Citrus Sinensis ID: 018327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Secondary Structure (PSIPRED)
cEEEEEEcccccccccccccccccccEEccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEccEEccccHHHHHHHHHHccccEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEcHHHHHHccccccccccccHHHHHHcccEEEEEcccEEcccccHHHHHHHHHHHHHHHccccccccccccEEEccEEEccccEEccccEEcccEEEccccEEccccEEcccEEccccEEccccEEEccEEccccEEccccEEEccEEEccccEEcccEEEcccEEccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccHHHccccccccHHHcEEccEEHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHcccccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEcHHHHHHcccccccHHHHHHHHHHHcccEEEEEccccEEccccHHHHHHHHHHHHHHHccccccEcccccEEEccEEEccccEEccccEEcccEEEcccEEEcccEEEEEEEEEccEEEcccEEEEcEEEEccEEEccEEEEEcEEEEcccEEEccEEEEccEEEEcccEEccccccccEcc
Coil and Loop (DISEMBL)
MKALILvggfgtrlrpltlsvpkplvefankpMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIIcsqeteplgtagplALARdkliddtgepffvlnsdviseypfaEMIEFHkahggeasimvdepskyGVVVMEESTGkvekfvekpklfvgnkinagiyllnpavldrielrptsiekevfpkiaLEGKLFAMVLpgfwmdigqprdyITGLRLYLDSLRKKSSLKLATGANIVGNVLVHesaqigegcligpdvavgpgcvvesgvrlsrcTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDeiysnggvvlphkeikssilkpeivm
Flexible Loop (DISEMBL)
mkalilvggfgtrlrpltlsvPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKhacisssiigwhstVGQWARVENMTILGEDVHVCDEIYsnggvvlphkeikssilkpeivm
Low Complexity Region (SEG)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGlrlyldslrkksslklATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered region (IsUnstruct)
***LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI***********
Disordered Region (DISOPRED)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK*****LAT*ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISEMBL)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISPRO)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q6Z9A3	361	Probable mannose-1-phosph	yes	no	1.0	0.991	0.880	0.0
Q84JH5	361	Probable mannose-1-phosph	no	no	1.0	0.991	0.880	0.0
Q941T9	361	Probable mannose-1-phosph	yes	no	1.0	0.991	0.880	0.0
O22287	361	Mannose-1-phosphate guany	yes	no	1.0	0.991	0.886	0.0
Q9M2S0	364	Probable mannose-1-phosph	no	no	1.0	0.983	0.826	1e-175
Q8H1Q7	331	Probable mannose-1-phosph	no	no	0.907	0.981	0.756	1e-142
Q54K39	359	Mannose-1-phosphate guany	yes	no	0.994	0.991	0.626	1e-134
Q9Y5P6	360	Mannose-1-phosphate guany	yes	no	0.997	0.991	0.617	1e-130
Q68EY9	360	Mannose-1-phosphate guany	N/A	no	0.997	0.991	0.606	1e-130
Q68EQ1	360	Mannose-1-phosphate guany	yes	no	0.997	0.991	0.603	1e-129

>sp|Q6Z9A3|GMPP3_ORYSJ Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/361 (88%), Positives = 345/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           +I+FHK HGGEA+IMV   DEPSKYGVVVMEE+TG VEKFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIEL+PTSIEKEVFP+I+ + KLFAMVLPGFWMD+GQPRDYITGLRLYLDSLRK+
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGVRIKK
Sbjct: 241 SANRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGV+LPHKEIKSSILKPEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVILPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3

>sp|Q84JH5|GMPP1_ORYSJ Probable mannose-1-phosphate guanylyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0268400 PE=2 SV=1

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/361 (88%), Positives = 343/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+F NKPMILHQIEALK VGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE+KLGIKI CSQETEPLGTAGPLALARDKL D +G+PFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           +I+FHK+HGGEA+IMV   DEPSKYGVVVME+ T KVE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIEL+PTSIEKEVFP+IA +  LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           +  KLA+GA+++GNVLVHE+A IGEGCLIGPDVAVGPGCVVE+GVRLSRCTVMRG R+KK
Sbjct: 241 APAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVG WARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os01g0847200 PE=2 SV=1

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/361 (88%), Positives = 344/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           +I+FHK+HGGEA+IMV   DEPSKYGVVVMEE TG VEKFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 LIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIEL+PTSIEKEVFP+IA + KLFA+VLPGFWMD+GQPRDYITGLRLYLDSLRK+
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGV IKK
Sbjct: 241 STNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/361 (88%), Positives = 338/361 (93%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           M+EFHK+HGGEASIMV   DEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           S  KL +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct: 241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9M2S0|GMPP2_ARATH Probable mannose-1-phosphate guanylyltransferase 2 OS=Arabidopsis thaliana GN=At3g55590 PE=2 SV=1

 Score =  614 bits (1583), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/364 (82%), Positives = 333/364 (91%), Gaps = 6/364 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
           MKALILVGGFGTRLRPLTLS+PKPLV+FANKPMILHQIEALKA+GV EVVLAINY+PE  
Sbjct: 1   MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60

Query: 59  -VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
            VM  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP
Sbjct: 61  LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120

Query: 118 FAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
             EMI FH AHGGEASIMV   DEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180

Query: 175 LLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSL 234
           LLNP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITGLRLYLDSL
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240

Query: 235 RKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 294
           RKKS  KLATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV 
Sbjct: 241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300

Query: 295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKP 354
           +K++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP
Sbjct: 301 VKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKP 360

Query: 355 EIVM 358
           +IVM
Sbjct: 361 DIVM 364

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q8H1Q7|GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 OS=Arabidopsis thaliana GN=At4g30570 PE=2 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/329 (75%), Positives = 285/329 (86%), Gaps = 4/329 (1%)

Query: 21  VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ 79
           +PKPLV+F NKPMILHQIEALK  GVTEVVLAIN+Q PEVMLNF+KE+E KL IKI  SQ
Sbjct: 1   MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60

Query: 80  ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--- 136
           ETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  EMIEFHK +  EASIMV   
Sbjct: 61  ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120

Query: 137 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVF 196
           D+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL+P+VLDRIELR TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180

Query: 197 PKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE 256
           PKIA E KL+AMVLPGFWMDIGQP+DYITG R+YL+SLR+K+  +LATG NI+GNVLVHE
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240

Query: 257 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316
           SA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK+HACIS+SI+GW STVG+WA
Sbjct: 241 SAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWA 300

Query: 317 RVENMTILGEDVHVCDEIYSNGGVVLPHK 345
           RV N+T+LG+DV+V D    N GVV+  +
Sbjct: 301 RVFNITVLGKDVNVADAEVYNSGVVIEEQ 329

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q54K39|GMPPB_DICDI Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB PE=2 SV=1

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/361 (62%), Positives = 290/361 (80%), Gaps = 5/361 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKP+VEFANK MILHQIEAL  +GV EVVLA+NY+P++M
Sbjct: 1   MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +L+ +E KLGIKI  S ET PLGTAGPLALARD L D  GEPFFVLNSD+I ++PFA+
Sbjct: 61  SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARDLLND--GEPFFVLNSDIICDFPFAD 118

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++ FHK+HGGE +IMV   +EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ N
Sbjct: 119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G+ LYL+SL+ K
Sbjct: 179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
               LATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I K
Sbjct: 239 QPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGK 298

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           ++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI+
Sbjct: 299 NSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEII 358

Query: 358 M 358
           M
Sbjct: 359 M 359

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/361 (61%), Positives = 285/361 (78%), Gaps = 4/361 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct: 1   MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct: 61  EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           M++FH+ HG E SI+V   +EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           PAVL RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG+ L+L SLR+K
Sbjct: 180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
              +L +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ 
Sbjct: 240 QPERLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRS 299

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query: 358 M 358
           M
Sbjct: 360 M 360

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EY9|GMPBA_XENLA Mannose-1-phosphate guanyltransferase beta-A OS=Xenopus laevis GN=gmppb-a PE=2 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/361 (60%), Positives = 286/361 (79%), Gaps = 4/361 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLSVPKPLV+F NKP++LHQ+EAL   GVT V+LA++Y  +++
Sbjct: 1   MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAGVTHVILAVSYMSDML 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  EPFFVLNSDVI ++PF +
Sbjct: 61  EKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSEPFFVLNSDVICDFPFED 119

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           M+ FHK HG E +I+V   +EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +
Sbjct: 120 MVRFHKHHGKEGTIVVTKVEEPSKYGVVVYETESGQIQRFVEKPQVFVSNKINSGLYIFS 179

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           PAVLDRI+LRPTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG+ +YL S+R+K
Sbjct: 180 PAVLDRIQLRPTSIEKEIFPAMAQEGQLYAMELQGFWMDIGQPKDFLTGMCMYLQSVRQK 239

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
               L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCTVM+G R+  
Sbjct: 240 HPEWLHAGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTVMKGSRLHS 299

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           H+ + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRII 359

Query: 358 M 358
           M
Sbjct: 360 M 360

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EQ1|GMPPB_XENTR Mannose-1-phosphate guanyltransferase beta OS=Xenopus tropicalis GN=gmppb PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/361 (60%), Positives = 285/361 (78%), Gaps = 4/361 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTLSVPKPLV+F NKP++LHQ+EAL   GV  V+LA++Y  +++
Sbjct: 1   MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAGVNHVILAVSYMSDML 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  +PFFVLNSDVI ++PF E
Sbjct: 61  EKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSDPFFVLNSDVICDFPFEE 119

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           M+ FHK HG E +I+V   +EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +
Sbjct: 120 MVRFHKHHGKEGTIVVTKVEEPSKYGVVVYEAESGQIQRFVEKPQVFVSNKINSGLYIFS 179

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           PAVLDRI+LRPTSIEKE+FP +A EG+LFAM L GFWMDIGQP+D++TG+ +YL S+R+K
Sbjct: 180 PAVLDRIQLRPTSIEKEIFPAMAQEGQLFAMELQGFWMDIGQPKDFLTGMCMYLQSVRQK 239

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
               L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCT+M+G R+  
Sbjct: 240 HPEWLHVGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTIMKGSRLHS 299

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           H+ + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct: 300 HSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRII 359

Query: 358 M 358
           M
Sbjct: 360 M 360

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
319739577	361	putative GDP-mannose pyrophosphorylase [	1.0	0.991	0.980	0.0
225449380	361	PREDICTED: mannose-1-phosphate guanylylt	1.0	0.991	0.933	0.0
113952525	361	GDP-D-mannose pyrophosphorylase [Viola b	1.0	0.991	0.925	0.0
224038262	361	GDP-D-mannose pyrophosphorylase [Actinid	1.0	0.991	0.922	0.0
255566484	361	mannose-1-phosphate guanyltransferase, p	1.0	0.991	0.911	0.0
357492373	361	Mannose-1-phosphate guanyltransferase [M	1.0	0.991	0.914	0.0
218117841	361	GDP-D-mannose pyrophosphorylase [Prunus	1.0	0.991	0.916	0.0
80973464	361	GDP-mannose pyrophosphorylase [Malpighia	1.0	0.991	0.903	0.0
4103324	361	GDP-mannose pyrophosphorylase [Solanum t	1.0	0.991	0.914	0.0
350537127	361	GDP-mannose pyrophosphorylase [Solanum l	1.0	0.991	0.911	0.0

>gi|319739577|gb|ADV59923.1| putative GDP-mannose pyrophosphorylase [Citrus unshiu]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/361 (98%), Positives = 355/361 (98%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE
Sbjct: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHKAHGGEASIMV   DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLATGANIVGNVLVHESAQIGE CLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSFKLATGANIVGNVLVHESAQIGEECLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449380|ref|XP_002282422.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/361 (93%), Positives = 350/361 (96%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKAVGV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHKAHGGEASIMV   DEPSKYGVVVMEES G+V++FVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIELRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLA+GA+IVGNVLV ESA+IGEGCLIGPDVA+GPGCVVE+GVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLASGAHIVGNVLVDESAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113952525|gb|ABI48955.1| GDP-D-mannose pyrophosphorylase [Viola baoshanensis]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/361 (92%), Positives = 346/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL  D+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKQFETKLGITITCSQETEPLGTAGPLALARDKLTGDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHK+HGGEASIMV   DEPSKYGVVVMEESTGKV+KFVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVDKFVEKPKIFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLD IELRPTSIEKEVFPKIA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDLIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLATGA+IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLATGASIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSI+GWHSTVGQWARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIVGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Viola baoshanensis

Species: Viola baoshanensis

Genus: Viola

Family: Violaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224038262|gb|ACN38266.1| GDP-D-mannose pyrophosphorylase [Actinidia latifolia]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/361 (92%), Positives = 347/361 (96%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KLGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFETKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHK+HGGEASIMV   DEPSKYGVVVMEESTG+VEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAGEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           +S KLATG +IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 TSSKLATGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Actinidia latifolia

Species: Actinidia latifolia

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566484|ref|XP_002524227.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223536504|gb|EEF38151.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/361 (91%), Positives = 348/361 (96%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLID++G+PFFVLNSDVISEYP  E
Sbjct: 61  LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDESGDPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHKAHGGEASIMV   DEPSKYGVVVMEESTGKVE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIEL+PTSIEKEVFPKIA + +LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELKPTSIEKEVFPKIAADKQLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS +LA GA++VGNVL+ E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSRLANGAHVVGNVLIDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSI+GWHSTVGQW R+ENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISSSIVGWHSTVGQWTRIENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492373|ref|XP_003616475.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] gi|49246467|gb|AAT58365.1| GMPase [Medicago sativa] gi|355517810|gb|AES99433.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/361 (91%), Positives = 348/361 (96%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKATGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVIS+YP  E
Sbjct: 61  LNFLKDFEAKLGITISCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISDYPLKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHK+HGGEASIMV   DEPSKYGVVVMEE+TG+VEKFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLA G+NIVGNV+V E+A+IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLAGGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK++ILKPEIV
Sbjct: 301 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218117841|dbj|BAH03298.1| GDP-D-mannose pyrophosphorylase [Prunus persica]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/361 (91%), Positives = 345/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           + FLKEFE K+GIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF +
Sbjct: 61  MTFLKEFETKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKQ 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHK+HGGEASIMV   DEPSKYGVVVMEESTGKV+KFVEKPKLFVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIELRPTSIEKEVFP IA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 
Sbjct: 181 PSVLDRIELRPTSIEKEVFPNIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLA G+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSSKLARGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACIS SIIGWHSTVGQWARVENMTILGEDVHV DEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVSDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpighia glabra] gi|161898831|gb|ABX80393.1| GDP-mannose pyrophosphorylase [Malpighia glabra]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/361 (90%), Positives = 346/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLS PKPLVEFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKLID++GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKDFEKKLDIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MIEFHK HGGEASIMV   DEPSKYGVVVMEESTG+VE+FVEKPK+FVGNKINAGIYLLN
Sbjct: 121 MIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGRVERFVEKPKIFVGNKINAGIYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRIELRPTSIEKEVFPKIA +  L+AMVLPGFWMDIGQP+DYITGLRLYLDSLRKK
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAADNSLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKK 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLATG+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSTKLATGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HAC+SSSIIGWHSTVGQWARVENMTILGEDVH+CDE+YSNGGVVLPHKEIKSSI+KPEIV
Sbjct: 301 HACVSSSIIGWHSTVGQWARVENMTILGEDVHLCDEVYSNGGVVLPHKEIKSSIIKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Malpighia glabra

Species: Malpighia glabra

Genus: Malpighia

Family: Malpighiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4103324|gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/361 (91%), Positives = 346/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEA LGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEASLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MI+FHK+HGGEAS+MV   DEPSKYGVVVMEESTG+VE+FVEKPKLFVGNKINAG YLLN
Sbjct: 121 MIQFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERFVEKPKLFVGNKINAGFYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRI+LRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSL+K 
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLKKH 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLA+G +IVGNV+V ESA+IGEGCLIGPDVA+G GCV+ESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLASGPHIVGNVIVDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACIS SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537127|ref|NP_001234025.1| GDP-mannose pyrophosphorylase [Solanum lycopersicum] gi|57340416|gb|AAT37498.2| GDP-mannose pyrophosphorylase [Solanum lycopersicum]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/361 (91%), Positives = 346/361 (95%), Gaps = 3/361 (0%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           LNFLKEFEA LGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF E
Sbjct: 61  LNFLKEFEASLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           MI+FHK+HGGEAS+MV   DEPSKYGVVVMEESTG+VE+FVEKPKLFVGNKINAG YLLN
Sbjct: 121 MIQFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERFVEKPKLFVGNKINAGFYLLN 180

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 237
           P+VLDRI+LRPTSIEKEVFPKIA E KL+AMVLPGFWMD+GQPRDYITGLRLYLDSL+K 
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDVGQPRDYITGLRLYLDSLKKH 240

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
           SS KLA+G +IVGNV+V ESA+IGEGCLIGPDVA+G GCV+ESGVRLSRCTVMRGVRIKK
Sbjct: 241 SSPKLASGPHIVGNVIVDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKK 300

Query: 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
           HACIS SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV
Sbjct: 301 HACISGSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 360

Query: 358 M 358
           M
Sbjct: 361 M 361

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2005504	361	CYT1 "CYTOKINESIS DEFECTIVE 1"	1.0	0.991	0.847	3.1e-161
TAIR|locus:2100001	364	AT3G55590 [Arabidopsis thalian	1.0	0.983	0.788	7.6e-151
TAIR|locus:2118671	331	AT4G30570 [Arabidopsis thalian	0.896	0.969	0.743	2.6e-125
DICTYBASE|DDB_G0287619	359	gmppB "mannose-1-phosphate gua	0.994	0.991	0.606	7.7e-119
UNIPROTKB|Q9Y5P6	360	GMPPB "Mannose-1-phosphate gua	0.997	0.991	0.598	8.2e-115
UNIPROTKB|F1N7H5	360	GMPPB "Mannose-1-phosphate gua	0.997	0.991	0.598	1e-114
UNIPROTKB|E2R2I6	360	GMPPB "Uncharacterized protein	0.997	0.991	0.590	3.5e-114
UNIPROTKB|F1SPR4	360	GMPPB "Mannose-1-phosphate gua	0.997	0.991	0.590	3.5e-114
MGI|MGI:2660880	360	Gmppb "GDP-mannose pyrophospho	0.997	0.991	0.590	7.3e-114
UNIPROTKB|Q2YDJ9	360	GMPPB "Mannose-1-phosphate gua	0.997	0.991	0.592	9.4e-114

TAIR|locus:2005504 CYT1 "CYTOKINESIS DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 306/361 (84%), Positives = 324/361 (89%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct:     1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             LNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  E
Sbjct:    61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M+EFHK+HGGEASIMV   DEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLLN
Sbjct:   121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             P+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITG           
Sbjct:   181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIKK
Sbjct:   241 SPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKK 300

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             HACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEIV
Sbjct:   301 HACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIV 360

Query:   358 M 358
             M
Sbjct:   361 M 361

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISS;IMP

GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP

GO:0030244 "cellulose biosynthetic process" evidence=RCA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2100001 AT3G55590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
 Identities = 287/364 (78%), Positives = 319/364 (87%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
             MKALILVGGFGTRLRPLTLS+PKPLV+FANKPMILHQIEALKA+GV EVVLAINY+PE  
Sbjct:     1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60

Query:    59 -VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
              VM  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP
Sbjct:    61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120

Query:   118 FAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
               EMI FH AHGGEASIMV   DEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIY
Sbjct:   121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180

Query:   175 LLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXX 234
             LLNP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITG        
Sbjct:   181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240

Query:   235 XXXXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 294
                     ATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV 
Sbjct:   241 RKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVH 300

Query:   295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKP 354
             +K++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP
Sbjct:   301 VKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKP 360

Query:   355 EIVM 358
             +IVM
Sbjct:   361 DIVM 364

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2118671 AT4G30570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 243/327 (74%), Positives = 274/327 (83%)

Query:    21 VPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ 79
             +PKPLV+F NKPMILHQIEALK  GVTEVVLAIN+Q PEVMLNF+KE+E KL IKI  SQ
Sbjct:     1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60

Query:    80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--- 136
             ETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  EMIEFHK +  EASIMV   
Sbjct:    61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120

Query:   137 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVF 196
             D+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL+P+VLDRIELR TSIEKE+F
Sbjct:   121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180

Query:   197 PKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXATGANIVGNVLVHE 256
             PKIA E KL+AMVLPGFWMDIGQP+DYITG                ATG NI+GNVLVHE
Sbjct:   181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVLVHE 240

Query:   257 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316
             SA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK+HACIS+SI+GW STVG+WA
Sbjct:   241 SAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKEHACISNSIVGWDSTVGRWA 300

Query:   317 RVENMTILGEDVHVCD-EIYSNGGVVL 342
             RV N+T+LG+DV+V D E+Y N GVV+
Sbjct:   301 RVFNITVLGKDVNVADAEVY-NSGVVI 326

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

DICTYBASE|DDB_G0287619 gmppB "mannose-1-phosphate guanylyltransferase beta" [Dictyostelium discoideum (taxid:44689)]

 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 219/361 (60%), Positives = 282/361 (78%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGGFGTRLRPLTLS PKP+VEFANK MILHQIEAL  +GV EVVLA+NY+P++M
Sbjct:     1 MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
               +L+ +E KLGIKI  S ET PLGTAGPLALARD L++D GEPFFVLNSD+I ++PFA+
Sbjct:    61 SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARD-LLND-GEPFFVLNSDIICDFPFAD 118

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             ++ FHK+HGGE +IMV   +EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ N
Sbjct:   119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             P +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G           
Sbjct:   179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                  ATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I K
Sbjct:   239 QPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIGK 298

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             ++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI+
Sbjct:   299 NSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEII 358

Query:   358 M 358
             M
Sbjct:   359 M 359

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9Y5P6 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Homo sapiens (taxid:9606)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 216/361 (59%), Positives = 274/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             PAVL RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ 
Sbjct:   240 QPERLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1N7H5 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)]

 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 216/361 (59%), Positives = 274/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E KLGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG+V +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             P+VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV  SA+IGE C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPEQLCSGPGIVGNVLVDPSARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2R2I6 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 213/361 (59%), Positives = 273/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+LN
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILN 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             P VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 QPEQLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F1SPR4 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 213/361 (59%), Positives = 274/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPLV+F NKP++LHQ+EAL + GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T EPFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             PAVL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 QPEQLCSGPGIVGNVLVDPSARIGKNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:2660880 Gmppb "GDP-mannose pyrophosphorylase B" [Mus musculus (taxid:10090)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 213/361 (59%), Positives = 273/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS PKPLV+F NKP++LHQ+EAL A GV  V+LA++Y  +++
Sbjct:     1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             PAVL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PAVLQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPERLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q2YDJ9 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 214/361 (59%), Positives = 272/361 (75%)

Query:     1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
             MKALILVGG+GTRLRPLTLS+PKPL +F NKP++LHQ+EAL A GV  V+LA++Y  +V+
Sbjct:     1 MKALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60

Query:    61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                +K  E KLGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  
Sbjct:    61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119

Query:   121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
             M++FH+ HG E SI+V   +EPSKYGVVV E  TG+V +FVEKP++FV NKINAG+Y+L+
Sbjct:   120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179

Query:   178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 237
             P+VL RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG           
Sbjct:   180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLKSLRQK 239

Query:   238 XXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297
                   +G  IVGNVLV   A+IGE C IGP+V++GPG VVE GV + RCTV+R   I+ 
Sbjct:   240 HPEQLCSGPGIVGNVLVDPRARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRS 299

Query:   298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357
             H+ + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+
Sbjct:   300 HSWLESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRII 359

Query:   358 M 358
             M
Sbjct:   360 M 360

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O93827	MPG1_CANAL	2, ., 7, ., 7, ., 1, 3	0.5592	0.9972	0.9861	N/A	no
Q8H1Q7	GMPP3_ARATH	2, ., 7, ., 7, ., 1, 3	0.7568	0.9078	0.9818	no	no
Q68EY9	GMPBA_XENLA	2, ., 7, ., 7, ., 1, 3	0.6066	0.9972	0.9916	N/A	no
O74484	MPG1_SCHPO	2, ., 7, ., 7, ., 1, 3	0.6071	0.9972	0.9834	yes	no
Q4I1Y5	MPG1_GIBZE	2, ., 7, ., 7, ., 1, 3	0.5917	0.9972	0.9807	yes	no
Q2YDJ9	GMPPB_BOVIN	2, ., 7, ., 7, ., 1, 3	0.6121	0.9972	0.9916	yes	no
Q2UJU5	MPG1_ASPOR	2, ., 7, ., 7, ., 1, 3	0.5808	0.9972	0.9807	yes	no
O74624	MPG1_HYPJE	2, ., 7, ., 7, ., 1, 3	0.5890	0.9972	0.9807	N/A	no
Q7RVR8	MPG1_NEUCR	2, ., 7, ., 7, ., 1, 3	0.6065	0.9944	0.9780	N/A	no
Q9P8N0	MPG1_PICAN	2, ., 7, ., 7, ., 1, 3	0.5863	0.9972	0.9807	N/A	no
A3QMC8	GMPPB_CAEEL	2, ., 7, ., 7, ., 1, 3	0.5476	0.9944	0.9753	yes	no
Q9M2S0	GMPP2_ARATH	2, ., 7, ., 7, ., 1, 3	0.8269	1.0	0.9835	no	no
Q68EQ1	GMPPB_XENTR	2, ., 7, ., 7, ., 1, 3	0.6038	0.9972	0.9916	yes	no
Q5B1J4	MPG1_EMENI	2, ., 7, ., 7, ., 1, 3	0.5890	0.9972	0.9807	yes	no
Q6BN12	MPG1_DEBHA	2, ., 7, ., 7, ., 1, 3	0.5454	0.9972	0.9861	yes	no
Q8BTZ7	GMPPB_MOUSE	2, ., 7, ., 7, ., 1, 3	0.6094	0.9972	0.9916	yes	no
Q54K39	GMPPB_DICDI	2, ., 7, ., 7, ., 1, 3	0.6260	0.9944	0.9916	yes	no
Q7JZB4	GMPPB_DROME	2, ., 7, ., 7, ., 1, 3	0.5888	0.9916	0.9620	yes	no
Q9Y5P6	GMPPB_HUMAN	2, ., 7, ., 7, ., 1, 3	0.6177	0.9972	0.9916	yes	no
P0C5I2	GMPPB_PIG	2, ., 7, ., 7, ., 1, 3	0.6094	0.9972	0.9916	yes	no
Q6DBU5	GMPPB_DANRE	2, ., 7, ., 7, ., 1, 3	0.5872	0.9972	0.9916	yes	no
Q70SJ2	MPG1_KLULA	2, ., 7, ., 7, ., 1, 3	0.5883	0.9972	0.9889	yes	no
Q61S97	GMPPB_CAEBR	2, ., 7, ., 7, ., 1, 3	0.5585	0.9916	0.9752	N/A	no
Q6Z9A3	GMPP3_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8808	1.0	0.9916	yes	no
Q9Y725	MPG11_CANGA	2, ., 7, ., 7, ., 1, 3	0.5635	0.9972	0.9889	yes	no
Q6CCU3	MPG1_YARLI	2, ., 7, ., 7, ., 1, 3	0.5890	0.9944	0.9807	yes	no
P0CO20	MPG1_CRYNJ	2, ., 7, ., 7, ., 1, 3	0.5835	0.9972	0.9807	yes	no
P0CO21	MPG1_CRYNB	2, ., 7, ., 7, ., 1, 3	0.5835	0.9972	0.9807	N/A	no
Q4U3E8	MPG1_ASPFU	2, ., 7, ., 7, ., 1, 3	0.5835	0.9972	0.9807	yes	no
P41940	MPG1_YEAST	2, ., 7, ., 7, ., 1, 3	0.5994	0.9972	0.9889	yes	no
O22287	GMPP1_ARATH	2, ., 7, ., 7, ., 1, 3	0.8864	1.0	0.9916	yes	no
Q84JH5	GMPP1_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8808	1.0	0.9916	no	no
Q295Y7	GMPPB_DROPS	2, ., 7, ., 7, ., 1, 3	0.5861	0.9916	0.9568	yes	no
Q941T9	GMPP2_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8808	1.0	0.9916	yes	no
Q752H4	MPG1_ASHGO	2, ., 7, ., 7, ., 1, 3	0.5745	0.9972	0.9889	yes	no
A2VD83	GMPBB_XENLA	2, ., 7, ., 7, ., 1, 3	0.5983	0.9972	0.9916	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.976
3rd Layer	2.7.7.13	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	1e-160
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	1e-105
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	7e-77
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	2e-63
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	1e-59
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	3e-59
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	7e-53
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	8e-52
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	2e-49
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	5e-45
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	8e-41
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	7e-38
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	2e-34
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	5e-29
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	5e-28
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	9e-28
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	1e-27
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	9e-25
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	3e-23
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	4e-23
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	2e-22
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	2e-21
COG1213	239	COG1213, COG1213, Predicted sugar nucleotidyltrans	4e-20
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	5e-20
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	5e-20
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	1e-19
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	3e-17
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	5e-17
COG4750	231	COG4750, LicC, CTP:phosphocholine cytidylyltransfe	8e-17
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	1e-16
TIGR01099	260	TIGR01099, galU, UTP-glucose-1-phosphate uridylylt	1e-15
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	2e-15
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	2e-14
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	7e-14
cd04197	217	cd04197, eIF-2B_epsilon_N, The N-terminal domain o	3e-13
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	3e-13
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	1e-11
PRK15480	292	PRK15480, PRK15480, glucose-1-phosphate thymidylyl	1e-11
PRK10122	297	PRK10122, PRK10122, GalU regulator GalF; Provision	2e-11
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	5e-11
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	2e-10
TIGR01105	297	TIGR01105, galF, UTP-glucose-1-phosphate uridylylt	2e-10
PRK14359	430	PRK14359, glmU, bifunctional N-acetylglucosamine-1	3e-10
TIGR01207	286	TIGR01207, rmlA, glucose-1-phosphate thymidylyltra	1e-09
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	2e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	1e-08
cd02509	274	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan	2e-08
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	2e-08
cd04183	231	cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv	5e-08
COG2266	177	COG2266, COG2266, GTP:adenosylcobinamide-phosphate	1e-07
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	2e-07
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-07
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	9e-07
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	9e-07
PRK13389	302	PRK13389, PRK13389, UTP--glucose-1-phosphate uridy	1e-06
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	2e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	3e-06
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	3e-06
COG0836	333	COG0836, {ManC}, Mannose-1-phosphate guanylyltrans	3e-06
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	4e-06
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	7e-06
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	8e-06
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-05
PRK00317	193	PRK00317, mobA, molybdopterin-guanine dinucleotide	1e-05
PRK09451	456	PRK09451, glmU, bifunctional N-acetylglucosamine-1	1e-05
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	2e-05
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	2e-05
cd02508	200	cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory	2e-05
cd02503	181	cd02503, MobA, MobA catalyzes the formation of mol	2e-05
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	3e-05
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	3e-05
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	4e-05
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	7e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	2e-04
TIGR00453	217	TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha	2e-04
COG1211	230	COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith	2e-04
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	4e-04
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	5e-04
PRK00155	227	PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat	5e-04
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	0.001
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	0.001
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	0.001
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.001
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	0.002
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	0.002
TIGR02665	186	TIGR02665, molyb_mobA, molybdopterin-guanine dinuc	0.002
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.002
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	0.003
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.003
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	0.003
PRK14489	366	PRK14489, PRK14489, putative bifunctional molybdop	0.004
PRK05450	245	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt	0.004
cd02517	239	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca	0.004

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score =  448 bits (1155), Expect = e-160
 Identities = 170/234 (72%), Positives = 203/234 (86%), Gaps = 4/234 (1%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKALILVGG+GTRLRPLTL+VPKPLVEF NKPMI HQIEAL   GV E++LA+NY+PE M
Sbjct: 1   MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           + FLKE+E KLGIKI  S ETEPLGTAGPLALARD L DD  EPFFVLNSDVI ++P AE
Sbjct: 61  VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAE 119

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           +++FHK HG E +I+   V++PSKYGVVV +E+TG++E+FVEKPK+FVGNKINAGIY+LN
Sbjct: 120 LLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILN 179

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 231
           P+VLDRI LRPTSIEKE+FPK+A EG+L+A  LPGFWMDIGQP+D++ G+ LYL
Sbjct: 180 PSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  313 bits (803), Expect = e-105
 Identities = 135/358 (37%), Positives = 192/358 (53%), Gaps = 24/358 (6%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL GG+GTRLRPLT   PKPL+  A KP+I + +EAL A GV E+VL + Y  E +
Sbjct: 2   MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +  + E  LG++I    E EPLGTAG L  A D L  D    F VLN DV+++   +E
Sbjct: 62  EEYFGDGE-GLGVRITYVVEKEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSE 117

Query: 121 MIEFHKAHGGEASI---MVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG--NKINAGIYL 175
           ++EFHK  G  A+I    V +PS++GVV  ++  G+V +F EKP       N INAGIY+
Sbjct: 118 LLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYI 177

Query: 176 LNPAVLDRIEL-RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDS 233
            +P V D IE       E+E+ P +A +G  ++  V  G+W+DIG P D +    L L  
Sbjct: 178 FDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237

Query: 234 L------RKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRC 287
                    +  + +   A I+G V++   A+IG G LIGP   +G G  + +GV +   
Sbjct: 238 DGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNS 297

Query: 288 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 345
            +M  V I   + I  SIIG +  +G      ++ I   DV +        GVV+   
Sbjct: 298 IIMDNVVIGHGSYIGDSIIGENCKIGA-----SLIIG--DVVIGINSEILPGVVVGPG 348

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  235 bits (602), Expect = 7e-77
 Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 11/222 (4%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTRLRPLT + PKPL+  A KP++ + IE L   G+ E++L + Y  E +  
Sbjct: 1   AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +  +K G+ I    + EPLGTAG +  A D L DD    F V+N DV+++   +E++
Sbjct: 61  YFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELL 116

Query: 123 EFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPA 179
            FH+  G +A+I    V++PS+YGVV +++  G+V +FVEKP L   N  NAGIY+  P 
Sbjct: 117 RFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPE 175

Query: 180 VLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPGFWMDIG 218
           +LD I            +  P +  EGK++   + G+W+DIG
Sbjct: 176 ILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score =  202 bits (516), Expect = 2e-63
 Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 17/248 (6%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVM 60
           KA+IL GG GTRL PLT ++ KPLV   +K PMI + +  L   G+ E ++    +   +
Sbjct: 1   KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           +       +K G+++  + + EP GTA  +ALA D L DD  E   VL  D I    F E
Sbjct: 61  VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120

Query: 121 MIEFHKAHG--GEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-NKINAGIY 174
            ++  +A    G  +     V++P+ YGV+  +E  G+V +FVEKP L    N  + GIY
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDE-NGRVIRFVEKPDLPKASNYASMGIY 179

Query: 175 LLNPAVLDRI-----EL-RPTSIEKEVFPKIALEGKLF-AMVLPGF--WMDIGQPRDYIT 225
             N  V   +     EL R      +  P    +G L  A +  G+  W D+G       
Sbjct: 180 FFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWE 239

Query: 226 GLRLYLDS 233
                L  
Sbjct: 240 ANLKLLTG 247

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  196 bits (501), Expect = 1e-59
 Identities = 107/333 (32%), Positives = 162/333 (48%), Gaps = 37/333 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL  G GTR+RPLT + PKP++  A KP++ H IEAL+  G+ + V  + Y  E +
Sbjct: 1   MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             +  +  ++ G+ I    + E LGTA  L  A++  +DD    F VLN DV+ +    E
Sbjct: 61  REYFGD-GSRGGVPIEYVVQEEQLGTADALGSAKE-YVDD---EFLVLNGDVLLDSDLLE 115

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
                       +I    VD+PS YGVV  +   G+V   VEKP+    N INAGIYL +
Sbjct: 116 ----RLIRAEAPAIAVVEVDDPSDYGVVETDG--GRVTGIVEKPENPPSNLINAGIYLFS 169

Query: 178 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLD 232
           P + + +E    S   E         +  EGK+ A+ L GFW+D+G+P D +      LD
Sbjct: 170 PEIFELLEKTKLSPRGEYELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLD 229

Query: 233 SLRKKSSLKLATGANIVGNVLVHESAQ------------IGEGCLIGPD------VAVGP 274
           +L  +    +     I G V++ E A             IG+ C IGP+        +G 
Sbjct: 230 NLEPRIEGTVEENVTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGN 289

Query: 275 GCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 307
              + + V +    +M G +I   + +  S+IG
Sbjct: 290 NVHIGNAVEIKNSIIMEGTKIPHLSYVGDSVIG 322

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score =  191 bits (488), Expect = 3e-59
 Identities = 98/257 (38%), Positives = 135/257 (52%), Gaps = 29/257 (11%)

Query: 3   ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEV 59
           A+ILVGG   GTR RPL+L VPKPL   A KPMI H IEA   V  + EV+L   Y   V
Sbjct: 1   AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60

Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 119
             +F+ + + +  + I   QE +PLGTAG L   RD+++      FFVLN+DV  ++P  
Sbjct: 61  FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120

Query: 120 EMIEFHKAHGGEASIMVDEPSK-----YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
           E++EFHK HG   +I+  E S+     YG +V + STG+V  +VEKP+ FV + IN G+Y
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180

Query: 175 LLNPAVLDRIEL---------------------RPTSIEKEVFPKIALEGKLFAMVLPGF 213
           L +P + D I+                          +E++V   +A  GKL+      F
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240

Query: 214 WMDIGQPRDYITGLRLY 230
           W  I      I   RLY
Sbjct: 241 WSQIKTAGSAIYANRLY 257

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score =  173 bits (442), Expect = 7e-53
 Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 27/232 (11%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +I+ GG GTRLRPLT + PKP+++   KP++   I+   A G     +++NY  E++ +
Sbjct: 1   VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +  +K G+ I   +E +PLGTAG L+L  +K      +PF V+N D+++   +  ++
Sbjct: 61  YFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLL 115

Query: 123 EFHKAHGGEASIMVDE-----PSKYGVVVMEESTGKVEKFVEKPKL-FVGNKINAGIYLL 176
           +FHK +  +A++ V E     P  YGVV  E   G++    EKP   F    +NAGIY+L
Sbjct: 116 DFHKENNADATVCVREYEVQVP--YGVVETEG--GRITSIEEKPTHSF---LVNAGIYVL 168

Query: 177 NPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 223
            P VLD I        P  IEK     I    K+    +  +W+DIG+P DY
Sbjct: 169 EPEVLDLIPKNEFFDMPDLIEKL----IKEGKKVGVFPIHEYWLDIGRPEDY 216

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score =  171 bits (435), Expect = 8e-52
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL GG GTRLR +   +PKPL   A +P + + +E L   G++ +VL++ Y  E +  
Sbjct: 1   AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
           +  +   + GI+I    E EPLGT G +  A  KL +D    F VLN D   +     ++
Sbjct: 61  YFGD-GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALL 116

Query: 123 EFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPA 179
              +A G +A++    V + S+YG V ++   G+V  FVEK        IN G+YLL   
Sbjct: 117 AALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKE 175

Query: 180 VLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 223
           +L  I     S+E +V P +   G+L+   + G+++DIG P DY
Sbjct: 176 ILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDY 219

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score =  165 bits (419), Expect = 2e-49
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 16/228 (7%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL  G GTR+RPLT + PKPLV  A KP+I H ++ L A G+  +V+  ++  + + 
Sbjct: 1   KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60

Query: 62  NFLKEFEAKLGIKIICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             L   +++ G++I  S E  E L T G +  A   L D   EPF V+N D++ +   A 
Sbjct: 61  AHLG--DSRFGLRITISDEPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAP 115

Query: 121 MIEFH--KAHGGEASI-MVDEPSK--YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 175
           ++  H  +       + +V  P     G   ++   G++ +        V      GI +
Sbjct: 116 LLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDA-DGRLRRGGGG---AVAPFTFTGIQI 171

Query: 176 LNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 223
           L+P +   I     S+   ++ +    G+LF +V  G W D+G P   
Sbjct: 172 LSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score =  153 bits (390), Expect = 5e-45
 Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 15/242 (6%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK LIL GG GTRLRPLT + PK L+  A KP+I + IE L+  G+ ++ + +    E +
Sbjct: 1   MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L +  ++ G++I    + EPLG A  +  ARD L D+   PF V   D + +   + 
Sbjct: 61  KEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISP 116

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++        +ASI+   V++P ++GV V+++  G++ + VEKPK    N    G+Y   
Sbjct: 117 LVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFT 174

Query: 178 PAVLDRI-ELRPTSI-EKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITGLRLYL 231
           PA+ D I  L+P+   E E+   I        ++   ++ G+W D G P D +   RL L
Sbjct: 175 PAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234

Query: 232 DS 233
           D 
Sbjct: 235 DK 236

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score =  146 bits (370), Expect = 8e-41
 Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 20/340 (5%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVM 60
           KALIL  G GTRLRPLT + PK L+  ANKP++ + IE L   G+T++ + +     E +
Sbjct: 1   KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              + E E + G KI    + EPLG A  +  ARD L DD    F V   D + +   + 
Sbjct: 61  KEIVGEGE-RFGAKITYIVQGEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISR 116

Query: 121 MIE-FHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 176
            ++ F +    +A I+   V +P+ +GV V+E+   ++ K VEKPK    N    G+Y+ 
Sbjct: 117 FVKSFEEKD-YDALILLTKVRDPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMF 174

Query: 177 NPAVLDRIELRPTSIEKEVFPKIALEG------KLFAMVLPGFWMDIGQPRDYITGLRLY 230
            P + + I+    S   E+    A++       K+    + G+W D G+P D +   RL 
Sbjct: 175 RPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLI 234

Query: 231 LDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVM 290
           LD + ++    +   + I G V+V E A+I    + GP   +G  C++E+       ++ 
Sbjct: 235 LDEV-EREVQGVDDESKIRGRVVVGEGAKIVNSVIRGP-AVIGEDCIIENSYIGPYTSIG 292

Query: 291 RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
            GV I+      S ++      G  AR+ + +++G+ V +
Sbjct: 293 EGVVIRDAEVEHSIVLDESVIEGVQARIVD-SVIGKKVRI 331

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score =  136 bits (346), Expect = 7e-38
 Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 26/282 (9%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRLRPLT  VPK L+   +KPMI + +E L   G+ ++++ +  + +  
Sbjct: 1   MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    +  G+ I  + + EP G A  + +A D  + D  + F +   D I +   +E
Sbjct: 61  FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED-FVGD--DDFVLYLGDNIFQDGLSE 117

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++E     G  A+I+   VD+PS+YGVV  +E  GKV    EKPK    N    G+Y  +
Sbjct: 118 LLEHFAEEGSGATILLYEVDDPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYD 176

Query: 178 PAVLDRIELRPTSIEKEVFPKIALE-----------GKL-FAMVLPGFWMDIGQPRDYIT 225
           P+V + I+    S   E      LE           G L  A+++ G+W+D G P   + 
Sbjct: 177 PSVFEAIKQIKPSARGE------LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLE 230

Query: 226 GLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIG 267
               ++ ++ K+   K+A    I  N  +     IG    + 
Sbjct: 231 ANN-FVRTVSKRQGFKIACPEEIAWNGWIDGPGLIGLASQLE 271

Length = 286

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score =  126 bits (319), Expect = 2e-34
 Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 34/255 (13%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +IL GG GTRL   T   PKP+VE   +P++ H ++     G  + +L + Y+  V+  
Sbjct: 1   VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKE 60

Query: 63  FLKEFEAKL---------GIKIICSQETEP-------LG----TAGPLALARDKLIDDTG 102
           +   +                 + + + E         G    T G L   R  L DD  
Sbjct: 61  YFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDD-- 118

Query: 103 EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIM-VDEPSKYGVVVMEESTGKVEKFVEKP 161
           E F +   D +S+     +IEFH++HG  A++  V  P ++G + +++  G+V  F EKP
Sbjct: 119 ETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGRFGELDLDDD-GQVTSFTEKP 177

Query: 162 KLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW--MDIGQ 219
           +   G  IN G ++L P V D I+   T  E+E   ++A +G+L A    GFW  MD   
Sbjct: 178 QG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMD--T 234

Query: 220 PRDYITGLRLYLDSL 234
            RD        L+ L
Sbjct: 235 LRDK-----QTLEEL 244

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score =  106 bits (267), Expect = 5e-29
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query: 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 312
           L+  SA+IG+   IGP+V +GP   +  GVRL RC ++    ++ H+ + SSI+GW+STV
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 313 GQWARVENMTILGEDVHVCD 332
           G+W R+EN+T+LG+DV + D
Sbjct: 61  GRWTRLENVTVLGDDVTIKD 80

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score =  109 bits (275), Expect = 5e-28
 Identities = 76/253 (30%), Positives = 119/253 (47%), Gaps = 37/253 (14%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL GG GTR+   T   PKP+VE   KP++ H ++     G+ + ++   Y+  V  
Sbjct: 1   KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYV-- 58

Query: 62  NFLKEFEAKLGIKI-------------ICSQETEPLG-----------TAGPLALARDKL 97
             +KE+ A   + +             +  +  EP             T G L   R+ L
Sbjct: 59  --IKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYL 116

Query: 98  IDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIM-VDEPSKYGVVVMEESTGKVEK 156
            D   E F     D +++     +I FH+ HG +A++  V  P ++G + +E    +V  
Sbjct: 117 DD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPGRFGALDLEG--EQVTS 171

Query: 157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW-- 214
           F EKP L  G  IN G ++LNP+VLD I+   T  E+E    +A  G+L A    GFW  
Sbjct: 172 FQEKP-LGDGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQP 230

Query: 215 MDIGQPRDYITGL 227
           MD  + ++Y+  L
Sbjct: 231 MDTLRDKNYLEEL 243

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score =  108 bits (271), Expect = 9e-28
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 24/235 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G G+RLRPLT   PK L+E   KP++  QIE LK  G+ ++V+   Y+ E +  
Sbjct: 1   AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
            LK++     IK + + +         L LARD L     E F +L  DV+ +     ++
Sbjct: 61  LLKKY---PNIKFVYNPDYAETNNIYSLYLARDFL----DEDFLLLEGDVVFDP---SIL 110

Query: 123 EFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK-PKLFVGNKINA---GIYLLNP 178
           E   +   + +I+VD+ +K       +        +    K     +I     GI   +P
Sbjct: 111 ERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKNLEEIQGEYVGISKFSP 170

Query: 179 AVLDRI-----ELRPTSIEK----EVFPKIALEGKLFAMVLP-GFWMDIGQPRDY 223
              DR+     EL           +   ++  E  +    +  GFW +I    D 
Sbjct: 171 EDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDL 225

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score =  112 bits (283), Expect = 1e-27
 Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 49/362 (13%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR++     +PK L   A KPM+ H I+A +A+G  ++V+ + +  E +
Sbjct: 3   LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L E +      +    + E LGT   +  A   L DD      VL  DV  I+    
Sbjct: 60  REALAERD-----DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETL 114

Query: 119 AEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINA 171
            E++  H AHG  A+++    D+P+ YG +V + + G+V   VE+     +     +IN 
Sbjct: 115 EELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQIKEINT 173

Query: 172 GIYLLNPAVLDR--IELRPTSIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDY-- 223
           GIY  + A L R   +L   + + E +      IA         +           D   
Sbjct: 174 GIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAV--------HVDDEEE 225

Query: 224 ITGL--RLYLDSL-----RKKSSLKLATGANIV--GNVLVHESAQIGEGCLIGPDV---- 270
           + G+  R+ L        R+ +   +  G  ++      +    +IG   +I P+V    
Sbjct: 226 VLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEG 285

Query: 271 --AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 328
              +G   V+  G  +    +     IK ++ I  S +G  +TVG +AR+    +LG DV
Sbjct: 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADV 345

Query: 329 HV 330
           H+
Sbjct: 346 HI 347

Length = 460

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  104 bits (261), Expect = 9e-25
 Identities = 91/364 (25%), Positives = 151/364 (41%), Gaps = 58/364 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  +IL  G GTR++     +PK L   A KPM+ H I+A +A+G  ++ +   +  E +
Sbjct: 1   LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L          +    + E LGT   +  A   L DD      VL  DV  IS    
Sbjct: 58  RKALAN------RDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETL 109

Query: 119 AEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGI 173
             ++E H+ +G    +  + +P+ YG ++ E   GKV   VE      +     +IN G+
Sbjct: 110 ERLLEAHRQNGITLLTAKLPDPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINTGV 168

Query: 174 YLLNPAVLDRI--ELRPTSIEKEVFPK--IALEGKLFAMVLPGFWMDIGQPRDY--ITGL 227
           Y+ + A L R   +L   + + E +    IAL       V  G  +   Q  D   + G+
Sbjct: 169 YVFDGAALKRWLPKLSNNNAQGEYYLTDVIAL------AVADGETVRAVQVDDSDEVLGV 222

Query: 228 ----------RLYLDSLRKK-----------SSLKLATGANIVGNVLVHESAQIGEGCLI 266
                     R+    + KK           +   +     I  +V +  +  +     I
Sbjct: 223 NDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKI 282

Query: 267 GPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 326
           G DV +GPGCV+++        +   V IK ++ +  S IG    VG +AR+   ++LG 
Sbjct: 283 GDDVVIGPGCVIKN------SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGA 336

Query: 327 DVHV 330
            VH+
Sbjct: 337 GVHI 340

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 94/394 (23%), Positives = 166/394 (42%), Gaps = 58/394 (14%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVML 61
           A+IL GG G+RL PLT    KP V F  K  +I   +      G+  + +   Y+   + 
Sbjct: 8   AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLN 67

Query: 62  NFL---KEF---EAKLGIKIICSQETEPL-----GTAGPLALARD-KLIDDTGEPFFV-L 108
           + +     +       G+ I+ +Q+ E       GTA   A+ ++  +I  +   + + L
Sbjct: 68  DHIGRGWPWDLDRKNGGVFILPAQQREGGERWYEGTA--DAIYQNLLIIRRSDPEYVLIL 125

Query: 109 NSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKPKL 163
           + D I +  +++M++FH   G + ++ V     +E S++GV+ ++E+ G++ +FVEKP  
Sbjct: 126 SGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEKPAD 184

Query: 164 --FVGNKINAGIYLLNPAVLDRIEL------RPTS---IEKEVFPKIALEGKLFAMVLPG 212
                +  + GIY+ N  +L   EL       P S     K++ PK+   GK++A    G
Sbjct: 185 GPPSNSLASMGIYIFNTDLL--KELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSG 242

Query: 213 FWMDIGQPRDYIT----------GLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGE 262
           +W D+G    Y             L LY  +    +  K    A  V +  V  S  +  
Sbjct: 243 YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNS-LVAG 301

Query: 263 GCLIGPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 319
           GC+I   V    +  G  +  G  +    +M  V I + A +  +II  +        + 
Sbjct: 302 GCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN------VVIG 355

Query: 320 NMTILGEDVHVCDE---IYSNGGVVLPHKEIKSS 350
              ++G D    D        G VV+P   +   
Sbjct: 356 EGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKL 389

Length = 393

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 96.8 bits (242), Expect = 4e-23
 Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 42/262 (16%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+I   G GTR  P T ++PK ++   +KP+I + +E   A G+ ++++        +
Sbjct: 1   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60

Query: 61  LNFL---KEFEAKL-----------------GIKIICSQETEPLGTAGPLALARDKLIDD 100
            +      E E  L                    I   ++ EPLG    +  A+   I D
Sbjct: 61  EDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP-FIGD 119

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTG 152
             EPF VL  D +  S+ P   ++IE ++  G  + I V     ++ SKYG+V  E+  G
Sbjct: 120 --EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYGIVKGEKIDG 176

Query: 153 ---KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE 202
              KV+  VEKPK      N    G Y+L P + D +E        E+       K+  E
Sbjct: 177 DVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE 236

Query: 203 GKLFAMVLPGFWMDIGQPRDYI 224
             ++A V  G   D G    Y+
Sbjct: 237 EPVYAYVFEGKRYDCGNKLGYL 258

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 47/222 (21%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEV 59
            +A++L  GFG+R  PLT  +PK L+  AN P+I + +E L+  GV EV V+   +   +
Sbjct: 1   FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60

Query: 60  MLNFLKEFEAKLGIK----IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE 115
           + + LK   + L  K    +I S   E  G A  L   R  +  D    F +L+ D++S 
Sbjct: 61  IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSD----FLLLSCDLVSN 116

Query: 116 YPFAEMIE----FHKAHGGEASIMV--------DEPSKYG----VVVMEESTGKV----- 154
            P +E++E      K     A++ V         E SK      V+ ++  T ++     
Sbjct: 117 IPLSELLEERRKKDKNA--IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHY 174

Query: 155 EKFVEKPKLFVGNK---------------INAGIYLLNPAVL 181
           E+ +++    +  K               ++  IY+ +P VL
Sbjct: 175 EEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 30/195 (15%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L   A KPM+ H ++A +A+G   +V+ + +  E    
Sbjct: 1   AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQ--- 54

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            +K+  A   ++ +  QE E LGT   +  A   L D  G+   VL  DV  I+      
Sbjct: 55  -VKKALANPNVEFV-LQE-EQLGTGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQR 110

Query: 121 MIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE---------KPKLFVGNK 168
           ++E H+  G + +++    ++P+ YG ++ + + GKV + VE           +      
Sbjct: 111 LLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIRE----- 164

Query: 169 INAGIYLLNPAVLDR 183
           +NAGIY  +   L  
Sbjct: 165 VNAGIYAFDAEFLFE 179

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 87.8 bits (218), Expect = 4e-20
 Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 27/240 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
           MKA+IL  GFG+RL P    +PK LVE   + +I   IE L   G+TE VV+   Y+ ++
Sbjct: 4   MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60

Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 119
           +  FLK++      KI+ + + E   T   L LA+D +       F ++ SD + E    
Sbjct: 61  VEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSIL 114

Query: 120 EMIEFHKAHGGEASIMVDEPSKYGV---VVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 176
           E +   +A  GE  I+   P   GV     +++  G++ +  +    + G  I  GI++L
Sbjct: 115 ERL--LEA-PGEGLIVDRRPRYVGVEEATKVKDEGGRIVEIGKDLTEYDGEDI--GIFIL 169

Query: 177 NPAVLDRIELRPTSIEKEVFPKIALE-------GKLFAMVLPGFWMDIGQPRDYITGLRL 229
           + ++ +  +     +E+  +    +E        ++   V   FWM++  P D     + 
Sbjct: 170 SDSIFE--DTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKY 227

Length = 239

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 90.7 bits (226), Expect = 5e-20
 Identities = 94/383 (24%), Positives = 168/383 (43%), Gaps = 64/383 (16%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L +   KPM+ H ++++K  G+ ++V  + +  E    
Sbjct: 5   AIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE---- 57

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
              E +  LG +   + + E LGT   +  A + L D  G    V+  D   I+      
Sbjct: 58  ---EVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKN 113

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGI 173
           +I+FH+ H   A+I+    + P+ YG ++  E+ G+VEK VE      +     +IN G 
Sbjct: 114 LIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGT 172

Query: 174 YLLNPAVLDRI--ELRPTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYIT 225
           Y  +   L     ++   + + E +    +E       K+ A     F        +   
Sbjct: 173 YCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDF--------EESL 224

Query: 226 GL--RLYL----DSLRKKSSLK-LATGANIVG--NVLVHESAQIGE------GCLIGPDV 270
           G+  R+ L      +R++ + K +  G  I+   +  +    +IG       G +I  + 
Sbjct: 225 GVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNT 284

Query: 271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
            +G  CV+  G R+   T+  GV I  ++ I  S +G + TVG +A +   +++GE+V +
Sbjct: 285 VIGEDCVIGPGSRIVDSTIGDGVTI-TNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKI 343

Query: 331 CDEIYSNGGVVLPHKEIKSSILK 353
                  G  V    EIK S + 
Sbjct: 344 -------GNFV----EIKKSTIG 355

Length = 458

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 87.2 bits (217), Expect = 5e-20
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 27/241 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL PLT  V K L+   +KPMI + +  L   G+ E+++     PE +
Sbjct: 1   MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIIST--PEDL 58

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-YP 117
             F +     + LGI+I  + + +P G A    +  + + DD   P  ++  D I     
Sbjct: 59  PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQG 115

Query: 118 FAEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
            + +++   A    A++    V++P +YGVV  +E+ G+V    EKPK    N    G+Y
Sbjct: 116 LSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLY 174

Query: 175 LLNPAVLDRI---------ELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDY 223
             +  V +           EL  T +  E   K    GKL   +L     W+D G     
Sbjct: 175 FYDNDVFEIAKQLKPSARGELEITDVNNEYLEK----GKLSVELLGRGFAWLDTGTHESL 230

Query: 224 I 224
           +
Sbjct: 231 L 231

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 85/373 (22%), Positives = 155/373 (41%), Gaps = 67/373 (17%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
           A++L GG G+RL PLT    KP V F  K  I+     + I +    G+  + +   Y+ 
Sbjct: 1   AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS----GIRRIGVLTQYKS 56

Query: 58  EV----------MLNFLKEFEAKLGIKIICSQETEP-----LGTAGPLALARD-KLIDDT 101
                          F+  F     + ++ +Q+ E       GTA   A+ ++  LI+D 
Sbjct: 57  HSLNRHIQRGWDFDGFIDGF-----VTLLPAQQRESGTDWYQGTAD--AVYQNLDLIEDY 109

Query: 102 G-EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVE 155
             E   +L+ D I +  + +M+++H   G + +I        E S++GV+ ++E  G++ 
Sbjct: 110 DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIV 168

Query: 156 KFVEKPKLFVGNKINA-------GIYLLNPAVL-----DRIELRPTSIE--KEVFPKIAL 201
            F EKP                 GIY+ +  VL     +  +   +S +  K++ P+   
Sbjct: 169 DFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALE 228

Query: 202 EGKLFAMVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGANIVGN 251
           EG + A +  G+W D+G    +          +    LY       +  +    A  V +
Sbjct: 229 EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDS 288

Query: 252 VLVHESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 307
                 + + EGC+I G  V+   +G    + SG  +    +M  V I + A I ++II 
Sbjct: 289 DAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIID 348

Query: 308 WHSTVGQWARVEN 320
            +  +G+   + N
Sbjct: 349 KNVRIGEGVVIGN 361

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 9/132 (6%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE--VVLAINYQPE 58
            +A+IL GG G+RL PLT ++PK L+  ANKPMI + ++ L+  G  +  VV+    Q E
Sbjct: 1   FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60

Query: 59  VMLNFLKEF--EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY 116
           +   +L+ F    K  +  +     E +GTA  L   R K+  D    F VL+ D+I++ 
Sbjct: 61  IST-YLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD----FLVLSCDLITDL 115

Query: 117 PFAEMIEFHKAH 128
           P  E+++ H++H
Sbjct: 116 PLIELVDLHRSH 127

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 46/358 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     + K +   A +PM+   + A +  G   +VL + +Q E +  
Sbjct: 6   AIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKV-- 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
             + F     +    + + E LGT   +A A   L   +G    +L  DV  +       
Sbjct: 61  -REHFAGDGDVS--FALQEEQLGTGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQG 116

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGI 173
           M+  H+A G   +++   ++ P  YG +V  ++ G+V + VE+    P+     ++N+GI
Sbjct: 117 MLAAHRATGAAVTVLTARLENPFGYGRIV-RDADGRVLRIVEEKDATPEERSIREVNSGI 175

Query: 174 YLLNPAVL-DRI-ELRPTSIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDYITGL 227
           Y +  A L D I  L   + + E +      +A    L  +  P     +  P + I G+
Sbjct: 176 YCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFP-----VADPDE-IMGV 229

Query: 228 --RLYLDS----LRKKSSLKLA-TGANIV--GNVLVHESAQIGEGCLIGPDVA------V 272
             R  L      LR++ + +L   G  ++      +     IG    I P V       +
Sbjct: 230 NDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRI 289

Query: 273 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           G GC +E GV +  C +   V +K  + +  S++G    +G  A +   T L   V +
Sbjct: 290 GEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347

Length = 459

>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

 Score = 78.3 bits (193), Expect = 8e-17
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M A+IL  G G+R  PLT S PK L++   +P+I  QIE L+  G+ ++ + + Y  E  
Sbjct: 1   MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-Q 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112
             +LK+   K  + ++ + +         L LARD L +      ++++SD 
Sbjct: 60  FEYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLNNT-----YIIDSDN 103

Length = 231

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 312
           L+ ES  IGE  +I   V +G    +  GV ++   +M  V I  ++ I  SIIG ++ +
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 313 GQWARVENMTILGEDVHV 330
           G+  RV N+ I+G+DV V
Sbjct: 60  GENVRVVNLCIIGDDVVV 77

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 42/263 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVL-------AI 53
            KA+I   G GTR  P T ++PK ++   +KP+I + +E     G+ ++++       +I
Sbjct: 1   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60

Query: 54  ------NYQPEVML------NFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDD 100
                 +Y+ E  L        LKE  + +    I   ++ E  G    +  A    + D
Sbjct: 61  EDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFYVRQKEQKGLGHAVLCAE-PFVGD 119

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVV---VMEE 149
             EPF V+  D I  SE P   +MI+ ++ +G    I V     +E SKYGV+    +EE
Sbjct: 120 --EPFAVILGDDICVSEEPVLKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEE 176

Query: 150 STGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE 202
              +++  VEKPK      N    G Y+L P + + +E  P     E+       K+  +
Sbjct: 177 GVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLEETPPGKGGEIQLTDALRKLLKK 236

Query: 203 GKLFAMVLPGFWMDIGQPRDYIT 225
            +++A    G   D G    YI 
Sbjct: 237 ERVYAYKFKGKRYDCGSKLGYIK 259

Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 77/272 (28%), Positives = 116/272 (42%), Gaps = 61/272 (22%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVL-------AI 53
            KA+I   G GTR  P T ++PK ++   +KP+I + +E   A G+ E+++       AI
Sbjct: 5   RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAI 64

Query: 54  ------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDD 100
                 +Y+ E  L        L+E  +    + I   ++ EPLG    +  A+   + D
Sbjct: 65  EDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKP-FVGD 123

Query: 101 TGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVV----VME 148
             EPF VL  D +  SE P   +MIE ++  GG   I V     ++ SKYGV+     +E
Sbjct: 124 --EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVE 180

Query: 149 ESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRP--------------TSIE 192
           +   KV+  VEKPK      N    G Y+L P + D +E                   ++
Sbjct: 181 KGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK 240

Query: 193 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYI 224
           KE       EGK +         D G    YI
Sbjct: 241 KEPVLAYVFEGKRY---------DCGSKLGYI 263

Length = 291

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 93/360 (25%), Positives = 159/360 (44%), Gaps = 57/360 (15%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M+AL+L  G GTR++     +PK L + + KPMI   I+  K V   +V + + ++ E++
Sbjct: 1   MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELV 56

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L E      +KI    + E LGTA  +  ARD +  + G+   +L  DV  ISE   
Sbjct: 57  KKLLPE-----WVKIF--LQEEQLGTAHAVMCARDFI--EPGDDLLILYGDVPLISENTL 107

Query: 119 AEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVEK---PKLFVGNKINAG 172
             +IE H   G + +I+V   ++P+ YG ++ +   GK     +K    +     +IN G
Sbjct: 108 KRLIEEHNRKGADVTILVADLEDPTGYGRIIRDG--GKYRIVEDKDAPEEEKKIKEINTG 165

Query: 173 IYLLNPAVLDRIELRPTSIEKEVFPKIA---LEGKLFAMVLPGFWMDIGQPR----DYIT 225
           IY+ +   L            EV PKI     +G+ +      F   +   +      IT
Sbjct: 166 IYVFSGDFL-----------LEVLPKIKNENAKGEYYLTDAVNFAEKVRVVKTEDLLEIT 214

Query: 226 GL--RLYLDSLRKKSSLK-----LATGANIV--GNVLVHESAQIGEGCLIGP------DV 270
           G+  R+ L  L K+  ++     +  G  I+      +H   +IG   +I P        
Sbjct: 215 GVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKT 274

Query: 271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
            +G  C +    R+  C +   V+I +  C   S+I    +VG ++R+   T+L + V +
Sbjct: 275 RIGEDCEIGPMTRIVDCEIGNNVKIIRSEC-EKSVIEDDVSVGPFSRLREGTVLKKSVKI 333

Length = 448

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 63/282 (22%)

Query: 107 VLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKP 161
           +L+ D I +  + +M+++HK    + +I V     +E S++G++  +E   ++ +F EKP
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDE-NMRIVEFEEKP 180

Query: 162 KLFVGNKINAGIYLLN----PAVLDRIELRPTSIE---KEVFPKIALEG-KLFAMVLPGF 213
           K    N  + GIY+ N       L   E  P S     K V P    EG KL+A    G+
Sbjct: 181 KNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGY 240

Query: 214 WMDIGQPRDYITGLRLYLDSLRKKSSLKL-------------------ATGANIVGNVLV 254
           W D+G            ++ LR ++ L L                   A  A +  N LV
Sbjct: 241 WKDVGTIESL---WEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLV 296

Query: 255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQ 314
            E                  GCVV   V  S   + +GV++ + + +  S+I   + +G+
Sbjct: 297 VE------------------GCVVYGTVEHS--VLFQGVQVGEGSVVKDSVIMPGAKIGE 336

Query: 315 WARVENMTILGEDVHVCDEIYSNGG-----VVLPHKEIKSSI 351
              +E   I+GE+  + D +   GG     V+  ++ I    
Sbjct: 337 NVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGT 377

Length = 380

>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEVM- 60
           A++L   F  R RPLT   P+ L+  AN P+I + +E L   GV EV V   ++  ++  
Sbjct: 3   AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKE 62

Query: 61  -LNFLKEFEAKLG---IKIICSQETEPLGTAGPLALARDKLIDDTG---EPFFVLNSDVI 113
            +   K  + K     + II S++   LG A      RD  +D  G     F +++ DV+
Sbjct: 63  YIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA-----LRD--LDAKGLIRGDFILVSGDVV 115

Query: 114 SEYPFAEMIEFHK 126
           S     E++E HK
Sbjct: 116 SNIDLKEILEEHK 128

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 83/356 (23%), Positives = 137/356 (38%), Gaps = 43/356 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           ALIL  G GTR+       PK L     +PM+     AL+ +    V   + ++ +++  
Sbjct: 8   ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRA 64

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 120
              + +A+        QE + LGT   L  A   L     +   V+N D  +++     +
Sbjct: 65  AFPDEDAR-----FVLQE-QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDD 118

Query: 121 MI-EFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVE----KPKLF--VGNKINAGI 173
            + E   A     ++ + +P  YG VV     G V   VE       L      ++NAGI
Sbjct: 119 FLKEAAGADLAFMTLTLPDPGAYGRVVRRN--GHVAAIVEAKDYDEALHGPETGEVNAGI 176

Query: 174 YLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL 229
           Y L        L R+     S E  +   + L       VL    ++ G+  + + G+  
Sbjct: 177 YYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLG---VNCGEDPNLL-GVNT 232

Query: 230 YLDSLRKKSSLKLATGAN-IVGNVLVH--ESAQIGEGCLIGPDVAV-GP----------- 274
             + +R +  L+       +   VL+H  ES +IG    I P   + GP           
Sbjct: 233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIAR 292

