SBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---eeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence               245666889999999999999999999999999999998 69999999999999853

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1.6e-17  Score=133.14  Aligned_cols=124  Identities=10%  Similarity=0.162  Sum_probs=104.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++|+.+|+++|.+++++++||+++   ++   +++|+++..|+++++......... .....       
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~-------   72 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYG-------   72 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHT-------
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccC-------
Confidence            57888999999999999999999999999999975   44   799999999999988654432110 01112       


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                           ..++++|.++++++.+++++.++++.|.+++++++||+|++|+++|+||.+|+++.+.
T Consensus        73 -----~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          73 -----KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             -----CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----CCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                 2455668889999999999999999999999999999999999999999999998664

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=3.4e-17  Score=127.77  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=99.4

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      ++|.+.++++++++|+.+|+++|.+++.+.+||+|+   +|   +++|+++..|++++             ....     
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~-------------~~~~-----   60 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDL-------------DLDS-----   60 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTS-------------CTTS-----
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhh-------------hccc-----
Confidence            367889999999999999999999999999999965   45   89999999999751             0122     


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                             ++.++|..++.++++++++.++++.|.+++...+||+|++|+++|++|..|+++.+.+
T Consensus        61 -------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          61 -------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             -------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             -------cccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence                   3455588889999999999999999999999999999999999999999999996643

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=2.8e-17  Score=128.07  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=98.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++|+.+|++.|.+++++.+||.++    |   +++|++|..|+++++......       ...      
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~~-------~~~------   64 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDDL-------AEV------   64 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCCT-------TTS------
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeeccccccccccc-------cce------
Confidence            58889999999999999999999999999999863    5   899999999999987654321       122      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                            .+.++|++++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|++++
T Consensus        65 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          65 ------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------eEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                  34555888999999999999999999999999999986 6899999999999975

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.70  E-value=7.7e-17  Score=131.72  Aligned_cols=140  Identities=11%  Similarity=0.038  Sum_probs=107.3

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc-
Q 018309          128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV-  206 (358)
Q Consensus       128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v-  206 (358)
                      ++++|.++++++++++++.+|+++|.+++++++||+|+. +++   .++|+++..|+++++.................. 
T Consensus        13 V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~-~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3          13 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             HHHhcCCCCeEECCCCcHHHHHHHHHhcCCCcccccccc-ccc---cccccchHHHHHHHHhhccccccccchhhccccc
Confidence            355899999999999999999999999999999999742 234   799999999999988765433211000000000 


Q ss_pred             --cc---cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          207 --SS---IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       207 --~~---l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                        ..   .........+.++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHh
Confidence              00   0011122345677889999999999999999999999999999997 69999999999999865

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.5e-17  Score=131.78  Aligned_cols=120  Identities=9%  Similarity=0.122  Sum_probs=99.2

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      ..+++++.+++++.+|+++|.+++++++||+|+   +|   +++|+++..|+++++........       ...      
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~~~~~~~~~~-------~~~------   71 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERIEF-------EKL------   71 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSBCG-------GGT------
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHHhhccccccc-------ccc------
Confidence            568899999999999999999999999999975   45   89999999999998764432210       000      


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                       ....++++|.++++++.+++++.+++..|.+++  .+||+|++|+++|+||.+|+++.+.+
T Consensus        72 -~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          72 -DQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             -TTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             -ccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence             112456668889999999999999999998765  59999999999999999999997643

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.69  E-value=5.7e-17  Score=128.23  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=98.0

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309          130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  209 (358)
Q Consensus       130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l  209 (358)
                      ++|.++++++++++|+.+|++.|.+++++++||++.+. .+   +++|+++..++++++.......        ..    
T Consensus         5 dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~~----   68 (131)
T d2riha1           5 ELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------GP----   68 (131)
T ss_dssp             GGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------SB----
T ss_pred             HhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------cc----
Confidence            47899999999999999999999999999999996422 34   7999999999999776443211        11    