Query: 275 GCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           G V+ S   L    V  G  I   + +  + +G   +VG +AR+    +L E   V
Sbjct: 293 GAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARV 348

Length = 456

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 40/356 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  +IL  G GTR++    ++PK L   A +PM+   ++A + +G  ++V+   +  E  
Sbjct: 8   LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAE-- 62

Query: 61  LNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYP 117
                + EA L G  +  +++ + LGT          L  +      VL  D  ++    
Sbjct: 63  -----QVEAALQGSGVAFARQEQQLGTGDAFLSGASAL-TEGDADILVLYGDTPLLRPDT 116

Query: 118 FAEMIEFHKAHGGEASIMVDE---PSKYGVVVMEESTGKVEKFVEKPKLFVGNK----IN 170
              ++  H+A G   +I+  E    + YG +V     G VE+ VE+       K     N
Sbjct: 117 LRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFN 175

Query: 171 AGIYLLN---PAVLDRI-------ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP 220
           +G+Y+ +   P +  RI       E   T +   ++     + + F +  P   +     
Sbjct: 176 SGVYVFDARAPELARRIGNDNKAGEYYLTDL-LGLYRAGGAQVRAFKLSDPDEVLG-AND 233

Query: 221 RDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVES 280
           R  +  L   L     ++ +K        G +L+ ++  +G    I P V +     V  
Sbjct: 234 RAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVAD 293

Query: 281 GVRLSRCTVM------RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           GV +   +V+       G  IK H+ +  + +G  S VG +AR+   T+LGE VH+
Sbjct: 294 GVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHI 349

Length = 481

>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional

 Score = 63.9 bits (155), Expect = 1e-11
 Identities = 62/252 (24%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64

Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122

Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAISLEEKPLQPKSNYAVTGLYFYDN 181

Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYITGLRLYL 231
            V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I     ++
Sbjct: 182 DVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN-FI 240

Query: 232 DSLRKKSSLKLA 243
            ++ ++  LK++
Sbjct: 241 ATIEERQGLKVS 252

Length = 292

>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 41/199 (20%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+I V G G  + P T ++PK ++   +KPMI + ++ + A G+ E+VL  +     +
Sbjct: 4   LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63

Query: 61  LNFLK---EFEAKL------------------GIKIICSQETEPLGTAGPLALARDKLID 99
            N      E E+ L                  G+ I+  ++ +PLG    +  AR  + D
Sbjct: 64  ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123

Query: 100 DTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE---ASIMVDEPSKYGVVVME 148
               PF V+  DV+ +        Y  A MI      G     A  M  + S+Y V+  +
Sbjct: 124 ---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180

Query: 149 E---STGKVEK---FVEKP 161
           E     GKV +   F+EKP
Sbjct: 181 EPLDREGKVSRIVEFIEKP 199

Length = 297

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 260 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 319
           I  G ++     +G  CV+     +   T+  GV IK  + I  ++IG  +TVG +A + 
Sbjct: 24  IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLR 83

Query: 320 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIL 352
             T+LGE VH+       G  V    EIK S +
Sbjct: 84  PGTVLGEGVHI-------GNFV----EIKKSTI 105

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 312
           LV E+ Q+GE   I   V +G  C +   V+++ C +M  V I+    + + IIG  + +
Sbjct: 1   LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVI 59

Query: 313 GQWARVEN 320
           G+  ++++
Sbjct: 60  GEKCKLKD 67

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 61/282 (21%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLA-------- 52
           +KA+I V G G  + P T ++PK ++   +KPMI + ++ + A G+ E+VL         
Sbjct: 4   LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63

Query: 53  -----INYQPEVML------NFLKEFEA--KLGIKIICSQETEPLGTAGPLALARDKLID 99
                 +Y+ E +L        L E ++    G+ I+  ++ +PLG    +  AR  + D
Sbjct: 64  ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123

Query: 100 DTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE---ASIMVDEPSKYGVVVME 148
           +   PF V+  D+I +        Y  A MI      G     A  M  + S+Y V+  +
Sbjct: 124 N---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180

Query: 149 E---STGKVEKFVE------KPKLFVGNKINAGIYLLN-----------PAVLDRIELRP 188
           E     GKV + VE      +P+    + +  G Y+L+           P    RI+L  
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQL-- 238

Query: 189 TSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 230
                +   ++A +  + AM++ G   D G+   Y+     Y
Sbjct: 239 ----TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297

>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 34/194 (17%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLN 62
           +IL  G GTR++    S+PK L     KPM+ + + EA        VVL  ++Q E +  
Sbjct: 6   IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVL--HHQKERIKE 60

Query: 63  FLKE-FEAKLGIKIICSQETEPL-GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
            + E F    G+    +Q+ E   GT G L       I+   E   +LN D+    P  E
Sbjct: 61  AVLEYFP---GVIFH-TQDLENYPGTGGAL-----MGIEPKHERVLILNGDM----PLVE 107

Query: 121 MIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVE-----KPKLFVGNKIN 170
             E  K    +A I++      +P  YG VV+E   G+V+K VE     + +L +   +N
Sbjct: 108 KDELEKLLENDADIVMSVFHLADPKGYGRVVIEN--GQVKKIVEQKDANEEELKI-KSVN 164

Query: 171 AGIYLLNPAVLDRI 184
           AG+YL +  +L+  
Sbjct: 165 AGVYLFDRKLLEEY 178

Length = 430

>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 63/256 (24%), Positives = 115/256 (44%), Gaps = 22/256 (8%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 1   KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60

Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +  + +  P G A    +  D +  D      VL  ++   +  +++
Sbjct: 61  QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSA--LVLGDNIFYGHDLSDL 118

Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           ++   A    A++    V +P +YGVV  + + G+     EKP     N    G+Y  + 
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAISIEEKPAQPKSNYAVTGLYFYDN 177

Query: 179 AVLD---------RIELRPTSIEKEVFPKIALEGKLFAMVLP-GF-WMDIGQPRDYITGL 227
            V++         R EL  T + +        EG+L   +L  G+ W+D G   D +   
Sbjct: 178 RVVEIARQLKPSARGELEITDLNRVYLE----EGRLSVELLGRGYAWLDTGT-HDSLLEA 232

Query: 228 RLYLDSLRKKSSLKLA 243
             ++ ++ K+  LK+A
Sbjct: 233 SNFIQTIEKRQGLKVA 248

Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++    S+PK L   A +PM+ H + A  ++G + V + +    E +  
Sbjct: 8   AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
              +         I  Q+ E LGTA  +  AR+ L    G+   VL  D   I+    A 
Sbjct: 65  AAAKIAPDA---EIFVQK-ERLGTAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLAR 119

Query: 121 MIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVE 159
           + E        A ++V      +P+ YG ++++   G++   VE
Sbjct: 120 LRE---RLADGADVVVLGFRAADPTGYGRLIVKG--GRLVAIVE 158

Length = 446

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)

Query: 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 297
           S K+    +I  N ++ E   IG+G +IGP V +G G V+     +    T+  G  I  
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 298 HACI--SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 337
              I  S ++IG     +    G W ++  +   I+G+DV    EI +N
Sbjct: 61  R-VIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV----EIGAN 104

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 46/219 (21%)

Query: 1   MKALILVGGFGTRLRPL-TLSVPKPLVE-FANKPMILHQIEALKAVGVTE---VVLAINY 55
           +  +IL GG GTRL PL   S PK  ++ F +K ++   ++ LK +   +   VV    Y
Sbjct: 1   IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY 60

Query: 56  QPEVMLNFLKEFEAKL-GIKIICSQETEPLG--TAGPLALA-RDKLIDDTGEPFFVLNSD 111
           +  V     ++    L    II     EP G  TA  +ALA       D      VL SD
Sbjct: 61  RFLV----REQLPEGLPEENII----LEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSD 112

Query: 112 -VISEYP-FAEMIEFHKAHGGEAS---------IMVDEPS-KYGVVVMEESTG----KVE 155
            +I +   F + ++       EA+         I    P   YG +   E  G    +V+
Sbjct: 113 HLIEDVEAFLKAVK----KAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRVK 168

Query: 156 KFVEKPKL-----FV--GNKI-NAGIYLLNPAV-LDRIE 185
           +FVEKP L     ++  GN + N+GI+L      L+ ++
Sbjct: 169 RFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELK 207

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 27/143 (18%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            +IL GG  +R+        K L+    KP++   ++ L+     EVV+  N        
Sbjct: 1   GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE----- 49

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPL-----ALARDKLIDDTGEPFFVLNSDV--ISE 115
            +    A LG+ ++     +P    GPL      L          +   VL  D+  ++ 
Sbjct: 50  -IAAALAGLGVPVVP----DPDPGQGPLAGLAAGLRAAP----DADAVLVLACDMPFLTP 100

Query: 116 YPFAEMIEFHKAHGGEASIMVDE 138
                ++   +A G + ++ V +
Sbjct: 101 DLLRRLLAALEASGADIAVPVYD 123

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 13/176 (7%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +I + G G+R +    + PKPL+E   KPMI   IE+L  +  +  +             
Sbjct: 2   IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICR-DEHNTKFH 60

Query: 64  LKEFEAKLGI---KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
           L E   KL      ++     E LG A  + LA D + +D   P  + N D I E     
Sbjct: 61  LDE-SLKLLAPNATVVELDG-ETLGAACTVLLAADLIDNDD--PLLIFNCDQIVESDLLA 116

Query: 121 MIEFHKAHGGEASIMVDEPS--KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
            +   +    +  ++    S  ++  V ++E+ G+V +  EK    + +   AG+Y
Sbjct: 117 FLAAFRERDLDGGVLTFFSSHPRWSYVKLDEN-GRVIETAEKEP--ISDLATAGLY 169

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231

>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 16/111 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M A+I+ GG GTR+        KPL+E   KP+I   +EAL+ + V E+++AI+      
Sbjct: 1   MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAISPHTPK- 54

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111
               KE+   +G+K+I   ET   G    L  A    ++  G P  V+++D
Sbjct: 55  ---TKEYLESVGVKVI---ETPGEGYVEDLRFA----LESLGTPILVVSAD 95

Length = 177

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 53/359 (14%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G GTR+R  T   PK L   A + M+ H + A   +    +V+ + +  E +  
Sbjct: 7   VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAP 63

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            + E   ++ I +   Q+ E  GT   +  A + L  D      V   DV  +     A+
Sbjct: 64  AVAELAPEVDIAV---QD-EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLAD 119

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGI 173
           ++  H A G   +++   +D+P+ YG ++  +  G+V   VE+    P      ++N+G+
Sbjct: 120 LVATHTAEGNAVTVLTTTLDDPTGYGRIL-RDQDGEVTAIVEQKDATPSQRAIREVNSGV 178

Query: 174 YLLNPAVL-DRI-ELRPTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYIT 225
           Y  + AVL   +  L   + + E++    L        ++ A                + 
Sbjct: 179 YAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAE--------VA 230

Query: 226 GL--RLYLDSLRKKSSLKLATGANIVGNVLVHESAQ--IGEGCLIGPDVAVGPG------ 275
           G+  R+ L +L  + + ++       G V + + A   I     IG DV + PG      
Sbjct: 231 GVNDRVQLAALGAELNRRIVEAWMRAG-VTIVDPATTWIDVDVTIGRDVVIHPGTQLLGR 289

Query: 276 ------CVVESGVRLSRCTVMRGVR-IKKHACISSSIIGWHSTVGQWARVENMTILGED 327
                  VV     L+  TV  G   ++ H   S S IG  +TVG +  +   T+LGE+
Sbjct: 290 TTIGEDAVVGPDTTLTDVTVGEGASVVRTHG--SESEIGAGATVGPFTYLRPGTVLGEE 346

Length = 482

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 312
           +H SA I     IG  V++GP  V+ +GV +     +  G  I          IG    +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDG-----VKIGADCRL 157

Query: 313 GQWARVENMTILGEDVHV 330
                + +   +G  V +
Sbjct: 158 HANVTIYHAVRIGNRVII 175

Length = 343

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 297
           S K+  G  I  NV++    +IGE  +IGP V +G   V+  G R+     +   V++ K
Sbjct: 103 SAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGK 162

Query: 298 HACI-SSSIIGW------HSTVGQWARVENM--TILGEDVHV 330
           +  I S ++IG       H+  G   ++  +   I+ +DV +
Sbjct: 163 NVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEI 204

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 64/285 (22%), Positives = 102/285 (35%), Gaps = 79/285 (27%)

Query: 118 FAEMIEFHKAHGGEASIM-----VDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-----N 167
             +M++FH   G   ++       +E S +GV+ ++   G++  F+EKP    G     +
Sbjct: 133 PRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD-GRIRGFLEKPADPPGLPDDPD 191

Query: 168 KINA--GIYLLNPAVLDRIELR-----PTSIE---KEVFPKIALEGKLFAM-----VLPG 212
           +  A  G Y+     L    LR       S      ++ P++   G+ +        +PG
Sbjct: 192 EALASMGNYVFTTDALVD-ALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPG 250

Query: 213 -------FWMDIG---------------QPRDYITGLRLYLDSLRKKSSLKLATGANIVG 250
                  +W D+G                P        LY       +S      A  V 
Sbjct: 251 ATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-----FNLYNREWPIYTSSPNLPPAKFVD 305

Query: 251 NVLVHESAQ---IGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISS 303
                 SAQ   +  G +I G  V    + P  VVESG  +    +M GVRI + A +  
Sbjct: 306 GGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365

Query: 304 SIIGWHSTVGQWARVENMTILGEDV-------HVCDEIYSNGGVV 341
           +I+  +  V         TI G D+        V     S GG+V
Sbjct: 366 AILDKNVVVP-----PGATI-GVDLEEDRRRFTV-----SEGGIV 399

Length = 407

>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 70/236 (29%), Positives = 99/236 (41%), Gaps = 48/236 (20%)

Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+I V G GTR+ P T ++PK ++   +KP+I + +    A G+TE+VL  +     + 
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69

Query: 62  NFLK---EFEAKL----------GIKIICSQETEPLGTAGPLA-------LARDKLIDDT 101
           N      E EA L           ++ IC      +     LA       L    ++ D 
Sbjct: 70  NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128

Query: 102 GEPFFVLNSDVI-SEYP-------FAEMIE-FHKAHGGEASIMVDEP----SKYGVVVME 148
            EP  V+  DVI  EY         AEMI  F +   G + IMV EP    + YGVV  +
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFDET--GHSQIMV-EPVADVTAYGVVDCK 184

Query: 149 -------ESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV 195
                  ES   V   VEKPK  V   N    G Y+L+  +   +   P     E+
Sbjct: 185 GVELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEI 239

Length = 302

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 300
            + +GA I G V++ +  +IG    I     +G GCVV + V +    +M G ++     
Sbjct: 25  IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNY 84

Query: 301 ISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           +  S++G +  +G      N+    + V V
Sbjct: 85  VGDSVLGENVNLGAGTITANLRFDDKPVKV 114

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
           +H +A I  G  IG +V +GP C+V  GV++       GV +K H  I       H+T+G
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIG-----DGVELKSHVVILG-----HTTIG 50

Query: 314 QWARVENMTILGED 327
           +  R+    ++G  
Sbjct: 51  EGTRIFPGAVIGGV 64

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 74/351 (21%), Positives = 139/351 (39%), Gaps = 69/351 (19%)

Query: 5   ILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64
           IL  G GTR++    S+PK L     K ++   +++ + +     ++ + +Q E +   L
Sbjct: 6   ILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSL 62

Query: 65  KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMI 122
                  G++ +  ++   LGT   +      L    G+   VLN DV  +       ++
Sbjct: 63  AHLP---GLEFV--EQQPQLGTGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALL 116

Query: 123 EFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYL 175
             H++   + +++   +  P  YG V  + +   VE+ VE     P     N+INAGIY 
Sbjct: 117 NTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQNNRINAGIYC 175

Query: 176 LNPAVLDRI--ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL--RLYL 231
            N   L  +  +L   + +KE +    +     +++ P   +++      I G+  R  L
Sbjct: 176 FNWPALAEVLPKLSSNNDQKEYYLTDTV-----SLLDPVMAVEVEDY-QEINGINDRKQL 229

Query: 232 --------DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAV----------- 272
                   + +++K  L   T  +         S  I E   +GPDV +           
Sbjct: 230 AQCEEILQNRIKEKWMLAGVTFID-------PASCTISETVELGPDVIIEPQTHLRGNTV 282

Query: 273 -------GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316
                  GPG ++E+       TV+       ++ +S S IG    +G +A
Sbjct: 283 IGSGCRIGPGSLIENSQIGENVTVL-------YSVVSDSQIGDGVKIGPYA 326

Length = 450

>gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 25/198 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSV-PKPLVEFA-NKPMILHQIEALKA-VGVTEVVLAINYQP 57
           M  +IL GG G+RL PL+    PK  ++   +  ++   ++ L     + E ++  N   
Sbjct: 2   MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTN--- 58

Query: 58  EVMLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFF-VLNSD-VI 113
           E     +KE   ++ I+       EP G  TA  +ALA      + G+    VL SD VI
Sbjct: 59  EKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVI 118

Query: 114 S-EYPFAEMIEFHKAHGGEASIMV------DEPS------KYGVVVMEESTGKVEKFVEK 160
           + E  F   ++       E   +V        P       + G  + E    KV++FVEK
Sbjct: 119 ADEEAFLNAVK-KAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKVDRFVEK 177

Query: 161 PKLFVGNK-INAGIYLLN 177
           P L    K + +G YL N
Sbjct: 178 PDLETAKKYVESGEYLWN 195

Length = 333

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVML 61
          A+IL  G G+R+      +PK  +E   KP++ H +EA  A   + E+V+ +   P   +
Sbjct: 3  AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVV---PPDDI 56

Query: 62 NFLKEFEAKLGIKII 76
          +  KE       K++
Sbjct: 57 DLAKELAKYGLSKVV 71

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 301
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 7   IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G  +R+        K L+    KP++ H ++A  A G++ V++ +  + + +  
Sbjct: 3   AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            L      +   +I     E + ++  LA   + L  D  +   +L +D   ++      
Sbjct: 58  ALAGLPVVV---VINPDWEEGMSSS--LAAGLEALPADA-DAVLILLADQPLVTAETLRA 111

Query: 121 MIEFHKAHGG 130
           +I+  +  G 
Sbjct: 112 LIDAFREDGA 121

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 301
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65

Length = 262

>gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          +  +IL GG   R+      V K L E   KP+I H IE L    V E+V+  N      
Sbjct: 4  ITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLAPQ-VDEIVINANRNLARY 58

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
                  A  G+ +I   ++      GPLA
Sbjct: 59 --------AAFGLPVI--PDSLA-DFPGPLA 78

Length = 193

>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 32/196 (16%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  +++
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62

Query: 61  LNFLKE------FEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-- 112
              L +       +A            E LGT   +  A     DD  E   +L  DV  
Sbjct: 63  KQTLADEPLNWVLQA------------EQLGTGHAMQQAAPFFADD--EDILMLYGDVPL 108

Query: 113 ISEYPFAEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGN 167
           IS      + +     G G  ++ +D P+ YG +  E   GKV   VE+     +     
Sbjct: 109 ISVETLQRLRDAKPQGGIGLLTVKLDNPTGYGRITRE--NGKVVGIVEQKDATDEQRQIQ 166

Query: 168 KINAGIYLLNPAVLDR 183
           +IN GI + N A L R
Sbjct: 167 EINTGILVANGADLKR 182

Length = 456

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 310
              +H +A I  G  IG DV +GP C++   V +       G  +K H  +       H+
Sbjct: 3   MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIG-----DGTVLKSHVVVEG-----HT 52

Query: 311 TVGQWARVENMTILGED 327
           T+G+  R+     +GED
Sbjct: 53  TIGRNNRIFPFASIGED 69

Length = 260

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 28/129 (21%)

Query: 118 FAEMIEFHKAHGGE---ASIMVDEPSKYGVVVME-ESTGKVEKFVEKPK----------- 162
           +   ++ H+  G +   A + VDE    G  +M+ +  G++ +F EKPK           
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDT 191

Query: 163 -LFVGNKINA---------GIYLLNPAVL-DRIELRPTSIE--KEVFPKIALEGKLFAMV 209
                +   A         GIY+ +  VL D +   P   +  KE+ P+   + K+ + +
Sbjct: 192 SRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYL 251

Query: 210 LPGFWMDIG 218
             G+W DIG
Sbjct: 252 FDGYWEDIG 260

Length = 429

>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 59/237 (24%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
           A+IL GG GTRL PLT    KP V F  +  ++     + + +    G+  V +   Y+ 
Sbjct: 1   AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS----GIRNVGVLTQYKS 56

Query: 58  EVMLNFLKE------FEAKLGIKIICSQETEP----LGTAGPLALARDKLIDDTGEPFFV 107
             + + L             G+ I+  Q+ +      GTA  +    D +     E   +
Sbjct: 57  RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLI 116

Query: 108 LNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGN 167
           L+ D I    + EM++FH   G + +++                                
Sbjct: 117 LSGDHIYNMDYREMLDFHIESGADITVVY------------------------------- 145

Query: 168 KINAGIYLLNPAVLDRIEL-----RPTSIE--KEVFPKIALEGKLFAMVLPGFWMDI 217
           K + GIY+ +  +L  IEL        S +  K++ P +  + K++A    G+W DI
Sbjct: 146 KASMGIYIFSKDLL--IELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200

>gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          +  +IL GG   R+        K L+E   KP++ H +E LK + V EVV++ N      
Sbjct: 1  ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQ--- 51

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
               E  A LG+ +I     +     GPLA
Sbjct: 52 -----ERYALLGVPVI----PDEPPGKGPLA 73

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 296
            S K+  G +I  N ++     IG+G +IG    +G G  + +  RL +  T+   VRI 
Sbjct: 111 PSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIG 170

Query: 297 KHACI-SSSIIG 307
               I S ++IG
Sbjct: 171 NRVIIHSGAVIG 182

Length = 343

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 299
            +    +I  NV++     IGE  +IG    +G    +  G  +    T+   V I  + 
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172

Query: 300 CISS-SIIG 307
            I S ++IG
Sbjct: 173 IIHSGAVIG 181

Length = 338

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 310
              +H +A +  G  IG +V +GP CV+   V +       G  I  H  I       H+
Sbjct: 2   MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIG-----DGTVIGSHVVIDG-----HT 51

Query: 311 TVGQWARVENMTILGED 327
           T+G+  R+     +GED
Sbjct: 52  TIGKNNRIFPFASIGED 68

Length = 262

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 19/91 (20%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          M  +IL GG   R+R       K L+    +P+I H I+ L+      V+ A   Q    
Sbjct: 5  MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGRY- 57

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
                  A+ G+ ++  +        GPLA
Sbjct: 58 --------AEFGLPVVPDELPG----FGPLA 76

Length = 192

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-SS 303
           A I    +V  SA+IG+G  IGP+V +G G  +   V +     +   V I   + I  +
Sbjct: 92  AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151

Query: 304 SIIGWHSTVGQWARVENMTILGED----VHVCDE----IYSNGGVVL 342
            +I     +G+   + +  ++G D     H  +     I   G V++
Sbjct: 152 VVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVII 198

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 30/105 (28%)

Query: 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 304
             NI    ++H     G   +IG +V VG G V+        CT+               
Sbjct: 44  RTNIQDGSVLHVDP--GYPTIIGDNVTVGHGAVLHG------CTIGDNC----------- 84

Query: 305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 349
           +IG  + +   A +   +I+             G +V P K I  
Sbjct: 85  LIGMGAIILDGAVIGKGSIVAA-----------GSLVPPGKVIPP 118

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          A+I   G GTR       VPK  +E   +P++ H ++A  A   + EVV+ ++
Sbjct: 2  AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217

>gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A+IL  GFG+R+      VPK  +E   +P++ H +EA      + E+V+ ++
Sbjct: 7  AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS 56

Length = 230

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 252 VLVHESA------QIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSS 304
            L+H SA       IGEGC+I     + P   +   V + +   +     I     I+  
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 305 -------IIGWHSTVGQWARVENMTILGEDVHV 330
                   IG  + +G  A +     +G    +
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAII 177

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 312
           +H +A +  G  IG +V +GP CV+   V +       G  I  H  I   + IG ++ +
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIG-----DGTVIGSHVVIDGPTTIGKNNRI 56

Query: 313 GQWA 316
             +A
Sbjct: 57  FPFA 60

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A+I   G G+R+       PK  +    KP++ H +EA  A   + E+++ + 
Sbjct: 6  AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVP 55

Length = 227

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANK 31
          M A+IL GG GTRL  LT ++ KP V F  K
Sbjct: 4  MLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34

Length = 380

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 254 VHESA--QIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHST 311
           V  S    IG   +I P+V  GPG  V S           G  I   + +  + +G  + 
Sbjct: 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVAS-----------GAVIHAFSHLEGAHVGEGAE 311

Query: 312 VGQWARVENMTILGEDVHV 330
           VG +AR+     LGE   V
Sbjct: 312 VGPYARLRPGAELGEGAKV 330

Length = 446

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 37.8 bits (89), Expect = 0.001
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 256 ESAQIGEGC----------LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 305
           +++ + EGC          ++   V VG G VVE  V      +M  V I ++A I  +I
Sbjct: 11  KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSV------IMPNVGIGRNAVIRRAI 64

Query: 306 IGWHSTVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 342
           I  +  +      + + I G+        Y +  G+V+
Sbjct: 65  IDKNVVIP-----DGVVIGGDPEEDRARFYVTEDGIVV 97

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV-----MRGVRIKKHACI-SSS 304
           NV +  +  I EG  I  DV +GP  VV +     R  +     ++G  +K+ A I +++
Sbjct: 22  NVKIQSNVSIYEGVTIEDDVFIGP-NVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80

Query: 305 IIGWHSTVGQWARV 318
            I    T+G++A V
Sbjct: 81  TILPGVTIGEYALV 94

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS------SSIIGWH 309
           E A++G+GC +GP   + PG V+E G R+     M+   + K A  +       + IG  
Sbjct: 320 EGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG 379

Query: 310 STVG 313
           + +G
Sbjct: 380 ANIG 383

Length = 456

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 312
           ++H +A I     +G  V +GP  V+ + V      +  G  I  HA     I+G  + +
Sbjct: 1   MIHPTAVIDPSAKLGSGVEIGPFAVIGANV-----EIGDGTWIGPHA----VILGP-TRI 50

Query: 313 GQWARVENMTILGED 327
           G+  ++    ++G++
Sbjct: 51  GKNNKIHQGAVVGDE 65

Length = 255

>gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           +IL GG   R+        K LVE   KP+I H +  L+   V+++ ++ N  PE    
Sbjct: 3  GVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRPQ-VSDLAISANRNPE---- 53

Query: 63 FLKEFEAKLGIKIICSQETEPLGTAGPLA 91
            +  +A  G+ ++     +     GPLA
Sbjct: 54 --RYAQAGFGLPVVPDALADF---PGPLA 77

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 186

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 257 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG 292
              IGE  LIGP+V +G G ++   V +    V+ G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 246 ANIVGNVLVHESAQIGEG------CLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKH 298
           A I    ++   A+IGE       C+IGP+V +G G V++S V +    T+ R  RI   
Sbjct: 4   AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPF 63

Query: 299 ACI 301
           A I
Sbjct: 64  ASI 66

Length = 260

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 286
             ++ E+  IG   +IG  V +G   ++ +GV +  
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 296
            S  +  G  I+   +++   +IG+  +I     V   CV+   V ++   T+  GV I 
Sbjct: 89  PSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIG 148

Query: 297 KHACISSSIIGWHSTVGQWARVENMTILG 325
           +        IG  +T+ Q   +    ++G
Sbjct: 149 EGV-----FIGAGATIIQGVTIGAGAVVG 172

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           +IL GG   R+        K L+    KP+I   ++ L+      + L IN  P 
Sbjct: 8  GVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPA 58

Length = 366

>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score = 38.2 bits (90), Expect = 0.004
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLA 52
          KPL +   KPMI+   E     G   VV+A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48

Length = 245

>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLA 52
          KPL + A KPMI H  E A KA G+ EVV+A
Sbjct: 18 KPLADIAGKPMIQHVYERAKKAKGLDEVVVA 48

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	100.0
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	100.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	100.0
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	100.0
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	100.0
PRK10122	297	GalU regulator GalF; Provisional	100.0
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	100.0
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	100.0
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	100.0
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	100.0
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	100.0
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	100.0
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	100.0
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	100.0
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	100.0
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	100.0
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	100.0
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	100.0
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	100.0
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	100.0
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.97
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.97
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.97
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.96
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.95
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.94
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.94
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.94
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.93
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.93
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.93
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.92
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.9
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.87
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.83
PLN02917	293	CMP-KDO synthetase	99.81
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.8
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.78
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.76
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	99.75
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.71
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.7
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.68
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.68
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.67
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.67
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.67
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.66
COG2068	199	Uncharacterized MobA-related protein [General func	99.66
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.66
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.66
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.65
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.65
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.64
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.64
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.64
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.63
PLN02296	269	carbonate dehydratase	99.62
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.62
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.62
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.62
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.61
PRK13627	196	carnitine operon protein CaiE; Provisional	99.61
PLN02472	246	uncharacterized protein	99.61
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.61
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.6
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.6
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.59
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.59
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.59
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.59
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	99.59
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.58
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.58
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.58
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.58
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.57
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.57
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.57
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.57
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.56
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.56
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.56
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.56
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.55
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.55
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.54
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.54
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.54
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.53
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.53
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.52
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.5
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.5
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.5
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.5
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.49
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.49
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.48
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.48
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.48
PRK13627	196	carnitine operon protein CaiE; Provisional	99.48
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.48
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.47
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.47
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.47
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.47
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.46
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.46
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.46
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.46
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.46
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.46
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.46
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.46
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.45
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.44
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.44
PLN02296	269	carbonate dehydratase	99.43
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.43
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.43
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.42
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.41
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.41
PLN02472	246	uncharacterized protein	99.41
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.4
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.4
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.38
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.38
PRK11132	273	cysE serine acetyltransferase; Provisional	99.38
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.38
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.37
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.37
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.37
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.37
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.37
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.37
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.37
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.36
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.35
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.35
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.35
PLN02694	294	serine O-acetyltransferase	99.35
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.34
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.34
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.32
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.31
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.31
PRK10502	182	putative acyl transferase; Provisional	99.3
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.3
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.28
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.27
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.27
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.27
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.26
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.26
PRK10092	183	maltose O-acetyltransferase; Provisional	99.26
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.25
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.25
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.25
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.25
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.24
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	99.24
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.23
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.22
PLN02357	360	serine acetyltransferase	99.21
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.21
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.2
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.19
PRK10191	146	putative acyl transferase; Provisional	99.19
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.19
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.18
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.14
PLN02739	355	serine acetyltransferase	99.14
PRK10191	146	putative acyl transferase; Provisional	99.13
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.12
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.11
PRK10502	182	putative acyl transferase; Provisional	99.1
PRK11132	273	cysE serine acetyltransferase; Provisional	99.09
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.08
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.08
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.05
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.05
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.03
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.03
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.02
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.02
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.01
PLN02694	294	serine O-acetyltransferase	99.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.98
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.98
PLN02357	360	serine acetyltransferase	98.97
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.97
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.97
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.95
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.95
PLN02739	355	serine acetyltransferase	98.95
PRK10092	183	maltose O-acetyltransferase; Provisional	98.92
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.89
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.89
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.89
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.87
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	98.83
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.81
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.81
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.8
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.72
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.69
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.67
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	98.65
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.65
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.64
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.61
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	98.51
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.5
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.47
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.45
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	98.39
COG4801	277	Predicted acyltransferase [General function predic	98.28
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.27
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	98.16
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	98.14
COG4801	277	Predicted acyltransferase [General function predic	98.05
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	98.05
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.97
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	97.93
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	97.82
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.74
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	97.69
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	97.65
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.62
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	97.57
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	97.18
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	97.06
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.69
PLN02830	615	UDP-sugar pyrophosphorylase	96.58
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	96.44
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	95.89
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	95.57
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	95.45
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	95.37
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	95.14
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	95.03
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	94.73
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	94.41
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	94.2
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	93.88
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	93.77
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	93.23
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	93.18
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	92.16
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	92.12
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	91.94
PRK11204	420	N-glycosyltransferase; Provisional	91.93
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	91.89
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	91.64
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	91.34
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	91.14
cd06438	183	EpsO_like EpsO protein participates in the methano	91.04
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	90.81
KOG2638	498	consensus UDP-glucose pyrophosphorylase [Carbohydr	90.57
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	90.17
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	90.03
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	89.94
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	89.4
PRK14583	444	hmsR N-glycosyltransferase; Provisional	89.36
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	88.18
PRK10073	328	putative glycosyl transferase; Provisional	87.19
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	87.03
COG1664	146	CcmA Integral membrane protein CcmA involved in ce	86.67
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	85.93
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	85.9
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	85.58
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	84.69
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	83.55
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	83.48
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	83.17
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	82.31
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	81.84
COG1664	146	CcmA Integral membrane protein CcmA involved in ce	80.93
COG1215	439	Glycosyltransferases, probably involved in cell wa	80.88
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	80.23

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6e-65  Score=431.43  Aligned_cols=358  Identities=59%  Similarity=0.980  Sum_probs=337.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHH-hhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLK-EFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~-~~~~~~~~~i~~~~   79 (358)
                      |+|+||.+|.|+||+|||..+||++.|++|+|||++++++|.++|+++|++.+++..+++..|+. .+...+|+++.+..
T Consensus        10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~   89 (371)
T KOG1322|consen   10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST   89 (371)
T ss_pred             eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999998886666654 46678899999999


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      ++++.|+++.+..+++++....+.+|+|++||.++.+++.+++++|.++++++|+++   ++|++||++..|+++|+|.+
T Consensus        90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~  169 (371)
T KOG1322|consen   90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR  169 (371)
T ss_pred             ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence            999999999999999888544444899999999999999999999999999999998   78999999999996799999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK  236 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~  236 (358)
                      |.|||+.+.++.+++|+|+|+++++.+++..+.+++.+++|.++++.+++++.++|||.|+++|.||+++...|++....
T Consensus       170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~  249 (371)
T KOG1322|consen  170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK  249 (371)
T ss_pred             ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999998888


Q ss_pred             cCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCcc
Q 018327          237 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA  316 (358)
Q Consensus       237 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~  316 (358)
                      ....++.+++.+.++..+++.+.+|++|.|++|++||++|+|+++++|.+|.++.+..++..+.|.++++|.++.||.|+
T Consensus       250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~  329 (371)
T KOG1322|consen  250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA  329 (371)
T ss_pred             cCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCccEECCCcEECCceEEcCcEEccCceeccCCCCCcccC
Q 018327          317 RVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      +|.+++++|++++|.+.-.+.++.+.|++.+.-.++..+|+|
T Consensus       330 ~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~  371 (371)
T KOG1322|consen  330 RIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM  371 (371)
T ss_pred             EEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence            999999999999999999999889999999999988888876

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-57  Score=412.89  Aligned_cols=338  Identities=40%  Similarity=0.660  Sum_probs=295.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||+|+||+|+|..+||||+|++|||||+|+|++|.+.|++++++.+++..+.+++|+.+- ..+++.+.+..+
T Consensus         2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y~~e   80 (358)
T COG1208           2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITYVVE   80 (358)
T ss_pred             ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEEEec
Confidence            8999999999999999999999999999999999999999999999999999999999999999972 455789999999


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ..+.||+++++++.+.+  .. ++|++++||.+++.++.+++++|+++.+.+++..   .++..||++..+++++++..|
T Consensus        81 ~~~lGTag~l~~a~~~l--~~-~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f  157 (358)
T COG1208          81 KEPLGTAGALKNALDLL--GG-DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF  157 (358)
T ss_pred             CCcCccHHHHHHHHHhc--CC-CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence            99999999999999999  43 4999999999999999999999999876677766   555789999988543699999


Q ss_pred             eecCC--CCCCCeEEEEEEEEChhhhhhcc-CCCCCcccchHHHHHhcCc-eEEEeecCeEEecCCHHHHHHHHHHHHHh
Q 018327          158 VEKPK--LFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYITGLRLYLDS  233 (358)
Q Consensus       158 ~ek~~--~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~d~l~~l~~~~~-v~~~~~~~~~~di~t~~dy~~a~~~~l~~  233 (358)
                      .|||.  ...+.++++|+|+|++++|+++. ....++..++++.++++++ ++++.++++|.|+++|+||+++++.+++.
T Consensus       158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~  237 (358)
T COG1208         158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG  237 (358)
T ss_pred             EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence            99994  56788999999999999999776 3456777789999999998 99999999999999999999999999865


Q ss_pred             hcccCcccc-------cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEE
Q 018327          234 LRKKSSLKL-------ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII  306 (358)
Q Consensus       234 ~~~~~~~~~-------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i  306 (358)
                      .........       .. +.+.++++|++++.|++++.|+++++||++|+||+++.|.+|+|+++|.|++++.|.+|+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi  316 (358)
T COG1208         238 DGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSII  316 (358)
T ss_pred             cccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEE
Confidence            443322222       23 7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327          307 GWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       307 ~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~  350 (358)
                      +++|+||++.      .+|+ +++|.++.+. +..+.+++.+..+
T Consensus       317 ~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~~~~~~~  354 (358)
T COG1208         317 GENCKIGASL------IIGD-VVIGINSEILPGVVVGPGSVVESG  354 (358)
T ss_pred             cCCcEECCce------eecc-eEecCceEEcCceEeCCCccccCc
Confidence            9999999922      2777 8888877775 4444555554443

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=7.6e-53  Score=391.73  Aligned_cols=342  Identities=26%  Similarity=0.376  Sum_probs=259.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccC-------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------   72 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~-------   72 (358)
                      |+|||||||+|+||+|+|..+||+|+|++|| |||+|+|++|.++|+++++|++++..+.+.+|+.+. +.|+       
T Consensus         4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~   82 (380)
T PRK05293          4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG   82 (380)
T ss_pred             EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence            8999999999999999999999999999999 899999999999999999999999999999999752 2333       


Q ss_pred             cEEE--EeccCC---cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCe
Q 018327           73 IKII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKY  142 (358)
Q Consensus        73 ~~i~--~~~~~~---~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~  142 (358)
                      +.+.  +..+.+   +.|++++++++++.+....+++||+++||.+++.++.++++.|.++++++++++     +++..|
T Consensus        83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y  162 (380)
T PRK05293         83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF  162 (380)
T ss_pred             EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence            3332  333332   479999999999998432234899999999999999999999988888877765     467889


Q ss_pred             eeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-cC------CCCCcccchHHHHHhcC-ceEEEeecCeE
Q 018327          143 GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW  214 (358)
Q Consensus       143 ~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~~  214 (358)
                      |++..|++ ++|.++.|||..+.+++.++|+|+|+++.|..+ ..      ...++..|+++.+++++ +++++..+++|
T Consensus       163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w  241 (380)
T PRK05293        163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW  241 (380)
T ss_pred             CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence            99999876 899999999977778899999999999988643 21      12345578999998765 59999999999


Q ss_pred             EecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcE
Q 018327          215 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR  294 (358)
Q Consensus       215 ~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~  294 (358)
                      .|++++++|+++++.++......  ....+...+.+...+.+.+.|++++.| .++.||++|.|+.  .+.+|+|+++|.
T Consensus       242 ~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~  316 (380)
T PRK05293        242 KDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQ  316 (380)
T ss_pred             EeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCE
Confidence            99999999999998887543221  111222233333344444555555555 3666777777753  455777777777


Q ss_pred             ECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-----cEEccCceeccC
Q 018327          295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-----GVVLPHKEIKSS  350 (358)
Q Consensus       295 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-----~~v~~~~~i~~~  350 (358)
                      |+++|+|.+|+|+++|.||+++.|.+ |+|+++++|++++.+.+     .+++.+..|..+
T Consensus       317 I~~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~  376 (380)
T PRK05293        317 VGEGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENEVIGVG  376 (380)
T ss_pred             ECCCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence            77777777777777777777777766 77777777777777765     444555544443

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-53  Score=356.55  Aligned_cols=356  Identities=39%  Similarity=0.726  Sum_probs=323.3

Q ss_pred             eEEEEecC--CccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327            2 KALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         2 ~avIla~G--~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~   78 (358)
                      +||||.+|  +|+||+|++-+.||+|+|++|+|||.|.|+.+.+. |..+|+++.=++.+.+.+|+....+.+.+.+.|+
T Consensus         4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL   83 (407)
T KOG1460|consen    4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL   83 (407)
T ss_pred             EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence            69999998  79999999999999999999999999999999776 5999999888888899999998888889999999


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCCCc
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~  153 (358)
                      .++.+.|+++.+++.++.+-..+.+.++++++|.-+.++|+++++.|++.+...+++.     ++..+||.+..|++|++
T Consensus        84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e  163 (407)
T KOG1460|consen   84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE  163 (407)
T ss_pred             ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence            9999999999999999988777777999999999999999999999999999888887     67789999999998999


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEEChhhhhhccC--------------------CCC---CcccchHHHHHhcCceEEEee
Q 018327          154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL--------------------RPT---SIEKEVFPKIALEGKLFAMVL  210 (358)
Q Consensus       154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~--------------------~~~---~~~~d~l~~l~~~~~v~~~~~  210 (358)
                      |+++.|||..+.++.+++|+|+|++++|+.+.+                    .+.   .++.|++..|+.++++|+|..
T Consensus       164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t  243 (407)
T KOG1460|consen  164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET  243 (407)
T ss_pred             eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence            999999999999999999999999999875521                    112   345689999999999999999


Q ss_pred             cCeEEecCCHHHHHHHHHHHHHhhcccCccccc--CC--cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEee
Q 018327          211 PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLA--TG--ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR  286 (358)
Q Consensus       211 ~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~--~~--~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~  286 (358)
                      +++|..+.|+-.-+.+++.+|..+...-...+.  ++  +.|.++++|+|++++++.++|++|+.||.+++||++++|.+
T Consensus       244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~  323 (407)
T KOG1460|consen  244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE  323 (407)
T ss_pred             ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeee
Confidence            999999999999999999999877665555553  33  45999999999999999999999999999999999999999


Q ss_pred             eEECCCcEECCCcEEeccEEccCCEECCccEEcC-------------ccEECCCcEECCceEEcCcEEccCceeccCCCC
Q 018327          287 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK  353 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------------~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~  353 (358)
                      |+|.+++.|.+|+++-+|+||.++.||.|+++..             =.++|+.+.+++.+.+.++.+.|++.+..+..+
T Consensus       324 sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~  403 (407)
T KOG1460|consen  324 SIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELNVSVQD  403 (407)
T ss_pred             eeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccceeeec
Confidence            9999999999999999999999999999999885             267899999999999999999999999988877


Q ss_pred             CcccC
Q 018327          354 PEIVM  358 (358)
Q Consensus       354 ~~~~~  358 (358)
                       +|+|
T Consensus       404 -eIil  407 (407)
T KOG1460|consen  404 -EIIL  407 (407)
T ss_pred             -ceeC
Confidence             6654

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-52  Score=368.98  Aligned_cols=331  Identities=25%  Similarity=0.424  Sum_probs=287.0

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcc-hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh---hh---hccCcE
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE---AKLGIK   74 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~---~~---~~~~~~   74 (358)
                      -|+|||+|.|+||.|||+.++||-+|++||. +|+++|.++.++|+++|.|++.++...+.+|+.+   |.   +..++.
T Consensus         7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~   86 (393)
T COG0448           7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF   86 (393)
T ss_pred             EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence            4899999999999999999999999999999 9999999999999999999999999999999986   31   112233


Q ss_pred             EEEecc-----CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeee
Q 018327           75 IICSQE-----TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGV  144 (358)
Q Consensus        75 i~~~~~-----~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~  144 (358)
                      +..-.+     ....|+++++++.+..+++.+.+.++++.||++++.|+++++++|.+.++++|+++     ++++.+|+
T Consensus        87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi  166 (393)
T COG0448          87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV  166 (393)
T ss_pred             EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence            322111     13468999999999988877777999999999999999999999999999999998     67789999


Q ss_pred             EEEcCCCCcEEEEeecCCC-CCCC-eEEEEEEEEChhhhhhccC-------CCCCcccchHHHHHhcCceEEEeecCeEE
Q 018327          145 VVMEESTGKVEKFVEKPKL-FVGN-KINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEGKLFAMVLPGFWM  215 (358)
Q Consensus       145 ~~~d~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~~v~~~~~~~~~~  215 (358)
                      ..+|++ ++|+.|.|||.. +.++ +.++|+|+|+.+.|..+.+       ...+|..+++|.+++.+.+++|+++|||.
T Consensus       167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~  245 (393)
T COG0448         167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR  245 (393)
T ss_pred             eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence            999997 999999999987 4444 8999999999998875532       23578899999999999999999999999


Q ss_pred             ecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEE
Q 018327          216 DIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRI  295 (358)
Q Consensus       216 di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i  295 (358)
                      |++|.++|+++|+.+++.  ...-....+.-.|......-|.+++..++.+ .+|.|++||+|..  .|.||+|+.++.|
T Consensus       246 dVgTi~syy~aNmdLl~~--~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I  320 (393)
T COG0448         246 DVGTIDSYYEANMDLLSP--QPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRI  320 (393)
T ss_pred             hcccHHHHHHhhHHhcCC--CCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEE
Confidence            999999999999999861  1111123455567777777788888887777 4999999999998  8999999999999


Q ss_pred             CCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          296 KKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       296 ~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      +.+|.|.+|+|+++|.||.+|.|.+ ++|.++|+|++|+.+++.
T Consensus       321 ~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         321 GKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             CCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence            9999999999999999999999999 999999999999999876

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2.2e-51  Score=383.67  Aligned_cols=333  Identities=20%  Similarity=0.300  Sum_probs=255.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe-
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS-   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~-   78 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|| |||+|+|++|.++|+++++|++++..+.+.+|+.+.....++...+. 
T Consensus         6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK00844          6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT   85 (407)
T ss_pred             eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence            6899999999999999999999999999999 99999999999999999999999999999999974111111211121 


Q ss_pred             --ccC------CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeE
Q 018327           79 --QET------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVV  145 (358)
Q Consensus        79 --~~~------~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  145 (358)
                        .++      .+.|++++++++++++.+...++|++++||.+++.++.+++++|.++++++++++     +++..||++
T Consensus        86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv  165 (407)
T PRK00844         86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI  165 (407)
T ss_pred             ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence              211      1579999999999999543323699999999999999999999998888888776     466889999


Q ss_pred             EEcCCCCcEEEEeecCCCCC-------CCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcCceEEEee-
Q 018327          146 VMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL-  210 (358)
Q Consensus       146 ~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~v~~~~~-  210 (358)
                      ..|++ ++|..|.|||....       +.++++|+|+|++++| +.+..      ...++..|+++.+++++.+++|.+ 
T Consensus       166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~  244 (407)
T PRK00844        166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS  244 (407)
T ss_pred             EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence            99986 89999999986432       5689999999999986 44542      334566799999999989999865 


Q ss_pred             -----------cCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEEC-CC--cEECCCcEECCCC
Q 018327          211 -----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIG-EG--CLIGPDVAVGPGC  276 (358)
Q Consensus       211 -----------~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~--~~i~~~~~ig~~~  276 (358)
                                 +++|.|+++|++|+++++.+++.....  ....+...+.+.....+.+.+. ..  ..+.++++||++|
T Consensus       245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~  322 (407)
T PRK00844        245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVF--NLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGS  322 (407)
T ss_pred             cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCcc--ccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCC
Confidence                       589999999999999999999643221  0001111111111111112211 11  1233578888888


Q ss_pred             EECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          277 VVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       277 ~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .|+ ++.|.+|+|+++|.|+++|.|.+|+|+++|.||+++.|.+ |+|+++++|++++.+.+
T Consensus       323 ~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        323 IIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV  382 (407)
T ss_pred             EEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence            887 7888888888888888888888888888888888888877 88888888888888765

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=5e-50  Score=369.05  Aligned_cols=336  Identities=28%  Similarity=0.465  Sum_probs=279.7

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++ ..+.+.+|+.+ ...+++.+.+..+
T Consensus         1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~   79 (353)
T TIGR01208         1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ   79 (353)
T ss_pred             CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence            699999999999999999999999999999999999999999999999999999 88899999976 2455677777767


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ..+.|++++++.+++.+  ..+ +|++++||.+++.++.++++.|.++++++++++   +++..|+++..|++ ++|..+
T Consensus        80 ~~~~G~~~al~~a~~~l--~~~-~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~  155 (353)
T TIGR01208        80 GEPLGLAHAVYTARDFL--GDD-DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL  155 (353)
T ss_pred             CCCCCHHHHHHHHHHhc--CCC-CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence            77889999999999998  333 899999999999999999999998888888777   66778998888754 789999


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      .|||....+++.++|+|+|++.+++.+.+.     ......++++.+++++ ++++|.++++|.|++||+||+++++.++
T Consensus       156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll  235 (353)
T TIGR01208       156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL  235 (353)
T ss_pred             EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence            999987778899999999999888877421     1223367889998876 5999999999999999999999999999


Q ss_pred             HhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCC
Q 018327          232 DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ++...... .+.+.+.+.++++|++++.| .+++|.+++.||++|.|+ ++.|. +|+|+++|.|+ +|.|.+|+|++++
T Consensus       236 ~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~  311 (353)
T TIGR01208       236 DEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDES  311 (353)
T ss_pred             hhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCC
Confidence            75433222 25667788888888888888 777777788888888887 44555 78888888886 6778889999999


Q ss_pred             EECCcc-EEcCccEECCCcEECCceEEcC---cEEccCcee
Q 018327          311 TVGQWA-RVENMTILGEDVHVCDEIYSNG---GVVLPHKEI  347 (358)
Q Consensus       311 ~ig~~~-~i~~~~~i~~~~~i~~~~~i~~---~~v~~~~~i  347 (358)
                      .|+.+. .+.+ ++++++++|+.++.+.+   ..++.++.|
T Consensus       312 ~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~  351 (353)
T TIGR01208       312 VIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQV  351 (353)
T ss_pred             EEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCcee
Confidence            998884 7765 99999999999988863   344555444

Alternate name: dTDP-D-glucose synthase

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=6.9e-50  Score=375.15  Aligned_cols=316  Identities=23%  Similarity=0.375  Sum_probs=230.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh--cc--C-cE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA--KL--G-IK   74 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--~~--~-~~   74 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+...  .+  + +.
T Consensus         4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~   83 (429)
T PRK02862          4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE   83 (429)
T ss_pred             EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence            4799999999999999999999999999999 99999999999999999999999998999999975111  11  2 22


Q ss_pred             EEEeccCC-----cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeee
Q 018327           75 IICSQETE-----PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGV  144 (358)
Q Consensus        75 i~~~~~~~-----~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~  144 (358)
                      +.+..+..     ..|++++++++++.+....+++|++++||.+++.++.++++.|.+.++++++++     +++..||+
T Consensus        84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~  163 (429)
T PRK02862         84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL  163 (429)
T ss_pred             EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence            22222211     279999999999998543335899999999999999999999998888888776     34678999


Q ss_pred             EEEcCCCCcEEEEeecCCCC---------------------CCCeEEEEEEEEChhhhhhc-cCC--CCCcccchHHHHH
Q 018327          145 VVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIA  200 (358)
Q Consensus       145 ~~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~~--~~~~~~d~l~~l~  200 (358)
                      +..|++ +++..|.|||...                     ...++++|+|+|++++|..+ .+.  ..++..+++++++
T Consensus       164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~  242 (429)
T PRK02862        164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI  242 (429)
T ss_pred             EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence            999876 8999999998631                     23588999999999999644 332  2456679999999


Q ss_pred             hcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEec----------------ceEECCCCEECCCc
Q 018327          201 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVG----------------NVLVHESAQIGEGC  264 (358)
Q Consensus       201 ~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~----------------~~~i~~~~~i~~~~  264 (358)
                      +++++++|..+++|.|++||++|+++|+.++........ ...+...+..                +++|++++.| +++
T Consensus       243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~  320 (429)
T PRK02862        243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFS-FYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNC  320 (429)
T ss_pred             ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCccc-ccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCc
Confidence            888999999999999999999999999988732211100 1111222222                2455555555 445


Q ss_pred             EECCCcEECCCCEECCCcEEeeeEECC-------------------CcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          265 LIGPDVAVGPGCVVESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       265 ~i~~~~~ig~~~~ig~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      .|. +|+||++|+||++|+|.+|+|+.                   ++.||++|+|.+++|+++|.||+++++.+
T Consensus       321 ~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~  394 (429)
T PRK02862        321 SIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN  394 (429)
T ss_pred             EEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence            553 45555555555555555555543                   35555555555555555555555555543

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.5e-49  Score=372.41  Aligned_cols=333  Identities=23%  Similarity=0.344  Sum_probs=248.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcc-hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hh--h-ccCcEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE--A-KLGIKI   75 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~--~-~~~~~i   75 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+| ||+|+|++|.++|+++++|++++..+.+.+|+.+ |.  + ..+..+
T Consensus        16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i   95 (425)
T PRK00725         16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV   95 (425)
T ss_pred             eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence            46999999999999999999999999999997 9999999999999999999999999999999975 21  0 111112


Q ss_pred             EEe-------ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCee
Q 018327           76 ICS-------QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYG  143 (358)
Q Consensus        76 ~~~-------~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~  143 (358)
                      .+.       .+..+.|++++++++++++....+++|+|++||.+++.++.++++.|.++++++++++     +++..||
T Consensus        96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG  175 (425)
T PRK00725         96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG  175 (425)
T ss_pred             EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence            111       1223579999999999999543334899999999999999999999998888888876     4678999


Q ss_pred             eEEEcCCCCcEEEEeecCCCC-------CCCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcCceEEEe
Q 018327          144 VVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMV  209 (358)
Q Consensus       144 ~~~~d~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~v~~~~  209 (358)
                      ++..|++ ++|..|.|||...       .+.+.++|+|+|++++|. .|.+      ...++..|+++.+++++++++|.
T Consensus       176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~  254 (425)
T PRK00725        176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP  254 (425)
T ss_pred             EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence            9999986 8999999998643       256899999999999874 4432      22356679999999999999998


Q ss_pred             ec-----------CeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEE---CCC--cEECCCcEEC
Q 018327          210 LP-----------GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI---GEG--CLIGPDVAVG  273 (358)
Q Consensus       210 ~~-----------~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~--~~i~~~~~ig  273 (358)
                      ++           ++|.|+++|++|+++++.++......  ........+.......+.+.+   +.+  +.+ .+|+||
T Consensus       255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~--~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~-~~s~i~  331 (425)
T PRK00725        255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPEL--DLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMA-INSLVS  331 (425)
T ss_pred             ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchh--hccCCCCccccCCCCCCCCeEeccCCCCcceE-EeCEEc
Confidence            85           59999999999999999988532110  000011111111111111111   111  122 367777


Q ss_pred             CCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          274 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       274 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      ++|+| ++|.|.+|+|+++|.|+++|.|.+|+|+++|.||++++|.+ |+|+++++|++++.+++.
T Consensus       332 ~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        332 GGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             CCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEECCC
Confidence            77777 57777777777777777777777777777777777777766 777777777777777543

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=9.9e-50  Score=369.23  Aligned_cols=336  Identities=20%  Similarity=0.303  Sum_probs=260.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChH-HHHHHHHhhhhccCcEE---
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKI---   75 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i---   75 (358)
                      |+|||||+|+|+||+|+|..+||||+|++|| |||+|+|++|.++|++++++++++..+ ++++|+.+ ...|++.+   
T Consensus         3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~   81 (369)
T TIGR02092         3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD   81 (369)
T ss_pred             EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence            7899999999999999999999999999999 999999999999999999999999876 99999975 23344432   


Q ss_pred             ---EEeccCC-c--CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---c--CCCCee-
Q 018327           76 ---ICSQETE-P--LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---D--EPSKYG-  143 (358)
Q Consensus        76 ---~~~~~~~-~--~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~~-  143 (358)
                         .+..+.. .  .|++.+++++++.+....+++|++++||.+++.++.+++++|.++++++|+++   +  ++..|| 
T Consensus        82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~  161 (369)
T TIGR02092        82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT  161 (369)
T ss_pred             cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence               1222222 2  25666788888888422234899999999999999999999999888888886   2  457775 


Q ss_pred             eEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-c----CCCCCcccchHHHHHhcCceEEEeecCeEEecC
Q 018327          144 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-E----LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG  218 (358)
Q Consensus       144 ~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~----~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~  218 (358)
                      ++..|++ +++..+.+++........++|+|+|+++.+..+ .    .....+..++++.+++++.++++..+++|.|++
T Consensus       162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg  240 (369)
T TIGR02092       162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN  240 (369)
T ss_pred             EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence            4556665 788877544333334578999999999876433 2    112233357888888778899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcccCcccc-cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327          219 QPRDYITGLRLYLDSLRKKSSLKL-ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  297 (358)
Q Consensus       219 t~~dy~~a~~~~l~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~  297 (358)
                      ||++|+++++.+++.+....  .+ .....+.....+.+.+.|++++.| ++|+||++|+|+  +.|.+|+|+++|.|++
T Consensus       241 t~~~l~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~  315 (369)
T TIGR02092       241 SVKSYYKANMDLLDPQNFQS--LFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGK  315 (369)
T ss_pred             CHHHHHHHHHHHhCCcchhh--hcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECC
Confidence            99999999999887543211  11 111112111223356666677777 589999999997  3688999999999999


Q ss_pred             CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327          298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  344 (358)
Q Consensus       298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~  344 (358)
                      +|.|.+|++++++.|++++.+.+ |+||++++|++++.+.+....|.
T Consensus       316 ~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~~  361 (369)
T TIGR02092       316 DALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQPL  361 (369)
T ss_pred             CCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCccE
Confidence            99999999999999999999988 99999999999999977654443

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=5.3e-49  Score=370.20  Aligned_cols=317  Identities=22%  Similarity=0.361  Sum_probs=254.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh--------cc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA--------KL   71 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--------~~   71 (358)
                      |+|||||||+|+||+|+|..+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+...        ..
T Consensus         4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~   83 (436)
T PLN02241          4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG   83 (436)
T ss_pred             eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence            7899999999999999999999999999997 99999999999999999999999999999999985110        01


Q ss_pred             CcEEEEeccC-----CcCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cC
Q 018327           72 GIKIICSQET-----EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DE  138 (358)
Q Consensus        72 ~~~i~~~~~~-----~~~g~~~sl~~~~~~i~~~~---~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~  138 (358)
                      ++.+.+..+.     .+.|++++++.++.++++..   +++||+++||.+++.++.+++++|.++++++++++     ++
T Consensus        84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~  163 (436)
T PLN02241         84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR  163 (436)
T ss_pred             CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence            1333333232     36799999999887764321   34999999999999999999999999988888887     34


Q ss_pred             CCCeeeEEEcCCCCcEEEEeecCCCCC---------------------CCeEEEEEEEEChhhhhhc-cC---CCCCccc
Q 018327          139 PSKYGVVVMEESTGKVEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEK  193 (358)
Q Consensus       139 ~~~~~~~~~d~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~  193 (358)
                      ++.||++.+|++ ++|..+.|||....                     .++.++|+|+|+++.|..+ .+   ...++..
T Consensus       164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~  242 (436)
T PLN02241        164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS  242 (436)
T ss_pred             cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence            689999999876 89999999986432                     3789999999999998644 32   2235667


Q ss_pred             chHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc-----cCcc------cc----cCCcEEecceEECCC
Q 018327          194 EVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK-----KSSL------KL----ATGANIVGNVLVHES  257 (358)
Q Consensus       194 d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~-----~~~~------~~----~~~~~i~~~~~i~~~  257 (358)
                      |+++.++.++ ++++|.++++|.|+++|++|+++++.++.....     ....      ..    -.++.+.+ +.|+++
T Consensus       243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~  321 (436)
T PLN02241        243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHG  321 (436)
T ss_pred             HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCC
Confidence            8999998874 699999999999999999999999999864311     0000      00    12334444 788899


Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEeeeEECC----------------C---cEECCCcEEeccEEccCCEECCccEE
Q 018327          258 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR----------------G---VRIKKHACISSSIIGWHSTVGQWARV  318 (358)
Q Consensus       258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~----------------~---~~i~~~~~i~~~~i~~~~~ig~~~~i  318 (358)
                      +.|+ ++.|. +|+|+++|.||++|+|.+|+++.                +   +.|+++|.+.+++|+++|+||+++.+
T Consensus       322 ~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i  399 (436)
T PLN02241        322 CFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI  399 (436)
T ss_pred             cEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence            9998 88885 88999999999999999887755                2   38999999999999999999999988


Q ss_pred             cCc
Q 018327          319 ENM  321 (358)
Q Consensus       319 ~~~  321 (358)
                      .++
T Consensus       400 ~~~  402 (436)
T PLN02241        400 INK  402 (436)
T ss_pred             ecc
Confidence            753

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=9.3e-49  Score=362.01  Aligned_cols=330  Identities=22%  Similarity=0.362  Sum_probs=265.5

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-----cCcEEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-----LGIKII   76 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-----~~~~i~   76 (358)
                      |||||||.|+||+|+|..+||+|+|++|+ |||+|+++.|.++|+++++|++++..+++.+|+.+..+.     ..+.+.
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL   80 (361)
T ss_pred             CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence            69999999999999999999999999999 899999999999999999999999889999999752111     112222


Q ss_pred             Ee-----ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEE
Q 018327           77 CS-----QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVV  146 (358)
Q Consensus        77 ~~-----~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  146 (358)
                      ..     .+..+.|++++++.+.+.+....+++|++++||.+++.++.++++.|.+++.++++++     +++..||++.
T Consensus        81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~  160 (361)
T TIGR02091        81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ  160 (361)
T ss_pred             CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence            11     1122479999999999988433334899999999999999999999988777777765     3567899999


Q ss_pred             EcCCCCcEEEEeecCCCCCCC-------eEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcCceEEEeecC
Q 018327          147 MEESTGKVEKFVEKPKLFVGN-------KINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMVLPG  212 (358)
Q Consensus       147 ~d~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~v~~~~~~~  212 (358)
                      .|++ +++..+.|||..+.+.       +.++|+|+|+++++. .+..      ...++..++++.+++++++++|.+++
T Consensus       161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~  239 (361)
T TIGR02091       161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG  239 (361)
T ss_pred             ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence            9876 8999999998655555       899999999999874 4332      23345678999999999999999999


Q ss_pred             eEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEE-ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECC
Q 018327          213 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANI-VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR  291 (358)
Q Consensus       213 ~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~  291 (358)
                      +|.|++|+++|+++++.++.......  ...+...+ .....+.+.+.+++++.+ +++.||++|+|+++ .|.+|+|++
T Consensus       240 ~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~  315 (361)
T TIGR02091       240 YWRDVGTIDSFWEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGI  315 (361)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECC
Confidence            99999999999999999986432211  11111112 112344555666666655 58899999999987 888999999


Q ss_pred             CcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          292 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       292 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +|.|+++|+|.+|++++++.||.++.+.+ |+||++++|++++.+.+
T Consensus       316 ~~~I~~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~  361 (361)
T TIGR02091       316 RVRIGSGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN  361 (361)
T ss_pred             CCEECCCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence            99999999999999999999999999976 99999999999988753

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.4e-46  Score=331.03  Aligned_cols=340  Identities=26%  Similarity=0.369  Sum_probs=290.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||+|+||+.   .+||-|-|++||||++|.|+.....+.+++++|++++.+.+++.+.+.     ..+.+..|
T Consensus         3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q   74 (460)
T COG1207           3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ   74 (460)
T ss_pred             ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence            5799999999999999   899999999999999999999999999999999999999999999863     14677889


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      .++.||+++++++.+.+.+..+.++|+++||+  +....|+++++.|.+.+..+++++   ++|..||.+..+++ ++|.
T Consensus        75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~  153 (460)
T COG1207          75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT  153 (460)
T ss_pred             cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence            99999999999999999544444799999999  344558999999998888888887   99999999999886 8999


Q ss_pred             EEeecCC----CCCCCeEEEEEEEEChhhhhhcc----CC---CCCcccchHHHHHhcCc-eEEEeecC--eEEecCCHH
Q 018327          156 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIE----LR---PTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l~----~~---~~~~~~d~l~~l~~~~~-v~~~~~~~--~~~di~t~~  221 (358)
                      ++.|...    +..-..+++|+|+|..+.|..+.    .+   .+++..|++..+-.++. +.++..+.  ...-+++..
T Consensus       154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~  233 (460)
T COG1207         154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV  233 (460)
T ss_pred             EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence            9998764    23455799999999987665442    22   34566788888766655 77777664  356789999


Q ss_pred             HHHHHHHHHHHhhccc-----CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          222 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                      ++-++.+.+..+....     ..-.-+....|.+.+.|++++.|.++++|.+++.||++|+||++|+|.||.|++++.|.
T Consensus       234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~  313 (460)
T COG1207         234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK  313 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence            9988887776654432     11123677888899999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceecc
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS  349 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~  349 (358)
                      ..++|++|.|+++|.||+++++.|++.++++++||+-+.++++.++.++.+.+
T Consensus       314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~H  366 (460)
T COG1207         314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH  366 (460)
T ss_pred             ecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccc
Confidence            99999999999999999999999999999999999999999999887766544

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=6.9e-46  Score=352.79  Aligned_cols=330  Identities=23%  Similarity=0.374  Sum_probs=272.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   ..||+|+|++|+|||+|+|+++.++|++++++++++..+++.+++.+.     ..+.+..+
T Consensus         4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~   75 (459)
T PRK14355          4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ   75 (459)
T ss_pred             ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence            5799999999999986   789999999999999999999999999999999999888898888752     13445556


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++++++.+++. +++|++++||.  +.+.+++.+++.|.+.+.+++++.   .++..|+.+..|++ +++.
T Consensus        76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~  153 (459)
T PRK14355         76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL  153 (459)
T ss_pred             CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence            67789999999999998532 34899999998  446678999999988777777665   56778898888876 8999


Q ss_pred             EEeecCCC----CCCCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327          156 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~  221 (358)
                      .+.|||..    ..+++.++|+|+|+++.+ +.+..      ....+..|+++.+++++ ++.+|.++++  |.++++|+
T Consensus       154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~  233 (459)
T PRK14355        154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA  233 (459)
T ss_pred             EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence            99987632    134688999999999864 33421      12233468899999887 5999999887  99999999


Q ss_pred             HHHHHHHHHHHhhccc----CcccccCC-cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          222 DYITGLRLYLDSLRKK----SSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~----~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                      +|+++++.++......    ....+.+. +.+.+++.|++++.|++++.|+++++||++|.|+.+|.|.+|+||++|+|+
T Consensus       234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~  313 (459)
T PRK14355        234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVK  313 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEEC
Confidence            9999988666543221    11234555 468899999999999999999999999999999999999999999999999


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcE
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV  340 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~  340 (358)
                      ++|++.+++|++++.||+++.+.+++.|+++++||+++.++...
T Consensus       314 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~  357 (459)
T PRK14355        314 AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV  357 (459)
T ss_pred             CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence            99999999999999999999999999999999988876544433

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=2.1e-44  Score=344.28  Aligned_cols=337  Identities=21%  Similarity=0.276  Sum_probs=266.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +.|||||||.|+||++   .+||+|+|++|+|||+|+|+.|.+++++++++++++..+.+.+++.+..    ..+.+..+
T Consensus         5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~   77 (482)
T PRK14352          5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ   77 (482)
T ss_pred             ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence            4699999999999997   6899999999999999999999999999999999998788888876531    12344556


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.+....+++|++++||. + ...++.++++.|.+.+..++++.   .++..|+.+..|++ ++|.
T Consensus        78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~  156 (482)
T PRK14352         78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT  156 (482)
T ss_pred             CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence            67789999999999988432334799999998 3 44569999999887776666665   67788999888776 8999


Q ss_pred             EEeecCCCC----CCCeEEEEEEEEChhhhhhcc----CC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHH
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNPAVLDRIE----LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDY  223 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~l~----~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy  223 (358)
                      ++.|||...    ..+++++|+|+|+++.|..+.    ..   ...+..|+++++++.+ ++++|.++++|.|++++++|
T Consensus       157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~  236 (482)
T PRK14352        157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV  236 (482)
T ss_pred             EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence            999998743    245789999999999986542    11   2234478999999887 59999999999999999888


Q ss_pred             ------HHHHHHHHHhhcccCccccc-CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          224 ------ITGLRLYLDSLRKKSSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       224 ------~~a~~~~l~~~~~~~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                            ..+++.++..+...-...+. +.+++.++++|++++.|++++.|.++++||++|.|+++|+|.+++||++|.|+
T Consensus       237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~  316 (482)
T PRK14352        237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVV  316 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEe
Confidence                  44555555444333222233 36788899999999999999999999999999999999999999999999987


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCce
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  346 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~  346 (358)
                      . +.+.+++|++++.||+++.+.++++||+++.+|..+.+.++.+.+++.
T Consensus       317 ~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~  365 (482)
T PRK14352        317 R-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTK  365 (482)
T ss_pred             e-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcE
Confidence            4 788888888888888888888778888877777665554444444443

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-46  Score=322.24  Aligned_cols=338  Identities=22%  Similarity=0.382  Sum_probs=262.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhh--ccCcEEEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEA--KLGIKIIC   77 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~--~~~~~i~~   77 (358)
                      |+||++|+|.|+||..++++.||||||++|+|||+|.|+||.++|+++++|++.+ ....++..+.+...  .....+.+
T Consensus        10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i   89 (433)
T KOG1462|consen   10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI   89 (433)
T ss_pred             hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence            5899999999999999999999999999999999999999999999999999997 34556666654111  11112222


Q ss_pred             e-ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe--------------cCCCCe
Q 018327           78 S-QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--------------DEPSKY  142 (358)
Q Consensus        78 ~-~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~  142 (358)
                      . ..+...|++++++.....+  ..+ +||++.||.+++.++..+++.|++.++..++++              +..+..
T Consensus        90 p~~~~~d~gtadsLr~Iy~ki--kS~-DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~  166 (433)
T KOG1462|consen   90 PTDDNSDFGTADSLRYIYSKI--KSE-DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR  166 (433)
T ss_pred             ecccccccCCHHHHhhhhhhh--ccC-CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence            1 1233569999999999999  444 999999999999999999999998776655554              222344


Q ss_pred             eeEEEcCCCCcEEEEeec-----------------CC-CCCCCeEEEEEEEEChhhhhhccC--CCCCcccchHHHHHhc
Q 018327          143 GVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVFPKIALE  202 (358)
Q Consensus       143 ~~~~~d~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~l~~l~~--~~~~~~~d~l~~l~~~  202 (358)
                      .++..+++|+|+......                 |+ ...+++.++++|+|+++++++|.+  ...+|+.+++|+++++
T Consensus       167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk  246 (433)
T KOG1462|consen  167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK  246 (433)
T ss_pred             ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence            566667776776554321                 11 235678899999999999999974  4567888999888765


Q ss_pred             Cc---------------------------------eEEEeec--CeEEecCCHHHHHHHHH--HHHHhhcccC---cccc
Q 018327          203 GK---------------------------------LFAMVLP--GFWMDIGQPRDYITGLR--LYLDSLRKKS---SLKL  242 (358)
Q Consensus       203 ~~---------------------------------v~~~~~~--~~~~di~t~~dy~~a~~--~~l~~~~~~~---~~~~  242 (358)
                      +.                                 .++|..+  .-+.+++|.-.|+++|+  .+. ++.+..   ....
T Consensus       247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~-~l~~e~~~~k~~~  325 (433)
T KOG1462|consen  247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLK-KLCSEAKFVKNYV  325 (433)
T ss_pred             hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHH-Hhccccccccchh
Confidence            43                                 2233332  35779999999999994  333 332211   1112


Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCcc
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  322 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  322 (358)
                      ...+.+.-.+++++++.|++++.| ..|+||++|.||+.++|.+|++++|+.||+++.|++|+||++++||+++.+.+ |
T Consensus       326 ~~~~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-C  403 (433)
T KOG1462|consen  326 KKVALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-C  403 (433)
T ss_pred             hheeccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-e
Confidence            233556678888999999988888 49999999999999999999999999999999999999999999999999999 9


Q ss_pred             EECCCcEECCceEEcCcEEccC
Q 018327          323 ILGEDVHVCDEIYSNGGVVLPH  344 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~~~~v~~~  344 (358)
                      +||.+-+|.+.....|.++..+
T Consensus       404 ~Ig~~yvVeak~~~~~ev~~~~  425 (433)
T KOG1462|consen  404 IIGPGYVVEAKGKHGGEVLVSN  425 (433)
T ss_pred             EecCCcEEcccccccccEeecc
Confidence            9999999999988888777554

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.9e-44  Score=343.07  Aligned_cols=331  Identities=21%  Similarity=0.328  Sum_probs=262.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+|++|.++|++++++++++..+.+++++..    .+  +.++.+
T Consensus         8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----~~--i~~v~~   78 (481)
T PRK14358          8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG----SG--VAFARQ   78 (481)
T ss_pred             ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc----CC--cEEecC
Confidence            6899999999999997   68999999999999999999999999999999999988888888763    13  444556


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.+.... ++|++++||.  +.+.++++++++|.++++++++++   +++..||++..|++ ++|.
T Consensus        79 ~~~~Gt~~al~~~~~~l~~~~-~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~  156 (481)
T PRK14358         79 EQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE  156 (481)
T ss_pred             CCcCCcHHHHHHHHHHhhCCC-CcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence            667899999999998884323 3799999998  445679999999988888887776   66788999999986 8999


Q ss_pred             EEeecCCCC----CCCeEEEEEEEECh---hhhhhccCC---CCCcccchHHHHHhcCc-eEEEeecCeEEecCCHHHHH
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNP---AVLDRIELR---PTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYI  224 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~---~~l~~l~~~---~~~~~~d~l~~l~~~~~-v~~~~~~~~~~di~t~~dy~  224 (358)
                      .|.|||...    .+++.++|+|+|++   ++++++...   ...+..|+++.+++++. +++|...++|..++.-.+|+
T Consensus       157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~  236 (481)
T PRK14358        157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG  236 (481)
T ss_pred             EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence            999998643    24578999999994   455565432   12334688999988874 88998888777776666554


Q ss_pred             HHHHH-HHHhhcc-----cCcccccCCc-EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327          225 TGLRL-YLDSLRK-----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  297 (358)
Q Consensus       225 ~a~~~-~l~~~~~-----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~  297 (358)
                      .+++. ++.....     .......+.+ .+.++++||+++.|+++++|.+++.||++|.|+++|.|.+|+|+++|.|++
T Consensus       237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~  316 (481)
T PRK14358        237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKP  316 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEee
Confidence            44432 3321111     1111223333 357889999999999999999899999999999999999999999999999


Q ss_pred             CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEc
Q 018327          298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  342 (358)
Q Consensus       298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~  342 (358)
                      +++|.+++||+++.||+++.+..+++||+++.|++++.++++.+.
T Consensus       317 ~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~  361 (481)
T PRK14358        317 HSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD  361 (481)
T ss_pred             cceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence            999999999999999999999888999999999997776554443

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.5e-44  Score=341.58  Aligned_cols=337  Identities=20%  Similarity=0.286  Sum_probs=268.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.|||||||+|+||++   .+||+|+|++|+|||+|++++|...+++++++++++..+.+.+++.+.    ++  .++.+
T Consensus         6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~--~~v~~   76 (456)
T PRK14356          6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DA--RFVLQ   76 (456)
T ss_pred             eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----Cc--eEEEc
Confidence            4699999999999984   799999999999999999999999999999999999878777776531    23  33445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.+++...+++++++||. + ...+++.+++.+.  +.+++++.   .++..||.+.. ++ ++|.
T Consensus        77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~  152 (456)
T PRK14356         77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA  152 (456)
T ss_pred             CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence            66789999999999988543335899999998 3 3455888888775  44555555   67788998876 34 8999


Q ss_pred             EEeecCCC------CCCCeEEEEEEEEChhhhhhccC-------CCCCcccchHHHHHhcC-ceEEEeecC--eEEecCC
Q 018327          156 KFVEKPKL------FVGNKINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQ  219 (358)
Q Consensus       156 ~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~-~v~~~~~~~--~~~di~t  219 (358)
                      .+.|||..      +.+.+.++|+|+|++++++.+.+       ....+..++++.+.+.+ ++.++...+  .|.+++|
T Consensus       153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t  232 (456)
T PRK14356        153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT  232 (456)
T ss_pred             EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence            99998752      24568899999999998764421       12233467888887665 488888765  6799999


Q ss_pred             HHHHHHHHHHHHHhhccc---Ccccc--cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcE
Q 018327          220 PRDYITGLRLYLDSLRKK---SSLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR  294 (358)
Q Consensus       220 ~~dy~~a~~~~l~~~~~~---~~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~  294 (358)
                      |+||.+++..+..+....   ....+  .+.+.+++++.|++++.|.+++.|.+++.||++|.|+++|.|.+|+|+++|.
T Consensus       233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~  312 (456)
T PRK14356        233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGAT  312 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCE
Confidence            999999987766543321   01111  3566777888888888888888888899999999999999999999999999


Q ss_pred             ECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccC
Q 018327          295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS  350 (358)
Q Consensus       295 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~  350 (358)
                      |+++|.|.+++||++|.||++++|.+++++|++++||+++.++++.+.+++.+.+.
T Consensus       313 I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~  368 (456)
T PRK14356        313 IHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHL  368 (456)
T ss_pred             EeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEeccc
Confidence            99999999999999999999999998899999999999988887777777665543

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=1.3e-43  Score=337.70  Aligned_cols=330  Identities=24%  Similarity=0.367  Sum_probs=257.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.++    ++.+  ..+
T Consensus         1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~--~~~   71 (451)
T TIGR01173         1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNW--VLQ   71 (451)
T ss_pred             CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEE--EEc
Confidence            8999999999999997   799999999999999999999999999999999999888888888763    3333  345


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++++++.+.  .+++|++++||.  +...+++.+++.|.+.  ..++++   +++..|+.+..|++ +++.
T Consensus        72 ~~~~G~~~ai~~a~~~l~--~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~  146 (451)
T TIGR01173        72 AEQLGTGHAVLQALPFLP--DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT  146 (451)
T ss_pred             CCCCchHHHHHHHHHhcC--CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence            556799999999999984  234899999998  3455689999888664  244444   56677998888876 8999


Q ss_pred             EEeecCCCC----CCCeEEEEEEEEChhhhhh-ccC---C---CCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~  221 (358)
                      .+.|||...    .....++|+|+|+++.|.. +..   .   ...+..++++.+++.+ .++.|..+++  |.++++|+
T Consensus       147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~  226 (451)
T TIGR01173       147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL  226 (451)
T ss_pred             EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence            999987532    2347899999999998543 322   1   1223358888888886 5889988887  89999999


Q ss_pred             HHHHHHHHHHHhhccc-----CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          222 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                      ++.+++..+..+....     .....++...+.+++.|++++.|+++++|.++++||++|.|+++|.|.+++|+++|.|+
T Consensus       227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~  306 (451)
T TIGR01173       227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIK  306 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEe
Confidence            9988876554322211     00112345567788888888888888888888899999999999988889999999999


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  344 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~  344 (358)
                      ++|.|.+++|+++|.||+++.|.++++|+++++|++++.+.++.++.+
T Consensus       307 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~  354 (451)
T TIGR01173       307 AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG  354 (451)
T ss_pred             eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence            899998888888888888888887788888888887766554444443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.8e-44  Score=326.63  Aligned_cols=338  Identities=20%  Similarity=0.322  Sum_probs=264.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh--hhhccCcEEEEe
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~--~~~~~~~~i~~~   78 (358)
                      ++||+||.-+.+||+|+|...|++|||++|.|||+|+|+||.++|++.++|+|+.+..++++|+++  |...+...+..+
T Consensus        25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti  104 (673)
T KOG1461|consen   25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI  104 (673)
T ss_pred             eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence            489999999999999999999999999999999999999999999999999999999999999996  554444334333


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhc-----CCeeEEEecCC-----CCeeeEEEc
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVDEP-----SKYGVVVME  148 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~d  148 (358)
                      ......+.+++++...+.--  ...+|++++||++++.+|.+++++|+..     +.-+|++++..     ...-.+.+|
T Consensus       105 ~s~~~~S~GDamR~id~k~l--itgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd  182 (673)
T KOG1461|consen  105 CSGESRSVGDAMRDIDEKQL--ITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVD  182 (673)
T ss_pred             cCCCcCcHHHHHHHHHhcce--eecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEc
Confidence            33345666777776654321  1239999999999999999999999553     23356666222     333467788


Q ss_pred             CCCCcEEEEee----cCC--------------CCCCCeEEEEEEEEChhhhhhccCCCCC-cccchHHHHHh----cCce
Q 018327          149 ESTGKVEKFVE----KPK--------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IEKEVFPKIAL----EGKL  205 (358)
Q Consensus       149 ~~~~~v~~~~e----k~~--------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~~d~l~~l~~----~~~v  205 (358)
                      ..|.++..+.+    +..              ..+.++.++++-+|+++++..|.+++.+ ...||...++.    ..++
T Consensus       183 ~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI  262 (673)
T KOG1461|consen  183 SRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKI  262 (673)
T ss_pred             CCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeE
Confidence            88889999875    110              1246788999999999999999876543 33566655543    3468


Q ss_pred             EEEeecC--eEEecCCHHHHHHHHHHHHHhhcccCcc-----------------------cccCCcEEecceEECCCCEE
Q 018327          206 FAMVLPG--FWMDIGQPRDYITGLRLYLDSLRKKSSL-----------------------KLATGANIVGNVLVHESAQI  260 (358)
Q Consensus       206 ~~~~~~~--~~~di~t~~dy~~a~~~~l~~~~~~~~~-----------------------~~~~~~~i~~~~~i~~~~~i  260 (358)
                      +.+..+.  |...+.+...|...+++++.+|....-+                       .+...+.++.++.||.++.|
T Consensus       263 ~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~I  342 (673)
T KOG1461|consen  263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKI  342 (673)
T ss_pred             EEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccc
Confidence            8888775  8899999999999999999998752211                       12345666678888888888


Q ss_pred             CCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc-Cc
Q 018327          261 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GG  339 (358)
Q Consensus       261 ~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~  339 (358)
                      |.+++|. ||+||.||.||.||+|.+|.||++|+||+||.|.+++|+++++|+.++.+.+||++|.++++|++..+. ++
T Consensus       343 g~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns  421 (673)
T KOG1461|consen  343 GSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNS  421 (673)
T ss_pred             cCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccccccc
Confidence            8888885 889999999999999999999999999999999999999999999998888888888888888887774 43


Q ss_pred             EE
Q 018327          340 VV  341 (358)
Q Consensus       340 ~v  341 (358)
                      .+
T Consensus       422 ~~  423 (673)
T KOG1461|consen  422 KV  423 (673)
T ss_pred             cc
Confidence            33

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.5e-44  Score=298.99  Aligned_cols=227  Identities=31%  Similarity=0.549  Sum_probs=204.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      ||+||||||.|+||+|+|...||+|+|+.+||||.|.|+.|+.+|+++|.||+++ +.+.+++++.+ .++|++++.|..
T Consensus         1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~   79 (286)
T COG1209           1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV   79 (286)
T ss_pred             CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence            9999999999999999999999999999999999999999999999999999999 56677777776 678899999999


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      |.++.|.++|+..+.+++  +++ +|++..||.++..++.++++.+.++.+++++++   ++|++||++++|++ +++..
T Consensus        80 Q~~p~GlA~Av~~a~~fv--~~~-~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~  155 (286)
T COG1209          80 QPEPDGLAHAVLIAEDFV--GDD-DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG  155 (286)
T ss_pred             cCCCCcHHHHHHHHHhhc--CCC-ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence            999999999999999999  544 999999999887799999999998888888887   99999999999987 79999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcCceE-EEeecCeEEecCCHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEGKLF-AMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~~v~-~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      +.|||..+.|+++.+|+|+|++++|+.+..-.     ..-..|.++.++++|... .....|.|.|.+|++++++|+...
T Consensus       156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i  235 (286)
T COG1209         156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV  235 (286)
T ss_pred             eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence            99999999999999999999999999875432     222368899999998854 445667999999999999999888


Q ss_pred             HH
Q 018327          231 LD  232 (358)
Q Consensus       231 l~  232 (358)
                      +.
T Consensus       236 ~~  237 (286)
T COG1209         236 RT  237 (286)
T ss_pred             HH
Confidence            76

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.8e-42  Score=328.90  Aligned_cols=346  Identities=19%  Similarity=0.273  Sum_probs=247.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +.|||||||.|+||++   .+||+|+|++|||||+|++++|..++++++++++++..+++.+++.++    +..+.+..+
T Consensus         6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~   78 (446)
T PRK14353          6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ   78 (446)
T ss_pred             ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence            4699999999999985   689999999999999999999999999999999999888888887653    222333345


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.+.... ++|++++||. +.. ..++.+++.+ +.+.+++++.   .++..|+.+..+ + ++|.
T Consensus        79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~~-~-g~v~  154 (446)
T PRK14353         79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIVK-G-GRLV  154 (446)
T ss_pred             CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEEC-C-CeEE
Confidence            567799999999998884323 4899999998 443 4478888744 4455666555   566788887763 3 8999


Q ss_pred             EEeecCCCC----CCCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcCc-eEEEeec-CeEEecCCHHH
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGK-LFAMVLP-GFWMDIGQPRD  222 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~-v~~~~~~-~~~~di~t~~d  222 (358)
                      .+.|||...    .+.+.++|+|.|+++.| +.+..      ....+..++++.+++.+. ++.+..+ +.|.+++||+|
T Consensus       155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d  234 (446)
T PRK14353        155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE  234 (446)
T ss_pred             EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence            999987531    23678999999998765 33321      122334577888887765 8888876 46999999999


Q ss_pred             HHHHHHHHHHhh-----ccc------------CcccccCCcEEecceEECCCCEECCCcEECC-----CcEECCCCEECC
Q 018327          223 YITGLRLYLDSL-----RKK------------SSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVES  280 (358)
Q Consensus       223 y~~a~~~~l~~~-----~~~------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~ig~  280 (358)
                      |.+++..+..+.     ...            ....+++++.+.++++|++++.|+++|.|++     +++||++|+||+
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~  314 (446)
T PRK14353        235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGP  314 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECC
Confidence            999987554331     000            1223455556666666666666666666654     577888888888


Q ss_pred             CcEEe-eeEECCCcEECCCcEEecc-----------------EEccCCEECCccEE-------cCccEECCCcEECCc--
Q 018327          281 GVRLS-RCTVMRGVRIKKHACISSS-----------------IIGWHSTVGQWARV-------ENMTILGEDVHVCDE--  333 (358)
Q Consensus       281 ~~~i~-~~~i~~~~~i~~~~~i~~~-----------------~i~~~~~ig~~~~i-------~~~~~i~~~~~i~~~--  333 (358)
                      ++.|. +++||++|.|+++|.+.++                 +||++|.||.++.+       ..+++||+++.||++  
T Consensus       315 ~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~  394 (446)
T PRK14353        315 YARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA  394 (446)
T ss_pred             CeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence            88887 7888888888888776543                 45555566554332       113444444444444  


Q ss_pred             ----eEEc-CcEEccCceeccCCCCCccc
Q 018327          334 ----IYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       334 ----~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                          +.|+ ++.+++++.|.+++|+++++
T Consensus       395 i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~  423 (446)
T PRK14353        395 LVAPVTIGDGAYIASGSVITEDVPDDALA  423 (446)
T ss_pred             EeCCCEECCCCEECCCCEECccCCCCCEE
Confidence                4453 67778899999999998776

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.2e-42  Score=325.98  Aligned_cols=341  Identities=19%  Similarity=0.293  Sum_probs=235.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+++.+.++ +++++|++++..+++.+++.+..  .++.+.+...
T Consensus         3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~   76 (430)
T PRK14359          3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL   76 (430)
T ss_pred             ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence            4699999999999997   7999999999999999999999987 78999999999899999887631  2344444333


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ....|++++++++..    . .++|++++||..+.  ....++.+.+.++++++.+   +++..|+.+..| + +++..+
T Consensus        77 ~~~~gt~~al~~~~~----~-~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i  147 (430)
T PRK14359         77 ENYPGTGGALMGIEP----K-HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI  147 (430)
T ss_pred             ccCCCcHHHHhhccc----C-CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence            445788888876321    2 24899999999432  2344555555566666655   567788887765 3 899999


Q ss_pred             eecCCCC----CCCeEEEEEEEEChhhhhhccCC-------CCCcccchHHHHHhcC-ceEEEeec-CeEEecCCHHHHH
Q 018327          158 VEKPKLF----VGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEG-KLFAMVLP-GFWMDIGQPRDYI  224 (358)
Q Consensus       158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~-~v~~~~~~-~~~~di~t~~dy~  224 (358)
                      .|+|...    ...+.++|+|+|++++|+.+...       ...+..|+++.+++.+ ++..+..+ ++|.|+++|+||.
T Consensus       148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~  227 (430)
T PRK14359        148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA  227 (430)
T ss_pred             EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence            9887522    24578999999999999865321       2234467888888774 58888886 5899999999999


Q ss_pred             HHHHHHHHhhcccC-----------cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEE---------------
Q 018327          225 TGLRLYLDSLRKKS-----------SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV---------------  278 (358)
Q Consensus       225 ~a~~~~l~~~~~~~-----------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i---------------  278 (358)
                      +++..+..+.....           ....++++.+.+++.+++++.|++++.|+ +++||++|.|               
T Consensus       228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~  306 (430)
T PRK14359        228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAH  306 (430)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCE
Confidence            99876655433211           22245667777777777777776665554 4444444444               


Q ss_pred             -CCCcEEeeeEECCCc----------EECCCcEEeccEEccCCEECCccEEcC-------ccEECCCcEECCce------
Q 018327          279 -ESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEI------  334 (358)
Q Consensus       279 -g~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~------  334 (358)
                       ++++.|.+|.||++|          +|++.+.|.+|+||++|.||.++.+.+       +++||+++.||.++      
T Consensus       307 i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~  386 (430)
T PRK14359        307 IRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPV  386 (430)
T ss_pred             ECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCc
Confidence             444444444444444          444444555566666667776644332       14455555555554      


Q ss_pred             EEc-CcEEccCceeccCCCCCccc
Q 018327          335 YSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       335 ~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      .|+ ++.+++++.|.+|+|+++++
T Consensus       387 ~ig~~~~i~~g~~v~~~v~~~~~~  410 (430)
T PRK14359        387 NIEDNVLIAAGSTVTKDVPKGSLA  410 (430)
T ss_pred             EECCCCEECCCCEEccccCCCcEE
Confidence            453 57789999999999998775

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.2e-42  Score=327.58  Aligned_cols=317  Identities=23%  Similarity=0.346  Sum_probs=213.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|++++|.+++++++++++++..+.+++++...      .+.+..+
T Consensus         6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~   76 (456)
T PRK09451          6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQ   76 (456)
T ss_pred             ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEEC
Confidence            5799999999999985   789999999999999999999999999999999998878888887641      2334445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.+.  .+++|++++||.  +.+.++.++++.|.+.+  +.+++   +++..||++. +++ ++|.
T Consensus        77 ~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~-~~~-g~V~  150 (456)
T PRK09451         77 AEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRIT-REN-GKVV  150 (456)
T ss_pred             CCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEE-ecC-CeEE
Confidence            667899999999998884  234899999998  45567899988875443  23333   7778899975 444 8999


Q ss_pred             EEeecCCCC----CCCeEEEEEEEEChhhhhh-cc---CC---CCCcccchHHHHHhcC-ceEEEe------ecCe--EE
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IE---LR---PTSIEKEVFPKIALEG-KLFAMV------LPGF--WM  215 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~---~~---~~~~~~d~l~~l~~~~-~v~~~~------~~~~--~~  215 (358)
                      +|.|||...    .+++.++|+|+|+++.|.. +.   ..   ...+..|+++.+++++ ++.+|.      +.|+  |.
T Consensus       151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~  230 (456)
T PRK09451        151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL  230 (456)
T ss_pred             EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence            999998632    2468999999999987753 32   11   2234469999999886 578875      3455  67


Q ss_pred             ecCCHHHHHHHHHH--HHHhhcccCcccccCC-cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCC
Q 018327          216 DIGQPRDYITGLRL--YLDSLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG  292 (358)
Q Consensus       216 di~t~~dy~~a~~~--~l~~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~  292 (358)
                      |++++++|+++++.  ++..-    ...+++. ..+.++..+++++.|++++.|.++++||++|.|+++|.|.+|+|+++
T Consensus       231 di~~~~~y~~~~~~~~~l~~~----~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~  306 (456)
T PRK09451        231 QLARLERVYQAEQAEKLLLAG----VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDD  306 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC----CEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCC
Confidence            89999999998742  22210    0001111 11233444555555555555544455555555555555555555555


Q ss_pred             cEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          293 VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       293 ~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      |.|++++.|.+++|++++.||+++.|.+++.+++++.||+++.+
T Consensus       307 ~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i  350 (456)
T PRK09451        307 CEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM  350 (456)
T ss_pred             CEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence            55555555555555555555555555444444444444444433

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=324.63  Aligned_cols=334  Identities=24%  Similarity=0.405  Sum_probs=263.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|+|||+|+|++|.+++++++++++++..+++.+++.+     +.  .+..+
T Consensus         3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~--~~~~~   72 (458)
T PRK14354          3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RS--EFALQ   72 (458)
T ss_pred             ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----Cc--EEEEc
Confidence            4799999999999986   79999999999999999999999999999999999988888888764     12  23345


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|+++++++++++++.. +++++++.||.  +.+.+++++++.|.+.+.++++++   +++..|+.+..|++ ++|.
T Consensus        73 ~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~  150 (458)
T PRK14354         73 EEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE  150 (458)
T ss_pred             CCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence            56779999999999988432 24799999997  445668999999987777777665   66777888888876 8999


Q ss_pred             EEeecCCC----CCCCeEEEEEEEEChhhh-hhccCC------CCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327          156 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~  221 (358)
                      .+.|||..    ....+.++|+|+|+++.+ +.+...      ......|+++.+++.+ +++++..+++  |.++++++
T Consensus       151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~  230 (458)
T PRK14354        151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV  230 (458)
T ss_pred             EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence            99998742    234678999999998744 444211      1222357788888765 5889988865  56778999


Q ss_pred             HHHHHHHHHHHhhcccC----cccccC-CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          222 DYITGLRLYLDSLRKKS----SLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~~----~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                      ||.+++..+..+.....    ...+.+ .+.+++++.|++++.|+++++|.+++.||++|.|++++.|.+++|+++|.|+
T Consensus       231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~  310 (458)
T PRK14354        231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT  310 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE
Confidence            99999876654433211    122434 4578889999999999999999889999999999999999999999999998


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                       ++.+.+++||++|.||+++.|..+++||++++|++++.+.++.+.++..+
T Consensus       311 -~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i  360 (458)
T PRK14354        311 -NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKV  360 (458)
T ss_pred             -EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEe
Confidence             47888899999999999999997799999999988888766666555544

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.8e-41  Score=317.52  Aligned_cols=320  Identities=24%  Similarity=0.347  Sum_probs=241.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++   .+||+|+|++|||||+|+|+++.+.+ ++++|++++..+.+.+++.+     ++.  +..+
T Consensus         1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~--~~~~   69 (448)
T PRK14357          1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVK--IFLQ   69 (448)
T ss_pred             CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccE--EEec
Confidence            8999999999999986   79999999999999999999999975 89999999887777777654     233  3445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++++++++..  +++|++++||.  +.+.+++++++.|.+++.++++++   +++..||++..| + +++ 
T Consensus        70 ~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v-  144 (448)
T PRK14357         70 EEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY-  144 (448)
T ss_pred             CCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence            6678999999999999842  34899999997  556678999999988888888776   677889998877 4 788 


Q ss_pred             EEeecCCCC----CCCeEEEEEEEEChhhhhh-ccC---C---CCCcccchHHHHHhcCceEEEeecCe--EEecCCHHH
Q 018327          156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD  222 (358)
Q Consensus       156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~~v~~~~~~~~--~~di~t~~d  222 (358)
                      .+.|||...    ...+.++|+|+|+++.|.. +..   .   ...+..|+++.+   .++..|...++  |.+++++++
T Consensus       145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~  221 (448)
T PRK14357        145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ  221 (448)
T ss_pred             EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence            777866432    1358999999999998654 331   1   112234666666   24778888887  667779999


Q ss_pred             HHHHHHHHHHhh----cccCcccccC-CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327          223 YITGLRLYLDSL----RKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  297 (358)
Q Consensus       223 y~~a~~~~l~~~----~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~  297 (358)
                      +..+...+....    .......+.+ .+.+++++.|++++.|++++.|++++.||++|+|+++|.|.+|+|+++|.|. 
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-  300 (448)
T PRK14357        222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-  300 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-
Confidence            988765553321    1111122333 3477888888888888888888888888888888888888888888888884 


Q ss_pred             CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcE
Q 018327          298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV  340 (358)
Q Consensus       298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~  340 (358)
                      .+.+.+++|++++.||+++.|..+++||++++|++++.+.++.
T Consensus       301 ~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~  343 (448)
T PRK14357        301 RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKST  343 (448)
T ss_pred             eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccE
Confidence            4667777777777777777776667777777777665554333

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.6e-40  Score=312.91  Aligned_cols=334  Identities=18%  Similarity=0.295  Sum_probs=257.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||++   .+||+|+|++|+|||+|+|++|.+++++++++++++..+.+.+++.+.   .+  +.++.+
T Consensus         2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~~--i~~v~~   73 (450)
T PRK14360          2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---PG--LEFVEQ   73 (450)
T ss_pred             ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---CC--eEEEEe
Confidence            5789999999999986   789999999999999999999999999999999999878888887652   12  333445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++.+++.++... +++++++||.  +.+.+++.+++.|.+.+.+.+++.   +++..||.+..|++ ++|.
T Consensus        74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~  151 (450)
T PRK14360         74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE  151 (450)
T ss_pred             CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence            566789999999998885323 3799999998  455679999999988877777665   67778999988876 8999


Q ss_pred             EEeecCC----CCCCCeEEEEEEEEChhhhhhccCC-------CCCcccchHHHHHhcCceEEEeecCe--EEecCCHHH
Q 018327          156 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD  222 (358)
Q Consensus       156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~~v~~~~~~~~--~~di~t~~d  222 (358)
                      ++.|||.    ...+++.++|+|+|+++.|..+.+.       ...+..|.++.+.+   +..+...++  +..+++++|
T Consensus       152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d  228 (450)
T PRK14360        152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ  228 (450)
T ss_pred             EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence            9999975    2356789999999999877654321       11222455666532   445555554  566999999


Q ss_pred             HHHHHHHHHHhhcc----cCcccccCCc-EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327          223 YITGLRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  297 (358)
Q Consensus       223 y~~a~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~  297 (358)
                      +..+...+......    .....+.+.+ .+.+++.+++++.|++++.|.+++.||++|.|++++.|.+|.|+++|.|+ 
T Consensus       229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-  307 (450)
T PRK14360        229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-  307 (450)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-
Confidence            99887765443321    1222345553 57888999999999999999889999999999999999988888888884 


Q ss_pred             CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      .+.+.+++|+++|.||.++.|.++++||++++|++++.+.++.+..+..|.
T Consensus       308 ~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~  358 (450)
T PRK14360        308 YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVN  358 (450)
T ss_pred             eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEec
Confidence            577788888888888888888877888888888888877665555544443

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=100.00  E-value=2.5e-40  Score=287.36  Aligned_cols=230  Identities=74%  Similarity=1.244  Sum_probs=206.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+|+.++.+..++.+.+..+
T Consensus         1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (233)
T cd06425           1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE   80 (233)
T ss_pred             CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence            89999999999999999999999999999999999999999999999999999999899999999875566778777667


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ..+.|++++++.+.+.+... +++|++++||.+++.++.++++.|.++++++++++   +++..||++..|+++++|..+
T Consensus        81 ~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~  159 (233)
T cd06425          81 TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF  159 (233)
T ss_pred             CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence            77889999999999998532 24899999999999999999999999888888887   566789999998733899999


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      .|||..+.+++.++|+|+|++++|+.+.....+...++++.+++++++.+|.++++|.|++||++|+++++.+|
T Consensus       160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence            99998777889999999999999999877666677899999999999999999999999999999999988664

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=100.00  E-value=1.2e-38  Score=283.14  Aligned_cols=226  Identities=26%  Similarity=0.454  Sum_probs=192.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----------   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|||+|+|+++++..+|+++|++++++..+.+.+|+.....           
T Consensus         4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~   83 (297)
T TIGR01105         4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR   83 (297)
T ss_pred             eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence            899999999999999999999999999999999999999999999999999999999999999864110           


Q ss_pred             ----------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327           70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (358)
Q Consensus        70 ----------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~  131 (358)
                                .+++++.++.|.++.|++++++++++++  .++ +|++++||.+++        .+++++++.|.+.++.
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l--~~~-~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~  160 (297)
T TIGR01105        84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVV--GDN-PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS  160 (297)
T ss_pred             hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHh--CCC-CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence                      2467788888999999999999999999  433 899999999886        4789999998776665


Q ss_pred             eEEEe---cCCCCeeeEEEc----CCCCc---EEEEeecCCCC---CCCeEEEEEEEEChhhhhhccCCC-----CCccc
Q 018327          132 ASIMV---DEPSKYGVVVME----ESTGK---VEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRP-----TSIEK  193 (358)
Q Consensus       132 ~~~~~---~~~~~~~~~~~d----~~~~~---v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~  193 (358)
                      ++++.   +++..||++..|    ++ ++   |..+.|||..+   .++++++|+|+|++++|+.+....     .....
T Consensus       161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt  239 (297)
T TIGR01105       161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT  239 (297)
T ss_pred             EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence            54444   478999999984    33 54   58899998644   478999999999999999885421     12235


Q ss_pred             chHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          194 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       194 d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      |+++.++++++++++.++|+|.|+++|++|++++..+
T Consensus       240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence            8899999999999999999999999999999998765

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=100.00  E-value=2e-38  Score=279.34  Aligned_cols=227  Identities=42%  Similarity=0.720  Sum_probs=198.1

Q ss_pred             EEEEecC--CccccCcCCCCCCCcccccCCcchHHHHHHHHHH-CCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            3 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         3 avIla~G--~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |||||||  .|+||+|+|..+||+|+|++|+|||+|+|+++.+ +|+++++|++++..+.+.+|+.+..+..++.+.+..
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~   80 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ   80 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence            6899999  8999999999999999999999999999999999 699999999999889999999875445677777777


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCCCcE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKV  154 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~v  154 (358)
                      +.++.|++++++.+++.+....+++|++++||.+++.+++++++.|.++++++++++     +++..||++..|+++++|
T Consensus        81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v  160 (257)
T cd06428          81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV  160 (257)
T ss_pred             CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence            777889999999999998543334899999999999999999999999888888776     346789999988333899


Q ss_pred             EEEeecCCCCCCCeEEEEEEEEChhhhhhccCC---------------------CCCcccchHHHHHhcCceEEEeecCe
Q 018327          155 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEVFPKIALEGKLFAMVLPGF  213 (358)
Q Consensus       155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---------------------~~~~~~d~l~~l~~~~~v~~~~~~~~  213 (358)
                      ..+.|||..+.++++++|+|+|++++|+.+.+.                     ..++..|+++.+++++++++|.++|+
T Consensus       161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~  240 (257)
T cd06428         161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF  240 (257)
T ss_pred             EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCe
Confidence            999999987788899999999999999877521                     12344689999999999999999999


Q ss_pred             EEecCCHHHHHHHHHH
Q 018327          214 WMDIGQPRDYITGLRL  229 (358)
Q Consensus       214 ~~di~t~~dy~~a~~~  229 (358)
                      |.|++|+++|+++|+.
T Consensus       241 w~dig~~~~~~~a~~~  256 (257)
T cd06428         241 WSQIKTAGSAIYANRL  256 (257)
T ss_pred             eecCCCHHHHHhHhhc
Confidence            9999999999999875

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=100.00  E-value=1.6e-37  Score=272.72  Aligned_cols=229  Identities=40%  Similarity=0.732  Sum_probs=196.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEec-cChHHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      ||||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++..+|++++++|+. +..+.+.+|+++. ..+++++.++.
T Consensus         1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~i~   79 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEYIV   79 (248)
T ss_dssp             EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEEEE
T ss_pred             CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-ccccccceeee
Confidence            799999999999999999999999999999 99999999999999999655555 6778899999973 44567888888


Q ss_pred             cCCcCCCchHHHHHHhhccCCC-CCcEEEEeCCeeeccCHHHHHHHHHhcCCee--EEEe---cCCCCeeeEEEcCCCCc
Q 018327           80 ETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGGEA--SIMV---DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~-~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~d~~~~~  153 (358)
                      +..+.|++++++++.+.+.... +++|++++||++++.++.++++.|.+++.++  ++..   ++++.||++..|++ ++
T Consensus        80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~  158 (248)
T PF00483_consen   80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR  158 (248)
T ss_dssp             ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred             cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence            8888999999999999995432 2259999999999999999999999988743  3333   67889999999986 89


Q ss_pred             EEEEeecCCCCC-CCeEEEEEEEEChhhhhhcc------CCCCCcccchHHHHHhcCc-eEEEeecC--eEEecCCHHHH
Q 018327          154 VEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE------LRPTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPRDY  223 (358)
Q Consensus       154 v~~~~ek~~~~~-~~~~~~Giy~~~~~~l~~l~------~~~~~~~~d~l~~l~~~~~-v~~~~~~~--~~~di~t~~dy  223 (358)
                      |..+.|||.... +.++++|+|+|++++|+.+.      .....+..|+++.+++++. +.++..++  +|.|+++|++|
T Consensus       159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~  238 (248)
T PF00483_consen  159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY  238 (248)
T ss_dssp             EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred             EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence            999999999766 88999999999999999883      2344566789999999986 55778888  79999999999


Q ss_pred             HHHHHHHHH
Q 018327          224 ITGLRLYLD  232 (358)
Q Consensus       224 ~~a~~~~l~  232 (358)
                      ++|++.+++
T Consensus       239 ~~a~~~~~~  247 (248)
T PF00483_consen  239 LEANMDLLN  247 (248)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999998764

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>PRK10122 GalU regulator GalF; Provisional

Probab=100.00  E-value=5.6e-37  Score=273.26  Aligned_cols=226  Identities=26%  Similarity=0.471  Sum_probs=193.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hh---------h-
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE---------A-   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~---------~-   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|||+|+|+++++.++|+++|+|++++..+.+.+|+.. |.         + 
T Consensus         4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~   83 (297)
T PRK10122          4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR   83 (297)
T ss_pred             eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence            799999999999999999999999999999999999999999999999999999999999999963 10         0 


Q ss_pred             ----------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327           70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (358)
Q Consensus        70 ----------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~  131 (358)
                                .+++++.+..|.++.|++++++++++++  ..+ +|+++.||.++.        .+++++++.|.+.+.+
T Consensus        84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l--~~~-~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~  160 (297)
T PRK10122         84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI--GDN-PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS  160 (297)
T ss_pred             hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHc--CCC-CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence                      1356788888888999999999999999  433 899999999875        4799999999887766


Q ss_pred             eEEEe---cCCCCeeeEEEc----CCCC---cEEEEeecCCCC---CCCeEEEEEEEEChhhhhhccCC-----CCCccc
Q 018327          132 ASIMV---DEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-----PTSIEK  193 (358)
Q Consensus       132 ~~~~~---~~~~~~~~~~~d----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~  193 (358)
                      .+++.   +++..||++..|    ++ +   +|..+.|||..+   .++++++|+|+|++++|..+.+.     ......
T Consensus       161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt  239 (297)
T PRK10122        161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT  239 (297)
T ss_pred             EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence            54444   577899999986    33 5   688999999754   37899999999999999988642     112335


Q ss_pred             chHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          194 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       194 d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      |+++.+++++++++|.++|+|.|+++|++|++++..+
T Consensus       240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence            8899999999999999999999999999999999887

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=9.6e-37  Score=266.10  Aligned_cols=225  Identities=27%  Similarity=0.431  Sum_probs=191.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++. .+.+.+|+.+ .+.+++++.+..
T Consensus         1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~   79 (240)
T cd02538           1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV   79 (240)
T ss_pred             CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence            89999999999999999999999999999999999999999999999999998764 4778888875 345677777777


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      +..+.|++++++.+.+.+  .. +++++++||.+ .+.++.++++.|.+++.++++++   ++++.||++..|++ ++|.
T Consensus        80 ~~~~~G~~~al~~a~~~~--~~-~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~  155 (240)
T cd02538          80 QPKPGGLAQAFIIGEEFI--GD-DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL  155 (240)
T ss_pred             CCCCCCHHHHHHHHHHhc--CC-CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence            767789999999999998  33 38999999975 46679999999988778887776   56778999999976 8999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~  228 (358)
                      .+.|||....+++.++|+|+|++++++.+.+.     ......++++.+++++++.++.++  ++|.|++||++|+++++
T Consensus       156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~  235 (240)
T cd02538         156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN  235 (240)
T ss_pred             EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence            99999987778899999999999999877421     112225889999998887777766  99999999999999998


Q ss_pred             HH
Q 018327          229 LY  230 (358)
Q Consensus       229 ~~  230 (358)
                      .+
T Consensus       236 ~~  237 (240)
T cd02538         236 FV  237 (240)
T ss_pred             HH
Confidence            64

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=100.00  E-value=1.3e-36  Score=266.57  Aligned_cols=225  Identities=31%  Similarity=0.522  Sum_probs=194.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-cCcEE-----
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKI-----   75 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i-----   75 (358)
                      +|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+|+.++... .++.+     
T Consensus         1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR02623         1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN   80 (254)
T ss_pred             CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence            689999999999999999999999999999999999999999999999999999889999999864211 12222     


Q ss_pred             --------------EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCCC
Q 018327           76 --------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEPS  140 (358)
Q Consensus        76 --------------~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~  140 (358)
                                    .+..+.++.|++++++++++.+  .. ++|++++||.+++.++.++++.|.+.+++++++. .++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i--~~-e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~~~~  157 (254)
T TIGR02623        81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYL--DD-EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPG  157 (254)
T ss_pred             ccccccccCCccceeeeecCCcCCcHHHHHHHHHhc--CC-CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEecCCC
Confidence                          2233445689999999999998  33 4899999999999999999999998888888776 7788


Q ss_pred             CeeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCH
Q 018327          141 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP  220 (358)
Q Consensus       141 ~~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~  220 (358)
                      .||.+..|+  ++|..+.|||... ++++++|+|+|++++|+.+.....++..|+++.+++++++++|.++|+|.|++||
T Consensus       158 ~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~  234 (254)
T TIGR02623       158 RFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTL  234 (254)
T ss_pred             cccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCch
Confidence            999998874  6899999998643 6789999999999999888766667778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018327          221 RDYITGLRLYLD  232 (358)
Q Consensus       221 ~dy~~a~~~~l~  232 (358)
                      ++|.++++.+.+
T Consensus       235 ~~~~~~~~~~~~  246 (254)
T TIGR02623       235 RDKNYLEELWES  246 (254)
T ss_pred             HHHHHHHHHHHc
Confidence            999999887764

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=100.00  E-value=1.9e-36  Score=268.41  Aligned_cols=226  Identities=22%  Similarity=0.387  Sum_probs=193.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|||||+|+|++|..+|+++|++++.+ ..+.+++++.+ .+.|++++.+..
T Consensus         4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~   82 (292)
T PRK15480          4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV   82 (292)
T ss_pred             eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence            7899999999999999999999999999999999999999999999999988765 45778888876 456788888998


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      +..+.|+++++..+.+++  ..+ +++++.||.+ ++.++.++++.|.+++.++++++   .+|+.||++..|++ ++|.
T Consensus        83 q~~~~Gta~Al~~a~~~i--~~~-~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~  158 (292)
T PRK15480         83 QPSPDGLAQAFIIGEEFI--GGD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI  158 (292)
T ss_pred             CCCCCCHHHHHHHHHHHh--CCC-CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence            988999999999999999  433 6888899975 57889999999988777787765   78899999999976 8999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEE-EeecC-eEEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFA-MVLPG-FWMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~-~~~~~-~~~di~t~~dy~~a~~  228 (358)
                      .+.|||..+.++++++|+|+|++++++.+..-     ......|+++.+++++++.. +...+ .|.|++|+++|.+|+.
T Consensus       159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~  238 (292)
T PRK15480        159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN  238 (292)
T ss_pred             EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence            99999988889999999999999999877431     11122588899998888654 35567 5999999999999998


Q ss_pred             HHH
Q 018327          229 LYL  231 (358)
Q Consensus       229 ~~l  231 (358)
                      .+.
T Consensus       239 ~~~  241 (292)
T PRK15480        239 FIA  241 (292)
T ss_pred             HHH
Confidence            765

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=100.00  E-value=5.6e-36  Score=265.17  Aligned_cols=225  Identities=23%  Similarity=0.409  Sum_probs=192.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +|||||||.|+||+|+|..+||+|+|++|||||+|+|+.+..+|+++|+|++.+ ..+.+++++.+ .+.+++++.+..+
T Consensus         1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q   79 (286)
T TIGR01207         1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ   79 (286)
T ss_pred             CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence            689999999999999999999999999999999999999999999999988864 56778888876 4567889999888


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      .++.|+++++..+.+++  ..+ +++++.||. +++.++.++++.|.+.+.++++++   ++|+.||++..|++ ++|..
T Consensus        80 ~~~~Gta~al~~a~~~l--~~~-~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~  155 (286)
T TIGR01207        80 PSPDGLAQAFIIGEDFI--GGD-PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS  155 (286)
T ss_pred             cCCCCHHHHHHHHHHHh--CCC-CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence            88999999999999999  433 888889997 467789999999988777777776   77889999999976 89999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEee-cCe-EEecCCHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVL-PGF-WMDIGQPRDYITGLRL  229 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~-~~~-~~di~t~~dy~~a~~~  229 (358)
                      +.|||..+.++++++|+|+|++++++.+..-     ......|+++.+++++.+..... .|+ |.|++||++|++++..
T Consensus       156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~  235 (286)
T TIGR01207       156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF  235 (286)
T ss_pred             EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence            9999988889999999999999998876421     11222588999999887666555 565 9999999999999876


Q ss_pred             HH
Q 018327          230 YL  231 (358)
Q Consensus       230 ~l  231 (358)
                      +.
T Consensus       236 ~~  237 (286)
T TIGR01207       236 IQ  237 (286)
T ss_pred             HH
Confidence            54

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=100.00  E-value=9.7e-35  Score=253.05  Aligned_cols=226  Identities=33%  Similarity=0.562  Sum_probs=194.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+.+++.+. ..+++.+.++.+
T Consensus         1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~~~   79 (236)
T cd04189           1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYILQ   79 (236)
T ss_pred             CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEEEC
Confidence            8999999999999999999999999999999999999999999999999999999889999998763 245677777777


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ..+.|++++++.+++.+.  . +++++++||.+++.++.++++.|.+.+.++++++   .++..++++..|+  ++|..+
T Consensus        80 ~~~~g~~~sl~~a~~~i~--~-~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~  154 (236)
T cd04189          80 EEPLGLAHAVLAARDFLG--D-EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL  154 (236)
T ss_pred             CCCCChHHHHHHHHHhcC--C-CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence            777899999999999883  3 3899999999999999999999988888887776   5667788888874  699999


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      .+||....+.+.++|+|+|++++++.+...     ......++++.+++++ +++++..+++|.+++||+||.++++.++
T Consensus       155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l  234 (236)
T cd04189         155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL  234 (236)
T ss_pred             EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence            999876677899999999999999877421     1122358888888776 4899999999999999999999999887


Q ss_pred             H
Q 018327          232 D  232 (358)
Q Consensus       232 ~  232 (358)
                      +
T Consensus       235 ~  235 (236)
T cd04189         235 D  235 (236)
T ss_pred             h
Confidence            5

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=100.00  E-value=5e-35  Score=252.17  Aligned_cols=215  Identities=28%  Similarity=0.483  Sum_probs=186.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      +|||||||.|+||+|+|..+||+|+|++|+|||+|++++|.++|+++|++++++..+++.+|+.+  +.+++.+.+..+.
T Consensus         1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~   78 (221)
T cd06422           1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP   78 (221)
T ss_pred             CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999998999999986  4467788777666


Q ss_pred             -CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHh--cCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           82 -EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA--HGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        82 -~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                       +..|++++++.+++.+.  . ++|++++||.+++.++.++++.|.+  .+..+++..   +.+..+|.+..|++ ++|.
T Consensus        79 ~~~~g~~~~l~~~~~~~~--~-~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~  154 (221)
T cd06422          79 DELLETGGGIKKALPLLG--D-EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR  154 (221)
T ss_pred             CcccccHHHHHHHHHhcC--C-CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence             67899999999999983  3 3899999999999999999999874  445555554   45678899988876 8999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG  226 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a  226 (358)
                      .+.++|..   .+.++|+|+|+++++..+.+. .....++++.++++++++++..+++|.|++||++|.+|
T Consensus       155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence            99888753   789999999999999987654 23346889999999999999999999999999999864

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=100.00  E-value=9.9e-35  Score=255.14  Aligned_cols=226  Identities=30%  Similarity=0.523  Sum_probs=191.9

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-cCcEEEE----
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKIIC----   77 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i~~----   77 (358)
                      |||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|++++++..+.+++|+.+..+. .++.+.+    
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   80 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR   80 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence            68999999999999999999999999999999999999999999999999999999999999874321 1122211    


Q ss_pred             ---ec------------cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCCCC
Q 018327           78 ---SQ------------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEPSK  141 (358)
Q Consensus        78 ---~~------------~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~~  141 (358)
                         ..            +..+.+++++++++++.+.  .+++|++++||.+++.++.++++.|.+.+.+++++. ..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~--~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~~~~~  158 (253)
T cd02524          81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG--DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGR  158 (253)
T ss_pred             eeeecccccccceeecccCcccccHHHHHHHHHhcC--CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEecCCCc
Confidence               11            1224678999999999983  324899999999999999999999988888888776 66788


Q ss_pred             eeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHH
Q 018327          142 YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPR  221 (358)
Q Consensus       142 ~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~  221 (358)
                      ||.+..|++ ++|..+.+||... +.++++|+|+|++++++.+.....++..|+++.++++++++++.++|+|.+++|++
T Consensus       159 ~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~  236 (253)
T cd02524         159 FGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLR  236 (253)
T ss_pred             ccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHH
Confidence            999999886 8999999998643 56899999999999999887655556679999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018327          222 DYITGLRLYLD  232 (358)
Q Consensus       222 dy~~a~~~~l~  232 (358)
                      +|.++++.+.+
T Consensus       237 ~~~~~~~~~~~  247 (253)
T cd02524         237 DKQTLEELWNS  247 (253)
T ss_pred             HHHHHHHHHHc
Confidence            99999977643

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=100.00  E-value=7.6e-35  Score=258.19  Aligned_cols=228  Identities=27%  Similarity=0.381  Sum_probs=189.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh------c----
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------K----   70 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~------~----   70 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++++|++++..+.+.+|+.+...      .    
T Consensus         1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (267)
T cd02541           1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT   80 (267)
T ss_pred             CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence            899999999999999999999999999999999999999999999999999999998999999964110      0    


Q ss_pred             ----------cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHhcCCeeEEEe-
Q 018327           71 ----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMV-  136 (358)
Q Consensus        71 ----------~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~---~l~~~~~~~~~~~~~~~~~~-  136 (358)
                                .+..+.+..+..+.|++++++.+.+.++  . ++|++++||.++..   +++++++.|.+++.+..++. 
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (267)
T cd02541          81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--D-EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEE  157 (267)
T ss_pred             HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--C-CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence                      1456667777778899999999999984  3 38999999997754   49999999987665543332 


Q ss_pred             ---cCCCCeeeEEEcCC---CCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcC
Q 018327          137 ---DEPSKYGVVVMEES---TGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG  203 (358)
Q Consensus       137 ---~~~~~~~~~~~d~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~  203 (358)
                         +++..||++..|++   +++|..+.|||.  ...+.++++|+|+|++++|..+....     .....++++.+++++
T Consensus       158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~  237 (267)
T cd02541         158 VPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE  237 (267)
T ss_pred             cChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC
Confidence               35688999998851   258999999986  35678899999999999998885421     123357899999888


Q ss_pred             ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          204 KLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       204 ~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      ++++|.++|+|.|++||++|+++++.+.
T Consensus       238 ~v~~~~~~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         238 PVYAYVFEGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence            9999999999999999999999998753

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=100.00  E-value=2e-34  Score=257.21  Aligned_cols=226  Identities=27%  Similarity=0.369  Sum_probs=190.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh---h----hc---
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF---E----AK---   70 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~---~----~~---   70 (358)
                      |+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+|+++.++|+++++|++++..+.+.+|+.+.   .    ++   
T Consensus         9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   88 (302)
T PRK13389          9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_pred             eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence            7899999999999999999999999999999999999999999999999999999989999999741   1    00   


Q ss_pred             -----------cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327           71 -----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE  131 (358)
Q Consensus        71 -----------~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~  131 (358)
                                 .+..+.+..|..+.|++++++++.+++  .+ ++|++++||.+++        .++.++++.|.+++.+
T Consensus        89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~--~~-~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~  165 (302)
T PRK13389         89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVV--GD-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS  165 (302)
T ss_pred             HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHc--CC-CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence                       123555666777889999999999887  33 3899999999874        6899999999877765


Q ss_pred             eEEEe---cCCCCeeeEEEcC------CCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccch
Q 018327          132 ASIMV---DEPSKYGVVVMEE------STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEV  195 (358)
Q Consensus       132 ~~~~~---~~~~~~~~~~~d~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~  195 (358)
                       ++++   +++..||++..|.      ++++|..+.|||.  ...++++++|+|+|++++|+.+....     ..+..|+
T Consensus       166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~  244 (302)
T PRK13389        166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA  244 (302)
T ss_pred             -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence             4444   6788999998763      1257999999997  35578999999999999998875322     2334688


Q ss_pred             HHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          196 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       196 l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      ++.+++++++.+|..+|+|.|++||++|++++..+
T Consensus       245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence            99999988999999999999999999999998876

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=100.00  E-value=4.1e-34  Score=247.01  Aligned_cols=219  Identities=34%  Similarity=0.621  Sum_probs=190.6

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+++.+. ..++..+.+..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~   79 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE   79 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence            69999999999999999999999999999999999999999999999999998888888888752 12455665666667


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      ..|++++++.+++.+  .. ++|++++||.+++.++.++++.|.+.+.++++++   +++..++.+..|++ ++|..+.+
T Consensus        80 ~~G~~~~l~~a~~~~--~~-~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e  155 (223)
T cd06915          80 PLGTGGAIKNALPKL--PE-DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE  155 (223)
T ss_pred             CCcchHHHHHHHhhc--CC-CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence            789999999999988  33 3999999999998899999999987777777776   45678888888876 89999999


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHH
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG  226 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a  226 (358)
                      ||....+.+.++|+|+|++++|+.+.....++..++++.+++++++.++.++++|.|++|++||.++
T Consensus       156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence            9876667899999999999999988665566677899999988899999999999999999999887

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=100.00  E-value=7.6e-34  Score=250.86  Aligned_cols=223  Identities=25%  Similarity=0.369  Sum_probs=184.1

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh---h--------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---A--------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~---~--------   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++++|++++..+.+.+|+.+-.   .        
T Consensus         1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (260)
T TIGR01099         1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE   80 (260)
T ss_pred             CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999986310   0        


Q ss_pred             ---------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHhcCCeeEEEe-
Q 018327           70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMV-  136 (358)
Q Consensus        70 ---------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~---~l~~~~~~~~~~~~~~~~~~-  136 (358)
                               .....+.+..+..+.|++++++++++.+  .. ++|++++||.++..   ++.++++.|.+++++..++. 
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~  157 (260)
T TIGR01099        81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GD-EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEE  157 (260)
T ss_pred             HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CC-CCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEE
Confidence                     0023455566667789999999999988  33 38999999997653   69999999988777653332 


Q ss_pred             ---cCCCCeeeEEEcC---CCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcC
Q 018327          137 ---DEPSKYGVVVMEE---STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG  203 (358)
Q Consensus       137 ---~~~~~~~~~~~d~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~  203 (358)
                         +++..||++..|.   ++++|..+.|||.  ...++++++|+|+|++++|..+....     .....|+++.+++++
T Consensus       158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~  237 (260)
T TIGR01099       158 VPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE  237 (260)
T ss_pred             CChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC
Confidence               4668899998862   2268999999984  34577899999999999999885322     122357899999889


Q ss_pred             ceEEEeecCeEEecCCHHHHHHH
Q 018327          204 KLFAMVLPGFWMDIGQPRDYITG  226 (358)
Q Consensus       204 ~v~~~~~~~~~~di~t~~dy~~a  226 (358)
                      ++++|.++|+|.|++||++|+++
T Consensus       238 ~v~~~~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       238 TVYAYKFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             CEEEEEcceEEEeCCCHHHHhhC
Confidence            99999999999999999999874

Built to distinquish between the highly similar genes galU and galF

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=100.00  E-value=9.4e-33  Score=237.97  Aligned_cols=216  Identities=35%  Similarity=0.672  Sum_probs=183.3

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++++|++++..+.+++|+.+. ..+++++.++.+..
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~   79 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK   79 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence            68999999999999999999999999999999999999999999999999999888888888752 33566666666666


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      +.|+++++..+.+..    +++|++++||.+++.++.++++.|..++.++++++   .....||++..|+  ++|..+.|
T Consensus        80 ~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e  153 (220)
T cd06426          80 PLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE  153 (220)
T ss_pred             CCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence            789999988776544    23899999999999999999999988888887776   3456788888874  89999999


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHH
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      ||..  +.++++|+|+|++++++.+.+.......++++.+++++ .+.++.++++|.|++|++||.+|+
T Consensus       154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~  220 (220)
T cd06426         154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN  220 (220)
T ss_pred             CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence            8763  57899999999999999886554433468889988775 499999999999999999999874

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=100.00  E-value=8.1e-33  Score=237.90  Aligned_cols=211  Identities=40%  Similarity=0.744  Sum_probs=185.4

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|++++++++++..+.+++++.+. ..++..+.+..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~   79 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE   79 (217)
T ss_pred             CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence            68999999999999999999999999999999999999999999999999999888898888762 22466777777767


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      +.|++++++.+++.+  .. ++|++++||.+++.++.++++.|.+++.++++++   +++..|+++..|++ ++|..+.|
T Consensus        80 ~~g~~~al~~~~~~~--~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e  155 (217)
T cd04181          80 PLGTAGAVRNAEDFL--GD-DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE  155 (217)
T ss_pred             CCccHHHHHHhhhhc--CC-CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence            789999999999988  33 3999999999999999999999998888888887   55678999999886 89999999


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCC---CCcccchHHHHHhcCceEEEeecCeEEecC
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG  218 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~---~~~~~d~l~~l~~~~~v~~~~~~~~~~di~  218 (358)
                      ||....+++.++|+|+|++++++.+....   .++..++++.++++++++++.++|+|.|++
T Consensus       156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig  217 (217)
T cd04181         156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG  217 (217)
T ss_pred             CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence            98866678999999999999998876543   566678999999888999999999999985

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.4e-31  Score=224.23  Aligned_cols=229  Identities=28%  Similarity=0.417  Sum_probs=194.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh-------------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF-------------   67 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~-------------   67 (358)
                      +||||+|||.|+||.|.|+..||-|||+-+||+|+|..+.+.++|++++++|++.....+.+|+..-             
T Consensus         5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~   84 (291)
T COG1210           5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR   84 (291)
T ss_pred             cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence            4899999999999999999999999999999999999999999999999999999888888877630             


Q ss_pred             -----hh--ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--C-HHHHHHHHHhcCCeeEEEe-
Q 018327           68 -----EA--KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--P-FAEMIEFHKAHGGEASIMV-  136 (358)
Q Consensus        68 -----~~--~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~--~-l~~~~~~~~~~~~~~~~~~-  136 (358)
                           -+  ...+++.++.|.++.|.++|+++|.+++  +++ +|.|+.+|.+...  + ++++++.+.+.+.+...+. 
T Consensus        85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~E-pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~e  161 (291)
T COG1210          85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDE-PFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEE  161 (291)
T ss_pred             HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCC-ceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEE
Confidence                 12  2257889999999999999999999999  655 9999999997653  2 8999999988877555544 


Q ss_pred             ---cCCCCeeeEE----EcCCCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCCCC----c-ccchHHHHHhc
Q 018327          137 ---DEPSKYGVVV----MEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPTS----I-EKEVFPKIALE  202 (358)
Q Consensus       137 ---~~~~~~~~~~----~d~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~----~-~~d~l~~l~~~  202 (358)
                         ++.+.||++.    .+.+..+|..+.|||.  +..|++...|-|+|++++|+.|++....    + ..|.+..|.+.
T Consensus       162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~  241 (291)
T COG1210         162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK  241 (291)
T ss_pred             CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence               6778999997    3332248999999996  5689999999999999999999764322    2 25889999999


Q ss_pred             CceEEEeecCeEEecCCHHHHHHHHHHHHH
Q 018327          203 GKLFAMVLPGFWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       203 ~~v~~~~~~~~~~di~t~~dy~~a~~~~l~  232 (358)
                      ..++++.+.|..+|++++..|++++-.+..
T Consensus       242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         242 EPVLAYVFEGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             CcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence            999999999999999999999999877654

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.97  E-value=1.2e-29  Score=217.79  Aligned_cols=176  Identities=22%  Similarity=0.345  Sum_probs=144.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhcc-----CcEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL-----GIKI   75 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~-----~~~i   75 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++|+|++++..+.+++|+.+.. .+     +..+
T Consensus         1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i   79 (217)
T cd04197           1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIV   79 (217)
T ss_pred             CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcceE
Confidence            68999999999999999999999999999999999999999999999999999998899999998732 22     2345


Q ss_pred             EEeccCCcCCCchHHHHHH--hhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhc-----CCeeEEEe---cCCC-----
Q 018327           76 ICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMV---DEPS-----  140 (358)
Q Consensus        76 ~~~~~~~~~g~~~sl~~~~--~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~-----~~~~~~~~---~~~~-----  140 (358)
                      .+..+.+..+++++++...  ..+   . ++|++++||.+++.++.++++.|.+.     ++++++++   +++.     
T Consensus        80 ~~~~~~~~~~~~~al~~~~~~~~~---~-~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~  155 (217)
T cd04197          80 IIIMSEDCRSLGDALRDLDAKGLI---R-GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT  155 (217)
T ss_pred             EEEeCCCcCccchHHHHHhhcccc---C-CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence            5556666778888876543  333   2 38999999999999999999999874     66777776   2222     


Q ss_pred             -CeeeEEEcCCCCcEEEEeecCCCC--------------------CCCeEEEEEEEEChhhh
Q 018327          141 -KYGVVVMEESTGKVEKFVEKPKLF--------------------VGNKINAGIYLLNPAVL  181 (358)
Q Consensus       141 -~~~~~~~d~~~~~v~~~~ek~~~~--------------------~~~~~~~Giy~~~~~~l  181 (358)
                       .++++.+|+++++|..+.|||..+                    ++++.++|+|+|+++++
T Consensus       156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence             257888887668999999998633                    27789999999999874

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.97  E-value=4.4e-29  Score=216.31  Aligned_cols=211  Identities=29%  Similarity=0.464  Sum_probs=165.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+.   .++.+.+..+..
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~   77 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA   77 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence            68999999999999999999999999999999999999999999999999999888999888753   356665555555


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-c--CC--CCeeeEEEcCCCCcEEEE
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-D--EP--SKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~d~~~~~v~~~  157 (358)
                      +.|++++++.+++.+  .  ++|++++||.+++.   ++++.|.+.+++.++++ +  +.  ..++... +++ +++..+
T Consensus        78 ~~g~~~s~~~~~~~~--~--~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~  148 (229)
T cd02523          78 ETNNIYSLYLARDFL--D--EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI  148 (229)
T ss_pred             hhCcHHHHHHHHHHc--C--CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence            789999999999988  2  38999999998754   56677777777888777 2  11  2233322 222 678888


Q ss_pred             eecCCCCC-CCeEEEEEEEEChhhhhhccC---------CCCCcccchHHHHHhcCc--eEEEeecCeEEecCCHHHHHH
Q 018327          158 VEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGK--LFAMVLPGFWMDIGQPRDYIT  225 (358)
Q Consensus       158 ~ek~~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~d~l~~l~~~~~--v~~~~~~~~~~di~t~~dy~~  225 (358)
                      .+||.... ..+.++|+|+|+++.++.+.+         ....+..++++.++++..  ++.+.. ++|.|+++++||.+
T Consensus       149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~  227 (229)
T cd02523         149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER  227 (229)
T ss_pred             cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence            88886543 568999999999999886632         123344688999887444  444444 89999999999988


Q ss_pred             H
Q 018327          226 G  226 (358)
Q Consensus       226 a  226 (358)
                      +
T Consensus       228 a  228 (229)
T cd02523         228 A  228 (229)
T ss_pred             h
Confidence            6

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.97  E-value=1.2e-28  Score=213.98  Aligned_cols=213  Identities=22%  Similarity=0.399  Sum_probs=165.6

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh---HHHHHHHHhhhhccCcEEEEec
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      +||||||+|+||+|+|..+||+|+|++|+|||+|+|+.+..+|+++++++++...   ..+..++...  ..++.+.+. 
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~~-   77 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVEL-   77 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEEe-
Confidence            4899999999999999999999999999999999999999999999999987432   1122223221  224555433 


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      +..+.|+++++++++..+  ..+++|++++||.+++.++..++..|.+.+.++++++  .....|+++..|++ ++|..+
T Consensus        78 ~~~~~g~~~~l~~a~~~l--~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~-~~v~~~  154 (231)
T cd04183          78 DGETLGAACTVLLAADLI--DNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDEN-GRVIET  154 (231)
T ss_pred             CCCCCcHHHHHHHHHhhc--CCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCC-CCEEEe
Confidence            446789999999999988  3234899999999999999888888877666666554  45567999998886 899999