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                               ...+..++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.
T Consensus        69 ---------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          69 ---------AMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ---------SGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ---------cccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                     11134467789999999999999999999999999999999999999999873

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.6e-17  Score=129.77  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309          131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  210 (358)
Q Consensus       131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~  210 (358)
                      +|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|++...             ...      
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~-------------~~~------   60 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNP-------------DEE------   60 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhh-------------ccc------
Confidence            46778999999999999999999999999999975   56   899999999987621             111      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309          211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  272 (358)
Q Consensus       211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~  272 (358)
                            .+.++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++..
T Consensus        61 ------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             ------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                  24455888899999999999999999999999999999999999999999999754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=3.1e-16  Score=127.40  Aligned_cols=123  Identities=22%  Similarity=0.211  Sum_probs=99.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      .++++++.+++++.+|++.|.+++++++||+|+   +|   +++|+++..|+++++.......      ...++.+..  
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~~------~~~~v~~~~--   76 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYSN------LDLSVGEAL--   76 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGGG------GGSBHHHHH--
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhccccccc------cccchhhhe--
Confidence            468999999999999999999999999999975   45   8999999999999876443211      122222220  


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                          .....+..++.++.+++++.++++.|.+++++++||+|++|+++|++|++|+++.+.
T Consensus        77 ----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          77 ----LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             ----HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                122235567889999999999999999999999999999999999999999998654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.8e-16  Score=127.60  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309          133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  212 (358)
Q Consensus       133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~  212 (358)
                      .++++++.+++|+.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......      ....++.+.   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            457899999999999999999999999999975   55   899999999998866432211      112222211   


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309          213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  273 (358)
Q Consensus       213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~  273 (358)
                         ......|..++.++.+++++.++++.|.+++++++||+|++|+++|+||.+||++.+-
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               1233446778899999999999999999999999999999999999999999998553

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.66  E-value=4.3e-18  Score=132.74  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309          132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  211 (358)
Q Consensus       132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i  211 (358)
                      |.+.++++++++++.+|+++|.+++++++||+|+....|   +++|++|.+|+.......          ...+....  
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~--   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI--   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C--
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE--
Confidence            344567999999999999999999999999997533345   899999999985422111          11222221  


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309          212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  271 (358)
Q Consensus       212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~  271 (358)
                              ..+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.
T Consensus        67 --------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 --------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             --------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             --------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                    1134568899999999999999999999999999999999999999999874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=129.49  Aligned_cols=129  Identities=15%  Similarity=0.218  Sum_probs=94.2

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh------cCCCCC
Q 018309          227 AMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ------LGQDAN  298 (358)
Q Consensus       227 ~~v~~~~~l~~a~~~m~~~~~~~vpVv--d~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~------~~~~~~  298 (358)
                      +.+.++.++.+|.++|.+++++++||+  +++|+++|++|.+|++..+....+............+..      ......
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            445678899999999999999999999  457899999999999986653222111000000000000      000001


Q ss_pred             CCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309          299 PSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  357 (358)
Q Consensus       299 ~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~  357 (358)
                      .+. ++|.+++++|.+++++.+++++|.+++++++||+|  +|+++|+||++||++++..
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            111 27888999999999999999999999999999988  3899999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=119.87  Aligned_cols=133  Identities=10%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             eEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcc----cc-ccccccccc
Q 018309          137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP----IL-QQPVSSIQL  211 (358)
Q Consensus       137 v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~----~~-~~~v~~l~i  211 (358)
                      +.+.+++|+.+|+++|.+++++++||++++ ++|   +++|++|.+|+++++............    .+ .........
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~-~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecC-CCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            456778899999999999999999999632 244   899999999999988654322111000    00 001111111


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309          212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  274 (358)
Q Consensus       212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~  274 (358)
                      ......++++|.++++++.+++++.+++++|.+++.+++||+| +|+++|+||++|+++.+.+
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            2223467889999999999999999999999999999999986 7899999999999997654