Q ss_pred             eecCCCCCCCeEEEEEEEEChh-hh-hhccC--------CCCCcccchHHHHHhcCc-eEEEee-cCeEEecCCHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPA-VL-DRIEL--------RPTSIEKEVFPKIALEGK-LFAMVL-PGFWMDIGQPRDY  223 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~-~l-~~l~~--------~~~~~~~d~l~~l~~~~~-v~~~~~-~~~~~di~t~~dy  223 (358)
                      .+|+.  .+.+.++|+|+|+++ .| +.+..        ....+..++++.+++++. +.++.+ +++|.|++||+||
T Consensus       155 ~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl  230 (231)
T cd04183         155 AEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL  230 (231)
T ss_pred             EEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence            88853  467899999999987 43 33321        112234688999988874 999998 6899999999987

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.96  E-value=8.9e-29  Score=209.66  Aligned_cols=183  Identities=27%  Similarity=0.458  Sum_probs=151.1

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccC-------cE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------IK   74 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~-------~~   74 (358)
                      |||||||.|+||+|+|...||+|+|++|+ |||+|+++++..+|+++++|++++..+++.+|+.+. ..|+       +.
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~   79 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF   79 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence            68999999999999999999999999999 999999999999999999999999999999999752 2222       23


Q ss_pred             EEEec----cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCC
Q 018327           75 IICSQ----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEES  150 (358)
Q Consensus        75 i~~~~----~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  150 (358)
                      +.+..    +..+.|++++++.+.+.+...++++|++++||.+++.++.++++.|.++++.+++++.             
T Consensus        80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~-------------  146 (200)
T cd02508          80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK-------------  146 (200)
T ss_pred             EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence            33221    3457899999999999985333348999999999999999999999887766655411             


Q ss_pred             CCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-cC----CCCCcccchHHHHHhcCceEEEeecCeEEec
Q 018327          151 TGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  217 (358)
Q Consensus       151 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~----~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di  217 (358)
                                        .++|+|+|+++++..+ ..    +..++..|+++.++++++++++..+|+|.|+
T Consensus       147 ------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di  200 (200)
T cd02508         147 ------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI  200 (200)
T ss_pred             ------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence                              6799999999998543 32    2345667999999999899999999999986

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.95  E-value=1.3e-26  Score=198.39  Aligned_cols=177  Identities=28%  Similarity=0.445  Sum_probs=143.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh-----hccCcEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----AKLGIKI   75 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-----~~~~~~i   75 (358)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|+++++|++++..+++.+|+.+..     ...++.+
T Consensus         1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (216)
T cd02507           1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV   80 (216)
T ss_pred             CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence            79999999999999999999999999999999999999999999999999999999888999987521     1123445


Q ss_pred             EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHH--HHhcCCeeEEEe-----cC-------CCC
Q 018327           76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMV-----DE-------PSK  141 (358)
Q Consensus        76 ~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~--~~~~~~~~~~~~-----~~-------~~~  141 (358)
                      .+..+....|++++++++.+.+  .  ++|++++||.+++.++.+++++  +...+..+++.+     ..       ...
T Consensus        81 ~~~~~~~~~Gta~~l~~~~~~i--~--~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
T cd02507          81 ITSDLCESAGDALRLRDIRGLI--R--SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE  156 (216)
T ss_pred             EEccCCCCCccHHHHHHHhhcC--C--CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence            5556667889999999999888  2  2899999999999999999965  444455555554     11       345


Q ss_pred             eeeEEEcCCC--CcEEEEeecCCC------------------CCCCeEEEEEEEEChhhh
Q 018327          142 YGVVVMEEST--GKVEKFVEKPKL------------------FVGNKINAGIYLLNPAVL  181 (358)
Q Consensus       142 ~~~~~~d~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~l  181 (358)
                      ++++..|+++  .++..+.+++..                  .++++.++|+|+|+++++
T Consensus       157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence            7899999876  456666665542                  246788999999999864

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.94  E-value=3.1e-26  Score=195.99  Aligned_cols=177  Identities=28%  Similarity=0.542  Sum_probs=143.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhh--hccCcEEEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--AKLGIKIIC   77 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~--~~~~~~i~~   77 (358)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++.. +.+++++.++.  ...+..+.+
T Consensus         1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~   80 (214)
T cd04198           1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT   80 (214)
T ss_pred             CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence            799999999999999999999999999999999999999999999999999999743 56777776531  122234445


Q ss_pred             eccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-c----C-------C----CC
Q 018327           78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-D----E-------P----SK  141 (358)
Q Consensus        78 ~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~----~-------~----~~  141 (358)
                      ..+....|++++++++.+.+  .  ++|++++||.+++.++..+++.|.+.++.+++++ +    .       .    ..
T Consensus        81 ~~~~~~~gt~~al~~~~~~i--~--~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~  156 (214)
T cd04198          81 IVLDEDMGTADSLRHIRKKI--K--KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE  156 (214)
T ss_pred             ecCCCCcChHHHHHHHHhhc--C--CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence            55667889999999999887  2  2899999999999999999999998888888877 1    1       0    23


Q ss_pred             eeeEEEcCCCCcEEEEeec-----------------CC-CCCCCeEEEEEEEEChhhh
Q 018327          142 YGVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVL  181 (358)
Q Consensus       142 ~~~~~~d~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~l  181 (358)
                      +.++..|++++++..+...                 |. ..+.++.++|+|+|+++++
T Consensus       157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            5688889887899877642                 11 2357789999999998864

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=1.1e-25  Score=185.50  Aligned_cols=221  Identities=27%  Similarity=0.445  Sum_probs=154.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEe-ccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|   +.||||+.++|+|+|+|+|++|+..|++++++|+ ++..+-+..++.++.  +...+.+..
T Consensus         4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~   78 (239)
T COG1213           4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS   78 (239)
T ss_pred             eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence            7999999999999999   8999999999999999999999999999999999 777788888888642  245666666


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCC----CCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEP----SKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~v~  155 (358)
                      .++..+++.|++.+.+.+.  .  .|++++||+++..   ++++...+......++...+    ..-.....+++ |++.
T Consensus        79 ~y~ktN~~~Sl~~akd~~~--~--~fii~~sD~vye~---~~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~~e~-G~i~  150 (239)
T COG1213          79 DYEKTNTGYSLLLAKDYMD--G--RFILVMSDHVYEP---SILERLLEAPGEGLIVDRRPRYVGVEEATKVKDEG-GRIV  150 (239)
T ss_pred             CcccCCceeEEeeehhhhc--C--cEEEEeCCEeecH---HHHHHHHhCcCCcEEEeccccccccCceeEEEecC-CEEe
Confidence            7777788999999999993  2  7999999999964   44444444433333333221    11112233444 8888


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEee-----cCeEEecCCHHHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL-----PGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~-----~~~~~di~t~~dy~~a~~~~  230 (358)
                      .+..+-.  .-+..++|++.|+.+.+..+.+....-..--+.++.+.-.+.....     ..+|.++|||||+.++.+.+
T Consensus       151 ~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~  228 (239)
T COG1213         151 EIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYL  228 (239)
T ss_pred             hhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHH
Confidence            8876544  3456899999999987765432110000001222222222222222     35899999999999999887


Q ss_pred             HHhhcc
Q 018327          231 LDSLRK  236 (358)
Q Consensus       231 l~~~~~  236 (358)
                      ......
T Consensus       229 ~~~~~k  234 (239)
T COG1213         229 VPNIKK  234 (239)
T ss_pred             HHHHHh
Confidence            765443

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.94  E-value=2.1e-25  Score=193.35  Aligned_cols=209  Identities=25%  Similarity=0.427  Sum_probs=163.3

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||++   .+||+|+|++|+|||+|+|+.+.+++++++++++++..+.+.+++.+    .++.+  ..+..
T Consensus         1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~~~~--~~~~~   71 (229)
T cd02540           1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PNVEF--VLQEE   71 (229)
T ss_pred             CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CCcEE--EECCC
Confidence            69999999999987   68999999999999999999999999999999999887888777764    24443  34555


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      ..|++++++++++.+... .++|++++||.  +...++..+++.|.+.+.++++..   +++..++.+..|++ ++|..+
T Consensus        72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~  149 (229)
T cd02540          72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI  149 (229)
T ss_pred             CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence            679999999999988432 34899999998  335668999998887666666554   66778888877765 899999


Q ss_pred             eecCCCC----CCCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHHH
Q 018327          158 VEKPKLF----VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPRD  222 (358)
Q Consensus       158 ~ek~~~~----~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~d  222 (358)
                      .++|...    ...+.++|+|+|+++.+. .+..      +...+..++++.+++.+ +++++..+|+  |..+++|.+
T Consensus       150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  228 (229)
T cd02540         150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ  228 (229)
T ss_pred             EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence            9887421    136889999999987554 3432      12234568899998876 4999998764  677888876

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.93  E-value=2.3e-25  Score=197.01  Aligned_cols=218  Identities=26%  Similarity=0.316  Sum_probs=156.2

Q ss_pred             CeEEEEecCCccccCcCCC-CCCCcccccCC-cchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVGGFGTRLRPLTL-SVPKPLVEFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~-~~pK~llpi~g-~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~   76 (358)
                      |++||||||.|+||+|+|. .+||+|+|++| +|||+++++++...+ +++++|++++.. +.+.+++.+    ....+.
T Consensus         1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~   76 (274)
T cd02509           1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEEN   76 (274)
T ss_pred             CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCce
Confidence            8999999999999999996 79999999998 999999999999985 999999999743 445566654    112334


Q ss_pred             EeccCCcCCCchHHHHHHhhccCC-CCCcEEEEeCCeeec--cCHHHHHHHHHh---cCCeeEEEe---cCCCCeeeEEE
Q 018327           77 CSQETEPLGTAGPLALARDKLIDD-TGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~~-~~~~~lv~~gD~i~~--~~l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~  147 (358)
                      ++.++.+.||+.++..+...+... .++.++++++|.++.  .++.++++.+.+   .+..+++.+   .....||++..
T Consensus        77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~  156 (274)
T cd02509          77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA  156 (274)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence            455677789999999998887531 234789999999775  446666765443   455566665   44478999999


Q ss_pred             cCCC-C---cEEEEeecCCCC--------CCCeEEEEEEEEChhhhhhccCC-----------------CC---Ccccch
Q 018327          148 EEST-G---KVEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRIELR-----------------PT---SIEKEV  195 (358)
Q Consensus       148 d~~~-~---~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l~~~-----------------~~---~~~~d~  195 (358)
                      +++. +   +|.+|.|||...        ...++++|+|+|+++.+....+.                 ..   .+..+.
T Consensus       157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (274)
T cd02509         157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA  236 (274)
T ss_pred             CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence            8641 2   899999999632        12478999999997766432110                 00   011122


Q ss_pred             HHH----------HHhcCceEEEeecCeEEecCCHHH
Q 018327          196 FPK----------IALEGKLFAMVLPGFWMDIGQPRD  222 (358)
Q Consensus       196 l~~----------l~~~~~v~~~~~~~~~~di~t~~d  222 (358)
                      ++.          |.+...+.+++.+..|.|+++.++
T Consensus       237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~  273 (274)
T cd02509         237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA  273 (274)
T ss_pred             HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence            222          223345778888888999998753

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.93  E-value=2.8e-24  Score=187.50  Aligned_cols=213  Identities=23%  Similarity=0.292  Sum_probs=154.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |.++|||+|.|+||+      ||+|+|++|+|||+|+++.+.++ ++++++|++++  +.+.+++.+    +++++.+..
T Consensus         2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~   69 (239)
T cd02517           2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTS   69 (239)
T ss_pred             EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcC
Confidence            468999999999995      59999999999999999999999 89999998864  667777654    356666655


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhc-CCeeEEEe---cCCC---Ceee--EEEc
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAH-GGEASIMV---DEPS---KYGV--VVME  148 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~-~~~~~~~~---~~~~---~~~~--~~~d  148 (358)
                      +....|++ .+..+.+.+.. ..+.|++++||.  +...++..+++.|.+. +.++++++   .++.   .++.  +..|
T Consensus        70 ~~~~~gt~-~~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  147 (239)
T cd02517          70 PDHPSGTD-RIAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD  147 (239)
T ss_pred             cccCchhH-HHHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence            55556776 46666666632 124799999997  4455689999988765 55666655   3333   3333  5566


Q ss_pred             CCCCcEEEEeecCC-------CCCCCeEEEEEEEEChhhhhhccCCC-CCcc-cchHH--HHHhcCc-eEEEeecCeEEe
Q 018327          149 ESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALEGK-LFAMVLPGFWMD  216 (358)
Q Consensus       149 ~~~~~v~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~-~d~l~--~l~~~~~-v~~~~~~~~~~d  216 (358)
                      ++ ++|..|.++|.       .+.+.+.++|+|+|+++.++.+.... ..+. .+.+.  .+++++. +.++..++.|.+
T Consensus       148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~  226 (239)
T cd02517         148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG  226 (239)
T ss_pred             CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence            65 89998886543       12467899999999999999875421 1111 23332  3455554 888888889999


Q ss_pred             cCCHHHHHHHHH
Q 018327          217 IGQPRDYITGLR  228 (358)
Q Consensus       217 i~t~~dy~~a~~  228 (358)
                      ++||+||.++++
T Consensus       227 i~t~~dl~~a~~  238 (239)
T cd02517         227 VDTPEDLERVEA  238 (239)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999864

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.93  E-value=6.5e-24  Score=185.88  Aligned_cols=214  Identities=21%  Similarity=0.247  Sum_probs=153.8

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .++|||+|.|+||.      ||+|+|++|+|||+|+++.+.++++++++|++++  +.+.+++.+    +++.+.+..+.
T Consensus         4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~   71 (245)
T PRK05450          4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPD   71 (245)
T ss_pred             EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCc
Confidence            48999999999994      5999999999999999999999999999998864  667666654    35666665555


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHhcCCeeEEEe---------cCCCCeeeEEEcCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMV---------DEPSKYGVVVMEES  150 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~-~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~  150 (358)
                      ...|+.. +..+...+.....+.+++++||. +. ...++.+++.+..++.+.++++         .+++.++++ +|++
T Consensus        72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~  149 (245)
T PRK05450         72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD  149 (245)
T ss_pred             CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence            5556654 33344343212233689999999 44 4558999998876655555443         344556655 7776


Q ss_pred             CCcEEEEeecCCC----------CCCCeEEEEEEEEChhhhhhccCCCCC-c--c--cchHHHHHhcCceEEEeecC-eE
Q 018327          151 TGKVEKFVEKPKL----------FVGNKINAGIYLLNPAVLDRIELRPTS-I--E--KEVFPKIALEGKLFAMVLPG-FW  214 (358)
Q Consensus       151 ~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~l~~l~~~~~~-~--~--~d~l~~l~~~~~v~~~~~~~-~~  214 (358)
                       |+|.+|.+||..          ..+.+.++|+|+|+++.++.+...... +  .  .++++.+.+..+++++..++ +|
T Consensus       150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w  228 (245)
T PRK05450        150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS  228 (245)
T ss_pred             -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence             899999999831          235899999999999999877542211 1  1  12233333445699999986 99


Q ss_pred             EecCCHHHHHHHHHHH
Q 018327          215 MDIGQPRDYITGLRLY  230 (358)
Q Consensus       215 ~di~t~~dy~~a~~~~  230 (358)
                      .|++||+||.++++.+
T Consensus       229 ~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        229 IGVDTPEDLERVRALL  244 (245)
T ss_pred             CCcCCHHHHHHHHHHh
Confidence            9999999999998653

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.92  E-value=1.1e-23  Score=199.26  Aligned_cols=223  Identities=23%  Similarity=0.322  Sum_probs=157.1

Q ss_pred             CeEEEEecCCccccCcCCCC-CCCcccccCC-cchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEE-E
Q 018327            1 MKALILVGGFGTRLRPLTLS-VPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKI-I   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i-~   76 (358)
                      |.+||||||.|+||+|+|.. +||+|+|+.| +|||+|+++.|...++++++|+++... ..+.+.+.++    +.+. .
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~   76 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN   76 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence            78999999999999999986 9999999976 899999999999999999999998643 2344455442    3332 3


Q ss_pred             EeccCCcCCCchHHHHHHhhccC--CCCCcEEEEeCCeeecc--CHHHHHHHH---HhcCCeeEEEe---cCCCCeeeEE
Q 018327           77 CSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISEY--PFAEMIEFH---KAHGGEASIMV---DEPSKYGVVV  146 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~--~~~~~~lv~~gD~i~~~--~l~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~  146 (358)
                      ++.++.+.||+.++..+...+.+  ..++.+++++||.+...  +|.++++++   .+.+..+++..   .....||++.
T Consensus        77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~  156 (468)
T TIGR01479        77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR  156 (468)
T ss_pred             EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence            55677788999988887766532  22325899999986543  378887765   33344444444   4447899999


Q ss_pred             EcCC-----CCcEEEEeecCCCC--------CCCeEEEEEEEEChhhhh------------hccCC-----C----CCcc
Q 018327          147 MEES-----TGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVLD------------RIELR-----P----TSIE  192 (358)
Q Consensus       147 ~d~~-----~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~------------~l~~~-----~----~~~~  192 (358)
                      .+++     .++|..|.|||...        .+.++++|+|+|+.+.+.            .+...     .    ..+.
T Consensus       157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  236 (468)
T TIGR01479       157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD  236 (468)
T ss_pred             eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence            8741     25899999999631        135799999999955443            22210     0    1111


Q ss_pred             cchHH---------HHH-hcCceEEEeecCeEEecCCHHHHHHHH
Q 018327          193 KEVFP---------KIA-LEGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       193 ~d~l~---------~l~-~~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      .+.++         .+. +...+++.+.+..|.|+++++++.+..
T Consensus       237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence            23344         222 334578888888899999999998874

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.90  E-value=3.4e-22  Score=174.20  Aligned_cols=208  Identities=22%  Similarity=0.282  Sum_probs=150.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .|+|||+|.|+||+      +|+|+|++|+|||+|+++.+.++ ++++++|++++  +++.+++.+    +++++.+..+
T Consensus         4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~   71 (238)
T PRK13368          4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSD   71 (238)
T ss_pred             EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCc
Confidence            48999999999994      49999999999999999999999 79999998864  667777664    3566655555


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCC-eeEEEe---c------CCCCeeeEEEc
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMV---D------EPSKYGVVVME  148 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~-~~~~~~---~------~~~~~~~~~~d  148 (358)
                      ....|+. .+..+...+  .. +.|++++||.  +...++..+++.+.+.+. .+++++   +      ++..+++ ..+
T Consensus        72 ~~~~g~~-~~~~a~~~~--~~-d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~  146 (238)
T PRK13368         72 DHLSGTD-RLAEVMLKI--EA-DIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD  146 (238)
T ss_pred             cCCCccH-HHHHHHHhC--CC-CEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence            5555665 566666665  33 4899999997  446679999998876543 333333   1      2444444 445


Q ss_pred             CCCCcEEEEeecCCC------CCCCeEEEEEEEEChhhhhhccCC-CCC---ccc-chHHHHH-hcCceEEEeecCeEEe
Q 018327          149 ESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELR-PTS---IEK-EVFPKIA-LEGKLFAMVLPGFWMD  216 (358)
Q Consensus       149 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~~-~~~---~~~-d~l~~l~-~~~~v~~~~~~~~~~d  216 (358)
                      ++ |++..+.++|..      ..+.+.++|+|+|++++|..+... ...   +.. +++ .++ ...+++++..+++|.|
T Consensus       147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D  224 (238)
T PRK13368        147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG  224 (238)
T ss_pred             CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence            55 899999865421      124478999999999999987432 111   222 555 454 4445999998899999


Q ss_pred             cCCHHHHHHHHH
Q 018327          217 IGQPRDYITGLR  228 (358)
Q Consensus       217 i~t~~dy~~a~~  228 (358)
                      ++||+||.+++.
T Consensus       225 I~t~~Dl~~a~~  236 (238)
T PRK13368        225 VDTPEDLERVRA  236 (238)
T ss_pred             CCCHHHHHHHHH
Confidence            999999999865

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=4.2e-21  Score=151.69  Aligned_cols=214  Identities=21%  Similarity=0.319  Sum_probs=148.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+|+.|+|...||+|+.+.|+|||+++|+.|..+|+.+|+||+++..++ -+||.+   ++++.+.+.+.
T Consensus         1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkd---Ky~vtLvyN~k   76 (231)
T COG4750           1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKD---KYDVTLVYNPK   76 (231)
T ss_pred             CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHH---hcCeEEEeCch
Confidence            89999999999999999999999999999999999999999999999999999997554 456664   56899999999


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEeec
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK  160 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ek  160 (358)
                      ....++..+++++++.++     +.-++.+|.++..   .+...+.....-.++..+....-..+..+.+ ++|+++.-.
T Consensus        77 Y~~yNn~ySlyla~d~l~-----ntYiidsDnyl~k---Nif~~~~~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v~Ig  147 (231)
T COG4750          77 YREYNNIYSLYLARDFLN-----NTYIIDSDNYLTK---NIFLTKESHSKYFAVYRSGKTNEWLLIYNSD-GKITRVDIG  147 (231)
T ss_pred             HHhhhhHHHHHHHHHHhc-----ccEEeccchHhhh---hhhhcCcccceEEEEEecCCCceeEEEEcCC-CcEEEEEec
Confidence            888999999999999993     4568899997643   2222222111112222244444345555665 888887543


Q ss_pred             CCCCCCCeEEEEEEEEChhhhhhcc----------CCCCCcccchHHHHHhcCceEEEee-cCeEEecCCHHHHHHHHHH
Q 018327          161 PKLFVGNKINAGIYLLNPAVLDRIE----------LRPTSIEKEVFPKIALEGKLFAMVL-PGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       161 ~~~~~~~~~~~Giy~~~~~~l~~l~----------~~~~~~~~d~l~~l~~~~~v~~~~~-~~~~~di~t~~dy~~a~~~  229 (358)
                         ....++-+|+..|+...-+.+.          +....+..++.-.-+++-.++.-.. ++...++++.++|.+....
T Consensus       148 ---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~  224 (231)
T COG4750         148 ---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQK  224 (231)
T ss_pred             ---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhh
Confidence               2345788899999876544331          1111222233222223323333222 3467889999999887654


Q ss_pred             H
Q 018327          230 Y  230 (358)
Q Consensus       230 ~  230 (358)
                      +
T Consensus       225 ~  225 (231)
T COG4750         225 F  225 (231)
T ss_pred             h
Confidence            3

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.83  E-value=2.1e-20  Score=159.83  Aligned_cols=140  Identities=23%  Similarity=0.304  Sum_probs=116.1

Q ss_pred             cchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc---------------cCcccccCCcEEecceEECCC
Q 018327          193 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHES  257 (358)
Q Consensus       193 ~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~  257 (358)
                      .|.++.|.+.+   .+..+|||.|+   ++|+++|+.+|..+..               .....+.+++.+.++++|+++
T Consensus        31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~  104 (231)
T TIGR03532        31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN  104 (231)
T ss_pred             chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence            46677777665   78888999999   9999999999976532               122356788888888889999


Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCEECCccEEcCccEECCC
Q 018327          258 AQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGED  327 (358)
Q Consensus       258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~i~~~  327 (358)
                      +.|++++.|.++++||++|.|+.++.|. +++|+++|.|+.++.|.+         ++|+++|+||.++.|.+++.||++
T Consensus       105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~  184 (231)
T TIGR03532       105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG  184 (231)
T ss_pred             CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC
Confidence            9999999888889999999999999997 899999999999999974         678888888888888887888888


Q ss_pred             cEECCceEEcC
Q 018327          328 VHVCDEIYSNG  338 (358)
Q Consensus       328 ~~i~~~~~i~~  338 (358)
                      ++|++++.+.+
T Consensus       185 ~~IgagsvV~~  195 (231)
T TIGR03532       185 AVVAAGAIVTE  195 (231)
T ss_pred             CEECCCCEEcc
Confidence            88888877753

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PLN02917 CMP-KDO synthetase

Probab=99.81  E-value=7.3e-18  Score=149.87  Aligned_cols=213  Identities=18%  Similarity=0.145  Sum_probs=145.5

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||+|.|+||.      +|.|+|++|+|||+|+++.+..++..+.++| ..+.+++.+++.++    ++.+....+.
T Consensus        49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~----~v~vi~~~~~  117 (293)
T PLN02917         49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF----GADVIMTSES  117 (293)
T ss_pred             EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc----CCEEEeCCcc
Confidence            48999999999994      4999999999999999999998774444333 34457777777642    5555544445


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEe-------cCCCCeeeEE--EcCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMV-------DEPSKYGVVV--MEES  150 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~d~~  150 (358)
                      .+.|+... ..+.+.++. ..+.+++++||..  ....++.+++.+.+. .+..+++       +++..||.+.  .|++
T Consensus       118 ~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~  194 (293)
T PLN02917        118 CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ  194 (293)
T ss_pred             cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence            55566554 677777743 2348999999993  344589999987654 3332222       6788899874  6765


Q ss_pred             CCcEEEEeecCC----C-----CCCCeEEEEEEEEChhhhhhccCC-C-----CCcccchHHHHHhcC-ceEEEeecCeE
Q 018327          151 TGKVEKFVEKPK----L-----FVGNKINAGIYLLNPAVLDRIELR-P-----TSIEKEVFPKIALEG-KLFAMVLPGFW  214 (358)
Q Consensus       151 ~~~v~~~~ek~~----~-----~~~~~~~~Giy~~~~~~l~~l~~~-~-----~~~~~d~l~~l~~~~-~v~~~~~~~~~  214 (358)
                       |++.+|..++-    +     ....+.++|+|.|+.+.|..+..- .     ..+..|+.  ++++| ++..+..+...
T Consensus       195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~  271 (293)
T PLN02917        195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEA  271 (293)
T ss_pred             -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCC
Confidence             88776664311    1     122478999999999988866421 1     12223443  33444 47777666567


Q ss_pred             EecCCHHHHHHHHHHHH
Q 018327          215 MDIGQPRDYITGLRLYL  231 (358)
Q Consensus       215 ~di~t~~dy~~a~~~~l  231 (358)
                      .-+||++|+.++.+.+.
T Consensus       272 ~GVnt~~dL~~ae~~~~  288 (293)
T PLN02917        272 HGVDTPEDVEKIEALMR  288 (293)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            78999999999987653

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=3.5e-18  Score=147.23  Aligned_cols=225  Identities=25%  Similarity=0.355  Sum_probs=152.0

Q ss_pred             CeEEEEecCCccccCcCC-CCCCCccccc-CCcchHHHHHHHHHH-CCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVGGFGTRLRPLT-LSVPKPLVEF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t-~~~pK~llpi-~g~pli~~~l~~l~~-~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~   76 (358)
                      |..||||+|.|+||||++ +..||+||++ ++++|++.+++++.. .+.+++++|+++.+ ..+++.+.++....-..  
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~--   79 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG--   79 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence            679999999999999995 6799999999 569999999999988 56899999999753 45666666533221112  


Q ss_pred             EeccCCcCCCchHHHHHHhhccCCCCC-cEEEEeCCeeeccC--HHHHHHHHHh---cCCeeEEEe---cCCCCeeeEEE
Q 018327           77 CSQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYP--FAEMIEFHKA---HGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~-~~lv~~gD~i~~~~--l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~  147 (358)
                      ++.++..++|+-++..+.-.+.+...+ -++++++|++....  +.+.++...+   .+.-.|+..   ....+|||+..
T Consensus        80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~  159 (333)
T COG0836          80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET  159 (333)
T ss_pred             eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence            345666788998888877665443322 47899999966533  6666655433   333333333   33478999997


Q ss_pred             cCC-----CCcEEEEeecCCCC-------CC-CeEEEEEEEEChhhhh-hccCC-C----------CCc-----c---cc
Q 018327          148 EES-----TGKVEKFVEKPKLF-------VG-NKINAGIYLLNPAVLD-RIELR-P----------TSI-----E---KE  194 (358)
Q Consensus       148 d~~-----~~~v~~~~ek~~~~-------~~-~~~~~Giy~~~~~~l~-~l~~~-~----------~~~-----~---~d  194 (358)
                      .+.     .-+|.+|.|||...       .+ .++++|+|+|+...+. .+..- +          ...     .   .+
T Consensus       160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e  239 (333)
T COG0836         160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE  239 (333)
T ss_pred             CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence            542     23689999999721       23 5799999999987553 33210 0          000     0   00


Q ss_pred             h----------HHHHHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327          195 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       195 ~----------l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      .          +.-|.+...+...+.+-.|-|+++...+.+..
T Consensus       240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~  282 (333)
T COG0836         240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL  282 (333)
T ss_pred             HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence            0          11233445677778887899999988776653

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.78  E-value=6.1e-18  Score=158.60  Aligned_cols=224  Identities=21%  Similarity=0.282  Sum_probs=148.6

Q ss_pred             CeEEEEecCCccccCcCCCC-CCCcccccC-CcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEE
Q 018327            1 MKALILVGGFGTRLRPLTLS-VPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC   77 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~-~pK~llpi~-g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~   77 (358)
                      |.+||||||.|+||||++.. .||+|+|+. ++|||+++++++...++.+.++|++.. ...+++.+.++..   ..-.+
T Consensus         6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i   82 (478)
T PRK15460          6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI   82 (478)
T ss_pred             eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence            67999999999999999987 799999995 579999999999988888777888863 3455556654321   01133


Q ss_pred             eccCCcCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccC--HHHHHHHHHh---cCCeeEEEe---cCCCCeeeEE
Q 018327           78 SQETEPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYP--FAEMIEFHKA---HGGEASIMV---DEPSKYGVVV  146 (358)
Q Consensus        78 ~~~~~~~g~~~sl~~~~~~i~~~~---~~~~lv~~gD~i~~~~--l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~  146 (358)
                      +.++...+|+.++..+...+.+..   +.-++++++|.+....  |.+.++...+   .+.-+|+..   .....|||+.
T Consensus        83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~  162 (478)
T PRK15460         83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR  162 (478)
T ss_pred             EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence            456667888888777665554321   2357899999965432  5555554332   233333333   3447899999


Q ss_pred             EcCCC--------CcEEEEeecCCC-------CCC-CeEEEEEEEEChhhhh-hccCC-----------------CCC--
Q 018327          147 MEEST--------GKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVLD-RIELR-----------------PTS--  190 (358)
Q Consensus       147 ~d~~~--------~~v~~~~ek~~~-------~~~-~~~~~Giy~~~~~~l~-~l~~~-----------------~~~--  190 (358)
                      .++..        .+|.+|.|||..       ..+ .++++|+|+|+.+.+. .|..-                 ...  
T Consensus       163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~  242 (478)
T PRK15460        163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI  242 (478)
T ss_pred             eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence            76431        269999999972       123 4789999999987554 22110                 000  


Q ss_pred             -cccchHHH----------HHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327          191 -IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       191 -~~~d~l~~----------l~~~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                       +..+.++.          |.+...+...+.+--|-|+++..++.+..
T Consensus       243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~  290 (478)
T PRK15460        243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS  290 (478)
T ss_pred             eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence             00111111          22334577777777899999998877653

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.76  E-value=2.5e-17  Score=136.52  Aligned_cols=179  Identities=22%  Similarity=0.334  Sum_probs=123.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|+|||||+|+||++    .||+|+|++|+|||+|+++.+..++++++++++++..+.++.++.+.    ...+   ..
T Consensus         1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~---~~   69 (183)
T TIGR00454         1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY---KN   69 (183)
T ss_pred             CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE---Ee
Confidence            8999999999999976    79999999999999999999999999999999998878888888752    1112   22


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      ....|...++..+.+.+.  ..++|++++||..  ....++.+++.+...+..+..++         ..++  .     .
T Consensus        70 ~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~---------~~~~--~-----~  131 (183)
T TIGR00454        70 ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM---------IPKE--K-----Y  131 (183)
T ss_pred             cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE---------eccc--c-----c
Confidence            445677788888887652  2349999999994  45568999998876554433322         0000  0     0


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      .+|.-....++.+|+-++.+..-.+                  +++.+ +..+.-...++|++|+..+.
T Consensus       132 ~~~~~~~~~~~p~g~n~~~~~~~~~------------------~~~~~-~~~~~~~~nvnt~~d~~~~~  181 (183)
T TIGR00454       132 PNPSIDFNGLVPAGVNIVSSKNGYQ------------------EEEII-MVIDELIVNINTKDDLKLAE  181 (183)
T ss_pred             CCCccccccEeeeEEEEecCCCccc------------------ceeee-eccccceEecCCHHHHHHhh
Confidence            1111111126889999998752111                  00110 22234688999999997664

At this time this gene appears to be present only in Archea

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=99.75  E-value=3.1e-16  Score=135.95  Aligned_cols=206  Identities=19%  Similarity=0.228  Sum_probs=137.3

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      +||+|+|.|+||.      +|+|++++|+|||+|+++.+..+++++++|+++.  +++.+++.+    +++.+.......
T Consensus         2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~~~   69 (238)
T TIGR00466         2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSKHH   69 (238)
T ss_pred             EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCCCC
Confidence            7999999999994      6999999999999999999999899999998864  456555554    355554433333


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cC------CCCeeeEEEcCCC
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DE------PSKYGVVVMEEST  151 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~d~~~  151 (358)
                      ..|+ +++..+.+.+.....+.++++.||.. . ...++++++.+.+...+++.++   .+      |.. ..+..|.+ 
T Consensus        70 ~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~-vk~v~~~~-  146 (238)
T TIGR00466        70 NSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNA-VKVVLDSQ-  146 (238)
T ss_pred             CChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCc-eEEEeCCC-
Confidence            3343 34444444432122336888999993 3 3458899988755444444443   22      222 22333654 


Q ss_pred             CcEEEEeecCC----C-------CCC--CeEEEEEEEEChhhhhhccCCC-CCcc----cchHHHHHhcCceEEEeecCe
Q 018327          152 GKVEKFVEKPK----L-------FVG--NKINAGIYLLNPAVLDRIELRP-TSIE----KEVFPKIALEGKLFAMVLPGF  213 (358)
Q Consensus       152 ~~v~~~~ek~~----~-------~~~--~~~~~Giy~~~~~~l~~l~~~~-~~~~----~d~l~~l~~~~~v~~~~~~~~  213 (358)
                      |++..|...+-    .       +..  .+...|+|.|++++|+.+..-+ ..++    -+.++.|....++.....++.
T Consensus       147 g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~  226 (238)
T TIGR00466       147 GYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEV  226 (238)
T ss_pred             CeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCC
Confidence            78777766521    1       111  3568999999999999875432 2222    255777777777888777665


Q ss_pred             -EEecCCHHHH
Q 018327          214 -WMDIGQPRDY  223 (358)
Q Consensus       214 -~~di~t~~dy  223 (358)
                       -..+|||+|+
T Consensus       227 ~~~~vdt~~d~  237 (238)
T TIGR00466       227 PSVGVDTQEDL  237 (238)
T ss_pred             CCCCCCChHHc
Confidence             4699999986

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.71  E-value=1.2e-15  Score=120.42  Aligned_cols=166  Identities=27%  Similarity=0.438  Sum_probs=122.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.++|+|+|+|+||..    .-|||++++|||||+|.++.+.+ .++++++.++++.+.++.|+.++    ++++.   .
T Consensus         1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi---~   68 (177)
T COG2266           1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVI---E   68 (177)
T ss_pred             CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEE---E
Confidence            8899999999999984    46999999999999999999998 79999999999999999999974    45543   2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-cc-CHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EY-PFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      ....|-...+..+.+.+  ..  |+|++++|+.+ +. .+..+++.+..-..+...+            -.. |+     
T Consensus        69 tpG~GYv~Dl~~al~~l--~~--P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~------------~~~-G~-----  126 (177)
T COG2266          69 TPGEGYVEDLRFALESL--GT--PILVVSADLPFLNPSIIDSVIDAAASVEVPIVTV------------VKA-GR-----  126 (177)
T ss_pred             cCCCChHHHHHHHHHhc--CC--ceEEEecccccCCHHHHHHHHHHHhhccCceeEe------------ecc-Cc-----
Confidence            33458889999999998  43  99999999944 32 3777777765111111110            010 21     


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                                ..+|+-++.+  . +                  +++.+....++..++++|++|+.++++.+-
T Consensus       127 ----------v~~Glni~~~--~-~------------------~~~~~~i~~~~la~NVNT~eDl~~a~~ll~  168 (177)
T COG2266         127 ----------VPVGLNIVGG--K-Q------------------EEEILEIDNPELAVNVNTPEDLKKAERLLR  168 (177)
T ss_pred             ----------cceeeEeecC--C-C------------------cceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence                      4577777775  0 0                  123344455567899999999999987654

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.70  E-value=1.7e-16  Score=135.82  Aligned_cols=119  Identities=11%  Similarity=0.195  Sum_probs=94.3

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe---------ccEEcc
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW  308 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~  308 (358)
                      ..++.+++.+.++++|++++.|.++ .+..++.||++|.|+.++.|+ ++.||+||.|..++.|.         +++|++
T Consensus       100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD  178 (269)
T TIGR00965       100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED  178 (269)
T ss_pred             CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence            4445677777777777777777765 455678888888888888888 68889999998888884         379999


Q ss_pred             CCEECCccEEcCccEECCCcEECCceEEc-CcEEccCc---eeccCCCCCcccC
Q 018327          309 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHK---EIKSSILKPEIVM  358 (358)
Q Consensus       309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~---~i~~~~~~~~~~~  358 (358)
                      +|+||+++.|.++++||++++||++++|. +..+.+.+   .+.+++|+++||+
T Consensus       179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~  232 (269)
T TIGR00965       179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV  232 (269)
T ss_pred             CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence            99999999999999999999999999996 55555443   4466788887763

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.68  E-value=1.9e-15  Score=129.75  Aligned_cols=207  Identities=17%  Similarity=0.198  Sum_probs=134.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+..+ ++++++|++++.. +.+.+.+..   ...  +.+..
T Consensus         1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~~~--~~~~~   72 (217)
T TIGR00453         1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---RAV--PKIVA   72 (217)
T ss_pred             CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---CCc--EEEeC
Confidence            379999999999975   4799999999999999999999998 7999999998753 344443332   111  22222


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      .  ..+..++++.+++.++  ..+.++++.||.  +....++.+++.+.+.+. +.+.+  +...++..+|++ |.+..+
T Consensus        73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~--~~~~~v~~~~~~-g~~~~~  144 (217)
T TIGR00453        73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKAGA-AILAL--PVADTLKRVEAD-GFIVET  144 (217)
T ss_pred             C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCc-EEEeE--eccceEEEEcCC-Cceeec
Confidence            1  2245678888888772  234899999999  334458999988765422 12222  223345555654 777776


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccC---CCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLR  228 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~  228 (358)
                      .++..   -....+ .|.|+.+.+..+..   +......|....+...+ ++..+..+....+++||+|+..+..
T Consensus       145 ~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~  215 (217)
T TIGR00453       145 VDREG---LWAAQT-PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA  215 (217)
T ss_pred             CChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence            65321   112333 68999888876532   11222244444444444 4666666666779999999987754

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.68  E-value=1.5e-15  Score=124.10  Aligned_cols=110  Identities=24%  Similarity=0.406  Sum_probs=90.2

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      .+.+++.+.++++|++++.|++++.|.++++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+
T Consensus        25 ~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~  104 (163)
T cd05636          25 IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN  104 (163)
T ss_pred             EECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence            45667777788888888888888888878899999999999999899999999999999998899999999999988743


Q ss_pred             ------------------------ccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327          321 ------------------------MTILGEDVHVCDEIYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       321 ------------------------~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~  350 (358)
                                              +++|++++.||.++.+. +..+++++.|..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag  159 (163)
T cd05636         105 LRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPG  159 (163)
T ss_pred             cCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence                                    47888888888887775 7777777776543

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.67  E-value=1.1e-15  Score=131.29  Aligned_cols=209  Identities=15%  Similarity=0.182  Sum_probs=134.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .+||||||.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++++|++++........+..+..  ...+.+...
T Consensus         2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~   76 (218)
T cd02516           2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG   76 (218)
T ss_pred             EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence            489999999999976   47999999999999999999999987 999999998765444433322111  112222222


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                        +.+...+++.+.+.+.....+.++++.||.. . ...++.+++.+.+.+....+.   +...+....|++ |.+.++.
T Consensus        77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~---~~~~~~~~~~~~-g~~~~~~  150 (218)
T cd02516          77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAV---PVTDTIKRVDDD-GVVVETL  150 (218)
T ss_pred             --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEE---eccccEEEecCC-CceeecC
Confidence              2356788999998874113347899999983 3 345899999886554322222   112223334554 7888776


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYIT  225 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~  225 (358)
                      +..   .-....++ ++|+.+.+..+...   ...+..|....+.+.+ ++.....+..-.+++||+||..
T Consensus       151 ~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~  217 (218)
T cd02516         151 DRE---KLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL  217 (218)
T ss_pred             ChH---HhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence            542   22234555 89998888766421   1223344444444443 4666555555569999999853

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.67  E-value=1.9e-15  Score=119.94  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=96.8

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST  311 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~  311 (358)
                      +.+++.+.++++|++++.|.+++.+..++.||++|.|+.++.|. ++.|+++|.|++++.|.+         ++|+++++
T Consensus         4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~   83 (139)
T cd03350           4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVF   83 (139)
T ss_pred             cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCE
Confidence            56778888888888888888888888888888888888888887 788999999999998863         68999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEc-CcEE---ccCceeccCCCCC-ccc
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSN-GGVV---LPHKEIKSSILKP-EIV  357 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v---~~~~~i~~~~~~~-~~~  357 (358)
                      ||.++.|.+++.||+++.|++++.+. +..+   +++..+.||+|+. .+|
T Consensus        84 Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~~  134 (139)
T cd03350          84 IGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVVV  134 (139)
T ss_pred             ECCCCEECCCCEECCCCEEcCCCEEcCCeEecccCcccEEecccCCCCEEe
Confidence            99999999889999999999998885 3333   6778999999998 443

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.67  E-value=2.8e-15  Score=129.58  Aligned_cols=212  Identities=15%  Similarity=0.146  Sum_probs=132.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEe
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~   78 (358)
                      |.+||||||.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++++|+++... +.+.+.+..   .. ..+...
T Consensus         4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~   76 (227)
T PRK00155          4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV   76 (227)
T ss_pred             eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence            3699999999999953   57999999999999999999999875 899999998754 333332221   11 122222


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~  156 (358)
                      .  ...+..+++..+.+.++  ..+.++++.||.  +....++.+++.+.+.+. +.++..-...+  ...+++ |.+.+
T Consensus        77 ~--~~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~~~~~~~--~~v~~~-g~~~~  148 (227)
T PRK00155         77 A--GGAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETGA-AILAVPVKDTI--KRSDDG-GGIVD  148 (227)
T ss_pred             C--CcchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCC-EEEEEeccccE--EEEcCC-Cceee
Confidence            2  22356889999988873  234889999998  334458999998766532 22222111112  222433 66655


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      +.+.    ..-...-+.|.|+.+.+..+...   ...+..|....+...+ ++..+..+..+.+++|++||..+...+.
T Consensus       149 ~~~r----~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~  223 (227)
T PRK00155        149 TPDR----SGLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK  223 (227)
T ss_pred             cCCh----HHheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence            5321    11122234789998888765421   1222233333333333 4666665566889999999988876543

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.66  E-value=3.3e-15  Score=125.32  Aligned_cols=180  Identities=17%  Similarity=0.252  Sum_probs=115.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      +||||||.|+||++     ||+|+|++|+|||+|+++.+.+.++++++|++++..+++.+.+.   ..+++.+.... ..
T Consensus         2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~~-~~   72 (188)
T TIGR03310         2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHNP-QY   72 (188)
T ss_pred             eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEECc-Ch
Confidence            79999999999963     89999999999999999999998999999999987655444433   22345443322 22


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEeec
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK  160 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ek  160 (358)
                      ..|...+++.+.+..  ...+.+++++||..  ....++.+++.+......+++.           ...         ..
T Consensus        73 ~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~-----------~~~---------~~  130 (188)
T TIGR03310        73 AEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP-----------LYK---------GK  130 (188)
T ss_pred             hcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe-----------ecC---------Cc
Confidence            358888999888722  22348999999993  3345888888776543322221           111         01


Q ss_pred             CCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC--ceEEEee--cCeEEecCCHHHHHH
Q 018327          161 PKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG--KLFAMVL--PGFWMDIGQPRDYIT  225 (358)
Q Consensus       161 ~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~--~v~~~~~--~~~~~di~t~~dy~~  225 (358)
                      +..+         .++++..+..+.....+   .-+..++++.  .......  .+.+.|+|||+||.+
T Consensus       131 ~~~P---------l~~~~~~~~~l~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~  187 (188)
T TIGR03310       131 RGHP---------VLFPRKLFPELLALTGD---TGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA  187 (188)
T ss_pred             cCCC---------EEECHHHHHHHHhCCCC---ccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence            1112         25788877776532111   1123333322  3333333  357899999999963

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.66  E-value=5.5e-15  Score=120.12  Aligned_cols=185  Identities=18%  Similarity=0.311  Sum_probs=131.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      -+||||||+|+||+     .||.|+|+.|+|++.++++....++.+++++|+++.. +......    ...++.+.++++
T Consensus         7 ~~VvLAAGrssRmG-----~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~~~~~v~npd   77 (199)
T COG2068           7 AAVVLAAGRSSRMG-----QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQLGVTVVVNPD   77 (199)
T ss_pred             EEEEEcccccccCC-----CcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccCCeEEEeCcc
Confidence            48999999999997     5999999999999999999999999999999999862 2222222    233566666666


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      +. .|...|+..+.+...... +-++++.||.  +...++..+++.+.+++ . .+.                   ..+.
T Consensus        78 ~~-~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~-~v~-------------------p~~~  134 (199)
T COG2068          78 YA-QGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A-AVR-------------------PVYG  134 (199)
T ss_pred             hh-hhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c-eee-------------------eecc
Confidence            55 499999999999986443 4899999999  45566888888876542 1 111                   0111


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCce--EEEee-cCeEEecCCHHHHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKL--FAMVL-PGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v--~~~~~-~~~~~di~t~~dy~~a~~~~  230 (358)
                      .+..++         .+|++..|..+..-..+-   =.+.++++...  ..... .+.-.|+|||+||.+++..+
T Consensus       135 g~rG~P---------v~~~~~~~~~l~~l~GD~---G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~  197 (199)
T COG2068         135 GARGHP---------VLLSKDLFPALARLSGDV---GARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL  197 (199)
T ss_pred             CCcCCc---------eeechhHHHHHhhcCCch---hHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence            121222         677888887775444331   15566666553  33334 67899999999999998755

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.66  E-value=1.3e-15  Score=124.29  Aligned_cols=118  Identities=28%  Similarity=0.454  Sum_probs=93.2

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      +||||||.|+||+     .||+|+|++|+|||+|+++.+...++++|+|++++  +++.+++..    .++++...... 
T Consensus         1 ~vILa~G~s~Rmg-----~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~~~~-   68 (160)
T PF12804_consen    1 AVILAAGKSSRMG-----GPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVDPEP-   68 (160)
T ss_dssp             EEEEESSSCGGGT-----SCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE-STS-
T ss_pred             CEEECCcCcccCC-----CCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEeccc-
Confidence            7999999999995     39999999999999999999999999999999998  556555543    35666544333 


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHhcCCeeEE
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASI  134 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~-~~l~~~~~~~~~~~~~~~~  134 (358)
                      ..|.+.+++.+...+.  ..++|++++||+.+ + ..++.+++.+.+++.++.+
T Consensus        69 ~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~  120 (160)
T PF12804_consen   69 GQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVV  120 (160)
T ss_dssp             SCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEE
T ss_pred             cCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEE
Confidence            4799999999998874  33499999999943 3 4589999988776554433

...

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.66  E-value=2.5e-15  Score=121.61  Aligned_cols=109  Identities=21%  Similarity=0.312  Sum_probs=96.4

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEE-----eeeEECCCcEECCCcEEeccEEccCC
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ...+.+++.+.+++.|++++.|+++++|.+   ++.||++|.|+++|.|     .+++|++++.|++++.+.+++||++|
T Consensus         6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   85 (155)
T cd04745           6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA   85 (155)
T ss_pred             CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence            344677888889999999999999999975   4899999999999999     57999999999999999999999999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      .||.++.|.+++.|++++.|++++.+. +..+.+++.+
T Consensus        86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence            999999999999999999999999986 4455555555

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.65  E-value=2.3e-15  Score=125.07  Aligned_cols=109  Identities=16%  Similarity=0.275  Sum_probs=94.5

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEE-----eeeEECCCcEECCCcEEeccEEccCC
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ...+.+++.+.++++|++++.|+++|+|.+   .++||++|.||++|.|     .+|+|+++++|++++.|.+|+|+++|
T Consensus        14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~   93 (192)
T TIGR02287        14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNA   93 (192)
T ss_pred             CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCC
Confidence            345678888889999999999999999974   5799999999999999     37999999999999999999999999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEcCcE-EccCcee
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI  347 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~-v~~~~~i  347 (358)
                      .||.++.+.+++.||+++.|++++.+.... +.++..+
T Consensus        94 ~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~  131 (192)
T TIGR02287        94 LVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV  131 (192)
T ss_pred             EECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence            999999999999999999999999886443 3344443

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.65  E-value=1.5e-14  Score=124.69  Aligned_cols=201  Identities=19%  Similarity=0.233  Sum_probs=131.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec-
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~-   79 (358)
                      .+||||+|.|+||.      +|+|+|++|+|||+|+++.+.+++ +++|+|+++  .+++.+++.++    +..+.+.. 
T Consensus         3 ~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~~   70 (223)
T cd02513           3 LAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLRP   70 (223)
T ss_pred             EEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeCC
Confidence            58999999999994      499999999999999999999987 788877664  35566555542    33222222 


Q ss_pred             ---cCCcCCCchHHHHHHhhccCC--CCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCC
Q 018327           80 ---ETEPLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEES  150 (358)
Q Consensus        80 ---~~~~~g~~~sl~~~~~~i~~~--~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~  150 (358)
                         .....++.+++..+.+.++..  ..+.++++.||.  +....++++++.+...+.++++.+  .....+.....+++
T Consensus        71 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (223)
T cd02513          71 AELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDN  150 (223)
T ss_pred             hHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccC
Confidence               123457788999998877431  124899999999  444569999999887666655555  22223332222222


Q ss_pred             CC-cEEEEeecCC-----CCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHH
Q 018327          151 TG-KVEKFVEKPK-----LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDY  223 (358)
Q Consensus       151 ~~-~v~~~~ek~~-----~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy  223 (358)
                       + .+..+.+...     .+.....++|+|+++++.+......        +     .+++..+..+. ...||+|++||
T Consensus       151 -~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~  216 (223)
T cd02513         151 -GLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDF  216 (223)
T ss_pred             -CceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHH
Confidence             2 1222211111     1233357889999999977552110        1     44666666654 68999999999


Q ss_pred             HHHHH
Q 018327          224 ITGLR  228 (358)
Q Consensus       224 ~~a~~  228 (358)
                      ..+..
T Consensus       217 ~~ae~  221 (223)
T cd02513         217 ELAEA  221 (223)
T ss_pred             HHHHH
Confidence            87754

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.64  E-value=3.5e-15  Score=124.89  Aligned_cols=117  Identities=20%  Similarity=0.345  Sum_probs=89.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||++     ||+|+|++|+|||+|+++.+...++++++|++++......+++..    .++.+... .
T Consensus         1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~   70 (186)
T cd04182           1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVIN-P   70 (186)
T ss_pred             CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEeC-C
Confidence            5689999999999976     899999999999999999999988999999998865555444432    23433222 2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhc
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAH  128 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~  128 (358)
                      ....|...++..+++.+.. ..+.+++++||+. . ...++.+++.+...
T Consensus        71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  119 (186)
T cd04182          71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFRED  119 (186)
T ss_pred             ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence            2346889999999988843 2348999999993 3 44578888876543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.64  E-value=3.6e-15  Score=118.60  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=100.7

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCC
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ..++.+++.+-+++.|++++.|+++++|++   .-.||+++.|.+||+|.     .+.||++|+||+++.|.+|.|+++|
T Consensus        17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~   96 (176)
T COG0663          17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNV   96 (176)
T ss_pred             ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCc
Confidence            356788999999999999999999999994   56899999999999996     3799999999999999999999999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCC
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI  351 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~  351 (358)
                      .||-+++|.+|+.||++|.||+++.+..+...|...+.-..
T Consensus        97 lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~  137 (176)
T COG0663          97 LIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGS  137 (176)
T ss_pred             EEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecC
Confidence            99999999999999999999999999876666665554433

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.64  E-value=2.7e-15  Score=129.84  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             CCcEEecceEECCCCEECCCcEEC-----CCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEcc
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW  308 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~  308 (358)
                      +++.+.+++++++++.|+++++|.     .+++|+++|.|+.++.|+ +++||++|+|++++.|.+         ++|++
T Consensus       102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD  181 (272)
T PRK11830        102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED  181 (272)
T ss_pred             CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence            444455555555555555555544     466777777777777777 568888888888887764         68999


Q ss_pred             CCEECCccEEcCccEECCCcEECCceEEc-CcEEcc---CceeccCCCCCcccC
Q 018327          309 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLP---HKEIKSSILKPEIVM  358 (358)
Q Consensus       309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~---~~~i~~~~~~~~~~~  358 (358)
                      +|.||.++.|..+++||++++|++++.+. +..+.|   +..+.+++|++++|+
T Consensus       182 nv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv  235 (272)
T PRK11830        182 NCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVV  235 (272)
T ss_pred             CCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEe
Confidence            99999999999999999999999999995 677774   678888999988763

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.63  E-value=1.1e-14  Score=119.08  Aligned_cols=97  Identities=23%  Similarity=0.341  Sum_probs=88.3

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  318 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i  318 (358)
                      ..+.+++.+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.++++++++.|+.++.+
T Consensus         6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i   85 (163)
T cd05636           6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV   85 (163)
T ss_pred             cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence            3467888999999999999999999999999999999999999998 799999999999999999999999999998888


Q ss_pred             cCccEECCCcEECCceEEc
Q 018327          319 ENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~  337 (358)
                      .+ ++|++++.|++++.+.
T Consensus        86 ~~-siIg~~~~I~~~~~i~  103 (163)
T cd05636          86 GD-SVLGENVNLGAGTITA  103 (163)
T ss_pred             ec-CEECCCCEECCCcEEc
Confidence            76 8888888888887663

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02296 carbonate dehydratase

Probab=99.62  E-value=7.1e-15  Score=128.00  Aligned_cols=108  Identities=18%  Similarity=0.249  Sum_probs=94.5

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------eeEECCCcEECCCcEEeccE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----------~~~i~~~~~i~~~~~i~~~~  305 (358)
                      ..+.+++.+.+++.||+++.|+++|+|.+.   ++||++|.|+++|.|.           +++||++|+|+++|+|.+++
T Consensus        59 ~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~  138 (269)
T PLN02296         59 AFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCT  138 (269)
T ss_pred             CEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCE
Confidence            446678888889999999999999999855   4999999999999995           58999999999999999999


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcCc-EEccCcee
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI  347 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i  347 (358)
                      |+++|.||.++.|.+++.|+++++|++++.+... .+.++..+
T Consensus       139 Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~  181 (269)
T PLN02296        139 VEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW  181 (269)
T ss_pred             ECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence            9999999999999999999999999999999644 45555544

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.62  E-value=1.1e-14  Score=118.57  Aligned_cols=109  Identities=11%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEee-----------eEECCCcEECCCcEEeccE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~-----------~~i~~~~~i~~~~~i~~~~  305 (358)
                      ..+.+.+.+.++++||+++.|++++.|.   ++++||++|.|+++|.|.+           +.||+++.|..++.+.+++
T Consensus         6 ~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~   85 (164)
T cd04646           6 AVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALK   85 (164)
T ss_pred             cEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeE
Confidence            4467888888999999999999999985   4589999999999999974           4689999999999999999


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcCc-EEccCceec
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEIK  348 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i~  348 (358)
                      ||++|+||.++.|.+++.||++++||+++++... .+.++..+.
T Consensus        86 IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~  129 (164)
T cd04646          86 IGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIY  129 (164)
T ss_pred             ECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEe
Confidence            9999999999999999999999999999999654 444444443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.62  E-value=2.7e-14  Score=130.83  Aligned_cols=199  Identities=15%  Similarity=0.129  Sum_probs=131.3

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .+||||||.|+||..   ..||+|+|++|+|||+|+++.|.+.+ +++++|++++...+..+.+..   .... +.++  
T Consensus         7 ~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~-v~~v--   77 (378)
T PRK09382          7 SLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF-VTLV--   77 (378)
T ss_pred             eEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe-EEEe--
Confidence            599999999999954   68999999999999999999999988 799999998754433332221   1111 2222  


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ....+..++++.+++.+.  . +.+++..+|.. . ...++.+++.+.+.  ++++..   .++..++...+|.  ..+.
T Consensus        78 ~gG~~r~~SV~~gL~~l~--~-d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~  150 (378)
T PRK09382         78 TGGATRQESVRNALEALD--S-EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK  150 (378)
T ss_pred             CCCchHHHHHHHHHHhcC--C-CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE
Confidence            233456788999998883  3 38899999973 3 34478888776543  344443   5666666544543  3453


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      .+ ++|..+....            +....+.... ..|..+.+...+ ++..+.-+..|..++||+|+..++..+
T Consensus       151 ~~-QTPQ~f~~~~------------l~~a~~~~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l  212 (378)
T PRK09382        151 LI-QTPQLSRTKT------------LKAAADGRGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL  212 (378)
T ss_pred             EE-ECCCCCCHHH------------HHHHHhCCCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence            34 6665432221            2111111112 245556665555 577788888999999999999997654

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.62  E-value=2.1e-14  Score=129.41  Aligned_cols=19  Identities=16%  Similarity=0.195  Sum_probs=12.4

Q ss_pred             cEEccCceeccCCCCCccc
Q 018327          339 GVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       339 ~~v~~~~~i~~~~~~~~~~  357 (358)
                      +.+++++.|.+|+|+++++
T Consensus       278 ~~ig~~s~V~~~v~~~~~~  296 (324)
T TIGR01853       278 VTIGAKSGVTKSIPPPGVY  296 (324)
T ss_pred             CEEccCCEeCCcCCCCcEE
Confidence            4556666777777776654

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.61  E-value=1.1e-14  Score=122.66  Aligned_cols=106  Identities=25%  Similarity=0.394  Sum_probs=81.1

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCcc
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  322 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~  322 (358)
                      ++.+++.++++|++++.|++++.|.+++.||++|.|+++|.|.++.|++++.|++++.|.++++++++.|++++.|.+++
T Consensus         7 ~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~   86 (193)
T cd03353           7 PETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT   86 (193)
T ss_pred             CCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence            45666777788888888888888877888888888888888887788888888888888888888888888888887777


Q ss_pred             EECCCcEECCceEEcCcEEccCceec
Q 018327          323 ILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      +|+++++|++++.+.++.+.++..+.
T Consensus        87 ~Ig~~~~Ig~~~~i~~s~ig~~~~i~  112 (193)
T cd03353          87 VLGEGVHIGNFVEIKKSTIGEGSKAN  112 (193)
T ss_pred             EECCCCEECCcEEEecceEcCCCEec
Confidence            77777777777776655555554443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.61  E-value=9.5e-15  Score=121.75  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=89.6

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCCE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHST  311 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~  311 (358)
                      ..+.+++.+.+++.||+++.|+++++|+++   ++|+++|.||++|.|.     +++|++++.|++++.+.+++|+++|.
T Consensus        17 a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~   96 (196)
T PRK13627         17 AFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDAL   96 (196)
T ss_pred             eEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCE
Confidence            456778888888889999999999988753   5888899999999885     47899999999999999999999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEcCcEE
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSNGGVV  341 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v  341 (358)
                      ||.++.+.+++.||++++|++++.+..+..
T Consensus        97 IG~ga~V~~g~~IG~~s~Vgags~V~~~~~  126 (196)
T PRK13627         97 VGMNSVIMDGAVIGEESIVAAMSFVKAGFQ  126 (196)
T ss_pred             ECcCCccCCCcEECCCCEEcCCCEEeCCcC
Confidence            999999999999999999999999875543

>PLN02472 uncharacterized protein

Probab=99.61  E-value=1.1e-14  Score=125.04  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=95.9

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------eeEECCCcEECCCcEEeccE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----------~~~i~~~~~i~~~~~i~~~~  305 (358)
                      ..+.+++.+.+++.|++++.|+.+++|.++   .+||++|.|+++|.|.           +++||++|+||++|.|.+++
T Consensus        66 ~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~  145 (246)
T PLN02472         66 AYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCT  145 (246)
T ss_pred             CEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeE
Confidence            456788888899999999999999998854   7899999999999994           58999999999999999999


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK  348 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~  348 (358)
                      |+++|.||.++.|.++++|+++++|++++.+. +..+.++..+.
T Consensus       146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~  189 (246)
T PLN02472        146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWA  189 (246)
T ss_pred             EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence            99999999999999999999999999999986 55565555544

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.61  E-value=1.7e-14  Score=120.30  Aligned_cols=107  Identities=27%  Similarity=0.385  Sum_probs=82.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||++     ||+|+|++|+|||+|+++.+... +++++|++++..+.    ..    ..++.+... .
T Consensus         1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~----~~~~~~v~~-~   65 (181)
T cd02503           1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YA----LLGVPVIPD-E   65 (181)
T ss_pred             CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hh----hcCCcEeeC-C
Confidence            6799999999999975     89999999999999999999987 89999999986443    11    123444332 2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHH
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFH  125 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~  125 (358)
                      ....|...+++.+++.+  .. +.++++.||.. . ...++.+++.+
T Consensus        66 ~~~~G~~~si~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          66 PPGKGPLAGILAALRAA--PA-DWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             CCCCCCHHHHHHHHHhc--CC-CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            24568899999999887  33 38999999994 3 33477777765

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=2.3e-15  Score=139.56  Aligned_cols=102  Identities=21%  Similarity=0.362  Sum_probs=96.3

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcE
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH  329 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~  329 (358)
                      -+++-++.+.+.+.+.++.+++||.++.||.++.|.||+||.||.||+|++|.+|.||.+|+||.||.|.+ |+|+++++
T Consensus       314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~  392 (673)
T KOG1461|consen  314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVK  392 (673)
T ss_pred             cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee-eEeecCcE
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             ECCceEE-cCcEEccCceeccCCC
Q 018327          330 VCDEIYS-NGGVVLPHKEIKSSIL  352 (358)
Q Consensus       330 i~~~~~i-~~~~v~~~~~i~~~~~  352 (358)
                      |++++.+ .|++++.+.++.++++
T Consensus       393 i~~~~~l~~g~vl~~~VVv~~~~~  416 (673)
T KOG1461|consen  393 IGEGAILKPGSVLGFGVVVGRNFV  416 (673)
T ss_pred             eCCCcccCCCcEEeeeeEeCCCcc
Confidence            9999999 5888888888888844

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.60  E-value=3.7e-14  Score=114.30  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=96.3

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-----eEECCCcEECCCcEEeccEEccCC
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ...+.+++.+.+++.||+++.|++++.|.+.   ++||++|.|+++|.|..     ++|++++.|++++.+.+++|+++|
T Consensus         6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   85 (154)
T cd04650           6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV   85 (154)
T ss_pred             CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence            4457888889999999999999999999865   69999999999999984     899999999999999999999999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      .|+.++.+.++++|++++++++++.+. +..+.++..+
T Consensus        86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~  123 (154)
T cd04650          86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLV  123 (154)
T ss_pred             EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence            999999999999999999999999886 4455555543

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.59  E-value=1.6e-14  Score=103.15  Aligned_cols=79  Identities=46%  Similarity=0.969  Sum_probs=74.1

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  332 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~  332 (358)
                      ++|++.|+++++|+++++|+++|.||++++|.++++++++.|++++.|.++++++++.|++++.+.+++++|++++|++
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~   80 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD   80 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence            5788999999999999999999999999999999999999999999999999999999999999999888888888864

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.59  E-value=4.1e-14  Score=118.84  Aligned_cols=120  Identities=15%  Similarity=0.211  Sum_probs=84.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh-hhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF-EAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~~~~~i~~~~   79 (358)
                      +.+||||||.|+||+.     ||.|++++|+|||+|+++.+...++++++|++++..+.+. .+.+. ....++.+....
T Consensus         1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~   74 (190)
T TIGR03202         1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCCR   74 (190)
T ss_pred             CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEECC
Confidence            4689999999999965     7999999999999999998888899999999987643321 11111 112234443333


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHh
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKA  127 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~  127 (358)
                      .. ..|...+++.+++.+.....+.++++.||.. .. ..+..+++.+..
T Consensus        75 ~~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~  123 (190)
T TIGR03202        75 DA-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR  123 (190)
T ss_pred             Ch-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence            32 3478899999988764323348999999993 33 347777776543

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.59  E-value=2e-14  Score=126.11  Aligned_cols=99  Identities=12%  Similarity=0.136  Sum_probs=50.7

Q ss_pred             EECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec--------cEEccCCEECCccE
Q 018327          259 QIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS--------SIIGWHSTVGQWAR  317 (358)
Q Consensus       259 ~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~~~~  317 (358)
                      .|+++++|.+++.||++|.|++++.|+             .+.||+++.|++++.|..        +.||+++.|+.++.
T Consensus        40 ~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~  119 (262)
T PRK05289         40 VIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVH  119 (262)
T ss_pred             EECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCE
Confidence            333333333444555555555555553             255666666666666653        23555444444444


Q ss_pred             EcCccE------------------ECCCcEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327          318 VENMTI------------------LGEDVHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       318 i~~~~~------------------i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      |..+|+                  ||+++.||.++.      |+ ++.+.+++.|.+|+|+++++
T Consensus       120 I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~  184 (262)
T PRK05289        120 VAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA  184 (262)
T ss_pred             ECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEE
Confidence            433233                  333333333322      22 45667777888999987665

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.59  E-value=4.9e-14  Score=122.00  Aligned_cols=213  Identities=10%  Similarity=0.139  Sum_probs=128.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+++.+..++ +++++|+++... ..+.+++.++.-. ...+..+.
T Consensus         4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~   79 (230)
T PRK13385          4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK   79 (230)
T ss_pred             EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC
Confidence            588999999999964   57999999999999999999998765 899999998642 2233344332100 00122221


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                        ...+..+++..+++.+.  .++.++++.||.. .. ..++++++.+.+.+....++.   -...+...+ + +.+...
T Consensus        80 --~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~---~~dti~~~~-~-~~~~~~  150 (230)
T PRK13385         80 --GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVE---VKDTVKRVK-D-KQVIET  150 (230)
T ss_pred             --CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEe---ccceEEEEc-C-CeeEec
Confidence              22344589999988873  3336788899993 33 348899888776543333331   111222222 2 444333


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhc-CceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      .++.    .-+..-+.+.|+.+.+......   ...+..|-...+... .++..+.-+.....++||+|+..+...+.
T Consensus       151 i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~  224 (230)
T PRK13385        151 VDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ  224 (230)
T ss_pred             cCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence            2211    1122234578887766644221   111223433333333 34666666667889999999999976554

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.59  E-value=3.4e-13  Score=110.44  Aligned_cols=214  Identities=22%  Similarity=0.278  Sum_probs=155.9

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      ++|+|.=.++||..      |+|-.|+|+|||.++.++..++|.++++|.+..  +++.+.+.++    |..+.....+.
T Consensus         6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~----G~~avmT~~~h   73 (247)
T COG1212           6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF----GGEAVMTSKDH   73 (247)
T ss_pred             EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh----CCEEEecCCCC
Confidence            67788888899866      999999999999999999999999999999886  7788887764    77888888888


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--CHHHHHHHHHhcCCee-EEEe--c------CCCCeeeEEEcCCC
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--PFAEMIEFHKAHGGEA-SIMV--D------EPSKYGVVVMEEST  151 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~--~l~~~~~~~~~~~~~~-~~~~--~------~~~~~~~~~~d~~~  151 (358)
                      ++|+ +.+..+.+.+.-..++-++=+.||..+-.  .+..+++....+..++ |++.  .      +|..- -+..|.+ 
T Consensus        74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~V-KvV~d~~-  150 (247)
T COG1212          74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVV-KVVLDKE-  150 (247)
T ss_pred             CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcE-EEEEcCC-
Confidence            8888 56666666663333324555689995433  3788888877765554 4443  1      22222 3345665 


Q ss_pred             CcEEEEeecCCCCC-------CCeEEEEEEEEChhhhhhccC-CCCCccc----chHHHHHhcCceEEEeecCeE-EecC
Q 018327          152 GKVEKFVEKPKLFV-------GNKINAGIYLLNPAVLDRIEL-RPTSIEK----EVFPKIALEGKLFAMVLPGFW-MDIG  218 (358)
Q Consensus       152 ~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l~~l~~-~~~~~~~----d~l~~l~~~~~v~~~~~~~~~-~di~  218 (358)
                      |+.++|+..|-.+.       .-+...|+|.+++++++.+.. .+..++.    +.|+.|....++++......- .-+|
T Consensus       151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD  230 (247)
T COG1212         151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD  230 (247)
T ss_pred             CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence            89999998765222       336789999999999997753 3444432    446666677778888887654 8999


Q ss_pred             CHHHHHHHHHHHH
Q 018327          219 QPRDYITGLRLYL  231 (358)
Q Consensus       219 t~~dy~~a~~~~l  231 (358)
                      |++|+.++.+.+.
T Consensus       231 T~EDLe~v~~~~~  243 (247)
T COG1212         231 TPEDLERVRKILS  243 (247)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999976554

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.58  E-value=1.1e-13  Score=126.60  Aligned_cols=96  Identities=26%  Similarity=0.433  Sum_probs=48.0

Q ss_pred             eEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe--------------------ccEEccCC
Q 018327          252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHS  310 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~  310 (358)
                      +.||+++.|+++++|++++.||++|.|++++.|. ++.|+++|.|+++|+|.                    +++|++++
T Consensus       131 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v  210 (343)
T PRK00892        131 VVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV  210 (343)
T ss_pred             ceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCc
Confidence            3333333333344444444444445555555554 34466666666666663                    25666666


Q ss_pred             EECCccEEcC----ccEECCCcEECCceEEc-CcEEccCcee
Q 018327          311 TVGQWARVEN----MTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       311 ~ig~~~~i~~----~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      .||++++|..    +++||++++|++.+.+. ++.+++++.|
T Consensus       211 ~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i  252 (343)
T PRK00892        211 EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAI  252 (343)
T ss_pred             EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEE
Confidence            6666666632    24555555555544442 4444444433

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.58  E-value=3.1e-13  Score=115.82  Aligned_cols=200  Identities=22%  Similarity=0.209  Sum_probs=133.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec--
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ--   79 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~--   79 (358)
                      |+|+|+|.|+||.      +|.++|++|+|||.|+++.+.+++ +++|+|.++.  +++.+..++    ++..+.+..  
T Consensus         2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r~~   69 (222)
T TIGR03584         2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLRPK   69 (222)
T ss_pred             EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeChH
Confidence            7999999999994      499999999999999999999987 6777665543  555555543    355554422  


Q ss_pred             --cCCcCCCchHHHHHHhhccC-CCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEe-c--CCCCeeeEEEcCCC
Q 018327           80 --ETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMV-D--EPSKYGVVVMEEST  151 (358)
Q Consensus        80 --~~~~~g~~~sl~~~~~~i~~-~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~d~~~  151 (358)
                        .....++.+++.++++.++. ...+.++++.+|..+  ..+++.+++.+.+.+.+..+.+ +  .+..+.. ..+++ 
T Consensus        70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~-  147 (222)
T TIGR03584        70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN-  147 (222)
T ss_pred             HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence              23356888999999988742 123479999999943  4569999999887656666655 2  1122222 33443 


Q ss_pred             CcEEEEeecC----C-C-CCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHHH
Q 018327          152 GKVEKFVEKP----K-L-FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYI  224 (358)
Q Consensus       152 ~~v~~~~ek~----~-~-~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy~  224 (358)
                      |++..+....    + + +.....+.++|+++++.+..-  ..      +    + .++...+.++. ...|||+++||.
T Consensus       148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~--~~------~----~-~~~~~~~~m~~~~~iDID~~~D~~  214 (222)
T TIGR03584       148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES--GP------I----F-SPHSIPIVLPRHLVQDIDTLEDWE  214 (222)
T ss_pred             CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc--CC------c----c-CCCcEEEEeCccceeCCCCHHHHH
Confidence            6655444211    1 1 112246889999999877541  00      0    1 34566777664 689999999999


Q ss_pred             HHHHH
Q 018327          225 TGLRL  229 (358)
Q Consensus       225 ~a~~~  229 (358)
                      .+...
T Consensus       215 ~ae~l  219 (222)
T TIGR03584       215 RAELL  219 (222)
T ss_pred             HHHHH
Confidence            88653

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.58  E-value=1.1e-13  Score=117.18  Aligned_cols=126  Identities=17%  Similarity=0.216  Sum_probs=91.6

Q ss_pred             CeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEEC
Q 018327          212 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  290 (358)
Q Consensus       212 ~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~  290 (358)
                      .++..+..+....+....+.. ........+.+.+.+.+++.|++++.|+++++|++++.||++|.|+.++.|. ++.|+
T Consensus        61 ~~iiai~~~~~~~~i~~~l~~-~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig  139 (201)
T TIGR03570        61 DLVVAIGDNKLRRRLFEKLKA-KGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG  139 (201)
T ss_pred             EEEEEcCCHHHHHHHHHHHHh-CCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence            455566555555544443322 2223334456777788888888888888888888888888888888888887 68888


Q ss_pred             CCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          291 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       291 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +++.|+.++.+.+ +.++++|.||.++.+.+++.|+++++|++++++.+
T Consensus       140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~  188 (201)
T TIGR03570       140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK  188 (201)
T ss_pred             CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence            8888888888885 78888888888888887788888888887777754

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.58  E-value=5.2e-14  Score=118.41  Aligned_cols=116  Identities=17%  Similarity=0.397  Sum_probs=68.1

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEE--------
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV--------  312 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i--------  312 (358)
                      +.+++.+.+++.|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.|.. +.|++++.|        
T Consensus        24 I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~  102 (193)
T cd03353          24 IDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK  102 (193)
T ss_pred             ECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence            44555555666666666666666664 44666777776666666666666666666655542 444444333        


Q ss_pred             --------------------------CCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCCC
Q 018327          313 --------------------------GQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSIL  352 (358)
Q Consensus       313 --------------------------g~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~  352 (358)
                                                |+++.+.       .+++||+++.||.+      +.++ ++.+.+++.|.+++|
T Consensus       103 s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~  182 (193)
T cd03353         103 STIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVP  182 (193)
T ss_pred             ceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccC
Confidence                                      3322221       02334444444444      4553 677889999999999


Q ss_pred             CCcccC
Q 018327          353 KPEIVM  358 (358)
Q Consensus       353 ~~~~~~  358 (358)
                      ++++++
T Consensus       183 ~~~~v~  188 (193)
T cd03353         183 PGALAI  188 (193)
T ss_pred             CCCEEE
Confidence            998763

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.57  E-value=7.3e-14  Score=117.60  Aligned_cols=110  Identities=25%  Similarity=0.316  Sum_probs=80.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||+.    .||+|+|++|+|||+|+++.+. .++++++|+++...+..    ..    .++.+.....
T Consensus         4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~----~~~~~v~~~~   70 (193)
T PRK00317          4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AA----FGLPVIPDSL   70 (193)
T ss_pred             ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh----cCCcEEeCCC
Confidence            5799999999999953    6899999999999999999998 67999999988643322    11    2334322222


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHH
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHK  126 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~  126 (358)
                      ....|...++..+++..  .. +.++++.||. +.. ..++.+++.+.
T Consensus        71 ~~~~g~~~~i~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~~  115 (193)
T PRK00317         71 ADFPGPLAGILAGLKQA--RT-EWVLVVPCDTPFIPPDLVARLAQAAG  115 (193)
T ss_pred             CCCCCCHHHHHHHHHhc--CC-CeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence            22367888999888765  33 3899999999 333 34777777654

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.57  E-value=5.1e-14  Score=122.47  Aligned_cols=20  Identities=5%  Similarity=-0.022  Sum_probs=15.6

Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.+.+++.|.+|+|+.+++
T Consensus       161 ~a~Vg~gs~V~~dVpp~~i~  180 (255)
T PRK12461        161 LAMMAGGSRISKDVPPYCMM  180 (255)
T ss_pred             CcEECCCceEeccCCCCeEE
Confidence            34567788899999998765

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.57  E-value=1.6e-13  Score=115.75  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=70.4

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWA  316 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~  316 (358)
                      ...+.+.+.+.+++.+++++.|+++++|++++.||++|.|+.++.|. ++.|+++|.|+.++.+.+ +.|+++|+||.++
T Consensus        84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~  163 (197)
T cd03360          84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGA  163 (197)
T ss_pred             ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence            33445666667777777777777777777777777777777777776 677777777777777765 6777777777777


Q ss_pred             EEcCccEECCCcEECCceEEcC
Q 018327          317 RVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .+.+++.||++++|++++++..
T Consensus       164 ~v~~~~~ig~~~~v~~~~~v~~  185 (197)
T cd03360         164 TIIQGVTIGAGAIIGAGAVVTK  185 (197)
T ss_pred             EEcCCCEECCCCEECCCCEEcC
Confidence            7777677777776666655543

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.57  E-value=5.2e-14  Score=123.32  Aligned_cols=116  Identities=14%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------eeEECCCcEECCCcEE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHACI  301 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~--------~~~i~~~~~i~~~~~i  301 (358)
                      +.+.+.+.+++.||+++.|+++++|+.            ++.||++|.|+++|.|.        ++.||+++.|++++.|
T Consensus        37 I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I  116 (254)
T TIGR01852        37 LKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHI  116 (254)
T ss_pred             ECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEE
Confidence            445555555666666666666666652            46666666666666664        3466666666666666


Q ss_pred             e-ccEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          302 S-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       302 ~-~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                      . ++.|++++.|+.++.+..+++||+++.|++++.+.       ++.+.+++.|.+++|+++++
T Consensus       117 ~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~  180 (254)
T TIGR01852       117 AHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV  180 (254)
T ss_pred             ccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEE
Confidence            3 36777777777777777777777777777776653       34566777778888887665

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.56  E-value=3.6e-14  Score=101.56  Aligned_cols=79  Identities=24%  Similarity=0.508  Sum_probs=72.8

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCc
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE  333 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~  333 (358)
                      |++++.|++++.|. ++.|+++|.|+++++|.+++|++++.|+++|.|.++++++++.|++++.+.+ |++|++++|+++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~-~ii~~~~~i~~~   79 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD-CLVGSGYRVEAG   79 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-CEECCCcEeCCC
Confidence            67888899999886 7999999999999999999999999999999999999999999999999987 999999999887


Q ss_pred             e
Q 018327          334 I  334 (358)
Q Consensus       334 ~  334 (358)
                      +
T Consensus        80 ~   80 (81)
T cd04652          80 T   80 (81)
T ss_pred             C
Confidence            5

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.56  E-value=3.5e-14  Score=101.22  Aligned_cols=79  Identities=35%  Similarity=0.574  Sum_probs=72.1

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  332 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~  332 (358)
                      +|++++.|++++.+. +++||++|+|++++.|.+++|++++.|++++.|.++++++++.|+.++.+.++++++++++|++
T Consensus         1 ~ig~~~~I~~~~~i~-~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           1 LIGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CccCCcEECCCCEEe-CCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            478889999999997 5999999999999999999999999999999999999999999999999988888888888764

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.56  E-value=5.2e-14  Score=122.84  Aligned_cols=102  Identities=26%  Similarity=0.395  Sum_probs=48.1

Q ss_pred             cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec--------------------c
Q 018327          246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS--------------------S  304 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~--------------------~  304 (358)
                      +.|.+++.||+++.|+++++|++++.||++|.|.+|+.|. ++.||++|.|+++++|..                    +
T Consensus       124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V  203 (338)
T COG1044         124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRV  203 (338)
T ss_pred             eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceE
Confidence            3333333333333333444444444444444444444444 355555555555555532                    2


Q ss_pred             EEccCCEECCccEEcCc----cEECCCcEECCceEEc-CcEEccCcee
Q 018327          305 IIGWHSTVGQWARVENM----TILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      +|+++|.||.|++|..+    ++|+++++|.+.+.|. ++.++.++.|
T Consensus       204 ~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I  251 (338)
T COG1044         204 IIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCII  251 (338)
T ss_pred             EECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEE
Confidence            35666666666666654    5555555554444443 3444444333

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.56  E-value=7.9e-14  Score=121.71  Aligned_cols=102  Identities=23%  Similarity=0.350  Sum_probs=49.9

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEc-------C
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE-------N  320 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~-------~  320 (358)
                      ++++|++++.||++++|.++++||++|.||+++.|. |++|.+++.||.+|.|.. +.||.+.....++.++       +
T Consensus       122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g  201 (338)
T COG1044         122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG  201 (338)
T ss_pred             CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence            333333334444444444444444444444444444 444444444444444443 3444443333221111       3


Q ss_pred             ccEECCCcEECCceEEc-C----cEEccCceeccCC
Q 018327          321 MTILGEDVHVCDEIYSN-G----GVVLPHKEIKSSI  351 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~-~----~~v~~~~~i~~~~  351 (358)
                      .++|++++.||+++.|. +    .++..++.|+...
T Consensus       202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v  237 (338)
T COG1044         202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV  237 (338)
T ss_pred             eEEECCceEEcccceeccccccCceecCCcEEccee
Confidence            57888888888888885 4    5666666666553

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.55  E-value=1.5e-13  Score=112.60  Aligned_cols=108  Identities=19%  Similarity=0.338  Sum_probs=93.2

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECC----CcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEec-cEEccC
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIGWH  309 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~~~  309 (358)
                      ..+.+++.+.+++.+++++.|+++++|..    ++.||++|.|++++.|.     ++.|++++.|++++.|.+ +.||++
T Consensus         9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~   88 (167)
T cd00710           9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN   88 (167)
T ss_pred             eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence            34567777888888888888888888865    47899999999999994     688999999999999998 899999


Q ss_pred             CEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          310 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      |.||.++.|.+ +.||+++.||+++.+.+..+.++..+.
T Consensus        89 ~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~  126 (167)
T cd00710          89 CFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVP  126 (167)
T ss_pred             CEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEEC
Confidence            99999999986 999999999999999876777777664

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.55  E-value=9.1e-14  Score=121.81  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec-----
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS-----  303 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~-----  303 (358)
                      +.+.+.+.++++|++++.|+++++|.+++.||++|.|++++.|.             +++||++|.|+++|+|..     
T Consensus        20 I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~   99 (254)
T cd03351          20 IGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQG   99 (254)
T ss_pred             ECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCC
Confidence            34444444555555555555555555566666666666666664             467777788877777763     


Q ss_pred             ---cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          304 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       304 ---~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                         +.||++|.|++++.|..+++||+++.|++++.+
T Consensus       100 ~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i  135 (254)
T cd03351         100 GGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL  135 (254)
T ss_pred             CCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence               566777777666666555555555555444433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.54  E-value=9.8e-14  Score=121.59  Aligned_cols=117  Identities=11%  Similarity=0.086  Sum_probs=84.8

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------eeEECCCcEECCCcE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHAC  300 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~--------~~~i~~~~~i~~~~~  300 (358)
                      .+.+.+.|.+++.||+++.|+++++|++            ++.||++|.|+++|.|.        .+.||++|.|++++.
T Consensus        37 ~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~  116 (254)
T cd03351          37 VIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVH  116 (254)
T ss_pred             EECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCE
Confidence            3456666667777777777777777764            67788888888888886        377888888888888


Q ss_pred             Ee-ccEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          301 IS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       301 i~-~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                      |. ++.||++|.|+.++.+..+++||+++.|++++.+.       ++.+.+++.|.+++++++++
T Consensus       117 I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~  181 (254)
T cd03351         117 VAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA  181 (254)
T ss_pred             ECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEE
Confidence            84 47888888888877777777777777777766653       34556666777788776554

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.54  E-value=1.6e-13  Score=110.87  Aligned_cols=109  Identities=20%  Similarity=0.307  Sum_probs=94.7

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-----eEECCCcEECCCcEEeccEEccCC
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~  310 (358)
                      ...+.+++.+.+++.+++++.|++++.|.++   ++||++|.|+++|+|..     ++|++++.|+.+|.+.+++|++++
T Consensus         5 ~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   84 (153)
T cd04645           5 SAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNC   84 (153)
T ss_pred             CeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCC
Confidence            3456788899999999999999999998754   69999999999999986     599999999999999999999999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEcCc-EEccCcee
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI  347 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i  347 (358)
                      .|+.++.+..++++++++.|++++.+... .+.+++.+
T Consensus        85 ~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~  122 (153)
T cd04645          85 LIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLV  122 (153)
T ss_pred             EECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence            99999999988999999999999888643 44444444

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.54  E-value=1.8e-13  Score=114.53  Aligned_cols=113  Identities=21%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||+.    .||+|+|++|+|||+|+++.+.. .+++++|+++.....   +...   ..++.+.....
T Consensus         1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~   69 (186)
T TIGR02665         1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL   69 (186)
T ss_pred             CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence            5789999999999964    59999999999999999999976 589999888764322   2111   12344433322


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHh
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKA  127 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~-~l~~~~~~~~~  127 (358)
                      ....|+..+++.+++.+  .. +.++++.||. +... .++.+++.+.+
T Consensus        70 ~~~~g~~~si~~al~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~~~  115 (186)
T TIGR02665        70 ADFPGPLAGILAGLRWA--GT-DWVLTVPCDTPFLPEDLVARLAAALEA  115 (186)
T ss_pred             CCCCCCHHHHHHHHHhc--CC-CeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence            44579999999999887  33 3899999999 3343 37777776543

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.53  E-value=1.1e-13  Score=116.35  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEecc-EEccCC-------
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS-IIGWHS-------  310 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~-~i~~~~-------  310 (358)
                      ...+++++.+. ++.||+++.|++++.|. +++||++|.|+.++.+.++.||++|.|++++.|... ...++.       
T Consensus         8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~   85 (204)
T TIGR03308         8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY   85 (204)
T ss_pred             CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence            34567777785 47888889999988885 899999999999999988999999999999888642 100000       


Q ss_pred             ------------------EECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          311 ------------------TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       311 ------------------~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                                        ....++.|++++.||.+++|.+++.++ ++.+.+++.|.+++|+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~  151 (204)
T TIGR03308        86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIV  151 (204)
T ss_pred             ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEE
Confidence                              012334444444444444444444443 45555666677777776654

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.53  E-value=2.3e-13  Score=107.99  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEc--------cCCEECCcc
Q 018327          247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIG--------WHSTVGQWA  316 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~--------~~~~ig~~~  316 (358)
                      .|++.+++++++.|++++.|.+.++++.++.||+++.|. ++.|++++.|+++|.|.. +.++        .++.|++++
T Consensus         3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~   82 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV   82 (139)
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence            455666666666666666666666666666666666666 566666666666666655 5555        235666666


Q ss_pred             EEcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327          317 RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~  350 (358)
                      .|..+++|..+++|++++.+. ++.+.++..|...
T Consensus        83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~  117 (139)
T cd03350          83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR  117 (139)
T ss_pred             EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence            666666666666666666664 5555555555554

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.52  E-value=1.2e-13  Score=98.55  Aligned_cols=79  Identities=20%  Similarity=0.369  Sum_probs=70.4

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  332 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~  332 (358)
                      +|++++.|++++.|. ++.|+++|.|+++++|.+++|++++.|++++.|.++++++++.|++++.+..+++++++++||+
T Consensus         1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~   79 (79)
T cd05787           1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD   79 (79)
T ss_pred             CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence            368888899998886 7999999999999999999999999999999999999999999999988888888888887764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=5e-14  Score=123.63  Aligned_cols=93  Identities=18%  Similarity=0.284  Sum_probs=85.7

Q ss_pred             cEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEcc
Q 018327          264 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  343 (358)
Q Consensus       264 ~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~  343 (358)
                      +.++..++++++|.|++++.|..|+||++|.||+.++|.+|++++++.||+++.|.+ |+||.+++||+++.+.+|.++|
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC~Ig~  407 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNCIIGP  407 (433)
T ss_pred             eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeeeEecC
Confidence            455567899999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             Cceec-cCCCCCccc
Q 018327          344 HKEIK-SSILKPEIV  357 (358)
Q Consensus       344 ~~~i~-~~~~~~~~~  357 (358)
                      +..|+ +..-.++++
T Consensus       408 ~yvVeak~~~~~ev~  422 (433)
T KOG1462|consen  408 GYVVEAKGKHGGEVL  422 (433)
T ss_pred             CcEEcccccccccEe
Confidence            99999 555555543

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.50  E-value=8.2e-13  Score=111.33  Aligned_cols=111  Identities=17%  Similarity=0.231  Sum_probs=84.5

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEc
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE  319 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~  319 (358)
                      +.....+++.+.+++++.++.++.|.++++|+++++||++|.|. +++|++++.|+++|.|.. +.+..++.||+++.|+
T Consensus        81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig  160 (197)
T cd03360          81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG  160 (197)
T ss_pred             CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence            45567778888888888888888888888888888888888886 788888888888777754 6666677777666666


Q ss_pred             CccEECCCcEECCceEEcCcEEccCceeccCCCCCccc
Q 018327          320 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       320 ~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~  357 (358)
                      .++.+..+++||+++.     +.+++.|.+++|+++++
T Consensus       161 ~~~~v~~~~~ig~~~~-----v~~~~~v~~~~~~~~~~  193 (197)
T cd03360         161 AGATIIQGVTIGAGAI-----IGAGAVVTKDVPDGSVV  193 (197)
T ss_pred             CCCEEcCCCEECCCCE-----ECCCCEEcCCCCCCCEE
Confidence            6666666666665554     55678888899988775

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.50  E-value=5e-13  Score=117.12  Aligned_cols=95  Identities=12%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec-----
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS-----  303 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~-----  303 (358)
                      +.+.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|.             +++||++|.|+++|+|..     
T Consensus        19 I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~   98 (254)
T TIGR01852        19 IGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASG   98 (254)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCC
Confidence            34455555555555555555555565667777777777777775             477888888888888863     


Q ss_pred             ---cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          304 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       304 ---~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                         ++||+++.|+.++.|..+|+||+++.|++++.+
T Consensus        99 ~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i  134 (254)
T TIGR01852        99 GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATL  134 (254)
T ss_pred             CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEE
Confidence               366666666666655555555555555555444

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.50  E-value=2.8e-12  Score=111.49  Aligned_cols=207  Identities=14%  Similarity=0.188  Sum_probs=118.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .+||||||.|+||+.   ..||+|++++|+|+|+|+++.+... ++++++|++++.. +.++..+.+    ++..+.++ 
T Consensus        26 ~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v-   97 (252)
T PLN02728         26 SVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFA-   97 (252)
T ss_pred             EEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEc-
Confidence            589999999999964   5899999999999999999999885 7999999999753 333333333    23334333 


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCC--e--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--V--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD--~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~  155 (358)
                       ....+..++++.+++.+..  + ..+++.+|  .  +....+..+++...+.+..  +.. -|....+...+++ +.+.
T Consensus        98 -~gg~~r~~SV~~gl~~l~~--~-~~~VlihDaarP~vs~~~i~~li~~~~~~ga~--i~~-~~~~dtik~v~~~-~~v~  169 (252)
T PLN02728         98 -LPGKERQDSVFNGLQEVDA--N-SELVCIHDSARPLVTSADIEKVLKDAAVHGAA--VLG-VPVKATIKEANSD-SFVV  169 (252)
T ss_pred             -CCCCchHHHHHHHHHhccC--C-CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE--EEe-ecchhhEEEecCC-Ccee
Confidence             2334567889999988742  2 33445555  4  3333478888877665432  222 0222223333332 4332


Q ss_pred             EEeecCCCCCCCeEEE-EEEEEChhhhhhcc----CCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINA-GIYLLNPAVLDRIE----LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~-Giy~~~~~~l~~l~----~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      ...+     ++.+..+ ---.|+.+.+....    .+.. ...|-...+...| ++....-+..-.-|.||+|+..+...
T Consensus       170 ~t~~-----R~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~  243 (252)
T PLN02728        170 KTLD-----RKRLWEMQTPQVIKPELLRRGFELVEREGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERI  243 (252)
T ss_pred             eccC-----hHHeEEEeCCccchHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHH
Confidence            2211     1111111 01234444333221    1111 1233333333333 45554444566778999999888764


Q ss_pred             H
Q 018327          230 Y  230 (358)
Q Consensus       230 ~  230 (358)
                      +
T Consensus       244 l  244 (252)
T PLN02728        244 L  244 (252)
T ss_pred             H
Confidence            4

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.49  E-value=2.6e-13  Score=129.58  Aligned_cols=116  Identities=17%  Similarity=0.399  Sum_probs=68.9

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCcc---
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWA---  316 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~---  316 (358)
                      .+.+++.|.+++.||+++.|++++.|. ++.||++|.|+++|.|.+++|+++|.|+++++|.+ ++|+++|.||.++   
T Consensus       269 ~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~  347 (451)
T TIGR01173       269 EIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK  347 (451)
T ss_pred             EEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec
Confidence            455666666667777777777766664 56666666666666665555555555555555542 4444333333222   


Q ss_pred             -------------------------EEcC-------------ccEECCCcEECCc------eEEc-CcEEccCceeccCC
Q 018327          317 -------------------------RVEN-------------MTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSI  351 (358)
Q Consensus       317 -------------------------~i~~-------------~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~  351 (358)
                                               .|+.             +++||+++.||.+      +.|+ ++.+.+++.|.+++
T Consensus       348 ~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v  427 (451)
T TIGR01173       348 NARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDV  427 (451)
T ss_pred             CcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccC
Confidence                                     1111             1334444444444      3453 67788999999999


Q ss_pred             CCCccc
Q 018327          352 LKPEIV  357 (358)
Q Consensus       352 ~~~~~~  357 (358)
                      |+++++
T Consensus       428 ~~~~~~  433 (451)
T TIGR01173       428 PEGALA  433 (451)
T ss_pred             CCCcEE
Confidence            998876

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.49  E-value=9.3e-13  Score=111.27  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=79.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +.+||||||.|+||+.     ||+|+|++|+|||+|+++.+... +++++|++++. +.......     .++.+... .
T Consensus         8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~-~   74 (200)
T PRK02726          8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLRE-P   74 (200)
T ss_pred             ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecC-C
Confidence            4689999999999954     89999999999999999999764 78998887642 22222111     13333222 2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHH
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHK  126 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~  126 (358)
                      ....|...++..+++.++  . +.++++.||..+  ...++.+++.+.
T Consensus        75 ~~~~G~~~si~~~l~~~~--~-~~vlv~~~D~P~i~~~~i~~l~~~~~  119 (200)
T PRK02726         75 PPSQGPLVAFAQGLPQIK--T-EWVLLLACDLPRLTVDVLQEWLQQLE  119 (200)
T ss_pred             CCCCChHHHHHHHHHhCC--C-CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            223688899999998883  3 489999999943  334777777654

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.48  E-value=8.2e-13  Score=111.19  Aligned_cols=96  Identities=13%  Similarity=0.143  Sum_probs=66.9

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEc--------------
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE--------------  319 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~--------------  319 (358)
                      +++++.|++++.|. ++.||++|.|+++|+|.+++||+++.|+++|.+.++.||++|.|+++++|.              
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~   83 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF   83 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence            45666666666674 577777777777777777777777777777777777777777777777664              


Q ss_pred             -----------------------CccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327          320 -----------------------NMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       320 -----------------------~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~  350 (358)
                                             .+++||+++.||.++.+. +..+++++.|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~g  138 (204)
T TIGR03308        84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAG  138 (204)
T ss_pred             ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence                                   246666666666666664 6666666666543

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.48  E-value=5.9e-13  Score=107.72  Aligned_cols=103  Identities=16%  Similarity=0.255  Sum_probs=69.8

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEE-----eccEEccCCEECCccEEcCccEE
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      +++++.|+++++|.+++.||++|.|+++|.|..    +.|+++|.|+++|+|     .+++|++++.|+.++.+.+ ++|
T Consensus         3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~I   81 (155)
T cd04745           3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTI   81 (155)
T ss_pred             cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEE
Confidence            355556666666666677777777777777763    788888888888888     4578888888888777655 666


Q ss_pred             CCCcEECCceEEc-------CcEEccCceecc--CCCCCccc
Q 018327          325 GEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV  357 (358)
Q Consensus       325 ~~~~~i~~~~~i~-------~~~v~~~~~i~~--~~~~~~~~  357 (358)
                      |+++.|++++.+.       ++.+.+++.+.+  +++++.++
T Consensus        82 g~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          82 GRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             CCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence            6666666555442       455566666665  46665543

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.48  E-value=5.3e-13  Score=116.10  Aligned_cols=16  Identities=13%  Similarity=0.052  Sum_probs=9.2

Q ss_pred             eEECCCcEECCCcEEe
Q 018327          287 CTVMRGVRIKKHACIS  302 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~  302 (358)
                      ..||++++|++++.|.
T Consensus        78 v~IG~~~~I~e~vtI~   93 (255)
T PRK12461         78 LEIGDRNVIREGVTIH   93 (255)
T ss_pred             eEECCceEECCccEEe
Confidence            4455666666666554

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.48  E-value=6.3e-13  Score=110.85  Aligned_cols=104  Identities=20%  Similarity=0.308  Sum_probs=71.0

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccE
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~  323 (358)
                      .+++++.|++++.|.+++.||++|.|+.+|+|..    ++|+++|.|+++|+|..     ++|++++.||.++.+.+ ++
T Consensus        12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g-~v   90 (196)
T PRK13627         12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CV   90 (196)
T ss_pred             ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-EE
Confidence            3455555555555555566666666666666642    57788888888888854     68999999998877665 66


Q ss_pred             ECCCcEECCceE------Ec-CcEEccCceeccCC--CCCccc
Q 018327          324 LGEDVHVCDEIY------SN-GGVVLPHKEIKSSI--LKPEIV  357 (358)
Q Consensus       324 i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~--~~~~~~  357 (358)
                      ||+++.||.++.      ++ ++.+.+++.|.+++  |+++++
T Consensus        91 IG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~  133 (196)
T PRK13627         91 IGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLL  133 (196)
T ss_pred             ECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEE
Confidence            666666666544      43 56777888888876  677665

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.48  E-value=5.1e-13  Score=122.16  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=38.8

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARV  318 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i  318 (358)
                      .+.+.+.+.+++++++++.|+++++|++++.||++|+|+++|.|. ++.||++|.|+++++|.+ +.||++|.|++++.|
T Consensus       102 ~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I  181 (343)
T PRK00892        102 GIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI  181 (343)
T ss_pred             cCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence            344445555555555555555555555445555555555555554 444555555555555544 335555555555554

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.47  E-value=5.9e-13  Score=102.92  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=52.9

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccE
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~  323 (358)
                      +++.+.++++|++++.|++++.|.+++.||++|.|++++.+.++.+. +..+...+.+.+++|+++|+||.++.+.+++.
T Consensus         9 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~-~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~   87 (119)
T cd03358           9 TNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP-RSKIYRKWELKGTTVKRGASIGANATILPGVT   87 (119)
T ss_pred             CCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC-ccccccccccCCcEECCCcEECcCCEEeCCcE
Confidence            33444444444444444444444444444444444444444433222 22233345566778888888888888877778


Q ss_pred             ECCCcEECCceEEcC
Q 018327          324 LGEDVHVCDEIYSNG  338 (358)
Q Consensus       324 i~~~~~i~~~~~i~~  338 (358)
                      |++++.|++++.+..
T Consensus        88 ig~~~~i~~~~~v~~  102 (119)
T cd03358          88 IGEYALVGAGAVVTK  102 (119)
T ss_pred             ECCCCEEccCCEEeC
Confidence            888877777766654

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.47  E-value=1.2e-12  Score=111.19  Aligned_cols=20  Identities=25%  Similarity=0.203  Sum_probs=15.0

Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.+.+++.+.+++|+++++
T Consensus       174 ~~~i~~~s~v~~~~~~~~~~  193 (205)
T cd03352         174 GVVIGAGSGVTSIVPPGEYV  193 (205)
T ss_pred             CCEEcCCCEEeeECCCCCEE
Confidence            45667778888888888765

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.47  E-value=5.1e-13  Score=127.47  Aligned_cols=117  Identities=18%  Similarity=0.360  Sum_probs=72.9

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-cc--------------
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SS--------------  304 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~--------------  304 (358)
                      ..+++++.|.+++.||+++.|+++|+|. +++||++|.|++++.|.+|+|++++.|++++.|. ++              
T Consensus       272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i  350 (456)
T PRK09451        272 VEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM  350 (456)
T ss_pred             CEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence            3456677777777777777777777774 6777777777777766666666666666655554 23              


Q ss_pred             --------------------EEccCCEECCccE-------------EcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327          305 --------------------IIGWHSTVGQWAR-------------VENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       305 --------------------~i~~~~~ig~~~~-------------i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~  350 (358)
                                          .||++|.||+++.             |+++++||.++.|..++.|+ ++.+.+++.|.+|
T Consensus       351 ~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~  430 (456)
T PRK09451        351 KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRD  430 (456)
T ss_pred             eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccc
Confidence                                3344444444332             23333333334444444453 6777889999999


Q ss_pred             CCCCccc
Q 018327          351 ILKPEIV  357 (358)
Q Consensus       351 ~~~~~~~  357 (358)
                      +|+++++
T Consensus       431 v~~~~~~  437 (456)
T PRK09451        431 VAENELV  437 (456)
T ss_pred             cCCCCEE
Confidence            9998776

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.47  E-value=1.2e-12  Score=106.49  Aligned_cols=107  Identities=18%  Similarity=0.291  Sum_probs=85.4

Q ss_pred             ccCCcEEe--cceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-------------eEECCCcEECCCcEEec
Q 018327          242 LATGANIV--GNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS  303 (358)
Q Consensus       242 ~~~~~~i~--~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-------------~~i~~~~~i~~~~~i~~  303 (358)
                      ++..+.+.  ++.++++++.|+++++|.++   +.||++|.|+++|.|..             +.|++++.|++++.+.+
T Consensus        10 i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~   89 (161)
T cd03359          10 VSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA   89 (161)
T ss_pred             ecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence            44445554  37778888888888887754   58888888888888863             47999999999999999


Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK  348 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~  348 (358)
                      +.|++++.||.++.|..+++|++++.|++++.+. +..+.|...+.
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~  135 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVS  135 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence            9999999999999999999999999999998885 55555555443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.46  E-value=7.9e-13  Score=126.25  Aligned_cols=116  Identities=19%  Similarity=0.315  Sum_probs=78.8

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-c---------------
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-S---------------  304 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~---------------  304 (358)
                      .+.+++.|.+++.||+++.|+++++|. +++||++|+|+.++.|.+++|++++.|++++++.. +               
T Consensus       276 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~  354 (459)
T PRK14355        276 TIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK  354 (459)
T ss_pred             EEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence            456677777777777888888888775 78888888888888888888888887776665543 3               


Q ss_pred             -------------------EEccCCEECCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCC
Q 018327          305 -------------------IIGWHSTVGQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSI  351 (358)
Q Consensus       305 -------------------~i~~~~~ig~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~  351 (358)
                                         +|+++|.||+++.+.       .+++||+++.||.+      +.|+ ++.+.+++.|.+|+
T Consensus       355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v  434 (459)
T PRK14355        355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDV  434 (459)
T ss_pred             CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccC
Confidence                               444445555443221       12334444444444      4453 67788999999999


Q ss_pred             CCCccc
Q 018327          352 LKPEIV  357 (358)
Q Consensus       352 ~~~~~~  357 (358)
                      |+++++
T Consensus       435 ~~~~~~  440 (459)
T PRK14355        435 PPDSLA  440 (459)
T ss_pred             CCCcEE
Confidence            998775

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.46  E-value=2.1e-12  Score=118.90  Aligned_cols=114  Identities=19%  Similarity=0.312  Sum_probs=81.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||+.    .||+|+|++|+|||+|+++.+.. .+++++|+++...+.+.+++.      ++.+.....
T Consensus         6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~------~~~~i~d~~   74 (366)
T PRK14489          6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFP------GLPVYPDIL   74 (366)
T ss_pred             ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence            4699999999999952    58999999999999999999986 499999977765444433322      123322222


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhc
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAH  128 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~  128 (358)
                      ....|...+++.+++.+  .. +.+++++||.. .. ..+..+++.+...
T Consensus        75 ~g~~G~~~si~~gl~~~--~~-~~vlv~~~D~P~i~~~~i~~L~~~~~~~  121 (366)
T PRK14489         75 PGFQGPLSGILAGLEHA--DS-EYLFVVACDTPFLPENLVKRLSKALAIE  121 (366)
T ss_pred             CCCCChHHHHHHHHHhc--CC-CcEEEeeCCcCCCCHHHHHHHHHHhhcc
Confidence            33358888999999887  33 37999999983 33 3367777765443

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.46  E-value=4.1e-12  Score=107.76  Aligned_cols=207  Identities=16%  Similarity=0.234  Sum_probs=119.8

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .|||+|||.|+||+.   ..||++++++|+|+|.|+++.|.+.. +++|+|++.+.. +.+++.+.+    ..+.+.   
T Consensus         2 ~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv---   71 (221)
T PF01128_consen    2 AAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIV---   71 (221)
T ss_dssp             EEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEE---
T ss_pred             EEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEe---
Confidence            589999999999986   78999999999999999999998865 999999999753 333333332    233332   


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHh-cCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKA-HGGEASIMVDEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~v~~  156 (358)
                       .......+|++.++..+.... +.+++..+-- +.. ..+.++++...+ .++....+   |....+...+++ +.+..
T Consensus        72 -~GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~---p~~DTik~v~~~-~~v~~  145 (221)
T PF01128_consen   72 -EGGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPAL---PVTDTIKRVDDD-GFVTE  145 (221)
T ss_dssp             -E--SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEE---E-SSEEEEESTT-SBEEE
T ss_pred             -cCChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEE---eccccEEEEecC-Ccccc
Confidence             244556789999999886544 3677777766 333 347888888766 33322222   222345555654 66665


Q ss_pred             EeecCCCCCCCeEEE-EEEEEChhhhhhccCCC----CCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINA-GIYLLNPAVLDRIELRP----TSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~-Giy~~~~~~l~~l~~~~----~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      ..+     ++.+..+ ---.|+.+.+....+..    ..+-.|. ..+.. ..+++...-+..-.-+.||+|+..+...+
T Consensus       146 tld-----R~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll  219 (221)
T PF01128_consen  146 TLD-----RSKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL  219 (221)
T ss_dssp             EET-----GGGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred             cCC-----HHHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence            543     2333322 22356666555432221    1121222 12222 34465555555667789999998886543

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.46  E-value=7.9e-13  Score=109.90  Aligned_cols=104  Identities=20%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEE-----eccEEccCCEECCccEEcCccE
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~  323 (358)
                      .|++++.|++++.|.+++.||++|.|+.+|.|.    ..+||++|.|+++|+|     .+++|++++.|+.++.|.+ |+
T Consensus        10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-si   88 (192)
T TIGR02287        10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG-CI   88 (192)
T ss_pred             cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-CE
Confidence            446666666666666677777777777777775    4688999999999998     3589999999998887776 77


Q ss_pred             ECCCcEECCceEE------c-CcEEccCceecc--CCCCCccc
Q 018327          324 LGEDVHVCDEIYS------N-GGVVLPHKEIKS--SILKPEIV  357 (358)
Q Consensus       324 i~~~~~i~~~~~i------~-~~~v~~~~~i~~--~~~~~~~~  357 (358)
                      |++++.||.++.+      + ++.+.+++.|.+  ++|+++++
T Consensus        89 Ig~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~  131 (192)
T TIGR02287        89 VGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV  131 (192)
T ss_pred             ECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence            7777777665544      2 455566666666  45665543

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.46  E-value=1.2e-12  Score=106.57  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEecc-----------EEccCCEECCccEE
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS-----------IIGWHSTVGQWARV  318 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~~-----------~i~~~~~ig~~~~i  318 (358)
                      |++++.|.+++.|.+++.||++|.|++++.|.    .++||++|.|+++|+|.++           .||+++.++.++.+
T Consensus         2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i   81 (164)
T cd04646           2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC   81 (164)
T ss_pred             cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence            44555555555555555556666666666553    2466666666666666543           35555555444433


Q ss_pred             c-----CccEECCCcEECCceEEc-CcEEccCceeccC--CCCCccc
Q 018327          319 E-----NMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS--ILKPEIV  357 (358)
Q Consensus       319 ~-----~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~--~~~~~~~  357 (358)
                      .     ++|+||.++.|+.++.|+ ++.+++++.|.++  +|+++++
T Consensus        82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi  128 (164)
T cd04646          82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVI  128 (164)
T ss_pred             EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEE
Confidence            3     333333333333444443 4555556666665  6665543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.46  E-value=7.8e-13  Score=102.22  Aligned_cols=100  Identities=17%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEcc----------CCEECCccEEcCcc
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGW----------HSTVGQWARVENMT  322 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~----------~~~ig~~~~i~~~~  322 (358)
                      +++++.|+++++|.+++.||++|.|++++.|. +++|+++|.|++++.+.++.+..          ++.||+++.|..++
T Consensus         1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~   80 (119)
T cd03358           1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA   80 (119)
T ss_pred             CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence            46777777888887788888888888888886 78888888888888888754433          33444444444444


Q ss_pred             EECCCcEECCceEEcCcEEccCceeccCCCCCcccC
Q 018327          323 ILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      ++.++++|++     ++.+.+++.+.+++|++++++
T Consensus        81 ~v~~~~~ig~-----~~~i~~~~~v~~~i~~~~~~~  111 (119)
T cd03358          81 TILPGVTIGE-----YALVGAGAVVTKDVPPYALVV  111 (119)
T ss_pred             EEeCCcEECC-----CCEEccCCEEeCcCCCCeEEe
Confidence            4444444444     455556777888999987763

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.46  E-value=7.7e-13  Score=94.65  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=70.4

Q ss_pred             ECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCC
Q 018327          272 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI  351 (358)
Q Consensus       272 ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~  351 (358)
                      ||+++.|++++.|.++.|+++|.|++++.|.++++++++.|+.++.+.+ +++++++.|++++.+.+++++++..|..+.
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            6788888888888888899999999999999999999999999999977 999999999999999999999998887753

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.46  E-value=1e-12  Score=112.77  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=13.0

Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEe
Q 018327          258 AQIGEGCLIGPDVAVGPGCVVESGVRLS  285 (358)
Q Consensus       258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~  285 (358)
                      +.||+++.|..++.||++|.||+||.|.
T Consensus       130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~  157 (269)
T TIGR00965       130 AYVDEGTMVDTWATVGSCAQIGKNVHLS  157 (269)
T ss_pred             cEECCCCEECCCcEECCCCEECCCCEEc
Confidence            4444444444444444444444444443

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.45  E-value=1.4e-12  Score=110.48  Aligned_cols=110  Identities=18%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCc
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  321 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  321 (358)
                      ...+.+.+++.+++++.|++++.|+++++|++++.||++|.|. +++|++++.|++++.|.     .++.++.+++++++
T Consensus        85 ~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~~  159 (201)
T TIGR03570        85 RFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGEG  159 (201)
T ss_pred             cceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECCC
Confidence            3445666777777777777777777777777777777777775 66666666666655554     44444444444444


Q ss_pred             cEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          322 TILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +.||.++++.+++.++ ++.+.+++.+.+++|+++++
T Consensus       160 ~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~  196 (201)
T TIGR03570       160 VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVV  196 (201)
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEE
Confidence            5555555555555553 45566678888889988775

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.44  E-value=8.9e-12  Score=108.15  Aligned_cols=186  Identities=18%  Similarity=0.220  Sum_probs=112.1

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh--HHHHHHHHhhhhccCcEEEEec
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |||||+|.|+||+      +|+|+|++|+|||+|+++.+..++ +++++|+++...  +.+.+++..    .++.+....
T Consensus         2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~~~   71 (233)
T cd02518           2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFRGS   71 (233)
T ss_pred             EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEECC
Confidence            7999999999993      499999999999999999999988 899999998764  455555543    245443322


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      .   .+.......+....  . .+.++++.||..+  ...++.+++.+...+.+.+..            .   +     
T Consensus        72 ~---~~~l~~~~~~~~~~--~-~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~------------~---~-----  125 (233)
T cd02518          72 E---EDVLGRYYQAAEEY--N-ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSN------------T---L-----  125 (233)
T ss_pred             c---hhHHHHHHHHHHHc--C-CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEec------------C---C-----
Confidence            2   12222222222222  2 3489999999933  345889998876543322110            1   1     


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCCCC-CcccchHHHHHhcCc--eEEEeec--C-----eEEecCCHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-SIEKEVFPKIALEGK--LFAMVLP--G-----FWMDIGQPRDYITGL  227 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~-~~~~d~l~~l~~~~~--v~~~~~~--~-----~~~di~t~~dy~~a~  227 (358)
                        +    .+.....+.-+|+...+..+..... ...++.+..++++..  +.....+  +     ...|+|||+||..+.
T Consensus       126 --~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~  199 (233)
T cd02518         126 --P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIK  199 (233)
T ss_pred             --C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHH
Confidence              1    1222334567788777776643222 222333322232222  3332222  2     368999999998776


Q ss_pred             HHH
Q 018327          228 RLY  230 (358)
Q Consensus       228 ~~~  230 (358)
                      ..+
T Consensus       200 ~~~  202 (233)
T cd02518         200 EIY  202 (233)
T ss_pred             HHH
Confidence            544

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.44  E-value=2.8e-12  Score=95.26  Aligned_cols=85  Identities=22%  Similarity=0.247  Sum_probs=76.3

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCc
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  328 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~  328 (358)
                      +++++++++.|++++.+.++++||++|.|++++.|. ++.|+++|.|+.  .+.+++|++++.++.++.|.+ ++||+++
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-siIg~~v   86 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-SYLGSWC   86 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-eEECCCC
Confidence            678999999999999998889999999999999998 799999999975  688899999999999999986 9999999


Q ss_pred             EECCceEEc
Q 018327          329 HVCDEIYSN  337 (358)
Q Consensus       329 ~i~~~~~i~  337 (358)
                      .||+++...
T Consensus        87 ~ig~~~~~~   95 (101)
T cd05635          87 NLGAGTNNS   95 (101)
T ss_pred             EECCCceec
Confidence            999998764

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02296 carbonate dehydratase

Probab=99.43  E-value=1.8e-12  Score=113.03  Aligned_cols=101  Identities=21%  Similarity=0.266  Sum_probs=64.2

Q ss_pred             CCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEe-----------ccEEccCCEECCccEEcC
Q 018327          256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~~i~~  320 (358)
                      +++.|.+++.+.+++.||++|.|+.+|.|.    +++||++|.|+++|+|.           +++||++|.||.++.|.+
T Consensus        57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g  136 (269)
T PLN02296         57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG  136 (269)
T ss_pred             CCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC
Confidence            333333334343445555555555555554    35788888888888885           478999999998877644


Q ss_pred             ccEECCCcEECCce------EEc-CcEEccCceeccC--CCCCccc
Q 018327          321 MTILGEDVHVCDEI------YSN-GGVVLPHKEIKSS--ILKPEIV  357 (358)
Q Consensus       321 ~~~i~~~~~i~~~~------~i~-~~~v~~~~~i~~~--~~~~~~~  357 (358)
                       |+||++|.||.++      .|+ ++.+.+++.|.++  +|+++++
T Consensus       137 -~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~  181 (269)
T PLN02296        137 -CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW  181 (269)
T ss_pred             -CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence             5555555555554      443 5666777788777  7887764

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.43  E-value=1e-12  Score=98.62  Aligned_cols=79  Identities=23%  Similarity=0.437  Sum_probs=70.5

Q ss_pred             CEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          258 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +.|++++.| .+++||++|.|+ ++.|.+|++++++.|+++|.|.++++++++.||.++.+.+ ++|++++.|++++.+.
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~   78 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIG   78 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEEC
Confidence            567778878 488999999999 8999999999999999999999999999999999999976 9999999999999987


Q ss_pred             Cc
Q 018327          338 GG  339 (358)
Q Consensus       338 ~~  339 (358)
                      +.
T Consensus        79 ~~   80 (104)
T cd04651          79 GD   80 (104)
T ss_pred             CC
Confidence            54

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.43  E-value=1.9e-11  Score=103.14  Aligned_cols=211  Identities=16%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .+||+|||.|+||..   ..||++++++|+||++|+++.|.... +++|+|+++. ..+.+.++..   ...+..+..+ 
T Consensus         6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v-   78 (230)
T COG1211           6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVV-   78 (230)
T ss_pred             EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEe-
Confidence            589999999999998   89999999999999999999998887 8999999997 3333333332   1222233222 


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                       .+...-.+|++.+++.+.+..++.||+..+-- ++. ..++++++.....++-...+   |-...+...+.+ +.+...
T Consensus        79 -~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~al---pv~DTik~~~~~-~~i~~t  153 (230)
T COG1211          79 -KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILAL---PVTDTLKRVDAD-GNIVET  153 (230)
T ss_pred             -cCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEe---eccCcEEEecCC-CCeeec
Confidence             34556678999999999542343566665555 333 34788884333232222222   222234444433 555444


Q ss_pred             eecCCCCCCCeEEE-EEEEEChhhhhhccC----CCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINA-GIYLLNPAVLDRIEL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       158 ~ek~~~~~~~~~~~-Giy~~~~~~l~~l~~----~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      ...     +.+.-+ ---.|+.+.|.....    ....+-.|.--......++..+.=+-+-.-+.||+|+.-+...
T Consensus       154 ~~R-----~~l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~i  225 (230)
T COG1211         154 VDR-----SGLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAI  225 (230)
T ss_pred             cCh-----hhhhhhhCCccccHHHHHHHHHHHHhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHH
Confidence            322     111100 002344444432211    1122222222111123455555545567789999999887643

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.42  E-value=2.6e-12  Score=99.60  Aligned_cols=95  Identities=20%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST  311 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~  311 (358)
                      +.+++.+...+.|++++.|.+++++..++.||++|.|..  +|. +++|+++|.|++++.|..         +.||++|+
T Consensus         4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~   81 (147)
T cd04649           4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCL   81 (147)
T ss_pred             ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCE
Confidence            345666666666777777777666666677777777662  232 455566666666666652         46888888


Q ss_pred             ECCccEEcCccEECCCcEECCceEEcCcE
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSNGGV  340 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~  340 (358)
                      ||.++.|  +..||++++||+++.+....
T Consensus        82 IG~ga~I--gv~IG~~~vIGaGsvV~k~t  108 (147)
T cd04649          82 LGANSGI--GISLGDNCIVEAGLYVTAGT  108 (147)
T ss_pred             ECCCCEE--eEEECCCCEECCCCEEeCCe
Confidence            8888888  48888888888888775433

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.41  E-value=5.6e-12  Score=107.16  Aligned_cols=13  Identities=31%  Similarity=0.409  Sum_probs=4.8

Q ss_pred             eEECCCcEECCCc
Q 018327          287 CTVMRGVRIKKHA  299 (358)
Q Consensus       287 ~~i~~~~~i~~~~  299 (358)
                      +.|++++.|++++
T Consensus        56 ~~Ig~~~~I~~~~   68 (205)
T cd03352          56 CIIGDRVIIHSGA   68 (205)
T ss_pred             CEECCCcEECCCC
Confidence            3333333333333

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.41  E-value=6e-12  Score=97.61  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=32.4

Q ss_pred             EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEc
Q 018327          247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIG  307 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~  307 (358)
                      .+.+.+++.+++.|+++++|..++++..++.||++|.|.. .|+.++.|+++|.|.+ +.|.
T Consensus         3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~   63 (147)
T cd04649           3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM   63 (147)
T ss_pred             EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence            3445555555555555555555555555555555555532 4445566666655555 4444

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PLN02472 uncharacterized protein

Probab=99.41  E-value=3.1e-12  Score=110.04  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEe-----------ccEEccCCEECCccEE
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWARV  318 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~~i  318 (358)
                      +++++.|.+++++.+++.||++|.|+.+++|.    ...||+++.|+++|+|.           +++||++|.||.++.|
T Consensus        62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L  141 (246)
T PLN02472         62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL  141 (246)
T ss_pred             cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence            34444444444444455555555555555554    25788888888888884           4789999999988887


Q ss_pred             cCccEECCCcEECCceEEc-------CcEEccCceec--cCCCCCccc
Q 018327          319 ENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      .+ |+|++++.||.++++.       ++.+.+++.|.  .++|+++++
T Consensus       142 ~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~  188 (246)
T PLN02472        142 RS-CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW  188 (246)
T ss_pred             CC-eEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence            65 7777777777766653       45566666666  457777654

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.40  E-value=2.4e-12  Score=106.29  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=19.3

Q ss_pred             EEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .||+++.+..++.|..+|+||++|++.+++.+.|
T Consensus       108 ~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG  141 (260)
T COG1043         108 RIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG  141 (260)
T ss_pred             EECCCCEEEEeeeeeccceecCcEEEecCCeEec
Confidence            3555555555555555566666666555555544

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=3.2e-12  Score=121.76  Aligned_cols=84  Identities=24%  Similarity=0.362  Sum_probs=70.8

Q ss_pred             EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-ccEEccCCEECCccEEcCccEEC
Q 018327          247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILG  325 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~i~  325 (358)
                      .+++.+.|++++.|+++++|++++.||++|.|+.++.|.+++||++|+|++++.|. +++||++|.||+++.+.+ ++|+
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~  342 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN-AKLG  342 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEec-eEEC
Confidence            56678899999999999999999999999999999999999999999999999998 589999999999887754 4444


Q ss_pred             CCcEEC
Q 018327          326 EDVHVC  331 (358)
Q Consensus       326 ~~~~i~  331 (358)
                      +++.++
T Consensus       343 ~~~~i~  348 (446)
T PRK14353        343 EGAKVN  348 (446)
T ss_pred             CCCEEC
Confidence            443333

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.40  E-value=2.3e-12  Score=122.96  Aligned_cols=103  Identities=15%  Similarity=0.299  Sum_probs=59.4

Q ss_pred             CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCC
Q 018327          255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGED  327 (358)
Q Consensus       255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~  327 (358)
                      ++++.|++++.|+++++||++|+|+.++.|.+++|++++.|++++.+.+++|+++|.||.++.+.+       +++||++
T Consensus       317 g~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~  396 (450)
T PRK14360        317 GDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDR  396 (450)
T ss_pred             cCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCC
Confidence            333333444444334444444444444444444445555555555555566777777777655432       3555555


Q ss_pred             cEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327          328 VHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       328 ~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +.||.++.      ++ ++.+.+++.|.+|+|+.+++
T Consensus       397 ~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~  433 (450)
T PRK14360        397 SKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLA  433 (450)
T ss_pred             eEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEE
Confidence            55555544      43 56778899999999998776

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.38  E-value=5e-12  Score=111.01  Aligned_cols=107  Identities=26%  Similarity=0.388  Sum_probs=86.2

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-------------cEE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-------------SII  306 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-------------~~i  306 (358)
                      .+++.+.|++.+.|++++.|+++++|++++.||++|+|++++.|. ++.||++|.|+++++|.+             +.|
T Consensus         4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I   83 (262)
T PRK05289          4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI   83 (262)
T ss_pred             ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence            467888899999999999999999999999999999999999998 799999999999999974             789


Q ss_pred             ccCCEECCccEEcCc-------cEECCCcEECCceEEc-CcEEccCcee
Q 018327          307 GWHSTVGQWARVENM-------TILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       307 ~~~~~ig~~~~i~~~-------~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      |++|.|+++++|..+       ++||+++.|++++.+. ++.++.+..+
T Consensus        84 G~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i  132 (262)
T PRK05289         84 GDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVIL  132 (262)
T ss_pred             CCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEE
Confidence            999999998888753       3677776666666654 4444444443

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.38  E-value=4.4e-12  Score=90.32  Aligned_cols=77  Identities=16%  Similarity=0.277  Sum_probs=68.2

Q ss_pred             EECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327          271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK  348 (358)
Q Consensus       271 ~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~  348 (358)
                      +||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+ +++++++.|++++.+.+ +.+.++..+.
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i~   78 (79)
T cd03356           1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVVE   78 (79)
T ss_pred             CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEEC
Confidence            46788888888888888999999999999999999999999999999987 99999999999999975 8877777664

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.38  E-value=5.5e-12  Score=109.40  Aligned_cols=91  Identities=16%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             cCCcEEecceEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECC---CcEEeccEEccCCEECCccE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWAR  317 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~  317 (358)
                      .....+..++.|+++++||+++.|..  +.+||++|+||++|.|     +++|+||.   .+.....+||++|.||.+++
T Consensus       133 ~~~~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~  207 (273)
T PRK11132        133 QNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAK  207 (273)
T ss_pred             hhcceeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCE
Confidence            44555567788888888888888863  4566666666666555     66666653   23334579999999999999


Q ss_pred             EcCccEECCCcEECCceEEcC
Q 018327          318 VENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       318 i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      |.+++.||++++||++++|..
T Consensus       208 Ilggv~IG~~a~IGAgSvV~~  228 (273)
T PRK11132        208 ILGNIEVGRGAKIGAGSVVLQ  228 (273)
T ss_pred             EcCCCEECCCCEECCCCEECc
Confidence            999999999999999999865

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.38  E-value=4.5e-12  Score=121.12  Aligned_cols=36  Identities=11%  Similarity=0.242  Sum_probs=23.3

Q ss_pred             cEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          322 TILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +++|.++.|.+++.|+ ++.++|++.|.+|+|+.+++
T Consensus       405 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~  441 (456)
T PRK14356        405 AFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLA  441 (456)
T ss_pred             cEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEE
Confidence            3333334444444453 67778899999999998765

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.37  E-value=6.1e-12  Score=101.63  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccEE
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      +++++.|+++++|.+++.||++|.|+++++|.    .++||+++.|+++|.|.+     ++|++++.|+.++.+.+ ++|
T Consensus         2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I   80 (153)
T cd04645           2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI   80 (153)
T ss_pred             ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence            45555666666665666677777777777665    258899999988888887     48888998888888876 777


Q ss_pred             CCCcEECCceEEc
Q 018327          325 GEDVHVCDEIYSN  337 (358)
Q Consensus       325 ~~~~~i~~~~~i~  337 (358)
                      ++++.|++++.+.
T Consensus        81 g~~~~Ig~~~~v~   93 (153)
T cd04645          81 GDNCLIGMGAIIL   93 (153)
T ss_pred             CCCCEECCCCEEc
Confidence            7777777666664

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.37  E-value=5.2e-12  Score=89.97  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=69.2

Q ss_pred             EECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327          271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK  348 (358)
Q Consensus       271 ~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~  348 (358)
                      +||++|+|++++.|.++.|++++.|++++.|.++++++++.|+++++|.+ +++++++.|++++.+. ++.+.++..|.
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~ig   78 (79)
T cd05787           1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence            47888999999999999999999999999999999999999999999986 9999999999999996 67777776653

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.37  E-value=9.2e-12  Score=101.96  Aligned_cols=67  Identities=13%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             cEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          270 VAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       270 ~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +.||++|.|+.++.|. ++.|+++|.|+.+|.|.++.||++|.||.++.|.+ +.+++++.+++++.+.
T Consensus        65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~~~v~~~~~v~  132 (167)
T cd00710          65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPGRYVPAGAVIT  132 (167)
T ss_pred             EEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCCCEECCCCEEc
Confidence            3445555555555554 35555555555555555555555555555555533 4555555555444443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.37  E-value=1.9e-11  Score=101.50  Aligned_cols=108  Identities=23%  Similarity=0.333  Sum_probs=76.1

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||+|+|+||      .+|+|++++|+||++|+++.|....- .++|......+.   +..     .+.++..-..
T Consensus         5 ~~~vILAGG~srRm------~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~vv~D~~   69 (192)
T COG0746           5 MTGVILAGGKSRRM------RDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPVVPDEL   69 (192)
T ss_pred             ceEEEecCCccccc------cccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCceeecCC
Confidence            67999999999999      37999999999999999999988644 555555443231   222     2444433222


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHh
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKA  127 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~  127 (358)
                      ... |....++.+++..  .. +.+++++||+.+ ..+ +..+.+...+
T Consensus        70 ~~~-GPL~Gi~~al~~~--~~-~~~~v~~~D~P~i~~~lv~~l~~~~~~  114 (192)
T COG0746          70 PGF-GPLAGILAALRHF--GT-EWVLVLPCDMPFIPPELVERLLSAFKQ  114 (192)
T ss_pred             CCC-CCHHHHHHHHHhC--CC-CeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence            222 9999999999888  44 399999999943 333 4555555443

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.37  E-value=4.3e-12  Score=108.76  Aligned_cols=105  Identities=19%  Similarity=0.321  Sum_probs=80.8

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe-ccEEccCCEECCccEEcC--------cc
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVEN--------MT  322 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------~~  322 (358)
                      +++.++.|++++.|.+++.||++|.|+.++.|. +++||++|.|++++.|. +++||++|.||.++.+.+        ++
T Consensus        82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v  161 (231)
T TIGR03532        82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPV  161 (231)
T ss_pred             ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCe
Confidence            567777888888887788888888888888887 78888888888888886 578888888888877763        35


Q ss_pred             EECCCcEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327          323 ILGEDVHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       323 ~i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +||+++.||+++.      |+ ++.+.+++.|.+++|+++++
T Consensus       162 ~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv  203 (231)
T TIGR03532       162 VIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVV  203 (231)
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE
Confidence            5555555555544      43 66778889999999998775

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.37  E-value=2.5e-11  Score=102.14  Aligned_cols=178  Identities=15%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCC-cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      +.+||||||.|+||+.     ||+|+|++| +|||+|+++.+... +++++|++++  +..    .     ....+....
T Consensus         9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~-----~~~~~v~d~   71 (196)
T PRK00560          9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD--KKF----E-----FNAPFLLEK   71 (196)
T ss_pred             ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc--hhc----c-----cCCcEEecC
Confidence            3589999999999954     899999999 99999999999876 8999988885  111    1     122222211


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      .....|....+..++...  .. +.+++++||..+ +.+ ++.+..   +.+.            .++....+ ++    
T Consensus        72 ~~~~~gpl~gi~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~---~~~~------------~~~~~~~~-~~----  128 (196)
T PRK00560         72 ESDLFSPLFGIINAFLTL--QT-PEIFFISVDTPFVSFESIKKLCG---KENF------------SVTYAKSP-TK----  128 (196)
T ss_pred             CCCCCCcHHHHHHHHHhc--CC-CeEEEEecCcCcCCHHHHHHHHh---cCCC------------CEEEEccC-Cc----
Confidence            223346665666555444  33 489999999943 333 445422   1111            11111111 11    


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~~~  230 (358)
                                 ..--..+++++.+..+......- ..-+..+++...+..+.++  +.+.|+|||+||.++.+.+
T Consensus       129 -----------~~Pl~al~~~~~~~~l~~~l~~~-~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~  191 (196)
T PRK00560        129 -----------EHYLISLWHQSLLNALIYALKTQ-NYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL  191 (196)
T ss_pred             -----------eeeeEEEEcHHHHHHHHHHHHhC-CccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence                       11112578888777664211000 0113344444444444443  4678999999998876543

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.37  E-value=5.9e-12  Score=113.58  Aligned_cols=123  Identities=17%  Similarity=0.248  Sum_probs=97.1

Q ss_pred             eEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECC
Q 018327          213 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR  291 (358)
Q Consensus       213 ~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~  291 (358)
                      .+.-++.|..-+.....++... ......+++.+.+++++.|++++.|+++++|++++.||++|+|+++|.|+ ++.||+
T Consensus        66 ~~~~v~~p~~~~~~~~~~~~~~-~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~  144 (324)
T TIGR01853        66 AALVVKDPYLAFAKVAELFDPP-PKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD  144 (324)
T ss_pred             eEEEECCHHHHHHHHHHHhccc-ccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence            4566677765444333333221 12244578899999999999999999999999999999999999999997 899999


Q ss_pred             CcEECCCcEEe-ccEEccCCEECCccEEcC--------------------ccEECCCcEECCceEE
Q 018327          292 GVRIKKHACIS-SSIIGWHSTVGQWARVEN--------------------MTILGEDVHVCDEIYS  336 (358)
Q Consensus       292 ~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~i~~~~~i  336 (358)
                      +|.|+++++|. +++||++|.|++++.|..                    .++||+++.||+++++
T Consensus       145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I  210 (324)
T TIGR01853       145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI  210 (324)
T ss_pred             CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence            99999999998 589999999999998852                    4788888888888876

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.36  E-value=8.6e-12  Score=100.55  Aligned_cols=92  Identities=18%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             ECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccEE
Q 018327          254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      +.+++.|.++++|.+++.||++|.|++++.|..    .+||++|.|+++|.|.+     ++|++++.|+.++.+.+ ++|
T Consensus         3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I   81 (154)
T cd04650           3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKV   81 (154)
T ss_pred             cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-cEE
Confidence            455566666666666677777777777777763    47888888888888875     68888888888888765 777


Q ss_pred             CCCcEECCceEEc-CcEEccCce
Q 018327          325 GEDVHVCDEIYSN-GGVVLPHKE  346 (358)
Q Consensus       325 ~~~~~i~~~~~i~-~~~v~~~~~  346 (358)
                      |+++.|++++.+. +..+.++..
T Consensus        82 g~~~~Ig~~~~i~~~~~Ig~~~~  104 (154)
T cd04650          82 GNYVIVGMGAILLNGAKIGDHVI  104 (154)
T ss_pred             CCCCEEcCCCEEeCCCEECCCCE
Confidence            7777777777663 444444333

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.35  E-value=9.5e-12  Score=119.48  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             eeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCCcEECCceE------Ec-CcEEccCceeccCC
Q 018327          286 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIY------SN-GGVVLPHKEIKSSI  351 (358)
Q Consensus       286 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~  351 (358)
                      +++|++++.|++.+.+.+++||++|.||.++.+.+       +++||+++.||.++.      |+ ++.+++++.|.+++
T Consensus       357 ~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v  436 (482)
T PRK14352        357 NATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDV  436 (482)
T ss_pred             ccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCC
Confidence            34444555555555555667777788887765542       255666666555544      53 67778899999999


Q ss_pred             CCCccc
Q 018327          352 LKPEIV  357 (358)
Q Consensus       352 ~~~~~~  357 (358)
                      |+++++
T Consensus       437 ~~~~~~  442 (482)
T PRK14352        437 PPGALA  442 (482)
T ss_pred             CCCcEE
Confidence            998764

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=2.4e-12  Score=115.15  Aligned_cols=110  Identities=17%  Similarity=0.345  Sum_probs=97.5

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccE
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR  317 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~  317 (358)
                      -..+.+++.+.+++.||.+++||++|+|. +|.|++++.|-.++.|.+|.|+++|.||+.++++. +.+++++.||..+.
T Consensus       274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVE  352 (460)
T COG1207         274 DVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVE  352 (460)
T ss_pred             ceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEE
Confidence            34467888999999999999999999995 99999999999999999999999999999999997 89999999999999


Q ss_pred             EcCccEECCCcEECCceEEcCcEEccCceeccC
Q 018327          318 VENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS  350 (358)
Q Consensus       318 i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~  350 (358)
                      +.+ +.||+++++++-+.++++.++.++.|.-+
T Consensus       353 vK~-a~ig~gsKa~HLtYlGDA~iG~~~NiGAG  384 (460)
T COG1207         353 VKK-ATIGKGSKAGHLTYLGDAEIGENVNIGAG  384 (460)
T ss_pred             Eec-ccccCCccccceeeeccceecCCceeccc
Confidence            998 88888888888888888777777766543

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.35  E-value=6.9e-12  Score=99.96  Aligned_cols=109  Identities=23%  Similarity=0.267  Sum_probs=78.9

Q ss_pred             cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-----cEEccCCEECCccEEcC
Q 018327          246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVEN  320 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~  320 (358)
                      ..+.++++|.|+|.|-.++.|++++.|++++.|....  ....||.++.|+++|+|..     +.||++|+||.++.|-.
T Consensus        12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG   89 (176)
T COG0663          12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG   89 (176)
T ss_pred             CCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE
Confidence            3455667777777766666666666666666665543  4578999999999999976     58999999999998888


Q ss_pred             ccEECCCcEECCceEEc-------CcEEccCceecc--CCCCCccc
Q 018327          321 MTILGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV  357 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~--~~~~~~~~  357 (358)
                       |.|+++|.||.++++.       ++.+++++.|..  .+|++.++
T Consensus        90 -c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~  134 (176)
T COG0663          90 -CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV  134 (176)
T ss_pred             -eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence             8888888888887763       345555555555  36665554

>PLN02694 serine O-acetyltransferase

Probab=99.35  E-value=5.1e-12  Score=109.50  Aligned_cols=86  Identities=22%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             cceEECCCCEECCCcEECC--CcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECC
Q 018327          250 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      .++.|++++.||+++.|..  +++||++|+||++|.|. +++++..   +..+..++++||++|.||.+++|.+++.||+
T Consensus       159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd  235 (294)
T PLN02694        159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGE  235 (294)
T ss_pred             eeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECC
Confidence            3567777777777777764  67788888888877775 3444432   3445567789999999999999988899999


Q ss_pred             CcEECCceEEcC
Q 018327          327 DVHVCDEIYSNG  338 (358)
Q Consensus       327 ~~~i~~~~~i~~  338 (358)
                      +++||++++|..
T Consensus       236 ~a~IGAgSVV~k  247 (294)
T PLN02694        236 GAKIGAGSVVLI  247 (294)
T ss_pred             CCEECCCCEECC
Confidence            999999999864

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.34  E-value=1.5e-11  Score=101.64  Aligned_cols=52  Identities=13%  Similarity=0.143  Sum_probs=25.3

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC-------------cEEccCceeccCCCCCc
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-------------GVVLPHKEIKSSILKPE  355 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-------------~~v~~~~~i~~~~~~~~  355 (358)
                      +.|..+|.||.+|.+.+++.++.++.||+.+.++|             +.++..+.|.+|+|+-.
T Consensus       119 ~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~  183 (260)
T COG1043         119 AHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYV  183 (260)
T ss_pred             eeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeE
Confidence            34444555555555555444444444444444432             23344455566666543

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.34  E-value=1.4e-11  Score=117.88  Aligned_cols=104  Identities=13%  Similarity=0.274  Sum_probs=57.7

Q ss_pred             CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCC
Q 018327          255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGED  327 (358)
Q Consensus       255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~  327 (358)
                      ++++.|++++.|.++++||++|+|+.++.|.+++|++++.+++.+.+.+++||++|.||.++.+.+       ++.||++
T Consensus       320 g~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~  399 (458)
T PRK14354        320 GDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDN  399 (458)
T ss_pred             CCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCC
Confidence            333333344444334444444444444444444455555555555555556666666665544422       2444444


Q ss_pred             cEECCc------eEEc-CcEEccCceeccCCCCCcccC
Q 018327          328 VHVCDE------IYSN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       328 ~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      +.+|.+      +.|+ ++.+++++.|.+++|++++++
T Consensus       400 ~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~  437 (458)
T PRK14354        400 AFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAI  437 (458)
T ss_pred             cEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEE
Confidence            444444      4453 677899999999999998763

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=8.8e-12  Score=118.83  Aligned_cols=57  Identities=11%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             EeccEEccCCEECCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCCCCCccc
Q 018327          301 ISSSIIGWHSTVGQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       301 i~~~~i~~~~~ig~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +.+++||++|.||.++.+.       .+++||+++.||.+      +.|+ ++.+++++.|.+++|+++++
T Consensus       356 ~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~  426 (448)
T PRK14357        356 LGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLA  426 (448)
T ss_pred             ccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEE
Confidence            3344566666666554332       12445555554444      4553 67778888999999998775

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.32  E-value=1.2e-11  Score=118.35  Aligned_cols=79  Identities=18%  Similarity=0.347  Sum_probs=63.8

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARV  318 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i  318 (358)
                      ..+.+++.|.+++.|++++.|+++|+| .+++|+++|.|++++.|.+++|++++.|++++.+.. ++|++++.|+.++.|
T Consensus       277 ~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i  355 (481)
T PRK14358        277 VTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET  355 (481)
T ss_pred             CEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence            345667777777778888888888888 478899999999999998889999999999988874 788888888886664


Q ss_pred             c
Q 018327          319 E  319 (358)
Q Consensus       319 ~  319 (358)
                      .
T Consensus       356 ~  356 (481)
T PRK14358        356 K  356 (481)
T ss_pred             C
Confidence            3

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.31  E-value=1.9e-11  Score=99.27  Aligned_cols=87  Identities=22%  Similarity=0.333  Sum_probs=57.8

Q ss_pred             EEecceEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECCC---cEEeccEEccCCEECCccEEcCc
Q 018327          247 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTVGQWARVENM  321 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~ig~~~~i~~~  321 (358)
                      .+..++.|++++.|++++.|..  +++|+++|+||++|.|     +++|+|+..   .....++||++|+||++++|.++
T Consensus        57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~  131 (162)
T TIGR01172        57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN  131 (162)
T ss_pred             heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC
Confidence            3444566666666666666643  3566666666666655     333444322   11334689999999999999998


Q ss_pred             cEECCCcEECCceEEcC
Q 018327          322 TILGEDVHVCDEIYSNG  338 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~~  338 (358)
                      ++||+++.|++++++..
T Consensus       132 v~IG~~~~Iga~s~V~~  148 (162)
T TIGR01172       132 IEVGENAKIGANSVVLK  148 (162)
T ss_pred             cEECCCCEECCCCEECC
Confidence            99999999998887764

Cysteine biosynthesis

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.31  E-value=9.9e-11  Score=97.94  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             cceEECCCCEECCCcEE----CCCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEec-------------------
Q 018327          250 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-------------------  303 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~-------------------  303 (358)
                      .+..+|+++.++.++.+    .+...||++|.|++++.|.   ++.||++|.|++++.|.+                   
T Consensus        42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~  121 (192)
T PRK09677         42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP  121 (192)
T ss_pred             CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence            45556777777777766    3467788888888888876   578888888888887764                   


Q ss_pred             ---------cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 ---------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ---------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                               +.|+++|+||.++.|.+++.||+++.|++++.+..
T Consensus       122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK  165 (192)
T ss_pred             hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence                     35677777777777777777777777777777654

>PRK10502 putative acyl transferase; Provisional

Probab=99.30  E-value=2.1e-11  Score=101.08  Aligned_cols=70  Identities=14%  Similarity=0.076  Sum_probs=47.6

Q ss_pred             CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEe----------------ccEEccCCEECCccEEcCccEECCCcE
Q 018327          269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----------------SSIIGWHSTVGQWARVENMTILGEDVH  329 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~~ig~~~~i~~~~~i~~~~~  329 (358)
                      +..||++|.|++++.|.   .+.||++|.|++++.|.                ...||++|+||.++.|.+++.||++++
T Consensus        71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v  150 (182)
T PRK10502         71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV  150 (182)
T ss_pred             eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence            45555666666666554   35667777777666663                246788888888888877788888887


Q ss_pred             ECCceEEcC
Q 018327          330 VCDEIYSNG  338 (358)
Q Consensus       330 i~~~~~i~~  338 (358)
                      |++++.+.+
T Consensus       151 Iga~svV~~  159 (182)
T PRK10502        151 VGARSSVFK  159 (182)
T ss_pred             ECCCCEEec
Confidence            777777643

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.30  E-value=5.7e-11  Score=102.90  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCE-ECCCcE---Ee-eeEECCCcEECCCcEEec---------cEEcc
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACISS---------SIIGW  308 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-ig~~~~---i~-~~~i~~~~~i~~~~~i~~---------~~i~~  308 (358)
                      +.++.|.+.++|.+++.+|+|++|.++++|+.++. +|++++   |. .++|+++|.||.+|+|..         +.||+
T Consensus       176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe  255 (341)
T TIGR03536       176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGE  255 (341)
T ss_pred             cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECC
Confidence            56666666666667777777776666666666666 565555   55 566666777666666633         35777


Q ss_pred             CCEECCccEEcCccEECCCcEECCceEEc
Q 018327          309 HSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +|.||.++.|  +..||++|+||+|+++.
T Consensus       256 ~~lIGagA~I--GI~IGd~~iIGAGavVt  282 (341)
T TIGR03536       256 GCLLGANAGI--GIPLGDRCTVEAGLYIT  282 (341)
T ss_pred             CcEECCCCEE--eeEECCCCEECCCCEEe
Confidence            8888888887  58888888888888774

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.28  E-value=9.8e-12  Score=100.20  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             EecceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCcc
Q 018327          248 IVGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMT  322 (358)
Q Consensus       248 i~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~  322 (358)
                      +...+.|+|+|+||++.+|.  .+.+||+.+.||++|.|     .++|+||....   -+.-.||+++.||++++|.++.
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I  138 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNI  138 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcce
Confidence            34567777888888887776  35678888888887777     44555544222   2336999999999999999999


Q ss_pred             EECCCcEECCceEEcC
Q 018327          323 ILGEDVHVCDEIYSNG  338 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~~  338 (358)
                      .||++++||+++++..
T Consensus       139 ~IGd~akIGA~sVVlk  154 (194)
T COG1045         139 EIGDNAKIGAGSVVLK  154 (194)
T ss_pred             EECCCCEECCCceEcc
Confidence            9999999999999864

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.27  E-value=4.1e-11  Score=85.43  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             ECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327          272 VGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK  348 (358)
Q Consensus       272 ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~  348 (358)
                      +++++.|++++.|. +++|+++|.|+++|.|.++++++++.|++++.+.+ +++++++.|++++.+.+ ..++++..|+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEecCEEECCceEEC
Confidence            34555555555554 56667778888888888888888888888888877 78888888888877754 5556655543

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.27  E-value=6.8e-11  Score=98.86  Aligned_cols=52  Identities=15%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             eEECCCcEECCCcEEec-------------------cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          287 CTVMRGVRIKKHACISS-------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~~-------------------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ..||++|.|+++|.|..                   .+||++|+||.++.|.+++.||++++|++++++..
T Consensus        96 I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k  166 (203)
T PRK09527         96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK  166 (203)
T ss_pred             EEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            45666666666666641                   46888888888888888888888888888887764

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.27  E-value=2.1e-11  Score=102.91  Aligned_cols=100  Identities=17%  Similarity=0.277  Sum_probs=87.6

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccC
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWH  309 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~  309 (358)
                      .++.|++.++-.++|++++.+.++++|.-|+.++.+|.|..++.++ -.+||.||.||.++.|.+         .+|+++
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn  188 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN  188 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence            5577888888889999999888888888889999999999988888 578999999999998866         379999


Q ss_pred             CEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          310 STVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      |.||.|+.+..|+++|++|+|++|++|..+
T Consensus       189 cliGAns~~veGV~vGdg~VV~aGv~I~~~  218 (271)
T COG2171         189 CLIGANSEVVEGVIVGDGCVVAAGVFITQD  218 (271)
T ss_pred             cEeccccceEeeeEeCCCcEEecceEEeCC
Confidence            999999988888999999999999998643

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.26  E-value=5.3e-11  Score=88.45  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      .+.+++.+.++++|++++.|++++.|.+++.||++|+||.  .|.+|+|++++.|++++.|.+++|++++.||+++...+
T Consensus        19 ~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~   96 (101)
T cd05635          19 VIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD   96 (101)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence            3556677777888888888888888887888888888875  56799999999999999999999999999999988775

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.26  E-value=4.3e-11  Score=111.63  Aligned_cols=80  Identities=21%  Similarity=0.352  Sum_probs=69.7

Q ss_pred             CEECCCcEEC---CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc----cEECCCcEE
Q 018327          258 AQIGEGCLIG---PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHV  330 (358)
Q Consensus       258 ~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~----~~i~~~~~i  330 (358)
                      +.|+++|.|.   .+|+||++|.||++|+|.+|+|+++|.|+++|+|.+|+|++++.|+.++.+.++    .+||++++|
T Consensus       294 ~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~  373 (380)
T PRK05293        294 SLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVI  373 (380)
T ss_pred             CEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCC
Confidence            3444444443   379999999999999999999999999999999999999999999999999886    789999999


Q ss_pred             CCceEEc
Q 018327          331 CDEIYSN  337 (358)
Q Consensus       331 ~~~~~i~  337 (358)
                      +++++++
T Consensus       374 ~~~~~~~  380 (380)
T PRK05293        374 GVGTVIG  380 (380)
T ss_pred             CCCcEeC
Confidence            8887763

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.26  E-value=6.9e-11  Score=97.61  Aligned_cols=87  Identities=16%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-------------------ccE
Q 018327          245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------------SSI  305 (358)
Q Consensus       245 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-------------------~~~  305 (358)
                      ++.+.++..+    .+|.++.|++++.|+.+|+|++.+.|   .||++|.|++++.|.                   .+.
T Consensus        59 ~~~i~~~~~~----~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~  131 (183)
T PRK10092         59 EAYIEPTFRC----DYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVT  131 (183)
T ss_pred             CEEEeCCEEE----eecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeE
Confidence            4445554433    34566666666666666666666544   677777777777774                   245


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ||++|+||.++.|.+++.||++++|++++++..
T Consensus       132 IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             ECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence            666777777776666666666666666666643

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.25  E-value=6.3e-11  Score=102.14  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCc-EECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEcc
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW  308 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~  308 (358)
                      .++.+++.+.-.+++++++.|.++++|..++ .||++ .|  +++|. +|+||++|.|+.++.|.+         +.||+
T Consensus       154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe  230 (319)
T TIGR03535       154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE  230 (319)
T ss_pred             cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence            3456777778888888888888888888888 68885 66  47788 799999999999999555         68999


Q ss_pred             CCEECCccEEcCccEECCCcEECCceEEc
Q 018327          309 HSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +|.||.++.|  +..||++|+||+|+++.
T Consensus       231 ~~~IGagA~I--GI~IGd~~VVGAGaVVt  257 (319)
T TIGR03535       231 RCLLGANSGL--GISLGDDCVVEAGLYVT  257 (319)
T ss_pred             CcEECCCCEE--CeEECCCCEECCCCEEe
Confidence            9999999999  69999999999999885

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.25  E-value=6.2e-11  Score=88.89  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      .+.+++.+. ++.|++++.|+ ++.|. +++++++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+
T Consensus         3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~   79 (104)
T cd04651           3 YIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG   79 (104)
T ss_pred             eecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence            456777784 68899999998 88885 9999999999999999999999999999999999999999999999998887


Q ss_pred             c
Q 018327          321 M  321 (358)
Q Consensus       321 ~  321 (358)
                      .
T Consensus        80 ~   80 (104)
T cd04651          80 D   80 (104)
T ss_pred             C
Confidence            4

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.25  E-value=1e-10  Score=101.53  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=41.1

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECC--------CcEECCCcEEec-cEEccCCE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR--------GVRIKKHACISS-SIIGWHST  311 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~--------~~~i~~~~~i~~-~~i~~~~~  311 (358)
                      +.+++.+. +.+++.++.|+++++|..++.||++|.||++|.|. ++.|+.        ++.|+++|.|.. +.|.+++.
T Consensus       118 Ig~gavI~-p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~  196 (272)
T PRK11830        118 IAPNVVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVI  196 (272)
T ss_pred             ECCCcEEE-EEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCE
Confidence            34444444 23344444555555555555555555555555554 232221        234444444433 34444445


Q ss_pred             ECCccEEcCccEECCCcEEC
Q 018327          312 VGQWARVENMTILGEDVHVC  331 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~  331 (358)
                      ||+++.|..+++|+.++.|+
T Consensus       197 IGdgavIgag~vV~~gt~I~  216 (272)
T PRK11830        197 VEEGSVLGMGVFLGQSTKIY  216 (272)
T ss_pred             ECCCCEEcCCCEEcCCeEEC
Confidence            55555555555555555555

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.25  E-value=2.3e-10  Score=103.76  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=76.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      +.+||||||+|+||+     .||+|+|+.|+||++|+++.+... +++++|++++..  . .+..    ...+++... .
T Consensus       161 i~~IILAGGkSsRMG-----~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~-~~~~----~~~v~~I~D-~  226 (346)
T PRK14500        161 LYGLVLTGGKSRRMG-----KDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--W-QGTP----LENLPTLPD-R  226 (346)
T ss_pred             ceEEEEeccccccCC-----CCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--h-hhcc----ccCCeEEeC-C
Confidence            358999999999995     399999999999999999988764 888988876431  1 1111    112333222 2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccC-HHHHHHHH
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYP-FAEMIEFH  125 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~-l~~~~~~~  125 (358)
                      ....|...+++.++...  ..+ .++++.||+. .+.+ +..+++.+
T Consensus       227 ~~~~GPlagI~aaL~~~--~~~-~~lVl~cDmP~l~~~~l~~L~~~~  270 (346)
T PRK14500        227 GESVGPISGILTALQSY--PGV-NWLVVACDLAYLNSETVEKLLAHY  270 (346)
T ss_pred             CCCCChHHHHHHHHHhC--CCC-CEEEEECCcCCCCHHHHHHHHHhh
Confidence            33469999999999876  333 7899999994 3333 66766654

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.24  E-value=2.3e-10  Score=105.73  Aligned_cols=107  Identities=20%  Similarity=0.361  Sum_probs=75.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||+|+||+.     +|+|+|++|+|||+|+++.+... +++++|+++....  . .+..    +++.+... .
T Consensus       175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~d-~  240 (369)
T PRK14490        175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLITD-S  240 (369)
T ss_pred             ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEeC-C
Confidence            3689999999999953     89999999999999999999764 7888887765321  1 1221    24555432 2


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-cc-CHHHHHHH
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EY-PFAEMIEF  124 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~-~l~~~~~~  124 (358)
                      ....|...++..+.+..  .. +.++++.||+.+ .. .++.+++.
T Consensus       241 ~~~~Gpl~gi~~al~~~--~~-~~~lv~~~DmP~i~~~~i~~L~~~  283 (369)
T PRK14490        241 YLDIGPLGGLLSAQRHH--PD-AAWLVVACDLPFLDEATLQQLVEG  283 (369)
T ss_pred             CCCCCcHHHHHHHHHhC--CC-CcEEEEeCCcCCCCHHHHHHHHHh
Confidence            23457778888887665  33 389999999943 32 35666654

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=99.24  E-value=1.2e-11  Score=108.33  Aligned_cols=166  Identities=18%  Similarity=0.219  Sum_probs=112.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------CCCEEEEEeccChHHHHHHHHhhhhc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------GVTEVVLAINYQPEVMLNFLKEFEAK   70 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------gi~~i~vv~~~~~~~i~~~l~~~~~~   70 (358)
                      -+++||||.|+||+.   +.||+|+|++   |+|+|++.++++.+.        ++..+++...+.++++++|+++....
T Consensus         2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~   78 (266)
T cd04180           2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK   78 (266)
T ss_pred             EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence            378999999999964   8999999999   999999999999862        36666666666778899999985412


Q ss_pred             cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---------cCCCC
Q 018327           71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---------DEPSK  141 (358)
Q Consensus        71 ~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~  141 (358)
                      .+..+.+.....|..+.++.....+.   ...+.....+||.+.......+++.|.+++.....+.         .+|..
T Consensus        79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~  155 (266)
T cd04180          79 NSYVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF  155 (266)
T ss_pred             CCceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence            23333344444455555544321111   1112556778888887777789999988877644443         46777


Q ss_pred             eeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEECh
Q 018327          142 YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP  178 (358)
Q Consensus       142 ~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~  178 (358)
                      +|++..+.. .....+.+|+...    ...|+.+...
T Consensus       156 lG~~~~~~~-~~~~kvv~K~~~d----~k~G~~~~~~  187 (266)
T cd04180         156 IGIAIQNRK-AINQKVVPKTRNE----ESGGYRIANI  187 (266)
T ss_pred             HHHHHHcCC-CEEEEEEECCCCC----CeEEEEEEec
Confidence            787776654 6777888886532    3456655443

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.23  E-value=9.5e-11  Score=87.58  Aligned_cols=82  Identities=20%  Similarity=0.370  Sum_probs=59.9

Q ss_pred             eEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCccEECC
Q 018327          252 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      +.|++++.|++++.|..  +++|++++.||++|.|     ++++.|++++.   +.+++|++++.|+.++.+.+++.|++
T Consensus         3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~   77 (101)
T cd03354           3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGD   77 (101)
T ss_pred             eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECC
Confidence            45556666666666653  4456666666666554     66666666664   66789999999999999999899999


Q ss_pred             CcEECCceEEcC
Q 018327          327 DVHVCDEIYSNG  338 (358)
Q Consensus       327 ~~~i~~~~~i~~  338 (358)
                      ++.|++++.+..
T Consensus        78 ~~~i~~~~~i~~   89 (101)
T cd03354          78 NVKIGANAVVTK   89 (101)
T ss_pred             CCEECCCCEECc
Confidence            999988888865

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.22  E-value=2.9e-10  Score=92.69  Aligned_cols=202  Identities=19%  Similarity=0.207  Sum_probs=130.1

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc-
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE-   80 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~-   80 (358)
                      |+|+|.|.++|...      |-+.+++|+|||.|+|+.+..++ +++|+|-+..  +++.+.-.+    +|..+.+... 
T Consensus         6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs--~~Il~~A~~----ygak~~~~Rp~   73 (228)
T COG1083           6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS--EEILEEAKK----YGAKVFLKRPK   73 (228)
T ss_pred             EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc--HHHHHHHHH----hCccccccCCh
Confidence            89999999999855      99999999999999999999999 7777665543  556555444    3555532221 


Q ss_pred             ---CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCC--CCeeeEEEcCCCCc
Q 018327           81 ---TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEP--SKYGVVVMEESTGK  153 (358)
Q Consensus        81 ---~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~  153 (358)
                         ...+.+.+++.++.+..+.. ++.++++.+-.  ....++++..+.+.+++.+..+.+...  ..|--.. +.+ |+
T Consensus        74 ~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~-~~~-~~  150 (228)
T COG1083          74 ELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFS-LNN-GE  150 (228)
T ss_pred             hhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHH-hcC-Cc
Confidence               11234446677888777543 32467776666  556679999999998886665555111  1111111 222 67


Q ss_pred             EEEEeecCC--CCC-----CCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHH
Q 018327          154 VEKFVEKPK--LFV-----GNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYIT  225 (358)
Q Consensus       154 v~~~~ek~~--~~~-----~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~  225 (358)
                      +..+.+.|.  .++     ....+..+|+++++.|..-.   ..|          ..+...|.++ ....|+|+..||..
T Consensus       151 ~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~i  217 (228)
T COG1083         151 VKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEI  217 (228)
T ss_pred             eeecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHH
Confidence            777766552  222     22356788999988876521   111          1233344443 35889999999999


Q ss_pred             HHHHHHH
Q 018327          226 GLRLYLD  232 (358)
Q Consensus       226 a~~~~l~  232 (358)
                      +...+..
T Consensus       218 ae~l~~~  224 (228)
T COG1083         218 AENLIFL  224 (228)
T ss_pred             HHHHhhh
Confidence            9877654

>PLN02357 serine acetyltransferase

Probab=99.21  E-value=5.4e-11  Score=106.10  Aligned_cols=85  Identities=22%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             ceEECCCCEECCCcEECC--CcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCC
Q 018327          251 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED  327 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~  327 (358)
                      .+.|++++.||+|+.|..  +++||++|+||++|.|. +++|+..   +......+++||++|.||.+++|.+++.||++
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdg  302 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEG  302 (360)
T ss_pred             ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCC
Confidence            356666666666666653  46666666666666664 3333332   11122345788889999999888888889999


Q ss_pred             cEECCceEEcC
Q 018327          328 VHVCDEIYSNG  338 (358)
Q Consensus       328 ~~i~~~~~i~~  338 (358)
                      ++||++++|..
T Consensus       303 a~IGAgSVV~~  313 (360)
T PLN02357        303 AKIGAGSVVLK  313 (360)
T ss_pred             CEECCCCEECc
Confidence            99988888764

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.21  E-value=1.3e-10  Score=100.74  Aligned_cols=31  Identities=3%  Similarity=0.069  Sum_probs=14.2

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      |.||.++.|  +..|+.+|+||.++.|-+++.|
T Consensus       257 ~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       257 CLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             cEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            344444444  4444444444444444444444

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.20  E-value=1.9e-10  Score=87.27  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=66.2

Q ss_pred             eEECCCCEECCCcEECC--CcEECCCCEECCCcEEeee---EECCCcEECCCcEEeccEEccCCEECCccEEcCccEECC
Q 018327          252 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      ..|++++.|++++.|..  ++.||++|.|+++|.|.++   .++.++.+.......+++|+++|.|+.++.+.+++.|++
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~   81 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD   81 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence            56788888888888876  7889999999999988743   344444444445566678888888888888887788888


Q ss_pred             CcEECCceEEc
Q 018327          327 DVHVCDEIYSN  337 (358)
Q Consensus       327 ~~~i~~~~~i~  337 (358)
                      ++.+++++.+.
T Consensus        82 ~~~i~~~~~v~   92 (109)
T cd04647          82 GAVVGAGSVVT   92 (109)
T ss_pred             CCEECCCCEEe
Confidence            88888888877

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.19  E-value=3.2e-10  Score=93.04  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=26.5

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +.||++|+||.++.|.+++.||++++||+++++.+
T Consensus       119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~  153 (169)
T cd03357         119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK  153 (169)
T ss_pred             cEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            57777777777777777777777777777777765

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10191 putative acyl transferase; Provisional

Probab=99.19  E-value=1.5e-10  Score=91.55  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             EecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEE--eccEEccCCEECCccEEcCccEEC
Q 018327          248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI--SSSIIGWHSTVGQWARVENMTILG  325 (358)
Q Consensus       248 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i--~~~~i~~~~~ig~~~~i~~~~~i~  325 (358)
                      |.+.+.+++++.|+++    .+++|+++++||++|.|     +++|+||+.+..  ..+.||++|+||+++.+.+++.||
T Consensus        44 I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG  114 (146)
T PRK10191         44 IQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIG  114 (146)
T ss_pred             cCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEEC
Confidence            3334444444444442    13445555555555444     333333332222  225788888888888888888888


Q ss_pred             CCcEECCceEEcCc
Q 018327          326 EDVHVCDEIYSNGG  339 (358)
Q Consensus       326 ~~~~i~~~~~i~~~  339 (358)
                      +++.|++++.+.++
T Consensus       115 ~~~~Igags~V~~d  128 (146)
T PRK10191        115 NNVTVGAGSVVLDS  128 (146)
T ss_pred             CCCEECCCCEECCc
Confidence            88888888887654

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.19  E-value=4e-10  Score=91.66  Aligned_cols=92  Identities=16%  Similarity=0.267  Sum_probs=59.1

Q ss_pred             cccCCcEEecc---eEECCCCEECCCcEECC------------CcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccE
Q 018327          241 KLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       241 ~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~  305 (358)
                      .+.+++.+.++   +.||+++.|+++++|.+            ++.||+++.|++++.+.++.|++++.|++++.|..  
T Consensus        29 ~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~--  106 (161)
T cd03359          29 IIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGR--  106 (161)
T ss_pred             EEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcC--
Confidence            34566666654   57788888888887763            34788888888888887777777777777665543  


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                         ++.|++++.+..++++..+++|++.+.+.
T Consensus       107 ---~~~I~~~~~i~~g~~V~~~~~i~~~~vv~  135 (161)
T cd03359         107 ---RCIIKDCVKILDGTVVPPDTVIPPYSVVS  135 (161)
T ss_pred             ---CCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence               44444444444445555555555555554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.18  E-value=1.4e-10  Score=110.14  Aligned_cols=75  Identities=15%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             EECCCcEEeeeEECCCcEECCCcEEec--------cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          277 VVESGVRLSRCTVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       277 ~ig~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      +||..+.|.+|+||++|.||+++.+.+        ++||++|.||.++.|.+++.||+++.||+++.+.+. +.++..+.
T Consensus       333 ~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~-v~~~~~~~  411 (430)
T PRK14359        333 KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD-VPKGSLAI  411 (430)
T ss_pred             cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc-cCCCcEEE
Confidence            555666677889999999999988863        689999999999999999999999999999999764 44555544


Q ss_pred             cCCC
Q 018327          349 SSIL  352 (358)
Q Consensus       349 ~~~~  352 (358)
                      +..|
T Consensus       412 ~~~~  415 (430)
T PRK14359        412 SRAP  415 (430)
T ss_pred             eccC
Confidence            4333

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.14  E-value=3.7e-10  Score=79.98  Aligned_cols=76  Identities=17%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  332 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~  332 (358)
                      .|++++.|+++++|.+++.||++|.|++++.|.+.....        ......|+++++|+.++.+.+++.|++++.|++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~   73 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA   73 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence            455566666666665556666666666666655432221        223367777777777777777777888877777


Q ss_pred             ceEE
Q 018327          333 EIYS  336 (358)
Q Consensus       333 ~~~i  336 (358)
                      ++.+
T Consensus        74 ~s~v   77 (78)
T cd00208          74 GAVV   77 (78)
T ss_pred             CcEe
Confidence            7765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PLN02739 serine acetyltransferase

Probab=99.14  E-value=2.2e-10  Score=101.35  Aligned_cols=84  Identities=20%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEE---eccEEccCCEECCccEEcCccEE
Q 018327          250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI---SSSIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      -++.|++++.||+++.|.  .+++||++|+||++|.|     .++|+||....-   ....||++|.||.+++|.+++.|
T Consensus       204 ~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I-----~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~I  278 (355)
T PLN02739        204 FGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSI-----LHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISI  278 (355)
T ss_pred             hCcccCCCccccCceEEecCCceEECCCCEECCCCEE-----cCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEE
Confidence            345566666666666664  25566666666665555     444444422111   23688999999999999888999


Q ss_pred             CCCcEECCceEEcC
Q 018327          325 GEDVHVCDEIYSNG  338 (358)
Q Consensus       325 ~~~~~i~~~~~i~~  338 (358)
                      |++++||++++|..
T Consensus       279 Gd~aiIGAGSVV~k  292 (355)
T PLN02739        279 GAGAMVAAGSLVLK  292 (355)
T ss_pred             CCCCEECCCCEECC
Confidence            99999999988764

>PRK10191 putative acyl transferase; Provisional

Probab=99.13  E-value=5.8e-10  Score=88.22  Aligned_cols=95  Identities=18%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             cccccCCcEEecceEECC--CCEECCCcEECCCcEECCCCEECCCcEEe--eeEECCCcEECCCcEEec-cEEccCCEEC
Q 018327          239 SLKLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACISS-SIIGWHSTVG  313 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~ig~~~~i~--~~~i~~~~~i~~~~~i~~-~~i~~~~~ig  313 (358)
                      ...+++++.+.+++.|++  ++.|++++.|++++.|+++|+||+.....  .+.||++|.|+.++.+.+ +.||+++.||
T Consensus        41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig  120 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG  120 (146)
T ss_pred             CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence            344677788888888888  57888888888888888888888765443  457888888888888876 7888888888


Q ss_pred             CccEEcCccEECCCcEECCce
Q 018327          314 QWARVENMTILGEDVHVCDEI  334 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~  334 (358)
                      +++.+.+ .+-.....+|..+
T Consensus       121 ags~V~~-dv~~~~~v~G~pA  140 (146)
T PRK10191        121 AGSVVLD-SVPDNALVVGEKA  140 (146)
T ss_pred             CCCEECC-ccCCCcEEEccCc
Confidence            8877777 4444444444444

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.12  E-value=5e-10  Score=91.00  Aligned_cols=76  Identities=25%  Similarity=0.322  Sum_probs=33.8

Q ss_pred             CcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCEE
Q 018327          245 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHSTV  312 (358)
Q Consensus       245 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~i  312 (358)
                      +..+.+.+.|++++.|+.  +++|++++.||++|.|+.++.|+.         ++|+++|.|+.++.|.+ ++||++|.|
T Consensus        61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I  140 (162)
T TIGR01172        61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI  140 (162)
T ss_pred             CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence            344444444444444432  244444444444444444444441         24455555555444443 344444444


Q ss_pred             CCccEEcC
Q 018327          313 GQWARVEN  320 (358)
Q Consensus       313 g~~~~i~~  320 (358)
                      |+++.+.+
T Consensus       141 ga~s~V~~  148 (162)
T TIGR01172       141 GANSVVLK  148 (162)
T ss_pred             CCCCEECC
Confidence            44444433

Cysteine biosynthesis

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.11  E-value=3.6e-10  Score=106.72  Aligned_cols=79  Identities=10%  Similarity=0.277  Sum_probs=68.9

Q ss_pred             CCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEcc-------------------CCEECCcc
Q 018327          256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW-------------------HSTVGQWA  316 (358)
Q Consensus       256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~~~ig~~~  316 (358)
                      +.+.+ .++.+. ++.||++|.| +++.|.+|+||++|.|+++|.|.+|+|++                   ++.||++|
T Consensus       297 ~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~  373 (429)
T PRK02862        297 PPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGT  373 (429)
T ss_pred             CCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCC
Confidence            33444 355664 7999999999 89999999999999999999999999976                   69999999


Q ss_pred             EEcCccEECCCcEECCceEEcC
Q 018327          317 RVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .|.+ ++|++++.||+++.+.+
T Consensus       374 ~i~~-~ii~~~~~i~~~~~~~~  394 (429)
T PRK02862        374 TIKR-AIIDKNARIGNNVRIVN  394 (429)
T ss_pred             EEEE-EEECCCcEECCCcEEec
Confidence            9988 99999999999999953

>PRK10502 putative acyl transferase; Provisional

Probab=99.10  E-value=6.7e-10  Score=92.10  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             eEECCCCEECCCcEEC--CCcEECCCCEECCCcEEe
Q 018327          252 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS  285 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~  285 (358)
                      ..||+++.|++++.|.  .++.||++|.|++++.|.
T Consensus        72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~  107 (182)
T PRK10502         72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC  107 (182)
T ss_pred             EEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence            4456666666666664  245666666666666653

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.09  E-value=6.1e-10  Score=96.77  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=44.3

Q ss_pred             ccCCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccC
Q 018327          242 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH  309 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~  309 (358)
                      +..+..|++.+.||+++.|+.  +++|++++.||++|.|..++.|++         ..|+++|.||.+|.|.+ +.||++
T Consensus       138 ~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~  217 (273)
T PRK11132        138 VAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRG  217 (273)
T ss_pred             eeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCC
Confidence            345555666666666666653  456666677777777777766652         35555666655555544 344444


Q ss_pred             CEECCccEEc
Q 018327          310 STVGQWARVE  319 (358)
Q Consensus       310 ~~ig~~~~i~  319 (358)
                      |.||+++.+.
T Consensus       218 a~IGAgSvV~  227 (273)
T PRK11132        218 AKIGAGSVVL  227 (273)
T ss_pred             CEECCCCEEC
Confidence            4444444443

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.08  E-value=9.2e-10  Score=104.23  Aligned_cols=79  Identities=18%  Similarity=0.347  Sum_probs=66.7

Q ss_pred             CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEcc----------------C---CEECCc
Q 018327          255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQW  315 (358)
Q Consensus       255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~ig~~  315 (358)
                      -+++.+ .++.+. +|+|+++|+|+ +|.|.+|+|+++|.|+++|+|.+++++.                +   +.||++
T Consensus       303 ~~~~~~-~~~~i~-~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~  379 (436)
T PLN02241        303 LPPSKI-EDCRIT-DSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGEN  379 (436)
T ss_pred             CCCcEe-cCCeEE-EeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCC
Confidence            355666 466675 49999999999 9999999999999999999999987755                3   389999


Q ss_pred             cEEcCccEECCCcEECCceEEc
Q 018327          316 ARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       316 ~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +.+.+ ++|++++.||+++.+.
T Consensus       380 ~~i~~-~vI~~~v~Ig~~~~i~  400 (436)
T PLN02241        380 TKIRN-AIIDKNARIGKNVVII  400 (436)
T ss_pred             CEEcc-eEecCCCEECCCcEEe
Confidence            99986 8999999999988885

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.08  E-value=2.2e-09  Score=80.96  Aligned_cols=87  Identities=23%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             ceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-ccEEccCCEECCccEEcCccEECCC
Q 018327          251 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGED  327 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~i~~~  327 (358)
                      +..||+++.|+++++|.  +...||++|.|++++.|...  .++........+. ...|+++|+||.++.|.+++.||++
T Consensus         3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~   80 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG   80 (107)
T ss_pred             eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence            45566666666666664  34666777777766666421  0111111222222 3688888888888888888888888


Q ss_pred             cEECCceEEcCc
Q 018327          328 VHVCDEIYSNGG  339 (358)
Q Consensus       328 ~~i~~~~~i~~~  339 (358)
                      +.|++++.+.+.
T Consensus        81 ~~i~~gs~v~~~   92 (107)
T cd05825          81 AVVGARSVVVRD   92 (107)
T ss_pred             CEECCCCEEeCc
Confidence            888888888653

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.05  E-value=5e-09  Score=87.69  Aligned_cols=39  Identities=18%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             cCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          319 ENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++++.||.++.|.+++.|+ ++.+++++.|.+++|+++++
T Consensus       134 g~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~  173 (192)
T PRK09677        134 GQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVI  173 (192)
T ss_pred             cCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEE
Confidence            3344444445555555553 56667777777788777654

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.05  E-value=2.1e-09  Score=89.99  Aligned_cols=15  Identities=27%  Similarity=0.585  Sum_probs=6.9

Q ss_pred             cEECCCCEECCCcEE
Q 018327          270 VAVGPGCVVESGVRL  284 (358)
Q Consensus       270 ~~ig~~~~ig~~~~i  284 (358)
                      +.||++|.|+++|.|
T Consensus        96 I~IGd~v~Ig~~v~I  110 (203)
T PRK09527         96 VTIGDNVLIAPNVTL  110 (203)
T ss_pred             EEECCCCEECCCCEE
Confidence            344444444444444

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.03  E-value=2.3e-09  Score=75.81  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=42.2

Q ss_pred             EECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEc---cCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          271 AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       271 ~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~---~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +||++|.|++++.|. +++|++++.|++++.|.+....   ..+.||+++.+..++++..+++|++++.+.
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~   72 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIG   72 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEEC
Confidence            455555555555555 3666777777777777665432   346666666666666666666666666665

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.03  E-value=3.1e-09  Score=80.22  Aligned_cols=89  Identities=11%  Similarity=0.109  Sum_probs=56.9

Q ss_pred             CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEecc----EEccCCEECCccEEcCccEECCCcEECCceEEc-CcE
Q 018327          269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISSS----IIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGV  340 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~~----~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~  340 (358)
                      +..||++|.|++++.|.   ...||++|.|++++.|...    .......+...+.|+++|+||.++.|..++.++ ++.
T Consensus         3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~   82 (107)
T cd05825           3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAV   82 (107)
T ss_pred             eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCE
Confidence            34455555555555554   3577888888888777541    111223344556666666666666666666664 677


Q ss_pred             EccCceeccCCCCCccc
Q 018327          341 VLPHKEIKSSILKPEIV  357 (358)
Q Consensus       341 v~~~~~i~~~~~~~~~~  357 (358)
                      +.+++.|.+++|+++++
T Consensus        83 i~~gs~v~~~~~~~~~~   99 (107)
T cd05825          83 VGARSVVVRDLPAWTVY   99 (107)
T ss_pred             ECCCCEEeCcCCCCCEE
Confidence            77788888899988765

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2e-09  Score=98.79  Aligned_cols=89  Identities=22%  Similarity=0.371  Sum_probs=68.8

Q ss_pred             ECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC-----c
Q 018327          260 IGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD-----E  333 (358)
Q Consensus       260 i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~-----~  333 (358)
                      +.. +.+.++++||++|.|+.++.|. +++||++|+|++++.|.+|+|+++|.|+.++.+.+ ++||++|+||+     +
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~-sIi~~~~~ig~~~~i~d  330 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD-SIIGENCKIGASLIIGD  330 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee-eEEcCCcEECCceeecc
Confidence            444 6667788888888888888888 78888889998889999999999999999999888 88888888885     2


Q ss_pred             eEEc-CcEEccCceeccC
Q 018327          334 IYSN-GGVVLPHKEIKSS  350 (358)
Q Consensus       334 ~~i~-~~~v~~~~~i~~~  350 (358)
                      +.++ ++.+.|+..+..+
T Consensus       331 ~~~g~~~~i~~g~~~~~~  348 (358)
T COG1208         331 VVIGINSEILPGVVVGPG  348 (358)
T ss_pred             eEecCceEEcCceEeCCC
Confidence            3333 4555666666544

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.02  E-value=5e-09  Score=90.55  Aligned_cols=101  Identities=17%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCC-EECCCcEEeeeEECCCcEECCCcEEec-cEEcc----C----CEE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----STV  312 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~i  312 (358)
                      +++..|.+...+--+|.+++|++|...++|..++ +||++ .| ++.|.++|.||+++.|.. +.|+.    +    +.|
T Consensus       151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~I  228 (319)
T TIGR03535       151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISI  228 (319)
T ss_pred             CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEE
Confidence            5677777777777777777777777777777777 67775 44 677777777777777776 44444    4    666


Q ss_pred             CCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          313 GQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      |++|.|+.++.|  +..||++++|+ |+.|..+..|
T Consensus       229 Ge~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       229 GERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             CCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence            666666666666  56666666664 5555544443

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.01  E-value=1.6e-09  Score=101.70  Aligned_cols=71  Identities=27%  Similarity=0.400  Sum_probs=65.8

Q ss_pred             EecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       248 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      +.++++|++++.|+ ++.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++++..
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            45678999999998 89996 8999999999999999999999999999999999999999999999888876

>PLN02694 serine O-acetyltransferase

Probab=99.00  E-value=1.9e-09  Score=93.72  Aligned_cols=74  Identities=22%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             EEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEe-ccEEccCCEECC
Q 018327          247 NIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVGQ  314 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~  314 (358)
                      .|++.+.||+++.|..  +++|+++++||++|.|..++.++         +++|+++|.||.++.|. ++.||++|.||+
T Consensus       162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA  241 (294)
T PLN02694        162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA  241 (294)
T ss_pred             EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence            3455555555555544  56666666666666666666664         46888888888888874 467777777777


Q ss_pred             ccEEcC
Q 018327          315 WARVEN  320 (358)
Q Consensus       315 ~~~i~~  320 (358)
                      ++.+.+
T Consensus       242 gSVV~k  247 (294)
T PLN02694        242 GSVVLI  247 (294)
T ss_pred             CCEECC
Confidence            777665

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.98  E-value=3.6e-09  Score=97.67  Aligned_cols=50  Identities=20%  Similarity=0.189  Sum_probs=27.9

Q ss_pred             cEEeeeEECCCcEECCC-cEEeccEEccCCEECCccEEcC--ccEECCCcEEC
Q 018327          282 VRLSRCTVMRGVRIKKH-ACISSSIIGWHSTVGQWARVEN--MTILGEDVHVC  331 (358)
Q Consensus       282 ~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~ig~~~~i~~--~~~i~~~~~i~  331 (358)
                      |.|.+|+|++++.|+.+ +++.++++++++.|++++++..  +.++|++++|+
T Consensus       300 ~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       300 AEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             eEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence            33345666666666555 3556666666666666666653  24455555443

Alternate name: dTDP-D-glucose synthase

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.98  E-value=2.4e-09  Score=100.98  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccE
Q 018327          249 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~  323 (358)
                      ..+++|+++|.| +++.|. +|+|+++|.||++|+|.+|+|+++|.|+++|+|.+|+|+++|.|++++.|+.++.
T Consensus       325 ~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~  397 (425)
T PRK00725        325 AINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE  397 (425)
T ss_pred             EEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence            347899999999 788886 8999999999999999999999999999999999999999999988877765443

>PLN02357 serine acetyltransferase

Probab=98.97  E-value=4.5e-09  Score=93.95  Aligned_cols=91  Identities=20%  Similarity=0.243  Sum_probs=63.2

Q ss_pred             cEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEe-ccEEccCCEEC
Q 018327          246 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVG  313 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig  313 (358)
                      ..|++.+.||+++.+..  +++|+++++||++|.|+.++.|+         +++||++|.||.++.|. ++.||+++.||
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG  306 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG  306 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence            44555555666665554  45666666666666666666664         37899999999998885 47899999999


Q ss_pred             CccEEcCccEECCCcEECCceEEc
Q 018327          314 QWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      .++.+.+ -+-...+++|.=+.+-
T Consensus       307 AgSVV~~-dVP~~~~v~G~PArvv  329 (360)
T PLN02357        307 AGSVVLK-DVPPRTTAVGNPARLI  329 (360)
T ss_pred             CCCEECc-ccCCCcEEECCCeEEE
Confidence            9998887 4555555556555553

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=2.5e-09  Score=95.91  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  321 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  321 (358)
                      .+..++.+|.|..  .+ .||+|+.+++|+++|.|.+|+|+++|.||++|+|++++|..+|.|++|++|+..
T Consensus       295 ~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         295 SNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             eeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            3455555555544  33 499999999999999999999999999999999999999999999999999885

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.97  E-value=3.3e-09  Score=98.25  Aligned_cols=68  Identities=24%  Similarity=0.339  Sum_probs=55.8

Q ss_pred             ceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      ++.|+++|.|+++ .+. +++|+++|+|+++|+|.+|+|++++.|+++|.|.+|+||+++.|+.++.|++
T Consensus       294 ~~~ig~~~~I~~~-~v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~  361 (361)
T TIGR02091       294 DSLVSEGCIISGA-TVS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN  361 (361)
T ss_pred             CCEECCCCEECCC-EEE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence            3445555555544 342 8999999999999999999999999999999999999999999988887764

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.95  E-value=9.2e-09  Score=84.38  Aligned_cols=66  Identities=17%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             eEECCCcEECCCcEEecc-------------EEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCCCC
Q 018327          287 CTVMRGVRIKKHACISSS-------------IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK  353 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~~~-------------~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~  353 (358)
                      ..||++|.|+++|.|...             ..+..+.||+++.|+.+++|..+++||+     ++.+++++.|.+++|+
T Consensus        83 i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~-----~~~VgagavV~~~vp~  157 (169)
T cd03357          83 VTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD-----NSVIGAGSVVTKDIPA  157 (169)
T ss_pred             EEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC-----CCEECCCCEEccccCC
Confidence            466777777777777531             2334445555444444444444444444     4555557777888988


Q ss_pred             Cccc
Q 018327          354 PEIV  357 (358)
Q Consensus       354 ~~~~  357 (358)
                      ++++
T Consensus       158 ~~vv  161 (169)
T cd03357         158 NVVA  161 (169)
T ss_pred             CcEE
Confidence            8775

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.95  E-value=9.9e-09  Score=76.62  Aligned_cols=78  Identities=24%  Similarity=0.272  Sum_probs=39.2

Q ss_pred             cCCcEEecceEECC--CCEECCCcEECCCcEECCCCEECCCcE---EeeeEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327          243 ATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWA  316 (358)
Q Consensus       243 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~ig~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~  316 (358)
                      .+++.+.++++++.  ++.|++++.|++++.|+.++.|+.++.   +.+++|++++.|+.++.+.. +.|+++++|++++
T Consensus         6 ~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~   85 (101)
T cd03354           6 HPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANA   85 (101)
T ss_pred             CCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCC
Confidence            34444444444443  334444444444444555555554443   23455666666666666655 4555555555555


Q ss_pred             EEcC
Q 018327          317 RVEN  320 (358)
Q Consensus       317 ~i~~  320 (358)
                      .|.+
T Consensus        86 ~i~~   89 (101)
T cd03354          86 VVTK   89 (101)
T ss_pred             EECc
Confidence            4443

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PLN02739 serine acetyltransferase

Probab=98.95  E-value=2.9e-09  Score=94.33  Aligned_cols=76  Identities=20%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             CcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEec-cEEccCCEE
Q 018327          245 GANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISS-SIIGWHSTV  312 (358)
Q Consensus       245 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~~-~~i~~~~~i  312 (358)
                      +..|++.+.||+++.|.  .+++|+++++||++|.|..++.|+         +..||++|.||.++.|-+ +.||+++.|
T Consensus       205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI  284 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV  284 (355)
T ss_pred             CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence            44455555666666664  366777777777777777777775         356777777777777655 566666666


Q ss_pred             CCccEEcC
Q 018327          313 GQWARVEN  320 (358)
Q Consensus       313 g~~~~i~~  320 (358)
                      |.++.+..
T Consensus       285 GAGSVV~k  292 (355)
T PLN02739        285 AAGSLVLK  292 (355)
T ss_pred             CCCCEECC
Confidence            66655554

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.92  E-value=1.6e-08  Score=83.62  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=43.9

Q ss_pred             ecceEECCCCEECCCcEECCCc--EECCCCEECCCcEEee-------------eEECCCcEECCCcEEec-cEEccCCEE
Q 018327          249 VGNVLVHESAQIGEGCLIGPDV--AVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTV  312 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~~~~--~ig~~~~ig~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~i  312 (358)
                      ..++.||+++.|+.+++|...+  .||++|.|+++|.|..             ..+...+.||++|.|.. ++|.+++.|
T Consensus        71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I  150 (183)
T PRK10092         71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI  150 (183)
T ss_pred             cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence            4566666666666666665433  6677777777666641             12233444444444432 344444444


Q ss_pred             CCccEEcCccEECCCcEECCceEE
Q 018327          313 GQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      |+++.|..+++|..+  |.+++++
T Consensus       151 G~~~vIgagsvV~~d--i~~~~i~  172 (183)
T PRK10092        151 GDNVVVASGAVVTKD--VPDNVVV  172 (183)
T ss_pred             CCCCEECCCCEEccc--cCCCcEE
Confidence            444444444444443  3444444

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.89  E-value=4.5e-09  Score=79.45  Aligned_cols=93  Identities=20%  Similarity=0.351  Sum_probs=73.1

Q ss_pred             ceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEeccEEccCCEECC
Q 018327          251 NVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISSSIIGWHSTVGQ  314 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~ig~  314 (358)
                      +..+.-.+.+..+++|+   .++.+|..|+++++|.|.             +..||+++.|+++|++..+.||..+.+|.
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk  112 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK  112 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence            44555555566666666   478888888888888882             46899999999999999999999998888


Q ss_pred             ccEEcCccEECCCcEECCceEEcCcEEcc
Q 018327          315 WARVENMTILGEDVHVCDEIYSNGGVVLP  343 (358)
Q Consensus       315 ~~~i~~~~~i~~~~~i~~~~~i~~~~v~~  343 (358)
                      ++.|+.+|++.+-|+|-+++++....+.|
T Consensus       113 naviGrrCVlkdCc~ild~tVlPpet~vp  141 (184)
T KOG3121|consen  113 NAVIGRRCVLKDCCRILDDTVLPPETLVP  141 (184)
T ss_pred             ceeEcCceEhhhheeccCCcccCcccccC
Confidence            88888888888888888888886444433

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.89  E-value=1.1e-08  Score=86.72  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=37.3

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS  303 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~  303 (358)
                      .+++.|.|++++-.++.|++++++.+.++|.-|+.+++++-|. +.++|..++||.||+|++
T Consensus       106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higg  167 (271)
T COG2171         106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGG  167 (271)
T ss_pred             cCceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCC
Confidence            3446666666666666666666665556666666666666665 566666666666666554

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.89  E-value=7.5e-09  Score=96.17  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEE
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  318 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i  318 (358)
                      +..+++++.+ +++.|+++|.|+  ..+ ++|+|+++|+|+++|+|.+|+|++++.|++++.+.+|+|++++.|++++++
T Consensus       278 p~~i~~~~~i-~~~~Ig~~~~i~--~~v-~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       278 PTYYAENSKV-ENSLVANGCIIE--GKV-ENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CcEEcCCCEE-EEeEEcCCCEEe--eEE-eCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence            3345556655 556667777665  234 489999999999999999999999999999999999999999999999888


Q ss_pred             cC
Q 018327          319 EN  320 (358)
Q Consensus       319 ~~  320 (358)
                      .+
T Consensus       354 ~~  355 (369)
T TIGR02092       354 AG  355 (369)
T ss_pred             CC
Confidence            66

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.87  E-value=1.3e-08  Score=77.07  Aligned_cols=6  Identities=0%  Similarity=-0.003  Sum_probs=2.4

Q ss_pred             cCCCCC
Q 018327          349 SSILKP  354 (358)
Q Consensus       349 ~~~~~~  354 (358)
                      +++|++
T Consensus        93 ~~i~~~   98 (109)
T cd04647          93 KDVPPN   98 (109)
T ss_pred             eECCCC
Confidence            344443

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=98.83  E-value=5.9e-08  Score=83.21  Aligned_cols=116  Identities=24%  Similarity=0.279  Sum_probs=80.9

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      |||+|.+.++|+..      |.|++++|+|||+|+++.+.+++ +++|+|.+..  +++.+.+.++    +..+......
T Consensus         2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~----g~~v~~~~~~   69 (217)
T PF02348_consen    2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY----GAKVIFRRGS   69 (217)
T ss_dssp             EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT----TSEEEE--TT
T ss_pred             EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc----CCeeEEcChh
Confidence            79999999999977      99999999999999999999987 7898877765  6677777665    4666555444


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHhcCCe
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGE  131 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~-~~l~~~~~~~~~~~~~  131 (358)
                      ...++. +...+........++.++.+.||..+ . ..+.++++.+.+...+
T Consensus        70 ~~~~~~-r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   70 LADDTD-RFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             SSSHHH-HHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             hcCCcc-cHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            433333 33344333322233367888899943 3 3488999998887664

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.81  E-value=1.1e-07  Score=85.74  Aligned_cols=157  Identities=23%  Similarity=0.291  Sum_probs=100.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHCC-----------CCEEEEEec-cChHHHHHHHH
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK   65 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~g-----------i~~i~vv~~-~~~~~i~~~l~   65 (358)
                      |.+||||||.|+||.   ...||+|+|++   |+|++++.++.+.+.+           .-.+++.++ +.++++.++++
T Consensus        16 va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~   92 (323)
T cd04193          16 VAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK   92 (323)
T ss_pred             EEEEEECCCcccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence            458999999999994   48899999998   7999999999998842           123457777 56788999998


Q ss_pred             hhhhccCc---EEEEecc---------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeecc
Q 018327           66 EFEAKLGI---KIICSQE---------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEY  116 (358)
Q Consensus        66 ~~~~~~~~---~i~~~~~---------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~  116 (358)
                      + ...+|+   .+.+..|                     ..|.|.++-....     ++.+....-+.+.+...|.+...
T Consensus        93 ~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~  171 (323)
T cd04193          93 E-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK  171 (323)
T ss_pred             h-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence            7 233343   3443322                     1244655433222     23332233348999999995433


Q ss_pred             C-HHHHHHHHHhcCCeeEEEe---c-CCCCeeeEEEc-CCCCcEEEEeecCC
Q 018327          117 P-FAEMIEFHKAHGGEASIMV---D-EPSKYGVVVME-ESTGKVEKFVEKPK  162 (358)
Q Consensus       117 ~-l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d-~~~~~v~~~~ek~~  162 (358)
                      . -..++-.+.+++.++.+-+   . ..+.-|.+... .. -.+.++.+-|.
T Consensus       172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~  222 (323)
T cd04193         172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISD  222 (323)
T ss_pred             ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCH
Confidence            2 3677778788888877755   2 23455665543 22 34556666543

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.81  E-value=4e-08  Score=78.07  Aligned_cols=87  Identities=16%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             EECCCCEECC-CcEECC-CcEECCCCEECCCcEEeee--EECCC-----cEE-----------CCCcEEeccEEccCCEE
Q 018327          253 LVHESAQIGE-GCLIGP-DVAVGPGCVVESGVRLSRC--TVMRG-----VRI-----------KKHACISSSIIGWHSTV  312 (358)
Q Consensus       253 ~i~~~~~i~~-~~~i~~-~~~ig~~~~ig~~~~i~~~--~i~~~-----~~i-----------~~~~~i~~~~i~~~~~i  312 (358)
                      .||.++.|+. .+.+.. .+.||++|.|++++.|...  .-.++     -.+           .......+++||++|+|
T Consensus         3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I   82 (145)
T cd03349           3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI   82 (145)
T ss_pred             EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence            3444444544 333332 5666666666666666421  11110     011           11223445789999999


Q ss_pred             CCccEEcCccEECCCcEECCceEEcCc
Q 018327          313 GQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      |.++.+.+++.||++++|++++.+...
T Consensus        83 g~~~~i~~gv~Ig~~~vIgags~V~~~  109 (145)
T cd03349          83 GHGATILPGVTIGDGAVIAAGAVVTKD  109 (145)
T ss_pred             CCCCEEeCCCEECCCCEECCCCEEccc
Confidence            999999888999999999999888653

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.80  E-value=1.1e-08  Score=83.79  Aligned_cols=81  Identities=22%  Similarity=0.307  Sum_probs=59.1

Q ss_pred             eEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECC---CcEEeccEEccCCEECCccEEcCccEECC
Q 018327          252 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      +-|+|.++||+|..+.  -+.+||+-++||.++.|     ++++++|.   ++--+.-.||++|+||.+++|.+++.||+
T Consensus       149 vdihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGe  223 (269)
T KOG4750|consen  149 VDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGE  223 (269)
T ss_pred             ccccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCCeeECC
Confidence            4577888888887775  24566666666666555     55555543   22223358999999999999999999999


Q ss_pred             CcEECCceEEc
Q 018327          327 DVHVCDEIYSN  337 (358)
Q Consensus       327 ~~~i~~~~~i~  337 (358)
                      |++|++|+.+.
T Consensus       224 gavIaAGsvV~  234 (269)
T KOG4750|consen  224 GAVIAAGSVVL  234 (269)
T ss_pred             CcEEeccceEE
Confidence            99999988764

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.72  E-value=1.5e-08  Score=77.34  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             cCCcEEecceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEee--------------eEECCCcEECCCcEEeccE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~--------------~~i~~~~~i~~~~~i~~~~  305 (358)
                      ...+.|++.+.|++++++++.+++.   +.-+||+|+.|.+.+.|.|              -+||.+-...-+|..+...
T Consensus        18 CvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~k   97 (190)
T KOG4042|consen   18 CVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKK   97 (190)
T ss_pred             EEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhh
Confidence            3445566888888888888888776   4669999999999988865              2556655555566666668


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      +|++..|+..+.+++|+.+.++|.||+++.+.+....|..++
T Consensus        98 vGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~  139 (190)
T KOG4042|consen   98 VGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTS  139 (190)
T ss_pred             hcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcce
Confidence            999999999999999999999999999999987776665543

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.69  E-value=9.6e-08  Score=80.09  Aligned_cols=89  Identities=18%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             cceEECCCCEECCCcEE--CCCcEECCCCEECCCcEEe-eeEECCCcEECCC--cEEeccEEccCCEECCccEEcCccEE
Q 018327          250 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH--ACISSSIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~--~~i~~~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      ....+|..+.++.++.+  ..+..||+++.++.++.|. ++..++...-..+  .....++||++|+||.+++|.+|+.|
T Consensus        66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I  145 (190)
T COG0110          66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI  145 (190)
T ss_pred             cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence            34455555555555442  2344566666666666665 3344433333332  11223789999999999999999999


Q ss_pred             CCCcEECCceEEcC
Q 018327          325 GEDVHVCDEIYSNG  338 (358)
Q Consensus       325 ~~~~~i~~~~~i~~  338 (358)
                      |++++||+++++.+
T Consensus       146 G~gavigagsVVtk  159 (190)
T COG0110         146 GEGAVIGAGSVVTK  159 (190)
T ss_pred             CCCcEEeeCCEEeC
Confidence            99999999988765

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.67  E-value=1.9e-07  Score=75.61  Aligned_cols=78  Identities=26%  Similarity=0.285  Sum_probs=59.9

Q ss_pred             cCCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCC
Q 018327          243 ATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHS  310 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~  310 (358)
                      .-+..|+|.+.||++..|..  +.+|++.++||++|.|-.+++|+.         =.|+++|.||.+|.|-+ -.||+++
T Consensus        65 ~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~a  144 (194)
T COG1045          65 LFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNA  144 (194)
T ss_pred             hcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCC
Confidence            35666677777777777755  567888888888888888888862         27899999999888876 4788888


Q ss_pred             EECCccEEcC
Q 018327          311 TVGQWARVEN  320 (358)
Q Consensus       311 ~ig~~~~i~~  320 (358)
                      .||+|+++..
T Consensus       145 kIGA~sVVlk  154 (194)
T COG1045         145 KIGAGSVVLK  154 (194)
T ss_pred             EECCCceEcc
Confidence            8888888876

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=98.65  E-value=2.6e-06  Score=70.25  Aligned_cols=184  Identities=16%  Similarity=0.279  Sum_probs=109.9

Q ss_pred             CeEEEEecCCc-cccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh--HHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVGGFG-TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~G~g-~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~   76 (358)
                      |-++|+.|..| +||..      |.|+|+++.|||+|+|+++..+. .++++|.++...  +.+..+..    +.|..+.
T Consensus         3 ~I~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~----~~G~~vf   72 (241)
T COG1861           3 MILVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR----SHGFYVF   72 (241)
T ss_pred             cEEEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHH----HcCeeEe
Confidence            45677777655 55644      99999999999999999999987 788888888743  33444444    4455552


Q ss_pred             EeccCCcCCCchHHH-HHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCc
Q 018327           77 CSQETEPLGTAGPLA-LARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGK  153 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~-~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  153 (358)
                             .|+.+.+. +....++.-..+.++=+.||..+ ..+ ++.+++.|.+++++            ++...   +.
T Consensus        73 -------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD------------Y~s~~---~~  130 (241)
T COG1861          73 -------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD------------YVSNT---GA  130 (241)
T ss_pred             -------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc------------ccccc---CC
Confidence                   35544333 22233322233367778999944 333 68899999887653            11111   10


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCC--CCcccchHHHHHhcCceEEEe---ec------CeEEecCCHHH
Q 018327          154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP--TSIEKEVFPKIALEGKLFAMV---LP------GFWMDIGQPRD  222 (358)
Q Consensus       154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~--~~~~~d~l~~l~~~~~v~~~~---~~------~~~~di~t~~d  222 (358)
                                    ..-+++-+|+...|+......  .+..+..-+++-++-+.+...   .+      ++-..++|.+|
T Consensus       131 --------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD  196 (241)
T COG1861         131 --------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQED  196 (241)
T ss_pred             --------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHH
Confidence                          122455677777777543221  112233334444443333322   22      35567899999


Q ss_pred             HHHHHHHH
Q 018327          223 YITGLRLY  230 (358)
Q Consensus       223 y~~a~~~~  230 (358)
                      |.-++..+
T Consensus       197 ~~~~~~vy  204 (241)
T COG1861         197 FALAKAVY  204 (241)
T ss_pred             HHHHHHHH
Confidence            98776554

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=6.1e-08  Score=82.91  Aligned_cols=78  Identities=22%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             ECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327          266 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  344 (358)
Q Consensus       266 i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~  344 (358)
                      |.++++|.+++++-..++|+ |..||.+++||++++|.+|+|.++|+|.+|+.+.+ |+||-++.||.=+.+.+..+.|.
T Consensus       285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iGrWaRVe~~pv~~s  363 (407)
T KOG1460|consen  285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIGRWARVEGIPVEPS  363 (407)
T ss_pred             EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeecccccccceeeecccccccC
Confidence            44566666666666666666 66678888888888888888888888888888888 88888888886666655444443

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.64  E-value=2.4e-07  Score=73.62  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=16.6

Q ss_pred             EEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCcc
Q 018327          317 RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEI  356 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~  356 (358)
                      .|+++|.||.++.|.+++.|+ ++.+++++.|.+++|+.++
T Consensus        75 ~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v  115 (145)
T cd03349          75 IIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI  115 (145)
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence            333333333333333333332 3344444444555555443

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.61  E-value=1.9e-06  Score=81.25  Aligned_cols=180  Identities=21%  Similarity=0.313  Sum_probs=108.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHHC------------C-CCEEEEEec-cChHHHHHH
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAV------------G-VTEVVLAIN-YQPEVMLNF   63 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~~------------g-i~~i~vv~~-~~~~~i~~~   63 (358)
                      |.+||||||.|+||+.   ..||+|+|+   .|+|+++++++++...            + .-.++|+++ +..+.+++|
T Consensus       107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~  183 (482)
T PTZ00339        107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF  183 (482)
T ss_pred             eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence            4589999999999975   899999999   4999999999999875            1 124455544 567889999


Q ss_pred             HHhhhhccCc---EEEEecc----------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCee
Q 018327           64 LKEFEAKLGI---KIICSQE----------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVI  113 (358)
Q Consensus        64 l~~~~~~~~~---~i~~~~~----------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i  113 (358)
                      +++. ..+|+   .+.+..|                      ..|.|.++-....     ++.+....-+++.+...|.+
T Consensus       184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~  262 (482)
T PTZ00339        184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI  262 (482)
T ss_pred             HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence            9862 12221   1221111                      1234665433221     23333333348889999997


Q ss_pred             eccC-HHHHHHHHHhcCC-eeEEEe---cCCCCeeeEEEcCCCCcEEEEeecCC-------CCCC----CeEEEEEEEEC
Q 018327          114 SEYP-FAEMIEFHKAHGG-EASIMV---DEPSKYGVVVMEESTGKVEKFVEKPK-------LFVG----NKINAGIYLLN  177 (358)
Q Consensus       114 ~~~~-l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~d~~~~~v~~~~ek~~-------~~~~----~~~~~Giy~~~  177 (358)
                      .... =..++-.+..++. +++-.+   ...+.-|++......-.+.++.|-+.       ...+    ...++...+|+
T Consensus       263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs  342 (482)
T PTZ00339        263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS  342 (482)
T ss_pred             cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence            5433 2566666666666 554443   33355566654321024666665332       1111    23567888899


Q ss_pred             hhhhhhc
Q 018327          178 PAVLDRI  184 (358)
Q Consensus       178 ~~~l~~l  184 (358)
                      -++++++
T Consensus       343 l~fl~~~  349 (482)
T PTZ00339        343 LDFLKKV  349 (482)
T ss_pred             HHHHHHH
Confidence            8888755

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=98.51  E-value=3.9e-05  Score=71.90  Aligned_cols=177  Identities=18%  Similarity=0.230  Sum_probs=110.7

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHHC----CC-CEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----GV-TEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~~----gi-~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i   75 (358)
                      +|.||||.|+||+-   ..||.++|+ .|+++++..++.+...    |. =..++.++. .+++++++++++.. .+..+
T Consensus        82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i  157 (469)
T PLN02474         82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI  157 (469)
T ss_pred             EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence            67799999999987   789999999 5889988887766543    32 234666666 46789999997532 22233


Q ss_pred             EEecc------------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018327           76 ICSQE------------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (358)
Q Consensus        76 ~~~~~------------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~  126 (358)
                      .+..|                        ..|.|.++-....     ++.+....-+++.+.+.|.+...-=..++.++.
T Consensus       158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~  237 (469)
T PLN02474        158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI  237 (469)
T ss_pred             EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence            22211                        1234554422211     233333333489999999964322256777778


Q ss_pred             hcCCeeEEEe----cCCCCeeeEEE-cCCCCcEEEEeecCCC--------CCCCeEEEEEEEEChhhhhhc
Q 018327          127 AHGGEASIMV----DEPSKYGVVVM-EESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  184 (358)
Q Consensus       127 ~~~~~~~~~~----~~~~~~~~~~~-d~~~~~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l  184 (358)
                      .++.+.++-+    .....-|.+.. |.. -++.++.+-|.+        ..-...++..++|+-++++++
T Consensus       238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~  307 (469)
T PLN02474        238 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL  307 (469)
T ss_pred             hcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence            7877777665    22233455553 322 346777776642        133468999999999888876

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.50  E-value=1.9e-07  Score=81.28  Aligned_cols=81  Identities=15%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             ECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEE-cCcEEcc
Q 018327          266 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLP  343 (358)
Q Consensus       266 i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~  343 (358)
                      +.++..+.+-..+|++|.|+ |++||.+|+|++++.|++|.+..+..++..+.|.. +++|-++.||.++.+ +.+.++.
T Consensus       261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~~~IG~~~~id~~a~lG~  339 (371)
T KOG1322|consen  261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS-SIVGWNVPIGIWARIDKNAVLGK  339 (371)
T ss_pred             ccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh-hhccccccccCceEEecccEecc
Confidence            33445555555555666666 46778888888888888888888887776666665 555555555555555 2444444


Q ss_pred             Ccee
Q 018327          344 HKEI  347 (358)
Q Consensus       344 ~~~i  347 (358)
                      +..|
T Consensus       340 nV~V  343 (371)
T KOG1322|consen  340 NVIV  343 (371)
T ss_pred             ceEE
Confidence            4443

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.47  E-value=3.5e-07  Score=91.00  Aligned_cols=94  Identities=20%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             EecceEECCCCEECCCcEECCC-------cEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          248 IVGNVLVHESAQIGEGCLIGPD-------VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       248 i~~~~~i~~~~~i~~~~~i~~~-------~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      +.+......+++||+++.|+..       +.||++|.|+++|.|.. ...++..    -.+.++.||++|.||.+++|.+
T Consensus       588 ~~~~~lr~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~-h~~~~~~----~~~~~v~IG~~~~IG~~a~V~~  662 (695)
T TIGR02353       588 FLPAILRLLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT-HLFEDRV----MKSDTVTIGDGATLGPGAIVLY  662 (695)
T ss_pred             HHHHHHHHCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe-ccccccc----cccCCeEECCCCEECCCCEECC
Confidence            3344444455555555555432       35555555555555532 1111111    1244578888888888888888


Q ss_pred             ccEECCCcEECCceEEc-CcEEccCce
Q 018327          321 MTILGEDVHVCDEIYSN-GGVVLPHKE  346 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~-~~~v~~~~~  346 (358)
                      ++.||++++|++++.+. +..+.|++.
T Consensus       663 g~~IGd~a~Ig~~SvV~~g~~vp~~s~  689 (695)
T TIGR02353       663 GVVMGEGSVLGPDSLVMKGEEVPAHTR  689 (695)
T ss_pred             CCEECCCCEECCCCEEcCCcccCCCCE
Confidence            88888888888888874 445555543

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.45  E-value=5.9e-07  Score=89.42  Aligned_cols=65  Identities=15%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          268 PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       268 ~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +...||+||.|+++|.+.+..+      ..+....+ .+||++|.||.+++|.+++.||++++|++++.+.+
T Consensus       130 ~li~IG~~~~I~~~v~l~~~~~------~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~  195 (695)
T TIGR02353       130 DLLTIGAGTIVRKEVMLLGYRA------ERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG  195 (695)
T ss_pred             CceEECCCCEECCCCEEEcccC------CCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence            3455677777777666643222      23333333 58899999999999988899999999999988864

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=98.39  E-value=5.2e-06  Score=68.76  Aligned_cols=95  Identities=11%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             CCCcccccCC--cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           21 VPKPLVEFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        21 ~pK~llpi~g--~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      .+|+|+++.|  +|||+|+++.+. ..+++++|++++. +..    .    ..++.+.. ......|...++..+.....
T Consensus         3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~-~~~----~----~~~~~~i~-d~~~g~gpl~~~~~gl~~~~   71 (178)
T PRK00576          3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPG-QPL----P----ELPAPVLR-DELRGLGPLPATGRGLRAAA   71 (178)
T ss_pred             CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCC-ccc----c----cCCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence            4899999999  999999999776 4589999999864 211    1    11333322 22333466665655554331


Q ss_pred             CCCCCcEEEEeCCee-eccC-HHHHHHHHH
Q 018327           99 DDTGEPFFVLNSDVI-SEYP-FAEMIEFHK  126 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i-~~~~-l~~~~~~~~  126 (358)
                      ....+.++++.||+. ...+ +..+++.+.
T Consensus        72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~  101 (178)
T PRK00576         72 EAGARLAFVCAVDMPYLTVELIDDLARPAA  101 (178)
T ss_pred             hcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            122348999999993 3333 667666543

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.28  E-value=5.3e-06  Score=68.51  Aligned_cols=107  Identities=16%  Similarity=0.280  Sum_probs=79.2

Q ss_pred             cCCcEEe-cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEEcC
Q 018327          243 ATGANIV-GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVEN  320 (358)
Q Consensus       243 ~~~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~  320 (358)
                      ++.+.+. ..+...-...||+++.+. ..++++...+|+++.|...++..++.|+.+|.+.+ .+...+++||.++.|..
T Consensus         7 Pp~Tr~e~~~ivv~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~g   85 (277)
T COG4801           7 PPNTRVEEAIIVVKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG   85 (277)
T ss_pred             CCCCceeeeeEEEeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence            4444443 223333334445555553 55788888888999998888889999999999987 68888899999999999


Q ss_pred             ccEECCCcEECCceEEcCcEEccCceeccC
Q 018327          321 MTILGEDVHVCDEIYSNGGVVLPHKEIKSS  350 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~  350 (358)
                      ..++..+-.||+++.|+++.+..+-.+.++
T Consensus        86 kl~v~gdLdig~dV~Ieggfva~g~Ivirn  115 (277)
T COG4801          86 KLTVIGDLDIGADVIIEGGFVAKGWIVIRN  115 (277)
T ss_pred             eEEEecccccccceEEecCeeecceEEEcC
Confidence            888888899999999888887666555443

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.27  E-value=1.5e-06  Score=66.03  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=45.4

Q ss_pred             ccCCcEEe---cceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEeeeEECCCcEECCCcEEec
Q 018327          242 LATGANIV---GNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS  303 (358)
Q Consensus       242 ~~~~~~i~---~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~  303 (358)
                      +.+++.|.   .++.+|..++++.+++|++            +..||+++.|++.|++.-+.||..+.+|.+|+|++
T Consensus        42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGr  118 (184)
T KOG3121|consen   42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGR  118 (184)
T ss_pred             EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcC
Confidence            34666665   3677777778888777774            35788888888888888788888888777665544

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=98.16  E-value=1.8e-05  Score=74.15  Aligned_cols=49  Identities=14%  Similarity=0.064  Sum_probs=33.1

Q ss_pred             ECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccC
Q 018327          260 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH  309 (358)
Q Consensus       260 i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~  309 (358)
                      +.+++.|- ||++..++.+|++++|.+|.|+.++.||++|.|.++-+...
T Consensus       276 ~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~  324 (414)
T PF07959_consen  276 SEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW  324 (414)
T ss_pred             cCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence            34444443 77777777777777777777777777777777777644443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=98.14  E-value=0.00012  Score=65.12  Aligned_cols=177  Identities=21%  Similarity=0.281  Sum_probs=110.7

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHHC----C-CCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i   75 (358)
                      +|+||||.|+||+-   ..||.|+|+ .|+++++..++.+...    + .=..+|.++. .++++.++++++.. ....+
T Consensus         6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~v   81 (300)
T cd00897           6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVDI   81 (300)
T ss_pred             EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccCe
Confidence            57899999999976   789999999 5889999998888653    3 2245666666 46789999987531 11111


Q ss_pred             EEec------------------------cCCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018327           76 ICSQ------------------------ETEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (358)
Q Consensus        76 ~~~~------------------------~~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~  126 (358)
                      .+..                        ...|.|.++-....     ++.+....-+++.+.+.|.+...-=..++..+.
T Consensus        82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~  161 (300)
T cd00897          82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV  161 (300)
T ss_pred             EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence            1111                        11234554422211     122222333489999999964322256778888


Q ss_pred             hcCCeeEEEe---cCC-CCeeeEEE-cCCCCcEEEEeecCCCC--------CCCeEEEEEEEEChhhhhhc
Q 018327          127 AHGGEASIMV---DEP-SKYGVVVM-EESTGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI  184 (358)
Q Consensus       127 ~~~~~~~~~~---~~~-~~~~~~~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l  184 (358)
                      .++.+.++-+   ..+ +.-|.+.. |.. -++.++.+-|.+.        .-.+.++..++|+-++++.+
T Consensus       162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~  231 (300)
T cd00897         162 DNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV  231 (300)
T ss_pred             hcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence            8888887755   222 35555554 322 3467777766421        23367888889998887765

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.05  E-value=1.4e-05  Score=66.01  Aligned_cols=73  Identities=14%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             CcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEE
Q 018327          269 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  341 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v  341 (358)
                      +.++...+.||.|+.+.-.++++.+.+|+++.|.+.+++.++.|+.||++..+++++.++.||..+.+++..+
T Consensus        16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~   88 (277)
T COG4801          16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT   88 (277)
T ss_pred             eEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence            4455666777778888877888888889999999988888888888888888888888888888888877555

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=98.05  E-value=5.3e-06  Score=48.91  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=14.7

Q ss_pred             EEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      .|++++.|++++.|.+++.||+++.|++++.|
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            34444444444444444444444444444444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.97  E-value=8.1e-06  Score=48.09  Aligned_cols=11  Identities=9%  Similarity=-0.037  Sum_probs=3.7

Q ss_pred             ECCCcEECCCc
Q 018327          289 VMRGVRIKKHA  299 (358)
Q Consensus       289 i~~~~~i~~~~  299 (358)
                      |++++.|++++
T Consensus        22 Ig~~~~I~~~~   32 (36)
T PF00132_consen   22 IGDNCVIGPGV   32 (36)
T ss_dssp             E-TTEEEETTE
T ss_pred             ECCCCEEcCCC
Confidence            33333333333

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=97.93  E-value=0.00017  Score=60.60  Aligned_cols=86  Identities=16%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             CcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe
Q 018327           30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (358)
Q Consensus        30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~  109 (358)
                      -+|||+|+++.+..+++++++++++.  +++.++...    +++.+.  .+.. .|..+++..+.+.+.... +.++++.
T Consensus        29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i--~~~~-~G~~~si~~al~~~~~~~-~~vlv~~   98 (195)
T TIGR03552        29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVL--RDPG-PGLNNALNAALAEAREPG-GAVLILM   98 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEE--ecCC-CCHHHHHHHHHHHhhccC-CeEEEEe
Confidence            47999999999999887888888774  445544433    245443  3333 388999999988774322 3799999


Q ss_pred             CCee--eccCHHHHHHHH
Q 018327          110 SDVI--SEYPFAEMIEFH  125 (358)
Q Consensus       110 gD~i--~~~~l~~~~~~~  125 (358)
                      +|..  ....++++++.+
T Consensus        99 ~D~P~l~~~~i~~l~~~~  116 (195)
T TIGR03552        99 ADLPLLTPRELKRLLAAA  116 (195)
T ss_pred             CCCCCCCHHHHHHHHHhc
Confidence            9993  344577777765

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.82  E-value=4.1e-05  Score=58.82  Aligned_cols=53  Identities=25%  Similarity=0.223  Sum_probs=40.1

Q ss_pred             ceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec
Q 018327          251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS  303 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~  303 (358)
                      .+.|.|++.++..+-|++.+.|+++|+|-+.+++.    -.+||+|+.|.+.+.|.+
T Consensus         8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n   64 (190)
T KOG4042|consen    8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN   64 (190)
T ss_pred             eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence            36677777777777777788888888888877775    357888888877777765

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.74  E-value=5.1e-05  Score=62.57  Aligned_cols=71  Identities=18%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             ecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327          249 VGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHSTVGQWA  316 (358)
Q Consensus       249 ~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~  316 (358)
                      +|.+.||.+-.+..  +++|++-++||++|.|..++.++.         =.||+||.||.++.|-+ ..||++++|++++
T Consensus       152 hpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGs  231 (269)
T KOG4750|consen  152 HPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGS  231 (269)
T ss_pred             cchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccc
Confidence            34444444444332  556666666666666666666641         24566666665554433 3444454444444


Q ss_pred             EEc
Q 018327          317 RVE  319 (358)
Q Consensus       317 ~i~  319 (358)
                      .+.
T Consensus       232 vV~  234 (269)
T KOG4750|consen  232 VVL  234 (269)
T ss_pred             eEE
Confidence            444

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=97.69  E-value=0.00061  Score=64.47  Aligned_cols=178  Identities=20%  Similarity=0.249  Sum_probs=109.4

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------------C-CCEEEEEecc-ChHHHHHH
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------------G-VTEVVLAINY-QPEVMLNF   63 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------------g-i~~i~vv~~~-~~~~i~~~   63 (358)
                      +|+||||.|+||+-   ..||.|++|+   ++++++...+++.+.              + .=..+|.++. .+++++++
T Consensus       119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f  195 (493)
T PLN02435        119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF  195 (493)
T ss_pred             EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence            56789999999987   8999999885   899999998876432              1 1144777776 46789999


Q ss_pred             HHhhhhccCc---EEEEecc---------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeee
Q 018327           64 LKEFEAKLGI---KIICSQE---------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVIS  114 (358)
Q Consensus        64 l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~  114 (358)
                      +++. ..+|.   .+.+..|                     ..|.|.++-....     ++.+....-+.+.+...|.+.
T Consensus       196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L  274 (493)
T PLN02435        196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL  274 (493)
T ss_pred             HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence            9862 22222   2222211                     2345665532222     233322333488899999964


Q ss_pred             ccC-HHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCCC------C-CC----CeEEEEEEEE
Q 018327          115 EYP-FAEMIEFHKAHGGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPKL------F-VG----NKINAGIYLL  176 (358)
Q Consensus       115 ~~~-l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~~------~-~~----~~~~~Giy~~  176 (358)
                      ... -..++-.+..++.++.+-+   ..+ +.-|.++....+|+  |.++.|-+..      . .+    ...+...++|
T Consensus       275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~f  354 (493)
T PLN02435        275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMF  354 (493)
T ss_pred             ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhc
Confidence            333 3677777777887777655   223 45577765211144  6666654421      1 12    3356778889


Q ss_pred             Chhhhhhc
Q 018327          177 NPAVLDRI  184 (358)
Q Consensus       177 ~~~~l~~l  184 (358)
                      +-++++.+
T Consensus       355 s~~fL~~~  362 (493)
T PLN02435        355 TLDFLNQV  362 (493)
T ss_pred             cHHHHHHH
Confidence            98888876

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=97.65  E-value=0.00044  Score=70.35  Aligned_cols=199  Identities=12%  Similarity=0.163  Sum_probs=112.4

Q ss_pred             cEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCC-CcEEEEeecCC--------CCCCCeE
Q 018327          104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEEST-GKVEKFVEKPK--------LFVGNKI  169 (358)
Q Consensus       104 ~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~-~~v~~~~ek~~--------~~~~~~~  169 (358)
                      .++|..||.+..++  ..+...  ...+++...     +-..++|++..|.+. +++..+..||.        ....-+.
T Consensus       154 g~li~~gDv~~~f~--~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~  229 (974)
T PRK13412        154 HTLIASGDVYIRSE--QPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM  229 (974)
T ss_pred             ceEEEecchhhhcc--ccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence            58999999855432  111111  112332222     445789999988752 57788888886        1223368


Q ss_pred             EEEEEEEChhhhhhccCC------CC----CcccchHHHHH----------hcCceEEEeec-CeEEecCCHHHHHHHHH
Q 018327          170 NAGIYLLNPAVLDRIELR------PT----SIEKEVFPKIA----------LEGKLFAMVLP-GFWMDIGQPRDYITGLR  228 (358)
Q Consensus       170 ~~Giy~~~~~~l~~l~~~------~~----~~~~d~l~~l~----------~~~~v~~~~~~-~~~~di~t~~dy~~a~~  228 (358)
                      ++|+|+|+.++.+.|...      +.    ++..||+..|-          +.-++....++ +.++.++|-.+|+...-
T Consensus       230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~  309 (974)
T PRK13412        230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL  309 (974)
T ss_pred             eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence            999999999888765421      11    22234443322          12234444443 57999999998886432


Q ss_pred             HHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcE-EeeeEECCCcEECCCcEEeccE-E
Q 018327          229 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVR-LSRCTVMRGVRIKKHACISSSI-I  306 (358)
Q Consensus       229 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~-i~~~~i~~~~~i~~~~~i~~~~-i  306 (358)
                      .+.+...- ....++..  +.+          .+.+.+ -|+++.+++.+++++. |++|.|+.+++||++|+|.++. .
T Consensus       310 ~~q~~~~~-~~~i~~~~--~~~----------~~~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~  375 (974)
T PRK13412        310 AVQNLVTD-QRRIMHRK--VKP----------HPAMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN  375 (974)
T ss_pred             hHHHHhhh-hhhhhccc--cCC----------CCceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence            22211110 00111110  010          111223 3788888888888744 6688888888888888888863 3


Q ss_pred             ccCCEECCccEEcC
Q 018327          307 GWHSTVGQWARVEN  320 (358)
Q Consensus       307 ~~~~~ig~~~~i~~  320 (358)
                      .-+..|-+++.|-.
T Consensus       376 ~~~~~vP~~~ci~~  389 (974)
T PRK13412        376 SWNLDLPEGVCIDV  389 (974)
T ss_pred             ccceecCCCcEEEE
Confidence            33455556555554

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.62  E-value=0.00052  Score=57.38  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             CCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEec-cEEccCCEE-------CCccEEcCccEECCCcEECCceEE
Q 018327          268 PDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-SIIGWHSTV-------GQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       268 ~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~-~~i~~~~~i-------g~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      .+..+|.+|.++.++.+.   +..|++++.+++++.|.. +..++...-       ...++|+++++||.+++|-.|++|
T Consensus        66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I  145 (190)
T COG0110          66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI  145 (190)
T ss_pred             cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence            355666666666666643   455777777777777775 233222211       224677777777777777777777


Q ss_pred             c-CcEEccCceeccCCCCCccc
Q 018327          337 N-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       337 ~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      + |++++.++.+.+|+|+.+|+
T Consensus       146 G~gavigagsVVtkdvp~~~iv  167 (190)
T COG0110         146 GEGAVIGAGSVVTKDVPPYGIV  167 (190)
T ss_pred             CCCcEEeeCCEEeCccCCCeEE
Confidence            5 77778899999999998775

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=97.57  E-value=0.0048  Score=57.77  Aligned_cols=177  Identities=24%  Similarity=0.304  Sum_probs=106.1

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHH----CC-CCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKA----VG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~----~g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i   75 (358)
                      +++||||.|+||+-   ..||.++|+ .++.+++..++.+..    .+ .-..+|.++. .+++++++++++... +..+
T Consensus        59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~-~~~v  134 (420)
T PF01704_consen   59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL-DVDV  134 (420)
T ss_dssp             EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS-SCCE
T ss_pred             EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC-Ccce
Confidence            56799999999987   789999999 577788888776664    23 2345666666 578899999984321 1122


Q ss_pred             EEecc-----------------C--C-------cCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018327           76 ICSQE-----------------T--E-------PLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEF  124 (358)
Q Consensus        76 ~~~~~-----------------~--~-------~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~  124 (358)
                      .+..|                 .  .       |-|.++-....     ++.+....-+.+.+.+.|.+...-=..++..
T Consensus       135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~  214 (420)
T PF01704_consen  135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY  214 (420)
T ss_dssp             EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred             EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence            21110                 0  0       23565522221     1223223334999999999443222467788


Q ss_pred             HHhcCCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCCC--------CCCCeEEEEEEEEChhhhhhcc
Q 018327          125 HKAHGGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRIE  185 (358)
Q Consensus       125 ~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l~  185 (358)
                      +.+++.+..+-+   ..+ ..-|++...+  |+  +.++.+-|.+        ......+++-.+|+-++++.+.
T Consensus       215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~--G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~  287 (420)
T PF01704_consen  215 MIEKNADFGMEVVPKTSPDEKGGVLCRYD--GKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLL  287 (420)
T ss_dssp             HHHTT-SEEEEEEE-CSTTTSSEEEEEET--TEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHH
T ss_pred             HHhccchhheeeeecCCCCCceeEEEEeC--CccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHH
Confidence            888888777666   222 4556666432  54  5555554431        1234678888899988888663

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=97.18  E-value=0.006  Score=56.67  Aligned_cols=176  Identities=24%  Similarity=0.293  Sum_probs=104.2

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHHC----CC-CEEEEEeccChHHHHHHHHhhhhccCc---
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKEFEAKLGI---   73 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~~----gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~---   73 (358)
                      ++.||||.|+||+-   ..||.+++|. |+++++.+.+.++.+    ++ -..++.++...++...++... +.++.   
T Consensus       108 vl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~~~~k~  183 (472)
T COG4284         108 VLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYFGLDKE  183 (472)
T ss_pred             EEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhcCCCHH
Confidence            57799999999988   7899999998 999998887766554    32 244666666666777776641 11111   


Q ss_pred             EEEEec-----------------------cCCcCCCch---HHHH--HHhhccCCCCCcEEEEeCCeeeccCH-HHHHHH
Q 018327           74 KIICSQ-----------------------ETEPLGTAG---PLAL--ARDKLIDDTGEPFFVLNSDVISEYPF-AEMIEF  124 (358)
Q Consensus        74 ~i~~~~-----------------------~~~~~g~~~---sl~~--~~~~i~~~~~~~~lv~~gD~i~~~~l-~~~~~~  124 (358)
                      .|.+..                       ..-|.|.++   ++..  ..+.+...+-+.+.|.+.|.+ ...+ -.++.+
T Consensus       184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL-~~~vD~~~lg~  262 (472)
T COG4284         184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNL-GATVDLKFLGF  262 (472)
T ss_pred             HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccc-ccccCHHHHHH
Confidence            111110                       112345543   3332  222222233348889999993 3333 356677


Q ss_pred             HHhcCCeeEEEe----cCCCCeeeEE-EcCCCCcEEEEeecCCCC----CCC------eEE-EEEEEEChhhhhhc
Q 018327          125 HKAHGGEASIMV----DEPSKYGVVV-MEESTGKVEKFVEKPKLF----VGN------KIN-AGIYLLNPAVLDRI  184 (358)
Q Consensus       125 ~~~~~~~~~~~~----~~~~~~~~~~-~d~~~~~v~~~~ek~~~~----~~~------~~~-~Giy~~~~~~l~~l  184 (358)
                      +.+.+.+.++-+    +....-|++. .|.. -+++++.+-|...    .+.      ..+ .++++++-+.+...
T Consensus       263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~  337 (472)
T COG4284         263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA  337 (472)
T ss_pred             HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence            777777776665    2234556665 6665 6888888776521    111      123 66777766665543

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=97.06  E-value=0.0016  Score=58.17  Aligned_cols=140  Identities=14%  Similarity=0.195  Sum_probs=84.9

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHHCC---------CCEEEEEecc-ChHHHHHHHHhhhh
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAVG---------VTEVVLAINY-QPEVMLNFLKEFEA   69 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~~g---------i~~i~vv~~~-~~~~i~~~l~~~~~   69 (358)
                      +|+||+|.|+||+-   +.||.++|+   .|+++++...+++.+..         .=..+|.++. .++++++++++.. 
T Consensus         3 ~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~-   78 (315)
T cd06424           3 FVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN-   78 (315)
T ss_pred             EEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC-
Confidence            68899999999987   799999999   49999999988776532         2355777776 4688999998621 


Q ss_pred             ccCc---EEEEec------------------------cCCcCCCchHHHHHH------hhccCCCCCcEEEEeCCeeecc
Q 018327           70 KLGI---KIICSQ------------------------ETEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVISEY  116 (358)
Q Consensus        70 ~~~~---~i~~~~------------------------~~~~~g~~~sl~~~~------~~i~~~~~~~~lv~~gD~i~~~  116 (358)
                      .+|.   .+.+..                        ...|-|.++ ++.++      +.+.+..-+.+.+...|.+...
T Consensus        79 yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGd-iy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~  157 (315)
T cd06424          79 YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGD-VHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF  157 (315)
T ss_pred             ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchH-HHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence            1111   111111                        122445554 33322      2232233337778788875443


Q ss_pred             C-HHHHHHHHHhcCCeeEEEe---cCCCCeeeEEE
Q 018327          117 P-FAEMIEFHKAHGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus       117 ~-l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  147 (358)
                      . ...++-.+.+.+.++...+   ...+.-|+++.
T Consensus       158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~  192 (315)
T cd06424         158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCK  192 (315)
T ss_pred             ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEE
Confidence            3 3455555555666665544   33356676653

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.69  E-value=0.028  Score=43.95  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             cccCC-cchHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|..| .+++.++++++.+.+  ..+++++.+...++..+.+.++.+. ...+.........|.+.++..+.+..  .. 
T Consensus         3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~--~~-   78 (156)
T cd00761           3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAA--RG-   78 (156)
T ss_pred             EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHh--cC-
Confidence            34444 479999999999997  7888888888777777777765332 12233344555668888888888777  33 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHH
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHK  126 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~  126 (358)
                      +.++++.+|.++..+ +..++..+.
T Consensus        79 d~v~~~d~D~~~~~~~~~~~~~~~~  103 (156)
T cd00761          79 EYILFLDADDLLLPDWLERLVAELL  103 (156)
T ss_pred             CEEEEECCCCccCccHHHHHHHHHh
Confidence            389999999987766 555544443

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PLN02830 UDP-sugar pyrophosphorylase

Probab=96.58  E-value=0.046  Score=53.60  Aligned_cols=140  Identities=15%  Similarity=0.205  Sum_probs=87.6

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------C----CCEEEEEecc-ChHHHHHHHHh
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------G----VTEVVLAINY-QPEVMLNFLKE   66 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------g----i~~i~vv~~~-~~~~i~~~l~~   66 (358)
                      +|+||+|.|+||+-   ..||.++|++   |+++++..++.+.+.        +    .-..+|.++. .++++.+++++
T Consensus       131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~  207 (615)
T PLN02830        131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER  207 (615)
T ss_pred             EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence            57799999999987   7899999983   999999999887654        1    2246777776 46789999997


Q ss_pred             hhhccCc---EEEEecc------------------------CCcCCCchHHHHHH------hhccCCCCCcEEEEeCCee
Q 018327           67 FEAKLGI---KIICSQE------------------------TEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVI  113 (358)
Q Consensus        67 ~~~~~~~---~i~~~~~------------------------~~~~g~~~sl~~~~------~~i~~~~~~~~lv~~gD~i  113 (358)
                      . ..+|.   .+.+..|                        ..|-|.++ ++.++      +.+....-+++.+...|.+
T Consensus       208 n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~~yi~v~~vDN~  285 (615)
T PLN02830        208 N-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGD-VHALLYSSGLLDKWLSAGKKWVVFFQDTNG  285 (615)
T ss_pred             C-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccH-HHHHHHHCCCHHHHHHcCCEEEEEEeccch
Confidence            3 12221   1221111                        12334444 22222      2232233348889999994


Q ss_pred             ecc-CHHHHHHHHHhcCCeeEEEe--c-CCCCeeeEEE
Q 018327          114 SEY-PFAEMIEFHKAHGGEASIMV--D-EPSKYGVVVM  147 (358)
Q Consensus       114 ~~~-~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~  147 (358)
                      ... ....++-.+..++.++.+.+  . ..+.-|+++.
T Consensus       286 L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~~  323 (615)
T PLN02830        286 LVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIAK  323 (615)
T ss_pred             hhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEEE
Confidence            332 24778888888877776665  2 2345565554

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.44  E-value=0.022  Score=45.62  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=72.4

Q ss_pred             cccCCcc-hHHHHHHHHHHC--CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFANKP-MILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|.-|++ .|..+|+.+.+.  ...+++|+-+...++..+.++++.+ .+..+.+....+..|...+...+.+..  ..+
T Consensus         4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a--~~~   80 (169)
T PF00535_consen    4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHA--KGE   80 (169)
T ss_dssp             EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SS
T ss_pred             EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccc--cee
Confidence            5666664 899999999887  3556666665555667777777544 234455555555558888888888887  444


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM  135 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~  135 (358)
                       .++++..|.+...+ +..+++.+.+.+.++.+.
T Consensus        81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~  113 (169)
T PF00535_consen   81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIG  113 (169)
T ss_dssp             -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred             -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence             89999999988777 899999988866654444

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=95.89  E-value=0.018  Score=54.11  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=46.4

Q ss_pred             CCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCc
Q 018327          274 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  328 (358)
Q Consensus       274 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~  328 (358)
                      ..+.+...+.|.||++..++.++++++|++|.++.++.||++|.|.+ +.+..+.
T Consensus       272 ~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG-v~~~~~~  325 (414)
T PF07959_consen  272 TPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG-VDINSWS  325 (414)
T ss_pred             cccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC-Ccccccc
Confidence            44567888899999999999999999999999999999999999998 6554443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=95.57  E-value=0.18  Score=40.28  Aligned_cols=100  Identities=24%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|.-|++ .|..+|+.+.+..  ..+++|+-+...+...+.+.++.......+.+....+..|.+.+...+.+..  ..+
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~   80 (180)
T cd06423           3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGD   80 (180)
T ss_pred             ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCC
Confidence            5665664 8889999998875  4566666555555666666665433223344455556678888888888877  443


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                       .++++.+|.+...+ +..++..+.+.
T Consensus        81 -~i~~~D~D~~~~~~~l~~~~~~~~~~  106 (180)
T cd06423          81 -IVVVLDADTILEPDALKRLVVPFFAD  106 (180)
T ss_pred             -EEEEECCCCCcChHHHHHHHHHhccC
Confidence             88999999977655 67775555443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=95.45  E-value=0.024  Score=48.00  Aligned_cols=108  Identities=23%  Similarity=0.339  Sum_probs=49.7

Q ss_pred             CeEEEEecCCc---cccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEE
Q 018327            1 MKALILVGGFG---TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIIC   77 (358)
Q Consensus         1 m~avIla~G~g---~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~   77 (358)
                      |++||+.-..+   |||.+.-   +..--.=.-+-|+..++..+..  ++ +++|+..  +.+..+-.   ...++.+..
T Consensus         1 m~~VIPvK~~~~aKSRLs~~L---~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~---~~~g~~vl~   69 (217)
T PF01983_consen    1 MRAVIPVKPLARAKSRLSPVL---SPEEREALALAMLRDVLAALRA--VD-VVVVSRD--PEVAALAR---ARLGAEVLP   69 (217)
T ss_dssp             -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT------SSEEEE
T ss_pred             CeEEEEcCCCCccccccCccC---CHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhh---hccCCeEec
Confidence            88999886555   6776531   1111111134588999999977  66 6666553  22221111   144666543


Q ss_pred             eccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018327           78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH  125 (358)
Q Consensus        78 ~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~  125 (358)
                        +. ..|.-.++.++....  .. ++++++++|+  +...++..+++..
T Consensus        70 --d~-~~gLN~Al~~a~~~~--~~-~~vlvl~aDLPll~~~dl~~~l~~~  113 (217)
T PF01983_consen   70 --DP-GRGLNAALNAALAAA--GD-DPVLVLPADLPLLTPEDLDALLAAA  113 (217)
T ss_dssp             ------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred             --CC-CCCHHHHHHHHHhcc--CC-CceEEeecCCccCCHHHHHHHHhcc
Confidence              22 457777888774333  33 4999999999  5556677777653

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=95.37  E-value=0.31  Score=39.82  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             CeEEEEec---CCccccCcCCC-CCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVG---GFGTRLRPLTL-SVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~---G~g~rl~~~t~-~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~   76 (358)
                      |.+||+-.   +.=+||.|.-+ +.-+.|+    .-|+..++..+... +.+|.|++..  +++..+..+      .++ 
T Consensus         1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~~------~~v-   66 (210)
T COG1920           1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPATK------LEV-   66 (210)
T ss_pred             CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhccc------cee-
Confidence            77888654   55677776522 1111111    24788888888765 7889988875  233222222      122 


Q ss_pred             EeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018327           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH  125 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~  125 (358)
                       ...   .+.-.++.++.+.+...  +.++|+.+|+  +...+++++++..
T Consensus        67 -l~d---~dLN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~~  111 (210)
T COG1920          67 -LAD---PDLNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSAA  111 (210)
T ss_pred             -eec---cchHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHhc
Confidence             111   22456788888777432  3799999999  3444577777653

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=95.14  E-value=0.37  Score=41.66  Aligned_cols=107  Identities=9%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             cccCCcc-hHHHHHHHHHHCCCC----EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327           26 VEFANKP-MILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~gi~----~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~  100 (358)
                      +|.-|.+ .|..+|+++.+....    +++||.+...+...+.++++.......+.........|.+.++..+.+..  .
T Consensus         7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~   84 (241)
T cd06427           7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--R   84 (241)
T ss_pred             EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--C
Confidence            4555554 788899999876432    45565555556666666665322234555544445557788888888776  4


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM  135 (358)
Q Consensus       101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~  135 (358)
                      . +.++++.+|.....+ +..+++.+.+...+..++
T Consensus        85 g-d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~  119 (241)
T cd06427          85 G-EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV  119 (241)
T ss_pred             C-CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence            4 388899999987766 788888876543444333

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=95.03  E-value=0.47  Score=39.50  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             ccccCCcc---hHHHHHHHHHHCCC--CEEEEEeccC-hHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           25 LVEFANKP---MILHQIEALKAVGV--TEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        25 llpi~g~p---li~~~l~~l~~~gi--~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      ++|..|..   .|+.+|+++.+...  .+++||-+.. .+.+.+.++++.+..+  +.+.......|.+.+...+.... 
T Consensus         3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a-   79 (201)
T cd04195           3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHC-   79 (201)
T ss_pred             EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhc-
Confidence            45666553   89999999988752  4555554443 4566666666655444  33333344467788887777765 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                       .. +.++++.+|.+...+ ++.+++.+.++
T Consensus        80 -~g-d~i~~lD~Dd~~~~~~l~~~~~~~~~~  108 (201)
T cd04195          80 -TY-DWVARMDTDDISLPDRFEKQLDFIEKN  108 (201)
T ss_pred             -CC-CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence             34 388899999977766 78888876543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=94.73  E-value=0.63  Score=37.02  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|.-|++ ++..+++++.+..  ..+++|+-+...+...+.+.++..    .+.+.......|.+.+...+.+..  ..+
T Consensus         3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~--~~~   76 (166)
T cd04186           3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREA--KGD   76 (166)
T ss_pred             EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhC--CCC
Confidence            4555554 8999999998764  456666666555666666665322    333344455668888888888877  443


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                       .++++..|.+...+ +..+.+.+.+.
T Consensus        77 -~i~~~D~D~~~~~~~l~~~~~~~~~~  102 (166)
T cd04186          77 -YVLLLNPDTVVEPGALLELLDAAEQD  102 (166)
T ss_pred             -EEEEECCCcEECccHHHHHHHHHHhC
Confidence             78888888877665 77777765543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=94.41  E-value=0.54  Score=38.44  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             cccCCcc-hHHHHHHHHHHCC----CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327           26 VEFANKP-MILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~  100 (358)
                      +|..|.+ .|..+|+.+.+..    ..+++|+-+...+...+.++++..... .+.+....+..|.+.+...+.+..  .
T Consensus         3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a--~   79 (185)
T cd04179           3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAA--R   79 (185)
T ss_pred             ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHh--c
Confidence            4555554 7788888887773    566666665555556666665443332 223444555668888888888877  4


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM  135 (358)
Q Consensus       101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~  135 (358)
                      . +.++++.+|.....+ +..+++.....+.++.+.
T Consensus        80 g-d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g  114 (185)
T cd04179          80 G-DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG  114 (185)
T ss_pred             C-CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence            4 388999999866655 788888755555444433

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=94.20  E-value=0.56  Score=39.53  Aligned_cols=106  Identities=11%  Similarity=0.101  Sum_probs=65.6

Q ss_pred             cccCCcc-hHHHHHHHHHHC------CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           26 VEFANKP-MILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~------gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      +|.-|.. .|..+|+.+.+.      ..-+++|+-+...+...+.++++....+..+.+.......|.+.++..+.+.. 
T Consensus         3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a-   81 (211)
T cd04188           3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAA-   81 (211)
T ss_pred             EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHh-
Confidence            4454433 667777777654      23456665554555666666665444333234444555568888898888877 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~  134 (358)
                       .. +.++++.+|.....+ +..+++...+.+.++.+
T Consensus        82 -~g-d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  116 (211)
T cd04188          82 -RG-DYILFADADLATPFEELEKLEEALKTSGYDIAI  116 (211)
T ss_pred             -cC-CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence             44 388999999977655 78888775554444433

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=93.88  E-value=0.89  Score=39.36  Aligned_cols=103  Identities=16%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             CCCCCC--cccccCCcc-hHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHH
Q 018327           18 TLSVPK--PLVEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPL   90 (358)
Q Consensus        18 t~~~pK--~llpi~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl   90 (358)
                      ....|+  -++|..|.. .|..+|+.+.....    -+++|+.+...+...+.++++... +  +.+.......|.+.++
T Consensus        25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~--v~~i~~~~~~g~~~a~  101 (251)
T cd06439          25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-G--VKLLRFPERRGKAAAL  101 (251)
T ss_pred             CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-c--EEEEEcCCCCChHHHH
Confidence            344555  566776665 78888988877642    256666666556677777765433 3  3333444556778888


Q ss_pred             HHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327           91 ALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (358)
Q Consensus        91 ~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~  126 (358)
                      ..+.+..  .. +.++++.+|.+...+ ++.+++.+.
T Consensus       102 n~gi~~a--~~-d~i~~lD~D~~~~~~~l~~l~~~~~  135 (251)
T cd06439         102 NRALALA--TG-EIVVFTDANALLDPDALRLLVRHFA  135 (251)
T ss_pred             HHHHHHc--CC-CEEEEEccccCcCHHHHHHHHHHhc
Confidence            8888777  33 489999999977765 788888764

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.77  E-value=0.85  Score=38.18  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             cccCCcc-hHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|.-|.+ .|..+|+++.+...  -+++|+-+...+...+.++++....+..+.+.......|.+.++..+....  .. 
T Consensus         4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g-   80 (214)
T cd04196           4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DG-   80 (214)
T ss_pred             EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CC-
Confidence            4555555 78899999887653  245555444445566666665544433444455555667777777776555  34 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                      +.++++..|.+...+ +..+++...+.
T Consensus        81 ~~v~~ld~Dd~~~~~~l~~~~~~~~~~  107 (214)
T cd04196          81 DYVFFCDQDDIWLPDKLERLLKAFLKD  107 (214)
T ss_pred             CEEEEECCCcccChhHHHHHHHHHhcC
Confidence            388888889876655 78888774443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=93.23  E-value=1  Score=38.16  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             cccCCcc-hHHHHHHHHHHCC---CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327           26 VEFANKP-MILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~  101 (358)
                      +|.-|.+ .|..+|+.+...-   .-+++||-+...+...+.++++.+... .+.+.......|.+.++..+.+..  ..
T Consensus         3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a--~g   79 (224)
T cd06442           3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAA--RG   79 (224)
T ss_pred             EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHc--CC
Confidence            4555554 7888888887653   345555554444556666666544332 223344455568888888888777  34


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeE
Q 018327          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS  133 (358)
Q Consensus       102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~  133 (358)
                       +.++++.+|.....+ +..+++.....+.++.
T Consensus        80 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v  111 (224)
T cd06442          80 -DVIVVMDADLSHPPEYIPELLEAQLEGGADLV  111 (224)
T ss_pred             -CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence             388899999876655 7888887555544443

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=93.18  E-value=1.9  Score=36.74  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=63.8

Q ss_pred             ccccCCcc--hHHHHHHHHHHCCCC----EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCC-CchHHHHHHhhc
Q 018327           25 LVEFANKP--MILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKL   97 (358)
Q Consensus        25 llpi~g~p--li~~~l~~l~~~gi~----~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~sl~~~~~~i   97 (358)
                      .+|.-|.+  ++..+|+.+......    +++||-+...+...+.++++.....+.+.  ......| .+.++..+.+..
T Consensus         6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~~~~a   83 (234)
T cd06421           6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYL--TRPDNRHAKAGNLNNALAHT   83 (234)
T ss_pred             EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEE--EeCCCCCCcHHHHHHHHHhC
Confidence            35666653  789999999887643    56666665667777777776543333332  2222223 455566777665


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKA  127 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~  127 (358)
                        ..+ .++++..|.+.+.+ +..+++.+.+
T Consensus        84 --~~d-~i~~lD~D~~~~~~~l~~l~~~~~~  111 (234)
T cd06421          84 --TGD-FVAILDADHVPTPDFLRRTLGYFLD  111 (234)
T ss_pred             --CCC-EEEEEccccCcCccHHHHHHHHHhc
Confidence              443 88899999988777 7888887765

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=92.16  E-value=2  Score=35.27  Aligned_cols=96  Identities=14%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             cccCCcc-hHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327           26 VEFANKP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG  102 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~  102 (358)
                      +|.-|.+ .|+.+|+.+.+....  +++||-+...+...+.++++...    +.+....+..|.+.++..+.+..  .. 
T Consensus         4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a--~~-   76 (202)
T cd06433           4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALA--TG-   76 (202)
T ss_pred             EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHc--CC-
Confidence            3444444 889999999877655  45555443445666666664332    22223344557788888888776  33 


Q ss_pred             CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          103 EPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                      +.++++..|.....+ +..++..+.+.
T Consensus        77 ~~v~~ld~D~~~~~~~~~~~~~~~~~~  103 (202)
T cd06433          77 DIIGFLNSDDTLLPGALLAVVAAFAEH  103 (202)
T ss_pred             CEEEEeCCCcccCchHHHHHHHHHHhC
Confidence            388889999866554 77777554443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=92.12  E-value=1.7  Score=37.33  Aligned_cols=99  Identities=14%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             cccCCc-chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327           26 VEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (358)
Q Consensus        26 lpi~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~  100 (358)
                      +|.-|. +.+..+|+.+.+...    -+++|+-+...++..+.++.+.... ..+.+... ...|.+.++..+.+..  .
T Consensus         6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~-~~v~~i~~-~~~~~~~a~N~g~~~a--~   81 (249)
T cd02525           6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKD-PRIRLIDN-PKRIQSAGLNIGIRNS--R   81 (249)
T ss_pred             EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcC-CeEEEEeC-CCCCchHHHHHHHHHh--C
Confidence            344444 478888999987654    3566666655666777777654432 23333333 3346667777777776  3


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (358)
Q Consensus       101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~  129 (358)
                      . +.++++.+|.....+ +..+++.+.+.+
T Consensus        82 ~-d~v~~lD~D~~~~~~~l~~~~~~~~~~~  110 (249)
T cd02525          82 G-DIIIRVDAHAVYPKDYILELVEALKRTG  110 (249)
T ss_pred             C-CEEEEECCCccCCHHHHHHHHHHHhcCC
Confidence            4 388899999977655 788887665443

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=91.94  E-value=1.9  Score=35.83  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             ccCCc-chHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327           27 EFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE  103 (358)
Q Consensus        27 pi~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~  103 (358)
                      |--|. ..|..+|+.+.+...  .+++|+-+...+...+.++++....+  +.+....+..|.+.++-.+.+.......+
T Consensus         4 ~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d   81 (202)
T cd04185           4 VTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYD   81 (202)
T ss_pred             EeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCC
Confidence            34344 378999999987642  35666555555677777777544433  33444444556666666555544222234


Q ss_pred             cEEEEeCCeeeccC-HHHHHHHHH
Q 018327          104 PFFVLNSDVISEYP-FAEMIEFHK  126 (358)
Q Consensus       104 ~~lv~~gD~i~~~~-l~~~~~~~~  126 (358)
                      .++++..|.+...+ ++.+++...
T Consensus        82 ~v~~ld~D~~~~~~~l~~l~~~~~  105 (202)
T cd04185          82 WIWLMDDDAIPDPDALEKLLAYAD  105 (202)
T ss_pred             EEEEeCCCCCcChHHHHHHHHHHh
Confidence            78888999988766 677777665

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK11204 N-glycosyltransferase; Provisional

Probab=91.93  E-value=1.9  Score=40.70  Aligned_cols=100  Identities=19%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             ccccCCc-chHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327           25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~  101 (358)
                      ++|.-|. ..|..+++++.+..-  -+++|+-+...++..+.++++.+... .+.+....+..|.+.++..+.+..  ..
T Consensus        59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a--~~  135 (420)
T PRK11204         59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAA--RS  135 (420)
T ss_pred             EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHc--CC
Confidence            4566555 489999999887652  35666555455666666666544322 234444344567888888888776  44


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          102 GEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                       |.++++.+|.+...+ +.++++.+.+.
T Consensus       136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~  162 (420)
T PRK11204        136 -EYLVCIDGDALLDPDAAAYMVEHFLHN  162 (420)
T ss_pred             -CEEEEECCCCCCChhHHHHHHHHHHhC
Confidence             389999999987766 78888877554

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=91.89  E-value=0.55  Score=34.61  Aligned_cols=82  Identities=13%  Similarity=0.166  Sum_probs=35.7

Q ss_pred             EECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          259 QIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       259 ~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      .|++++.+.++......+.|...  +. +......+.|+.++.+.+.+-.+++.|...  +.......+...|...+.+.
T Consensus         4 ~I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~   79 (101)
T PF04519_consen    4 IIGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVE   79 (101)
T ss_pred             EECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEE
Confidence            34444444434444444444332  33 333333555555555555544444444322  33323333444455555554


Q ss_pred             CcEEccC
Q 018327          338 GGVVLPH  344 (358)
Q Consensus       338 ~~~v~~~  344 (358)
                      |.+..+.
T Consensus        80 G~i~~~~   86 (101)
T PF04519_consen   80 GDITAGK   86 (101)
T ss_pred             EEEEECE
Confidence            4443333

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=91.64  E-value=1.8  Score=35.24  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             cccCCcc-hHHHHHHHHHHC-----CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327           26 VEFANKP-MILHQIEALKAV-----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID   99 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~-----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~   99 (358)
                      +|.-|.+ .|..+++.+...     ..-+++|+-+...+...+.++++..... .+.+....+..|.+.++..+....  
T Consensus         3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a--   79 (181)
T cd04187           3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHA--   79 (181)
T ss_pred             EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhc--
Confidence            3444444 455555555332     2336666666555666666666543322 333344445568888888887776  


Q ss_pred             CCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCee
Q 018327          100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (358)
Q Consensus       100 ~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~  132 (358)
                      .. +.++++.+|.....+ ++.+++. .+.+.++
T Consensus        80 ~~-d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~  111 (181)
T cd04187          80 RG-DAVITMDADLQDPPELIPEMLAK-WEEGYDV  111 (181)
T ss_pred             CC-CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence            33 388999999977655 7788776 3334443

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=91.34  E-value=3.2  Score=37.20  Aligned_cols=102  Identities=13%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             cccCCc--chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHh-hhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           26 VEFANK--PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        26 lpi~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~-~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      +|.-|.  ..|..+|+++.+...    .+|+||=+...+.....+.+ ........+.++......|-+.+.-.+.+.. 
T Consensus         4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A-   82 (299)
T cd02510           4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAA-   82 (299)
T ss_pred             EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHc-
Confidence            345444  488899999876542    26666655544544444433 1112222344444455567777777777666 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~  130 (358)
                       ..+ .++++.+|.....+ +..+++.+.+...
T Consensus        83 -~gd-~i~fLD~D~~~~~~wL~~ll~~l~~~~~  113 (299)
T cd02510          83 -TGD-VLVFLDSHCEVNVGWLEPLLARIAENRK  113 (299)
T ss_pred             -cCC-EEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence             443 89999999977666 8999988776543

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=91.14  E-value=2.9  Score=35.75  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=59.7

Q ss_pred             ccccCCc-c-hHHHHHHHHHHCCC--CEEEEEeccChHH-HHHHHHhhhhccCcEEEEeccCCcCC-CchHHHHHHhhcc
Q 018327           25 LVEFANK-P-MILHQIEALKAVGV--TEVVLAINYQPEV-MLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKLI   98 (358)
Q Consensus        25 llpi~g~-p-li~~~l~~l~~~gi--~~i~vv~~~~~~~-i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~sl~~~~~~i~   98 (358)
                      ++|.-|. | +|..+|+.+.+...  -+++||-+...+. ..+.++++.+..+..+.++......| .+.++-.+.+...
T Consensus         3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~   82 (236)
T cd06435           3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA   82 (236)
T ss_pred             eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence            3566665 3 79999999988763  3555555443332 22333333322333343333333345 3677777777663


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~  126 (358)
                      ... +.++++..|.....+ +..+++.+.
T Consensus        83 ~~~-d~i~~lD~D~~~~~~~l~~l~~~~~  110 (236)
T cd06435          83 PDA-EIIAVIDADYQVEPDWLKRLVPIFD  110 (236)
T ss_pred             CCC-CEEEEEcCCCCcCHHHHHHHHHHhc
Confidence            223 388999999977666 788887764

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=91.04  E-value=4.2  Score=33.22  Aligned_cols=99  Identities=16%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             ccccCCc-chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc-
Q 018327           25 LVEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI-   98 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~-   98 (358)
                      ++|.-|. ..|..+|+.+.+...    .+++|+.+...+...+.++++    +..+.........|.+.++..+..... 
T Consensus         2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~   77 (183)
T cd06438           2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLN   77 (183)
T ss_pred             EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            3456554 488888999877643    356666666556666665543    233333223344577777777776652 


Q ss_pred             -CCCCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327           99 -DDTGEPFFVLNSDVISEYP-FAEMIEFHKA  127 (358)
Q Consensus        99 -~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~  127 (358)
                       ....+.++++.+|.....+ +..++..+.+
T Consensus        78 ~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~  108 (183)
T cd06438          78 LADDPDAVVVFDADNLVDPNALEELNARFAA  108 (183)
T ss_pred             cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence             1123378899999988766 7888877654

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=90.81  E-value=3.8  Score=34.86  Aligned_cols=89  Identities=18%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018327           32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD  111 (358)
Q Consensus        32 pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD  111 (358)
                      +.|..+|+.+.+....+++||.+...+...+.+....+...+.+.  . .+..|...++..+.+..  ..+ .++++.+|
T Consensus        14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~--~-~~~~g~~~a~n~g~~~a--~~d-~v~~lD~D   87 (235)
T cd06434          14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVI--T-VPHPGKRRALAEGIRHV--TTD-IVVLLDSD   87 (235)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEE--e-cCCCChHHHHHHHHHHh--CCC-EEEEECCC
Confidence            589999999988766777777776666666665432222222332  2 23347777777777666  443 88999999


Q ss_pred             eeeccC-HHHHHHHHH
Q 018327          112 VISEYP-FAEMIEFHK  126 (358)
Q Consensus       112 ~i~~~~-l~~~~~~~~  126 (358)
                      .....+ ++.+++.+.
T Consensus        88 ~~~~~~~l~~l~~~~~  103 (235)
T cd06434          88 TVWPPNALPEMLKPFE  103 (235)
T ss_pred             ceeChhHHHHHHHhcc
Confidence            988776 788887765

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=90.57  E-value=14  Score=34.23  Aligned_cols=60  Identities=30%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             EecCCccccCcCCCCCCCccccc-CCcchHHH---HHHHHHHC-CCC-EEEEEecc-ChHHHHHHHHhhh
Q 018327            6 LVGGFGTRLRPLTLSVPKPLVEF-ANKPMILH---QIEALKAV-GVT-EVVLAINY-QPEVMLNFLKEFE   68 (358)
Q Consensus         6 la~G~g~rl~~~t~~~pK~llpi-~g~pli~~---~l~~l~~~-gi~-~i~vv~~~-~~~~i~~~l~~~~   68 (358)
                      |-||.|+-|+=   ..||.+.++ .|...++-   +++.|.+. +++ ..++.-+. ..++..++++++.
T Consensus       109 LNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~  175 (498)
T KOG2638|consen  109 LNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA  175 (498)
T ss_pred             ecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence            77999999987   789999999 57776654   45555433 333 23444443 3577888888753

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=90.17  E-value=3.1  Score=35.16  Aligned_cols=100  Identities=15%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             cccCCcc-hHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhh-hccCcEEEEeccC--CcCCCchHHHHHHhhc
Q 018327           26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFE-AKLGIKIICSQET--EPLGTAGPLALARDKL   97 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~-~~~~~~i~~~~~~--~~~g~~~sl~~~~~~i   97 (358)
                      +|..|.+ .|..+|+.+.....    -+|+||-+...+...+.+. +. ...+..+......  ...|...++..+....
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~   81 (229)
T cd04192           3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA   81 (229)
T ss_pred             EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHHHh
Confidence            5665555 78999999877643    2455555444444444444 11 1222333333332  2345556666666554


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG  129 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~  129 (358)
                        .. +.++++.+|.+...+ ++.+++.+.+..
T Consensus        82 --~~-d~i~~~D~D~~~~~~~l~~l~~~~~~~~  111 (229)
T cd04192          82 --KG-DWIVTTDADCVVPSNWLLTFVAFIQKEQ  111 (229)
T ss_pred             --cC-CEEEEECCCcccCHHHHHHHHHHhhcCC
Confidence              33 388899999977766 788888665543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=90.03  E-value=3.7  Score=35.44  Aligned_cols=107  Identities=12%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             ccccCCc-chHHHHHHHHHHCC----CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           25 LVEFANK-PMILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      .+|.-|. ..|..+++.+.+.-    --+++|+-+...+...+.++++.+.++ ..+.........|.+.++..+.... 
T Consensus        14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a-   92 (243)
T PLN02726         14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHA-   92 (243)
T ss_pred             EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHc-
Confidence            3444444 46677776665421    225555555445666666666544332 2343444444567777888777766 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~  134 (358)
                       ..+ .++++.+|...+.+ +..+++...+.+.++..
T Consensus        93 -~g~-~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  127 (243)
T PLN02726         93 -SGD-FVVIMDADLSHHPKYLPSFIKKQRETGADIVT  127 (243)
T ss_pred             -CCC-EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence             343 88899999976654 78888876655554443

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=89.94  E-value=3.3  Score=33.58  Aligned_cols=97  Identities=19%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC-CcCCCchHHHHHHhhccCCC
Q 018327           26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-EPLGTAGPLALARDKLIDDT  101 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~g~~~sl~~~~~~i~~~~  101 (358)
                      +|.-|.+ .+..+|+++.+..  ..+++|+-+...+...+.++++....+..+...... ...+.+.+...+.+..  ..
T Consensus         3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g   80 (182)
T cd06420           3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KG   80 (182)
T ss_pred             EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cC
Confidence            4555555 7889999997753  346666655556667777776544333333333222 2234445555555555  33


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHH
Q 018327          102 GEPFFVLNSDVISEYP-FAEMIEFH  125 (358)
Q Consensus       102 ~~~~lv~~gD~i~~~~-l~~~~~~~  125 (358)
                       +.++++..|.+...+ +..+++.+
T Consensus        81 -~~i~~lD~D~~~~~~~l~~~~~~~  104 (182)
T cd06420          81 -DYLIFIDGDCIPHPDFIADHIELA  104 (182)
T ss_pred             -CEEEEEcCCcccCHHHHHHHHHHh
Confidence             388899999977665 67777655

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=89.40  E-value=5.8  Score=32.86  Aligned_cols=97  Identities=11%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             cccCC-cchHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCcCCC---chHHHHHHhhcc
Q 018327           26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGT---AGPLALARDKLI   98 (358)
Q Consensus        26 lpi~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~---~~sl~~~~~~i~   98 (358)
                      +|.-| .+.|..+|+++.+..  .-+++||.+...+...+.++++.+.+. ..+.+.......|.   +.++..+.+.. 
T Consensus         7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a-   85 (196)
T cd02520           7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEA-   85 (196)
T ss_pred             EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhC-
Confidence            45543 347888999988754  235666666555555566655433322 33333333322232   33444555554 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFH  125 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~  125 (358)
                       .. +.++++.+|.....+ +..+++.+
T Consensus        86 -~~-d~i~~~D~D~~~~~~~l~~l~~~~  111 (196)
T cd02520          86 -RY-DILVISDSDISVPPDYLRRMVAPL  111 (196)
T ss_pred             -CC-CEEEEECCCceEChhHHHHHHHHh
Confidence             33 388888999977665 77777764

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=89.36  E-value=3.7  Score=39.25  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=64.8

Q ss_pred             cccccCCcc-hHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327           24 PLVEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID   99 (358)
Q Consensus        24 ~llpi~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~~   99 (358)
                      -++|..|.+ .|..+++++.+..-  -+++++-+...++..+.++++.+.. .+.+.  ...+..|.+.++..+....  
T Consensus        79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv--~~~~n~Gka~AlN~gl~~a--  154 (444)
T PRK14583         79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVI--HLAHNQGKAIALRMGAAAA--  154 (444)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEE--EeCCCCCHHHHHHHHHHhC--
Confidence            566776665 78899999887642  3666665555555666666544332 34433  3233457777777777665  


Q ss_pred             CCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327          100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       100 ~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                      .. |.++++.+|.+.+.+ +..+++.+.+.
T Consensus       155 ~~-d~iv~lDAD~~~~~d~L~~lv~~~~~~  183 (444)
T PRK14583        155 RS-EYLVCIDGDALLDKNAVPYLVAPLIAN  183 (444)
T ss_pred             CC-CEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence            34 389999999988766 77887776544

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=88.18  E-value=5.8  Score=37.86  Aligned_cols=99  Identities=14%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             ccccCCcc-hHHHHHHHHHHCCC--C--EEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           25 LVEFANKP-MILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        25 llpi~g~p-li~~~l~~l~~~gi--~--~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      ++|.-|.. .|..+++++.+...  +  +|+|+-+...++..+.++++.+.. ++.+...  ....|-+.++-.+.+.. 
T Consensus        54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s-  130 (439)
T TIGR03111        54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNS-  130 (439)
T ss_pred             EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHc-
Confidence            45665544 88999999987753  2  355555545566666666543332 3444333  23357788888888776 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                       .. +.++++.+|.+.+.+ ++.+++.+.+.
T Consensus       131 -~g-~~v~~~DaD~~~~~d~L~~l~~~f~~~  159 (439)
T TIGR03111       131 -IG-KYIIHIDSDGKLHKDAIKNMVTRFENN  159 (439)
T ss_pred             -cC-CEEEEECCCCCcChHHHHHHHHHHHhC
Confidence             34 388899999988766 78888877644

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PRK10073 putative glycosyl transferase; Provisional

Probab=87.19  E-value=8.4  Score=35.13  Aligned_cols=105  Identities=9%  Similarity=0.067  Sum_probs=64.2

Q ss_pred             ccccCCc-chHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327           25 LVEFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT  101 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~  101 (358)
                      .+|.-|. ..|..+|+++.+....  +++||-+...+...+.++++..... .+.+..+ +..|.+.+.-.+.+..  .+
T Consensus        11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~-~i~vi~~-~n~G~~~arN~gl~~a--~g   86 (328)
T PRK10073         11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYP-HVRLLHQ-ANAGVSVARNTGLAVA--TG   86 (328)
T ss_pred             EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEC-CCCChHHHHHHHHHhC--CC
Confidence            3566454 4899999999887543  4444444344455555555433321 2333333 3457777777777766  44


Q ss_pred             CCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327          102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI  134 (358)
Q Consensus       102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~  134 (358)
                      + .++++.+|.....+ +..+++...+.+.+..+
T Consensus        87 ~-yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         87 K-YVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             C-EEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            3 88999999976655 78888876655555443

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=87.03  E-value=9.9  Score=31.32  Aligned_cols=92  Identities=17%  Similarity=0.136  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHCCCC--EEEEEeccChH-HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEE
Q 018327           32 PMILHQIEALKAVGVT--EVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL  108 (358)
Q Consensus        32 pli~~~l~~l~~~gi~--~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~  108 (358)
                      ..+..+|+++.+....  +++|+-+...+ .+...++.+.... ..+.+.......|.+.+.-.+.+..  .. +.++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~a~n~g~~~a--~~-d~i~~l   90 (202)
T cd04184          15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQD-PRIKVVFREENGGISAATNSALELA--TG-EFVALL   90 (202)
T ss_pred             HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcC-CCEEEEEcccCCCHHHHHHHHHHhh--cC-CEEEEE
Confidence            6788889998876533  55555443323 3444444432221 1233333444557777777777766  33 388888


Q ss_pred             eCCeeeccC-HHHHHHHHHh
Q 018327          109 NSDVISEYP-FAEMIEFHKA  127 (358)
Q Consensus       109 ~gD~i~~~~-l~~~~~~~~~  127 (358)
                      ..|.....+ +..+++.+..
T Consensus        91 d~D~~~~~~~l~~~~~~~~~  110 (202)
T cd04184          91 DHDDELAPHALYEVVKALNE  110 (202)
T ss_pred             CCCCcCChHHHHHHHHHHHh
Confidence            999977766 7888887743

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]

Probab=86.67  E-value=5.2  Score=31.66  Aligned_cols=95  Identities=13%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCC-CEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPG-CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~-~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      +..++.+.+.......-.|..  .+. +.+..++ +.|++..+|...+.-+...| ++.+..+....+.+.|...+++.+
T Consensus        26 i~~g~~f~G~l~f~~~l~IdG--~~~-G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~G  101 (146)
T COG1664          26 IGAGTTFKGELVFEGPLRIDG--TFE-GDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIG  101 (146)
T ss_pred             EecCCEEEEEEEecceEEEeE--EEE-EEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEee
Confidence            344444444444444333322  232 3333333 77777777765555555555 556666666666777777776666


Q ss_pred             ccEECCCcEECCceEEcCcEE
Q 018327          321 MTILGEDVHVCDEIYSNGGVV  341 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~~~~v  341 (358)
                       -+=++...+..++.+.|...
T Consensus       102 -dI~~~~i~v~~Ga~f~G~~~  121 (146)
T COG1664         102 -DITTKEITVEEGAIFEGDCE  121 (146)
T ss_pred             -eecccEEEEccCCEEEeEEE
Confidence             55555666666677665444

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=85.93  E-value=9  Score=32.62  Aligned_cols=97  Identities=14%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             cccCCc-chHHHHHHHHHHCCCC---EEEEEeccChHHHHHHHHhhhh---ccCcEEEEeccCCcCC-CchHHHHHHhhc
Q 018327           26 VEFANK-PMILHQIEALKAVGVT---EVVLAINYQPEVMLNFLKEFEA---KLGIKIICSQETEPLG-TAGPLALARDKL   97 (358)
Q Consensus        26 lpi~g~-pli~~~l~~l~~~gi~---~i~vv~~~~~~~i~~~l~~~~~---~~~~~i~~~~~~~~~g-~~~sl~~~~~~i   97 (358)
                      +|.-|. ..|..+|+.+.+....   -.++|+....+...+.++++.+   ..+.++.+.......| .+.++..+.+..
T Consensus         7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a   86 (232)
T cd06437           7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA   86 (232)
T ss_pred             EecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC
Confidence            455444 4889999999876432   1233444444443333333221   1234555444443345 456677777666


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFH  125 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~  125 (358)
                        ..+ .++++.+|.+...+ +..+...+
T Consensus        87 --~~~-~i~~~DaD~~~~~~~l~~~~~~~  112 (232)
T cd06437          87 --KGE-YVAIFDADFVPPPDFLQKTPPYF  112 (232)
T ss_pred             --CCC-EEEEEcCCCCCChHHHHHhhhhh
Confidence              443 89999999988766 67755443

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=85.90  E-value=2  Score=31.55  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEc-cCCEECCccEEcC
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG-WHSTVGQWARVEN  320 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~ig~~~~i~~  320 (358)
                      +.+++.+.++.....+..+...  +.++........|++++.|...+-.+.+.|. +. +.+.+.. +...|...+.+..
T Consensus         5 I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G   80 (101)
T PF04519_consen    5 IGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG   80 (101)
T ss_pred             ECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE
Confidence            4566677776666666555433  3334444446677777777644555566663 33 5554444 5566777777776


Q ss_pred             ccEECCCcEECCceEEcCc
Q 018327          321 MTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~~~  339 (358)
                       -+-.+...|..++.+.|.
T Consensus        81 -~i~~~~l~v~~ga~i~G~   98 (101)
T PF04519_consen   81 -DITAGKLEVEGGASINGN   98 (101)
T ss_pred             -EEEECEEEEeCCCEEEEE
Confidence             444555777777776653

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=85.58  E-value=8  Score=35.96  Aligned_cols=99  Identities=9%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             ccccCC-cchHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCC---chHHHHHHhhc
Q 018327           25 LVEFAN-KPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGT---AGPLALARDKL   97 (358)
Q Consensus        25 llpi~g-~pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~---~~sl~~~~~~i   97 (358)
                      ++|..| .+.|..+|+++.+..-  -+|+++.+...+...+.++++.+.+ +.++.++...++.|.   ..++.++.+..
T Consensus        46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a  125 (373)
T TIGR03472        46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA  125 (373)
T ss_pred             EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence            566654 4589999999988763  3555554444344445555443322 234444433333343   34454444444


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHK  126 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~  126 (358)
                        .. |.++++.+|.....+ ++.++..+.
T Consensus       126 --~g-e~i~~~DaD~~~~p~~L~~lv~~~~  152 (373)
T TIGR03472       126 --RH-DILVIADSDISVGPDYLRQVVAPLA  152 (373)
T ss_pred             --cC-CEEEEECCCCCcChhHHHHHHHHhc
Confidence              33 388999999987776 788877764

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=84.69  E-value=9.4  Score=34.78  Aligned_cols=102  Identities=12%  Similarity=0.156  Sum_probs=59.8

Q ss_pred             cccCCcc-hHHHHHHHH----HHCCCC-EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327           26 VEFANKP-MILHQIEAL----KAVGVT-EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID   99 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l----~~~gi~-~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~   99 (358)
                      +|.-|.. -|..+++.+    .....+ ++++|-+...+...+.++++.+..+.++.........|.+.++..+.+..  
T Consensus        12 IP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A--   89 (325)
T PRK10714         12 IPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHV--   89 (325)
T ss_pred             EcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhC--
Confidence            4554432 455555544    333333 55555444455566666654443344444333444568888888888776  


Q ss_pred             CCCCcEEEEeCCeeecc-CHHHHHHHHHhcCCe
Q 018327          100 DTGEPFFVLNSDVISEY-PFAEMIEFHKAHGGE  131 (358)
Q Consensus       100 ~~~~~~lv~~gD~i~~~-~l~~~~~~~~~~~~~  131 (358)
                      ..+ .++++.+|.-.+. .+.++++...+ +.+
T Consensus        90 ~gd-~vv~~DaD~q~~p~~i~~l~~~~~~-~~D  120 (325)
T PRK10714         90 TGD-LIITLDADLQNPPEEIPRLVAKADE-GYD  120 (325)
T ss_pred             CCC-EEEEECCCCCCCHHHHHHHHHHHHh-hCC
Confidence            443 8889999996654 48888887653 344

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=83.55  E-value=1.9  Score=36.61  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             ccccCCc-chHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCc---CCCchHHHHHHhhc
Q 018327           25 LVEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEP---LGTAGPLALARDKL   97 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~---~g~~~sl~~~~~~i   97 (358)
                      ++|..|. +.+..+|+.+.+..  --+++|+.+...++..+.++.+.+.++ ..+.++.....   .+...++..+.+..
T Consensus         6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~   85 (228)
T PF13641_consen    6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA   85 (228)
T ss_dssp             E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred             EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence            4566555 58899999988653  345566565444444444444333222 22333333322   23566777777776


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFH  125 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~  125 (358)
                        .. +.++++..|.+.+.+ +..+++.+
T Consensus        86 --~~-d~i~~lD~D~~~~p~~l~~~~~~~  111 (228)
T PF13641_consen   86 --RG-DYILFLDDDTVLDPDWLERLLAAF  111 (228)
T ss_dssp             -----SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred             --CC-CEEEEECCCcEECHHHHHHHHHHH
Confidence              33 388999999988766 88888888

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=83.48  E-value=1.2  Score=41.81  Aligned_cols=61  Identities=28%  Similarity=0.410  Sum_probs=44.2

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC----------CC-CEEEEEecc-ChHHHHHHHHh
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV----------GV-TEVVLAINY-QPEVMLNFLKE   66 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~----------gi-~~i~vv~~~-~~~~i~~~l~~   66 (358)
                      ++++|+|.|+|++-   ..||.+.|++   |+.+++...+.+...          +. =..+|.++. -.+...+|++.
T Consensus       100 ~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~  175 (477)
T KOG2388|consen  100 VVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES  175 (477)
T ss_pred             EEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence            68899999999987   7999999997   666888776654332          21 133566665 45778888874

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=83.17  E-value=13  Score=34.74  Aligned_cols=107  Identities=12%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             ccccCC-cchHHHHHHHHHHCCC---CEEEEEeccChHHHHHHHHhhhhccC--cEEEEeccC-Cc---CCCchHHHHHH
Q 018327           25 LVEFAN-KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAKLG--IKIICSQET-EP---LGTAGPLALAR   94 (358)
Q Consensus        25 llpi~g-~pli~~~l~~l~~~gi---~~i~vv~~~~~~~i~~~l~~~~~~~~--~~i~~~~~~-~~---~g~~~sl~~~~   94 (358)
                      .+|.-| .+.|..+|+.+.+...   -+|+||-+...+...+.++++.+...  ..+..+... .+   .|...++.++.
T Consensus        45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~  124 (384)
T TIGR03469        45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI  124 (384)
T ss_pred             EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence            455544 5589999999987653   25666665555555555555433221  123323221 12   35555677776


Q ss_pred             hhccCCC--CCcEEEEeCCeeeccC-HHHHHHHHHhcCCe
Q 018327           95 DKLIDDT--GEPFFVLNSDVISEYP-FAEMIEFHKAHGGE  131 (358)
Q Consensus        95 ~~i~~~~--~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~  131 (358)
                      +......  .|.++++.+|...+.+ +.++++...+.+.+
T Consensus       125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~  164 (384)
T TIGR03469       125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLD  164 (384)
T ss_pred             HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCC
Confidence            6653111  2388999999987766 78888887765443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=82.31  E-value=2.7  Score=43.76  Aligned_cols=56  Identities=5%  Similarity=0.031  Sum_probs=38.1

Q ss_pred             cEEeeeEECCCcEECCCcE-EeccEEccCCEECCccEEcCccE-ECCCcEECCceEEcC
Q 018327          282 VRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTI-LGEDVHVCDEIYSNG  338 (358)
Q Consensus       282 ~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~-i~~~~~i~~~~~i~~  338 (358)
                      +.+.||++..++.++++.. |++|.|+.+..||++++|.+ +. ..-+..|.+++++-.
T Consensus       332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~vP~~~ci~~  389 (974)
T PRK13412        332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG-VPENSWNLDLPEGVCIDV  389 (974)
T ss_pred             eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec-ccccccceecCCCcEEEE
Confidence            3455777788888877744 77778888888887777777 44 333466777766543

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=81.84  E-value=15  Score=32.42  Aligned_cols=91  Identities=16%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHCCCCEEEEEeccC-h-HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe
Q 018327           32 PMILHQIEALKAVGVTEVVLAINYQ-P-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (358)
Q Consensus        32 pli~~~l~~l~~~gi~~i~vv~~~~-~-~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~  109 (358)
                      ..|..+++.+... ..+|+||=+.. . +.+.+.+.+   .  ..+.++...+..|-+.+.-.+.+.......+.++++.
T Consensus         8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~---~--~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD   81 (281)
T TIGR01556         8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR---G--QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD   81 (281)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc---C--CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence            4778888888775 44555544432 2 233333332   1  2344455555668888888877665322334899999


Q ss_pred             CCeeeccC-HHHHHHHHHhc
Q 018327          110 SDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus       110 gD~i~~~~-l~~~~~~~~~~  128 (358)
                      .|.....+ +..+++...+.
T Consensus        82 ~D~~~~~~~l~~l~~~~~~~  101 (281)
T TIGR01556        82 QDSRPGNAFLAAQWKLLSAE  101 (281)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99977665 77888776554

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]

Probab=80.93  E-value=7.8  Score=30.68  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             CCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCC-cEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCce
Q 018327          256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI  334 (358)
Q Consensus       256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~-~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~  334 (358)
                      +++.|+.++.+.++........|..  .+...+..+. +.|+...+|.+.+..+...|.. ...++ ....+.+.|..+.
T Consensus        22 ~~tli~~g~~f~G~l~f~~~l~IdG--~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~G-~v~Gn-i~~a~~Vei~~~g   97 (146)
T COG1664          22 PETLIGAGTTFKGELVFEGPLRIDG--TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVEG-KVEGN-ILAAERVELYPGG   97 (146)
T ss_pred             CCeEEecCCEEEEEEEecceEEEeE--EEEEEEEeCCCEEECCccEEEEEEEeCEEEEee-EEEEE-EEEeeEEEEcCCc
Confidence            4555666666654444445555655  5554444444 7777777777755555544422 22222 4444555555555


Q ss_pred             EEcCc
Q 018327          335 YSNGG  339 (358)
Q Consensus       335 ~i~~~  339 (358)
                      .+.|.
T Consensus        98 ~v~Gd  102 (146)
T COG1664          98 RVIGD  102 (146)
T ss_pred             EEeee
Confidence            55443

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=80.88  E-value=16  Score=34.44  Aligned_cols=199  Identities=14%  Similarity=0.187  Sum_probs=108.5

Q ss_pred             ccccCC-cc-hHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhcc--CcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           25 LVEFAN-KP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKL--GIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        25 llpi~g-~p-li~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~--~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      +.|.-| .+ .++.+++++.+....  +++++.+...++..+.+++.....  .+.+.+. .....|.+.++..++... 
T Consensus        59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~-  136 (439)
T COG1215          59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRA-  136 (439)
T ss_pred             EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhc-
Confidence            445534 45 899999999998743  777777766788888888765554  2333311 134457778888888776 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEE-EcCCCCcEEEEee-------cCC---CCCC
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVV-MEESTGKVEKFVE-------KPK---LFVG  166 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~v~~~~e-------k~~---~~~~  166 (358)
                       .. |-++++.+|.+...| +.+++..+......  .++..+....... ..- -+++..+..       .+.   ....
T Consensus       137 -~~-d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~--~v~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~g~~  211 (439)
T COG1215         137 -KG-DVVVILDADTVPEPDALRELVSPFEDPPVG--AVVGTPRIRNRPDPSNL-LGRIQAIEYLSAFYFRLRAASKGGLI  211 (439)
T ss_pred             -CC-CEEEEEcCCCCCChhHHHHHHhhhcCCCee--EEeCCceeeecCChhhh-cchhcchhhhhhHHHhhhhhhhcCCe
Confidence             34 388899999988877 78888887654433  1221111100000 000 011111111       111   0112


Q ss_pred             CeEEEEEEEEChhhhhhcc-CCCCCcccch-HHHHH-hcCceEEEe-ecCeEEe-cCCHHHHHHHHHHH
Q 018327          167 NKINAGIYLLNPAVLDRIE-LRPTSIEKEV-FPKIA-LEGKLFAMV-LPGFWMD-IGQPRDYITGLRLY  230 (358)
Q Consensus       167 ~~~~~Giy~~~~~~l~~l~-~~~~~~~~d~-l~~l~-~~~~v~~~~-~~~~~~d-i~t~~dy~~a~~~~  230 (358)
                      ...+...+.+++++++... .......+|. +...+ ..|--..+. -.-.|.+ ..|..++.+....+
T Consensus       212 ~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW  280 (439)
T COG1215         212 SFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRW  280 (439)
T ss_pred             EEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHH
Confidence            3456778899999999875 3344444443 33322 333322222 2213333 35666665554433

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=80.23  E-value=17  Score=30.84  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=52.5

Q ss_pred             CCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327           29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV  107 (358)
Q Consensus        29 ~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv  107 (358)
                      .+. ..|..+|+.+.+. ..+++||=+...+...... +. ..  ..+.++......|-+.+...+.+.....+.+.+++
T Consensus         7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~-~~-~~--~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~   81 (237)
T cd02526           7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRL-RL-NS--EKIELIHLGENLGIAKALNIGIKAALENGADYVLL   81 (237)
T ss_pred             cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHh-hc-cC--CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEE
Confidence            455 6889999998877 5555555433323222222 21 12  23333444445677777777776653212348999


Q ss_pred             EeCCeeeccC-HHHHH
Q 018327          108 LNSDVISEYP-FAEMI  122 (358)
Q Consensus       108 ~~gD~i~~~~-l~~~~  122 (358)
                      +..|...+.+ +..++
T Consensus        82 lD~D~~~~~~~l~~l~   97 (237)
T cd02526          82 FDQDSVPPPDMVEKLL   97 (237)
T ss_pred             ECCCCCcCHhHHHHHH
Confidence            9999987665 67774

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1tzf_A	259	X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph		5e-24
2ggo_A	401	Crystal Structure Of Glucose-1-Phosphate Thymidylyl		1e-21
1jyl_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		3e-13
1jyk_A	254	Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt		4e-13
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		4e-13
4arw_A	302	Pseudomonas Aeruginosa Rmla In Complex With Alloste		7e-11
1mp3_A	292	L89t Variant Of S. Enterica Rmla Length = 292		7e-11
3hl3_A	269	2.76 Angstrom Crystal Structure Of A Putative Gluco		8e-11
4b2x_A	303	Pseudomonas Aeruginosa Rmla In Complex With Alloste		8e-11
1fxo_A	293	The Structural Basis Of The Catalytic Mechanism And		1e-10
1mc3_A	296	Crystal Structure Of Rffh Length = 296		2e-10
3pkq_A	292	Q83d Variant Of S. Enterica Rmla With Dgtp Length =		3e-10
1g23_A	293	The Structural Basis Of The Catalytic Mechanism And		3e-10
3pkp_A	292	Q83s Variant Of S. Enterica Rmla With Datp Length =		5e-10
1iim_A	292	Thymidylyltransferase Complexed With Ttp Length = 2		6e-10
1h5s_A	293	Thymidylyltransferase Complexed With Tmp Length = 2		7e-10
1h5t_A	293	Thymidylyltransferase Complexed With Thymidylyldiph		1e-09
1mp5_A	292	Y177f Variant Of S. Enterica Rmla Length = 292		1e-09
1h5s_D	293	Thymidylyltransferase Complexed With Tmp Length = 2		2e-09
1h5r_B	293	Thymidylyltransferase Complexed With Thimidine And		2e-09
2qkx_A	391	N-Acetyl Glucosamine 1-Phosphate Uridyltransferase		3e-09
3spt_A	501	Crystal Structure Of Glmu From Mycobacterium Tuberc		5e-09
3d8v_A	495	Crystal Structure Of Glmu From Mycobacterium Tuberc		5e-09
3foq_A	503	Crystal Structure Of N-Acetylglucosamine-1-Phosphat		5e-09
1mp4_A	292	W224h Variant Of S. Enterica Rmla Length = 292		9e-09
3fww_A	456	The Crystal Structure Of The Bifunctional N-Acetylg		2e-07
4fce_A	459	Crystal Structure Of Yersinia Pestis Glmu In Comlex		5e-07
2ux8_A	297	Crystal Structure Of Sphingomonas Elodea Atcc 31461		3e-06
2e3d_A	302	Crystal Structure Of E. Coli Glucose-1-Phosphate Ur		5e-06
2v0h_A	456	Characterization Of Substrate Binding And Catalysis		2e-05
3juj_A	281	The Crystal Structure Of Apo- Udp-Glucose Pyrophosp		3e-04
3brk_X	420	Crystal Structure Of Adp-Glucose Pyrophosphorylase		6e-04

>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 28/248 (11%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+ 
Sbjct: 4   KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 62  NFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDT 101
            +   +   +        E          EP             T G L    + + DD 
Sbjct: 64  EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD- 122
Query: 102 GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVD-EPSKYGVVVMEESTGKVEKFVEK 160
            E F     D +++      I+FHKAHG +A++     P ++G + ++   G+V  F EK
Sbjct: 123 -EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ--AGQVRSFQEK 179
Query: 161 PKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP 220
           PK   G  IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  +   
Sbjct: 180 PKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTL 238
Query: 221 RD--YITG 226
           RD  Y+ G
Sbjct: 239 RDKVYLEG 246

>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 43/357 (12%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA IL  G G RL P+T + PK  V   +KP+I +QIE L+  G+ ++ + ++ + +  
Sbjct: 1   MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPF 118
               + FE KL    I +Q+ +  GT   +  A+  D+ +   G+ FF    ++ +    
Sbjct: 59  ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITL 114
Query: 119 AEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
            E             + V  P  YGV+V+ ++   + K +EKP++   N INAGIY LN 
Sbjct: 115 KE--------NAIIGVKVSNPKDYGVLVL-DNQNNLSKIIEKPEIPPSNLINAGIYKLNS 165
Query: 179 AV---LDRIELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI-TGXXXXX 231
            +   LD+I +     E E+   I L   + ++  +   G+WMDIG+P + I        
Sbjct: 166 DIFTYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD 224
Query: 232 XXXXXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGCV-- 277
                           I G V++ E A+            IG+G  IGP+  + P  +  
Sbjct: 225 NLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV 284
Query: 278 ----VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
               + + V +    +M G +I   + +  S+I      G    + N+    ++V V
Sbjct: 285 EKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341

>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
            ++LKE   K G++++ + +         L L +++L +      +V+++D    Y F  
Sbjct: 85  FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEELANS-----YVIDAD---NYLFKN 133
Query: 121 MI 122
           M 
Sbjct: 134 MF 135

>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL 97
            ++LKE   K G++++ + +         L L +++L
Sbjct: 85  FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEEL 118

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    +   +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ G++     + EP G A    + +D + D   +   VL  +V   + F+E
Sbjct: 64  YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++    +    A I    V +P  +GVV   +S G+V    EKP     N +  G+Y  +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEF-DSEGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 178 PAVL---------DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 218
             V+         DR EL  TS+ +E      L  +L    +   W+D G
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228

>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 13  KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 73  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 130
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 131 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 189
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 190 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 236

>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P GTA    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 218
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228

>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EV 59
           MK +IL GG G+RL P+T    K L+     PMI H +  LK   +T++++    +    
Sbjct: 25  MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YP 117
           +++FL   + + G+      + +  G A  L L  D + +D      +L  ++ S+   P
Sbjct: 85  VVSFLGSGQ-EFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRP 141
Query: 118 FAEMIEFHKAHGGEASIM--VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 175
           + E  EF     G   ++  VD+P ++GV  ++    K+ +  EKPK    +    GIYL
Sbjct: 142 YVE--EFTNQKEGAKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIYL 197
Query: 176 LNPAVLDRI-ELRPTSIEK----EVFPKIALEGKLFAMVLPGFWMDIG 218
            +  V   I EL+P++  +    ++       G L    + G+W D G
Sbjct: 198 YDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245

>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 14  KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 74  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 131
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 132 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 190
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 191 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 237

>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q     
Sbjct: 4   KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 64  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 227

>pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T  V K L+   +KP I + +  L   G+ E+++    + +   
Sbjct: 5   KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFAE 120
             L    ++ GI++  +++  P G A    +    L    GEP   VL  ++     F+ 
Sbjct: 65  QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSP 121
Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
            +    A    A++    V +P ++GVV  +++   +    EKPK    N    G+Y  +
Sbjct: 122 KLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYD 180
Query: 178 PAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIG 218
             V+         +R EL  TSI +         + L G+ FA      W+D G
Sbjct: 181 SKVVEYAKQVKPSERGELEITSINQXYLEAGNLTVELLGRGFA------WLDTG 228

>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 25/233 (10%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P TL++ K L+   +KP I + +  L   G+ E+++    Q     
Sbjct: 4   KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    +  G+ +  + +  P G A    +    + +D      VL  ++   + F E+
Sbjct: 64  QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  + 
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
            V+D         R EL  T + +    +    + + G+ +A      W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIXGRGYA------WLDTG 227

>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +       P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  ++  G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL-N 177
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y   N
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 178 PAVLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
             VL    L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 182 DVVLMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 218
            V+   + L+P++   +E     +I LE G+L  AM+  G+ W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTG 228

>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G++  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLFFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
           +V++  + L+P++   +E     +I +E G+L  AM+  G+ W+D G  +  I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234

>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL-IDDTGEPFFVLNSDVISEYPFAE 120
             L    ++ G+ +    +  P G A    +  + +  DD      VL  ++   +   +
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA---LVLGDNIFYGHDLPK 121
Query: 121 MIE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  +
Sbjct: 122 LMEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYD 180
Query: 178 PAVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
             V+   + L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 181 NDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V K L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
            V+   + L+P++   +E     +I LE    ++ L G    W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228

>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 12  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 68
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 69  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 128
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
           I  H+A     +++   +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 129 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 188
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
            + A L      L   + ++E++
Sbjct: 189 FDIAALRSALSRLSSNNAQQELY 211

>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 16  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 72
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 73  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
           I  H+A     +++   +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 192
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
            + A L      L   + ++E++
Sbjct: 193 FDIAALRSALSRLSSNNAQQELY 215

>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 10  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 67  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
           I  H+A     +++   +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 186
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
            + A L      L   + ++E++
Sbjct: 187 FDIAALRSALSRLSSNNAQQELY 209

>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           L+L  G GTR+R  T   PK L   A + M+ H + A+  +    +++ + +  + +   
Sbjct: 18  LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 74
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
           + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A++
Sbjct: 75  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 134
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
           I  H+A     +++   +D+P  YG ++     E    VE+    P      ++NAG+Y 
Sbjct: 135 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 194
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
            + A L      L   + ++E++
Sbjct: 195 FDIAALRSALSRLSSNNAQQELY 217

>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           K +IL GG GTRL P+T++V + L+   +KPMI + +  L   G+ ++++    Q     
Sbjct: 5   KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62  NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
             L    ++ G+ +    +  P G A    +  + +  D  +   VL  ++   +   ++
Sbjct: 65  QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
           +E   +K  G    +  V++P +YGVV  +++ G      EKP     N    G+Y  + 
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS 190
           +V++  + L+P++
Sbjct: 182 SVVEMAKNLKPSA 194

>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional N-Acetylglucosamine-1- Phosphate UridyltransferaseGLUCOSAMINE-1-Phosphate Acetyltransferase From Yersinia Pestis Co92 Length = 456

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 135/358 (37%), Gaps = 47/358 (13%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E  
Sbjct: 6   MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE-- 60
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              LK+  A   +  +   + E LGT   +  A     DD  E   +L  DV  IS    
Sbjct: 61  --LLKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 114
Query: 119 AEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGI 173
             ++      G G  ++ +D PS YG +V E   G V   VE           N+IN GI
Sbjct: 115 QRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGI 172
Query: 174 YLLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITG 226
            + N   L R    ++      E  +   IAL   +GK  A V P    ++    + +  
Sbjct: 173 LVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQL 232
Query: 227 XXXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAV 272
                             G  ++             G  +  ++  I EG +I G  V +
Sbjct: 233 SALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRI 292
Query: 273 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           G GCV      L  C +     I  +  +  + +  + TVG +AR+     L E  HV
Sbjct: 293 GTGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 344

>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With Alpha-D- Glucosamine 1-Phosphate (Gp1) Length = 459

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 134/355 (37%), Gaps = 47/355 (13%)
Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E     
Sbjct: 12  VILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE----L 64
Query: 64  LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 121
           LK+  A   +  +   + E LGT   +  A     DD  E   +L  DV  IS      +
Sbjct: 65  LKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRL 120
Query: 122 IEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIYLL 176
           +      G G  ++ +D PS YG +V E   G V   VE           N+IN GI + 
Sbjct: 121 LAAKPEGGIGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGILVA 178
Query: 177 NPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGXXX 229
           N   L R    ++      E  +   IAL   +GK  A V P    ++    + +     
Sbjct: 179 NGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSAL 238
Query: 230 XXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAVGPG 275
                          G  ++             G  +  ++  I EG +I G  V +G G
Sbjct: 239 ERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTG 298
Query: 276 CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           CV      L  C +     I  +  +  + +  + TVG +AR+     L E  HV
Sbjct: 299 CV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 347

>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461 Glucose- 1-phosphate Uridylyltransferase In Complex With Glucose- 1-phosphate. Length = 297

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM- 60
           KA+  V G GTR  P T ++PK ++   ++P+I + ++     G+ +++         + 
Sbjct: 16  KAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 61  --LNFLKEFEAKLGIK----------------IICSQETEPLGTAGPLALARDKLIDDTG 102
              +   E EA +  +                I   ++ EP+G    +  ARD + D   
Sbjct: 76  DHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD--- 132
Query: 103 EPFFV-LNSDVISEYP--FAEMIEFHKAHGGE----ASIMVDEPSKYGVVVMEESTG--- 152
           EPF V L  D +   P    +M++ +   GG       +  D+  +YG++      G   
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGVLT 192
Query: 153 KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIE 185
           +V+  VEKP       N    G Y+L P V+  +E
Sbjct: 193 EVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILE 227

>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate Uridylyltransferase Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 105/257 (40%), Gaps = 58/257 (22%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
           KA+I V G GTR+ P T ++PK ++   +KP+I + +    A G+TE+VL  +     + 
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 62  NFLK---EFEAKLGIKI----------ICSQETEPLGTAGPLA-------LARDKLIDDT 101
           N      E EA L  ++          IC      +     LA       L    ++ D 
Sbjct: 70  NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVD---EPSKYGVVVME-- 148
            EP  V+  DVI        S+   AEMI       G + IMV+   + + YGVV  +  
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFD-ETGHSQIMVEPVADVTAYGVVDCKGV 186
Query: 149 -----ESTGKVEKFVEKPKLFVG--NKINAGIYLLN-----------PAVLDRIELRPT- 189
                ES   V   VEKPK  V   N    G Y+L+           P   D I+L    
Sbjct: 187 ELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAI 245
Query: 190 --SIEKEVFPKIALEGK 204
              IEKE      ++GK
Sbjct: 246 DMLIEKETVEAYHMKGK 262

>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The Potential Antibacterial Target N-Acetylglucosamine-1- Phosphate Uridyltransferase (Glmu) Length = 456

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 144/356 (40%), Gaps = 43/356 (12%)
Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR+      +PK L   A KPM+ H I+    +G   + L   +  ++M
Sbjct: 6   LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPF 118
              L   +    +      +TE LGTA  +  A     D+  E   VL  D  +I++   
Sbjct: 63  RTHLANEQVNWVL------QTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 AEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGN----KINAGI 173
            ++IE    +G    ++ +D P+ YG ++ E   G V   VE+           ++N G+
Sbjct: 115 EKLIEAKPENGIALLTVNLDNPTGYGRIIRE--NGNVVAIVEQKDANAEQLNIKEVNTGV 172
Query: 174 YLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXX 229
            + + A     L R+       E  +   IAL  +    V+     D+ +    + G   
Sbjct: 173 MVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVME----VEGANN 228
Query: 230 XXXXXXXXXXXXXATGAN-IVGNVLVHESAQIG-EGCL-IGPDVAVGPGCVVESGVRL-S 285
                           +  ++  V++++ A+    G L  G DV +    ++E  V+L  
Sbjct: 229 RLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGD 288
Query: 286 RCTVMRG-----------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
           R  +  G           V IK ++ +  SI+G  + +G ++R+     L  + HV
Sbjct: 289 RVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHV 344

>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 40/261 (15%)
Query: 2   KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT-------------E 48
           K L    G+GTR  P+T ++PK ++   +KP+I + +E     G               E
Sbjct: 4   KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 49  VVLAINYQPEVMLNFLKEFEAKLGIKIICSQ------ETEPLGTAGPLALARDKLIDDTG 102
                +Y+ E  +    +  A   I+ I  +        + +   G   L  + LI +  
Sbjct: 64  DYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN-- 121
Query: 103 EPFFVLNSD---VISEYP--FAEMIEFHKAHGGE----ASIMVDEPSKYGVVV---MEES 150
           EPF V+ +D   +  ++P    +M   ++ +         + ++E SKYGV+    +EE 
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEG 181
Query: 151 TGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRI-ELRPTSIEK----EVFPKIALEG 203
             +++  VEKP       N    G Y+L P + + + E +P    +    +     A   
Sbjct: 182 VYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRK 241
Query: 204 KLFAMVLPGFWMDIGQPRDYI 224
           ++ A    G   D G    YI
Sbjct: 242 RIIAYQFKGKRYDCGSVEGYI 262

>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 139/367 (37%), Gaps = 50/367 (13%)
Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILH-QIEALKAVGVTEVVLAINYQPEVML 61
           A +L GG G+RL+ LT    KP V F  K  I+   +      G+  + +A  Y+   ++
Sbjct: 15  AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLI 74
Query: 62  NFLK---EF---EAKLGIKII-CSQ---ETEPL-GTAGPLALARDKLIDDTGEPFFVLNS 110
             L+   +F   E      I+  SQ   ET+   GTA  +    D +     E   +L  
Sbjct: 75  RHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILAG 134
Query: 111 DVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKPKL-- 163
           D I +  +   ++ H   G + +I        E + +GV  + E   ++  F+EKP    
Sbjct: 135 DHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKD-EIIDFIEKPADPP 193
Query: 164 -FVGNK----INAGIYLLNPAVLD----RIELRPTSIE---KEVFPKIALEGKLFAMVLP 211
              GN+     + GIY+ +   L     R    PTS     K++ P I   GK  A    
Sbjct: 194 GIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFA 253
Query: 212 G-----------FWMDIGQPRDYITGXXXXXXXXXXXXXXXXA----TGANIVGNVLVHE 256
                       +W D+G    Y                   +    T A I        
Sbjct: 254 DSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVH 313
Query: 257 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316
             +   G  +     V   C++ SG  L+R  +  GVR   ++ + ++++     +G+ A
Sbjct: 314 DDEDRRGSAVSS--VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHA 370
Query: 317 RVENMTI 323
           ++ N+ I
Sbjct: 371 QLSNVVI 377

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	5e-69
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	4e-68
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	2e-63
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	2e-52
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	1e-42
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	1e-23
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	3e-20
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	1e-18
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	7e-08
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	2e-16
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	3e-04
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	4e-16
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	6e-08
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-14
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	3e-09
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	2e-13
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	5e-13
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	8e-04
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	3e-12
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	7e-12
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	9e-11
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	2e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	8e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	6e-04
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	4e-09
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	4e-09
3pnn_A	303	Conserved domain protein; structural genomics, PSI	9e-09
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-08
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-07
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-08
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	2e-07
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	4e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-07
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	6e-08
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	1e-07
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	2e-07
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	1e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	5e-05
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	4e-06
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	4e-06
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	6e-06
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-05
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	2e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	1e-04
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	4e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	1e-04
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	6e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	6e-05
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	6e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	1e-04
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	7e-05
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	8e-05
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-04
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	2e-04
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	2e-04
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	3e-04
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	3e-04
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	4e-04
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	4e-04

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score =  216 bits (551), Expect = 5e-69
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 27/243 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 26  VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                  + K G++++ + +         L L +++L +     + +   + +    F  
Sbjct: 86  ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYL----FKN 133

Query: 121 MIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 180
           M           S+  ++ +    +V  +   KV+  +   K     +I +G+   +   
Sbjct: 134 MFRNDLTRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVSFWDAPT 189

Query: 181 LDRI----------ELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGLRL 229
            ++I                    +      E  ++   L G    +I   +DY     +
Sbjct: 190 AEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEI 249

Query: 230 YLD 232
             +
Sbjct: 250 LKN 252

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score =  212 bits (543), Expect = 4e-68
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 24/228 (10%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA+IL  G GTRL  +    PKPLV      +IL  ++ L    V+E ++  +   + +
Sbjct: 19  MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSP-HVSEFIIVASRYADDI 73

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
             FLK+       KI+     E  G    L +A++ +     + F +   D +      +
Sbjct: 74  DAFLKDK--GFNYKIVRHDRPE-KGNGYSLLVAKNHV----EDRFILTMGDHVYS---QQ 123

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
            IE      G  +       +  +   + +E+  G+V K  +  +    + ++ G ++L+
Sbjct: 124 FIEKAVRGEGVIADREPRFVDIGEATKIRVED--GRVAKIGKDLRE--FDCVDTGFFVLD 179

Query: 178 PAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI 224
            ++ +  E +    E+    +I    +L    +    WMD+    D  
Sbjct: 180 DSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVR 226

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score =  206 bits (526), Expect = 2e-63
 Identities = 88/339 (25%), Positives = 156/339 (46%), Gaps = 25/339 (7%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MKA IL  G G RL P+T + PK  V   +KP+I +QIE L+  G+ ++ + ++ + +  
Sbjct: 1   MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
               + FE KL    I +Q+ +  GT   +  A+        +   ++  D+   +E   
Sbjct: 59  ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFN------DEALIIYGDLFFSNEKEI 108

Query: 119 AEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
             +I   +       + V  P  YGV+V++     + K +EKP++   N INAGIY LN 
Sbjct: 109 CNIITLKEN--AIIGVKVSNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGIYKLNS 165

Query: 179 AVLDRIELRPTSIEKEV----FPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDS 233
            +   ++    S   E+       +  +  ++  +   G+WMDIG+P + I   +  LD+
Sbjct: 166 DIFTYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDN 225

Query: 234 LRKKSSL-KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV-MR 291
           L    +L  +     I G V++ E A+I  G  I   V +G G  +     L   T+ + 
Sbjct: 226 LVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVE 285

Query: 292 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
             +I     +  S+I   S +   + V + +++ EDV+ 
Sbjct: 286 KNKIGASVEVKESVIMEGSKIPHLSYVGD-SVIAEDVNF 323

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score =  173 bits (441), Expect = 2e-52
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 28/250 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+
Sbjct: 3   SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 61  LNFLKEFEA--------------------KLGIKIICSQETEPLGTAGPLALARDKLIDD 100
             +   +                           +      +   T G L    + +   
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV--K 120

Query: 101 TGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEPSKYGVVVMEESTGKVEKFVE 159
             E F     D +++      I+FHKAHG +A++     P ++G + ++   G+V  F E
Sbjct: 121 DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQA--GQVRSFQE 178

Query: 160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFW--MDI 217
           KPK   G  IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  MD 
Sbjct: 179 KPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237

Query: 218 GQPRDYITGL 227
            + + Y+ GL
Sbjct: 238 LRDKVYLEGL 247

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score =  146 bits (369), Expect = 1e-42
 Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 23/187 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M ALI+ GG GTR+  +     KPL++   + +I + +  L    V  + +A +      
Sbjct: 1   MDALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP--F 118
             ++    A    K I   +T   G    L            EPF V++SD+I+      
Sbjct: 57  KEYIN--SAYKDYKNIVVIDTSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKII 110

Query: 119 AEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
             ++++      +       P    + VM       ++    P +     + A I +++P
Sbjct: 111 NSIVDYFYCIKAKT------PDVEALAVMIP-----KEKYPNPSIDFNGLVPADINVVSP 159

Query: 179 AVLDRIE 185
               + E
Sbjct: 160 KHGYQKE 166

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score =  100 bits (251), Expect = 1e-23
 Identities = 79/364 (21%), Positives = 140/364 (38%), Gaps = 59/364 (16%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           + A+IL  G GTR+      +PK L   A KPM+ H I+    +G   + L   +  ++M
Sbjct: 6   LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L   +          Q  E LGTA  +  A     D+  E   VL  D   I++   
Sbjct: 63  RTHLANEQVN-----WVLQT-EQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114

Query: 119 AEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 171
            ++IE    +G   +++   +D P+ YG ++ E   G V   VE      +     ++N 
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIREN--GNVVAIVEQKDANAEQLNIKEVNT 170

Query: 172 GIYLLNPAVLDRI--ELRPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDY- 223
           G+ + + A   +    +   + + E     +      +      V         Q  D  
Sbjct: 171 GVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAV---------QATDVM 221

Query: 224 -ITGL--RLYLDSL------RKKSSLKLATGANIV--GNVLVHESAQIGEGCLIGP---- 268
            + G   RL L +L      ++ S L L  G  I       +  + + G+   I      
Sbjct: 222 EVEGANNRLQLAALERYFQNKQASKL-LLEGVMIYDPARFDLRGTLEHGKDVEIDVNVII 280

Query: 269 --DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 326
             +V +G    + +G  L    +   V IK ++ +  SI+G  + +G ++R+     L  
Sbjct: 281 EGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAA 340

Query: 327 DVHV 330
           + HV
Sbjct: 341 ETHV 344

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 87.8 bits (216), Expect = 3e-20
 Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 22/239 (9%)

Query: 4   LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
           +I + G  +R      + PK ++E   + +  H + +  A   +   L I         F
Sbjct: 3   VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62

Query: 64  LKEFEAKLGIKII--CSQETEPLGTAGPLALARDKLID---DTGEPFFVLNSDVISEYPF 118
           ++E   +LGIK        TE  G A  + L  ++L     D      V N D       
Sbjct: 63  VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFV 122

Query: 119 AEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
              I  H     E      +   +         G  +      K  + +  + G+Y  N 
Sbjct: 123 FPDISQHSDGYLEVFQGGGDNWSFAKPEH---AGSTKVIQTAEKNPISDLCSTGLYHFNR 179

Query: 179 AVLDRIELR---------PTSIEKEVFPKIAL---EGK--LFAMVLPGFWMDIGQPRDY 223
                   R             E  + P       +G    + ++     +  G P +Y
Sbjct: 180 KEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEY 238

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
              L+L  G GTR+R      PK L   A + M+ H + A+  +    +++ + +  + +
Sbjct: 13  TAVLVLAAGPGTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              + E    LG  I  + +  PLGT   +      L DD      V + D   +     
Sbjct: 70  APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 129

Query: 119 AEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 171
           A++I  H+A     +++   +D+P  YG ++  +   +V   VE     P      ++NA
Sbjct: 130 ADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVNA 188

Query: 172 GIYLLNPAVL 181
           G+Y  + A L
Sbjct: 189 GVYAFDIAAL 198

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 263 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 322
           G  +     +G  CVV     L+   V  G  +      SSS IG  + VG +  +   T
Sbjct: 295 GTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVV-RTHGSSSSIGDGAAVGPFTYLRPGT 353

Query: 323 ILGEDVHV 330
            LG D  +
Sbjct: 354 ALGADGKL 361

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 55/274 (20%), Positives = 96/274 (35%), Gaps = 55/274 (20%)

Query: 118 FAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 171
           +  M++ H   G + +I        E + +GV+ + E   ++  F+EKP    G   N  
Sbjct: 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNE-KDEIIDFIEKPADPPGIPGNEG 200

Query: 172 ------GIYLLNPAVL----DRIELRPTSIE---KEVFPKIALEGKLFA----------- 207
                 GIY+ +   L     R    PTS     K++ P I   GK  A           
Sbjct: 201 FALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSD 260

Query: 208 MVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE- 256
                +W D+G    Y          +  L +Y  S    +  ++   A  V +      
Sbjct: 261 FEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRG 320

Query: 257 ---SAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 309
              S+ +   C+I G  +    +  G    S  RL    V+  V+I +HA +S+ +I   
Sbjct: 321 SAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG 380

Query: 310 STVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 342
             +      E + +  +          +  G+ L
Sbjct: 381 VVIP-----EGLIVGEDPELDAKRFRRTESGICL 409

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANK 31
          A +L GG G+RL+ LT    KP V F  K
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGK 43

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++     +PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 14  AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELV-- 68

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
                E  L  +     ++E LGT   + +    L   +G    V+  D   I+      
Sbjct: 69  -----EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKN 122

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGI 173
           +I+FH  H   A+I+    D P  YG +V  ++  +V + VE            +IN G 
Sbjct: 123 LIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGT 181

Query: 174 YLLNPAVL 181
           Y+ +   L
Sbjct: 182 YVFDNERL 189

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 263 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 322
             ++     +G   V+ +G  +   T+  G  I  ++ I  S +    TVG +A +   +
Sbjct: 286 NVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNS 344

Query: 323 ILGEDVHV 330
            LG  VH+
Sbjct: 345 SLGAQVHI 352

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 55/190 (28%), Positives = 75/190 (39%), Gaps = 24/190 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A KPM+ H I+A   +G   V L   +  E++
Sbjct: 9   MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL 65

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
              L +            Q  E LGT   +  A     DD  E   +L  DV  IS    
Sbjct: 66  KKTLADPSLN-----WVLQA-EQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 117

Query: 119 AEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINA 171
             ++      G    ++   +D PS YG +V E   G V   VE           N+IN 
Sbjct: 118 QRLLAAKPEGG--IGLLTVKLDNPSGYGRIVREN--GDVVGIVEHKDASDAQREINEINT 173

Query: 172 GIYLLNPAVL 181
           GI + N   L
Sbjct: 174 GILVANGRDL 183

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 251 NVLVHESAQIGEGCLIGP------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 304
              +      G    I         V +G    + +G  L  C +     I  +  +  +
Sbjct: 262 RFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA 321

Query: 305 IIGWHSTVGQWARVENMTILGEDVHV 330
            +  + TVG +AR+     L E  HV
Sbjct: 322 RLDANCTVGPFARLRPGAELAEGAHV 347

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 64/230 (27%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           KA+  V G GTR  P T ++PK   P+V   ++P+I + ++     G+ +++        
Sbjct: 16  KAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEAGIEQMIFVTGRGKS 72

Query: 52  AI------NYQPEVML------NFLKEFEAKLGIKIICSQETEPLGTAGPLAL------A 93
           A+       Y+ E  +        + +        I   ++ EP+G      L      A
Sbjct: 73  ALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMG------LGHAVWCA 126

Query: 94  RDKLIDDTGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVV 145
           R  ++ D  EPF VL  D     +     +M++ +   GG   I       D+  +YG++
Sbjct: 127 R-DIVGD--EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGII 182

Query: 146 VMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 185
                 G   +V+  VEKP        L V      G Y+L P V+  +E
Sbjct: 183 TPGTQDGVLTEVKGLVEKPAPGTAPSNLSV-----IGRYILQPEVMRILE 227

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 49/313 (15%), Positives = 111/313 (35%), Gaps = 85/313 (27%)

Query: 118 FAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 171
           + + I+ H+    + ++          + +G++ ++E  G++ +F EKP+      +   
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVD 210

Query: 172 --------------------GIYLLNPAVL-DRIELRPTSIE---KEVFPKIALEG-KLF 206
                               GIY+++  V+ + +  +         EV P     G ++ 
Sbjct: 211 TTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQ 270

Query: 207 AMVLPGFWMDIGQPRDY-----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVH 255
           A +  G+W DIG    +           +     Y  S    +  +    + ++   +  
Sbjct: 271 AYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330

Query: 256 ESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRG------------------- 292
             + IGEGC+I    +    VG    +  G  +    +M                     
Sbjct: 331 --SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP 388

Query: 293 VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE-------IYSNGGVVLPHK 345
           + I K+  I  +II  ++ +G     +N+ I+ +D +V +           +G V +   
Sbjct: 389 IGIGKNCHIKRAIIDKNARIG-----DNVKIINKD-NVQEAARETDGYFIKSGIVTVI-- 440

Query: 346 EIKSSILKPEIVM 358
             K +++   I++
Sbjct: 441 --KDALIPSGIII 451

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANK 31
           +IL GG GTRL PLT    KP V     
Sbjct: 23 GIILGGGAGTRLYPLTKKRAKPAVPLGAN 51

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 74/239 (30%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           KA+I V G GTR+ P T ++PK   PLV   +KP+I + +    A G+TE+VL       
Sbjct: 10  KAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAAGITEIVLVTHSSKN 66

Query: 52  AI------NYQPEVML------NFLKEFEAKL--GIKIICSQETEPLGTAGPLAL----- 92
           +I      +++ E ML        L E ++     + I+  ++    G      L     
Sbjct: 67  SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKG------LGHAVL 120

Query: 93  -ARDKLIDDTGEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIM----VDEP 139
            A   ++ D  EP  V+  DVI        S+   AEMI      G   S +    V + 
Sbjct: 121 CAH-PVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH--SQIMVEPVADV 175

Query: 140 SKYGVV------VMEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 185
           + YGVV      +    +  +   VEKPK       L +      G Y+L+  +   + 
Sbjct: 176 TAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAI-----VGRYVLSADIWPLLA 229

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281

 Score = 64.4 bits (158), Expect = 7e-12
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 67/233 (28%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
           K L    G+GTR  P+T ++PK   P+V   +KP+I + +E     G   + +       
Sbjct: 4   KCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEAGCEVMAIVTGRNKR 60

Query: 52  AI------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLAL------ 92
           ++      +Y+ E  +      N LK     +        ++ +  G      L      
Sbjct: 61  SLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKG------LGHAILT 114

Query: 93  ARDKLIDDTGEPFFVLNSDVI----SEYP-FAEMIEFHKAHGGEASIMV-----DEPSKY 142
               LI +  EPF V+ +D +           +M   ++ +   + + +     +E SKY
Sbjct: 115 GE-ALIGN--EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKY 170

Query: 143 GVVVMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 185
           GV+  E       +++  VEKP        L V      G Y+L P + + + 
Sbjct: 171 GVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAV-----IGRYILTPDIFEILS 218

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 48/226 (21%), Positives = 81/226 (35%), Gaps = 52/226 (23%)

Query: 2   KALILVGGFGTRLRPLTLSVPK---PLVEFANKPMILHQIEALKAVGVTEVVL------- 51
             ++   G GTR  P T +VPK   P+V   + P I         +G T + +       
Sbjct: 14  TVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAELGATRLAIITAPNKA 70

Query: 52  AI------NYQPEVML------NFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI 98
            +      + + E  L      + ++        IK +   + +PLG    + LA   ++
Sbjct: 71  GVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAES-VL 129

Query: 99  DDTGEPFFV-LNSDVISEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVV-----V 146
           DD  +   V L  D++        M +     GG + +        + SKYG+       
Sbjct: 130 DDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADT 188

Query: 147 MEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 185
            +    KV+  VEKP        L        G YLL+  + D + 
Sbjct: 189 KDSDVKKVKGMVEKPAIEDAPSRLAA-----TGRYLLDRKIFDALR 229

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G   RL       PK L+ + +  ++   ++  +  G  +++L +         
Sbjct: 8   GVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASA--- 59

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            ++   A  G  ++  ++ E  G A  L +A  ++         ++  D   ++      
Sbjct: 60  -VRAAMALDGTDVVVVEDVE-RGCAASLRVALARV-HPRATGIVLMLGDQPQVAPATLRR 116

Query: 121 MIEFHKAHG 129
           +I+   A  
Sbjct: 117 IIDVGPATE 125

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL---------------S 285
            +  G  I  NV + ++  I  GC+I  +V +  G  + +   L                
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 286 RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 342
              +     I+    I   +IIG +   G    +   T +G +V +         V +
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYI 127

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 300
            +    NI  NV V E + I +   + P        VV +         + GV I+  A 
Sbjct: 126 YIGNYVNIHSNVFVGEKSIIKDFVWLFP-------HVVLTNDPTPPSNELLGVTIELFAV 178

Query: 301 I-SSSIIGWHSTVGQWARVENMTILGEDV 328
           I + S++     + + A V    ++ +DV
Sbjct: 179 IAARSVVLPGIHINEDALVGAGAVVTKDV 207

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 62/240 (25%), Positives = 91/240 (37%), Gaps = 41/240 (17%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG G+RL P+T    K L+     PMI H +  LK   +T+ ++ I    E M
Sbjct: 25  MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITD-IMIIT-GKEHM 82

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV------ 112
            + +       + G+      + +  G A  L L  D          FV N  +      
Sbjct: 83  GDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCED----------FVGNDRMVVILGD 132

Query: 113 -ISEYPFAEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK 168
            I        +E        A ++   VD+P ++GV        K+ +  EKPK    + 
Sbjct: 133 NIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVA--NIQNRKIIEIEEKPKEPKSSY 190

Query: 169 INAGIYLLNPAVLD---------RIELRPTSIEKEVFPKIALE-GKLFAMVLPGFWMDIG 218
              GIYL +  V           R EL  T I         L+ G L    + G+W D G
Sbjct: 191 AVTGIYLYDSKVFSYIKELKPSARGELEITDINNWY-----LKRGVLTYNEMSGWWTDAG 245

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           M+  A++L GG         +   K LV +  +PM+   +EAL A G++ V +  N    
Sbjct: 1   MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59

Query: 59  VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPF 118
                              +         G L     + ++       V   D+    P 
Sbjct: 60  ------------------PAPALTLPDRGGLLENLE-QALEHVEGRVLVATGDI----PH 96

Query: 119 --AEMIEFHKAHGGEASIMV 136
              E + F      EA+++ 
Sbjct: 97  LTEEAVRFVLDKAPEAALVY 116

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 45/303 (14%), Positives = 80/303 (26%), Gaps = 77/303 (25%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           MK    +L  G G+R    +L     +       ++ + +      G   +V  I     
Sbjct: 4   MKPTLFVLAAGMGSRYG--SLKQLDGIGP-GGDTIMDYSVYDAIRAGFGRLVFVIR--HS 58

Query: 59  VMLNFLKEFEAKLGIKI-----------------ICSQETEPLGTAGPLALARDKLIDDT 101
               F ++   K   +I                       +P GT   + + RD      
Sbjct: 59  FEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDA----I 114

Query: 102 GEPFFVLNSD----VISEYPFAEMIEFHKAHGGEASIMV---------DEPSKYGVVVME 148
            EPF V+N+D           A  +   +   GE  ++                GV  ++
Sbjct: 115 REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVD 174

Query: 149 ESTGKVEKFVEKPK-------------------LFVGNKINAGIYLLNPAVLDRIELRPT 189
           E    +   VE+                     L     ++  ++   P   D  E    
Sbjct: 175 E-KHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFI 233

Query: 190 SIEKEVFPKIALE-------------GKLFAMVLP--GFWMDIGQPRDYITGLRLYLDSL 234
           +       +   E             G+    VL     W  +    D   G+   L  L
Sbjct: 234 NFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDD-RPGVVAKLREL 292

Query: 235 RKK 237
            + 
Sbjct: 293 TEA 295

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 296
           ++ KL    +I  N ++    ++G+  +IG    VG    + +G RL +  T+   ++I 
Sbjct: 108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIG 167

Query: 297 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 337
           ++  I S +++G     + +  G W ++  +   I+G+ V    EI + 
Sbjct: 168 QNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRV----EIGAC 212

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 312
           +  SA I     +G +V++G   V+ESGV L     +  G  + K++      IG  S +
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNS-----KIGAGSRL 154

Query: 313 GQWARVENMTILGEDVHV 330
                + +   +G++  +
Sbjct: 155 WANVTIYHEIQIGQNCLI 172

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 296
           +  ++   A++    ++   A+IG G  IG    +G   V+  G  L  R T+   V I 
Sbjct: 130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIG 189

Query: 297 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 337
               I S ++IG     + +  G W ++  +    +G+DV    EI +N
Sbjct: 190 ARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV----EIGAN 234

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 312
           +H +A +     + P  +VG   V+ESG R+ +  ++     I   +     +IG    +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARS-----VIGEGGWL 176

Query: 313 GQWARVENMTILGEDVHV 330
                + +   +G  V +
Sbjct: 177 APRVTLYHDVTIGARVSI 194

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 13/129 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
            ++L  G+  RL       PK L+   +  ++   +   +     ++++ +    +    
Sbjct: 8   GVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADE--- 59

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAE 120
            + E     G+ I+   +   LG +  L  A   + D T E   ++  D   I+    A 
Sbjct: 60  -VLEKVELDGLDIVLVDDAG-LGCSSSLKSALTWV-DPTAEGIVLMLGDQPGITASAVAS 116

Query: 121 MIEFHKAHG 129
           +I   +   
Sbjct: 117 LIAGGRGAT 125

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 296
            +  +     I    +V + A +G  C IG    +G    V     +  R  +   V I 
Sbjct: 135 PTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194

Query: 297 KHACI-SSSIIG------WHSTVGQWARVENM--TILGEDVHVCDEIYSN 337
           K   I   ++IG        S  GQ   ++++   I+ +DV    EI +N
Sbjct: 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDV----EIGAN 240

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 312
           +H +A I    +I   V + P  VV     + S C +  G  I  ++      +G HS +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYS-----TVGEHSYI 181

Query: 313 GQWARVENMTILGEDVHV 330
                +     +G+ V +
Sbjct: 182 HPRVVIRERVSIGKRVII 199

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 24/174 (13%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E +L I+  P+  
Sbjct: 3   RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIIS-TPQDT 60

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             F +     +  G+ +  + +  P G      LA+  LI   GE F        VL  +
Sbjct: 61  PRFQQLLGDGSNWGLDLQYAVQPSPDG------LAQAFLI---GESFIGNDLSALVLGDN 111

Query: 112 VISEYPFAEMIEFHKAHGGEASI---MVDEPSKYGVVVMEESTGKVEKFVEKPK 162
           +   + F E++         AS+    V +P +YGVV  ++  GK     EKP 
Sbjct: 112 LYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPL 164

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 24/174 (13%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E +L I   PE  
Sbjct: 4   MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIRE-ILIIT-TPEDK 61

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             F +     ++ GI++  +++  P G      LA+  +I   GE F        VL  +
Sbjct: 62  GYFQRLLGDGSEFGIQLEYAEQPSPDG------LAQAFII---GETFLNGEPSCLVLGDN 112

Query: 112 VISEYPFAEMIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPK 162
           +     F+  +    A    A++    V +P ++GVV  +++  +     EKPK
Sbjct: 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAISLEEKPK 165

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 24/174 (13%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ + +L I+  P  +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRD-ILIIS-TPRDL 61

Query: 61  LNFLKEFE--AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-------FVLNSD 111
             +       ++ G++     + EP G      +A   ++   G+ F        VL  +
Sbjct: 62  PLYRDLLGDGSQFGVRFSYRVQEEPRG------IADAFIV---GKDFIGDSKVALVLGDN 112

Query: 112 VISEYPFAEMIEFHKAHGGEASI---MVDEPSKYGVVVMEESTGKVEKFVEKPK 162
           V   + F+E++    +    A I    V +P  +GVV  +   G+V    EKP 
Sbjct: 113 VFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVISIEEKPS 165

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          MK  +LVGG G R+      + K  V    K +I   +E       T  V     Q E  
Sbjct: 1  MKVAVLVGGVGRRI-----GMEKTEVMLCGKKLIEWVLEKYSPF-QTVFVCRDEKQAE-- 52

Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLA 91
               +  ++   + I     +     G +A
Sbjct: 53 -----KLSSRYEAEFI----WDLHKGVGSIA 74

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-------S 302
              +H +A + EG  IG    +     +  G  +   C++ + V +     I       +
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62

Query: 303 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 351
           +  +  +  +          +     +    I              +++
Sbjct: 63  NVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL 111

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 299
           ++   + I   V +   A+IGEGC +G +V VG    + + V++ +  +V   V ++   
Sbjct: 17  RIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDV 76

Query: 300 CISSSIIGW----------------HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 342
               S++                   + V Q A +     +     +    +   G V+
Sbjct: 77  FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +  ++L GG   R+      V K L+E   KP+  H  +AL    ++ VV+  N      
Sbjct: 7   ITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQ--- 58

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112
                E     G+K+I   E       GPLA     +  + GE F     D 
Sbjct: 59  -----EIYQASGLKVI---EDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT 102

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS- 302
              I     V+  A++  G        +     V     +   C +   V +  HA +  
Sbjct: 201 NVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRG 260

Query: 303 -SSIIGWHSTVGQWARVENMTILGEDVHVCD 332
              ++     +   A ++   ++   V +  
Sbjct: 261 GPILLDDRVLIEGHACIQGEILIERQVEISG 291

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 21/133 (15%)

Query: 1   MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
           M    +IL  G G R         K L +  N P+I+  I     +    +V    Y  E
Sbjct: 1   MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGK--YVNE 53

Query: 59  VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEY 116
           ++          +   +I +      G +  L L      D       V   D+  +++ 
Sbjct: 54  ML-------PLLMDQIVIYNPFWN-EGISTSLKLGLRFFKDYDA--VLVALGDMPFVTKE 103

Query: 117 PFAEMIEFHKAHG 129
              ++I   K + 
Sbjct: 104 DVNKIINTFKPNC 116

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SI 305
           +    VL+H SA +    +IG  V+VGP C + S V+L       G ++   + +   + 
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLG-----NGCKLYPSSHVFGNTE 57

Query: 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYS 336
           +G    +   A V +       +   + I  
Sbjct: 58  LGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 306
           +VH +A IG+G      C IG  V +G GC +     +   T +    +     +    +
Sbjct: 15  VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDEL 74

Query: 307 GWHSTVGQWARVENMTILGED 327
             ++ +G    + +  ++G  
Sbjct: 75  PGYTFIGCNNIIGHHAVVGVK 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 54/431 (12%), Positives = 113/431 (26%), Gaps = 162/431 (37%)

Query: 55  YQPEVMLNFLKEFEAKLGIK--------IICSQETEPLGTAGPLALARDKLID---DTGE 103
           Y+ +++  F   F      K        I+  +E + +  +        +L        E
Sbjct: 18  YK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 104 P----FF--VLNSDVISEYPF-AEMIEFH-KAHGGEASIMVDEPSKYGVVVMEESTGKVE 155
                F   VL  +    Y F    I+   +       + +++  +     +        
Sbjct: 77  EMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFA 127

Query: 156 K-FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-----K--LFA 207
           K  V + + +   K+   +           ELRP          + ++G     K  +  
Sbjct: 128 KYNVSRLQPY--LKLRQALL----------ELRPA-------KNVLIDGVLGSGKTWVAL 168

Query: 208 MVL---------PG--FWMDIGQ---PRDYITGL-RLYLD-----SLRKKSSLKLATGAN 247
            V              FW+++     P   +  L +L        + R   S  +    +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 248 IVGNVLVH--ESAQIGEGCLIGPDV-------AVGPGC-------------VVESGVR-- 283
            +   L    +S       L+  +V       A    C              + +     
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 284 ------------------LSRCTVMRGVRIKKHACISS----SIIG-----WHSTVGQWA 316
                             L +    R   + +    ++    SII        +T   W 
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 317 RV-------------------------ENMTILGEDVHV---------CDEIYSNGGVVL 342
            V                         + +++     H+          D I S+  VV+
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 343 PHKEIKSSILK 353
            +K  K S+++
Sbjct: 409 -NKLHKYSLVE 418

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 1  MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP 57
          M   A++   G G RLR      PK  V     P++ H +  L+A G +  +V+A+   P
Sbjct: 1  MATVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV---P 54

Query: 58 EVMLNFLKEFEAKLGIKIIC 77
            + +  K         I+ 
Sbjct: 55 PALTDESKLVFGGEDSVIVS 74

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 303
           ++   A++ E        +I  +V++  G ++E  V++   + + +  R  + A I  
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGV 65

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHS 310
           + +H +A I     +   V VGP  ++E  V +       G  I+ H  I + S IG  +
Sbjct: 1   MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQ-----EGTIIEGHVKICAGSEIGKFN 55

Query: 311 TVGQWA 316
              Q A
Sbjct: 56  RFHQGA 61

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
           ++L GG G R++    S+PK  +    +P+ L+       +  V E+V+          
Sbjct: 7  VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFR 60

Query: 62 NFLKEFEAKLGIKII 76
          +  +E+E  + + + 
Sbjct: 61 DIFEEYEESIDVDLS 75

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
           + ++A I     I   V +G  CV+  GV+L       GV++  +  +       H+ VG
Sbjct: 4   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLD-----EGVKLHNNVTLQG-----HTFVG 53

Query: 314 QWARVENMTILGED 327
           +   +    +LG  
Sbjct: 54  KNTEIFPFAVLGTQ 67

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 301
           ++   A+I +G      C+IG  V +  G  + + V L   T + +   I   A +
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 303
           ++ E AQ+G+         +  D  +G   V++ G R+   T +    R+  +A +  
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGD 69

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
           +H SA I EG  +G DV +     V    ++        V IK+ A I S      +T+G
Sbjct: 7   IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIG-----NNVVIKQGARILS-----DTTIG 56

Query: 314 QWARVENMTILGED 327
             +RV +  I+G+ 
Sbjct: 57  DHSRVFSYAIVGDI 70

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 312
           +H +A I  G  +   V VGP  +V S V +          I  H+ I   + IG  + +
Sbjct: 25  IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIG-----ARTTIGSHSVIEGHTTIGEDNRI 79

Query: 313 GQWA 316
           G +A
Sbjct: 80  GHYA 83

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 253 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 303
           ++   AQ+ E        ++G +V +G    + S   +   T +    RI  +A +  
Sbjct: 30  IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGG 87

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Length = 201

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 25/138 (18%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
             +L GG   R         K L E   K +I    E  K+V   EV +    +      
Sbjct: 17  CYVLAGGKSKRF-----GEDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDR------ 64

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPF--AE 120
              E  + L   ++     +    +  +      L     E  FVL+ D+    P    E
Sbjct: 65  ---EKFSFLNAPVV----LDEFEESASIIGLYTALKHAKEENVFVLSGDL----PLMKKE 113

Query: 121 MIEFHKAHGGEASIMVDE 138
            + +   +  E   +   
Sbjct: 114 TVLYVLENFKEPVSVAKT 131

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SII 306
           I  +  VH +A + EG  IG +  +GP C+V   V +       G  +K H  ++  + I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIG-----EGTVLKSHVVVNGHTKI 56

Query: 307 GWHSTVGQWA 316
           G  + + Q+A
Sbjct: 57  GRDNEIYQFA 66

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 296
            S++L  G  ++  V ++  + IG+  +I     V   C + +   L     +  GV + 
Sbjct: 110 PSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVG 169

Query: 297 KHACI-SSSIIGWHSTVGQWARV 318
           + A +   + +    T+G    V
Sbjct: 170 ERAFLGVGARVIPGVTIGADTIV 192

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 179 AVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKS 238
           A++D    R   +   V         L    L   ++ IG  R     LR  L    +  
Sbjct: 40  AIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNR-----LRQKLGRKARDH 94

Query: 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 297
              L     I  + +V  S ++GEG  +   VA+     +     + +   V    R+  
Sbjct: 95  GFSLVN--AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGA 152

Query: 298 HACISSS-------IIGWHSTVGQWARVENMTILGEDVHV 330
              +  +        +G  + +G  ARV     +G D  V
Sbjct: 153 ACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIV 192

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
          A IL GG GTR+    +S+PK  +    KP+I+H +E         +++++         
Sbjct: 6  AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHA 63

Query: 61 LNFLKEFEAKLGIKIIC 77
           + +K++ +   I +I 
Sbjct: 64 EDNIKKYISDDRIVVIE 80

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 236 KKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVR 294
             + ++   G  I+  V+++  A+I +G ++     +   CV+     +S        V+
Sbjct: 86  PSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVK 145

Query: 295 IKKHACI-SSSIIGWHSTVGQWARV 318
           I K+  +  +S +  + ++   + +
Sbjct: 146 IGKNCFLGINSCVLPNLSLADDSIL 170

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
          A++L  G G R+     +VPK  +E   + +  + +        +  VV+      E   
Sbjct: 16 AILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTR--REWFE 70

Query: 62 NFLKEFEAKLGIKIIC 77
             K    +  + I+ 
Sbjct: 71 VVEKRVFHEKVLGIVE 86

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          A++   GFG R++      PK  +   N+ ++ H + AL A   V  VV+AI+
Sbjct: 10 AVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS 59

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN 54
          ALI   G G R        PK  VE  +K ++ H +   +    V   V+ ++
Sbjct: 9  ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-------- 292
           ++   A I+ N  ++  A IGEG +I  +  +G    V     +    V+ G        
Sbjct: 105 EIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAK 164

Query: 293 -VRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDV 328
            V ++    I ++ ++    TVG+ A V    ++ EDV
Sbjct: 165 PVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDV 202

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAIN 54
          A++   G G RL      VPK   +   + +I   ++ L   G V  VV+A+ 
Sbjct: 10 AIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVP 59

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
          A IL GG GTR+      +PK  +E  ++P+++H IE       + ++V+ ++       
Sbjct: 5  AGILAGGTGTRMGISN--LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62

Query: 61 LNFLKEFEAKLGIKII 76
           + + ++      +II
Sbjct: 63 EDLVDKYLPLYKERII 78

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Length = 337

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 37/186 (19%)

Query: 1   MK--ALILVGGFGTRLRPL-TLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAI--- 53
           MK  AL++ GG G RL PL     PKP +     K ++   +E L  +   E  L     
Sbjct: 1   MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60

Query: 54  NYQPEVMLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFFVLNSD 111
           + +               GI+++     EPLG  TAG + L   + + +  E   VL +D
Sbjct: 61  DQEAVAR-------PYADGIRLLL----EPLGRDTAGAVLLGVAEALKEGAERLLVLPAD 109

Query: 112 -VISEYP-FAEMIE--FHKAHGGEASIMVD---EPSK----YGVVVMEESTG---KVEKF 157
             + +   + E +      A  G    +V     P++    YG + +    G   + E F
Sbjct: 110 HYVGDDEAYREALATMLEAAEEGF---VVALGLRPTRPETEYGYIRLGPREGAWYRGEGF 166

Query: 158 VEKPKL 163
           VEKP  
Sbjct: 167 VEKPSY 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	100.0
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	100.0
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	100.0
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	100.0
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	100.0
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	100.0
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	100.0
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	100.0
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	100.0
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	100.0
3pnn_A	303	Conserved domain protein; structural genomics, PSI	100.0
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.98
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.96
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.95
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.95
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.94
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.94
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.93
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.92
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.92
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.91
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.9
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.89
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.89
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.84
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.84
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.83
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.83
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.83
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.82
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.81
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.81
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.8
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.79
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.79
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.78
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.77
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.76
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.76
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.76
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.73
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.73
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.73
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.7
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.69
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.69
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.68
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.67
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.66
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.66
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.66
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.66
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.65
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.65
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.65
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.64
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.64
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.64
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.64
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.63
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.63
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.63
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.63
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.62
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.62
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.62
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.61
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.61
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.6
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.6
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.6
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.6
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.59
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.59
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.59
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.59
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.58
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.57
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.57
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.57
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.57
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.56
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.56
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.55
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.55
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.55
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.55
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.55
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.54
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.54
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.54
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.53
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.53
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.53
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.53
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.52
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.5
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.49
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.49
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.49
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.48
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.48
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.47
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.46
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.46
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.46
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.46
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.46
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.45
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.45
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.44
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.44
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.44
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.43
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.42
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.42
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.42
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	99.41
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.41
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.41
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.4
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.4
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.39
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.39
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.37
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.36
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.35
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.35
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	99.34
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.34
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.34
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	99.33
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.32
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.32
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.29
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.29
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.27
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.27
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.25
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.22
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.21
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.2
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.19
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.13
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.12
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.12
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.11
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.11
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.11
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.08
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.04
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.02
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.99
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.95
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.94
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.92
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.87
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.79
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	98.37
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	97.91
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	97.57
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	96.86
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	96.84
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	94.45
3bcv_A	240	Putative glycosyltransferase protein; protein stru	93.16
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	92.67
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	88.2
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	88.15
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	82.49

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.5e-50  Score=380.28  Aligned_cols=337  Identities=21%  Similarity=0.320  Sum_probs=273.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hhh-----ccCc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEA-----KLGI   73 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~~-----~~~~   73 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+|+.+ |.-     ..++
T Consensus        13 ~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v   92 (420)
T 3brk_X           13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF   92 (420)
T ss_dssp             EEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEE
T ss_pred             eEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccccccccCCE
Confidence            5799999999999999999999999999999 99999999999999999999999988889999876 310     0113


Q ss_pred             EEEEeccC--Cc---CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCee
Q 018327           74 KIICSQET--EP---LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYG  143 (358)
Q Consensus        74 ~i~~~~~~--~~---~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~  143 (358)
                      .+....+.  .+   .|++++++++++.+.....++|++++||.+++.++.++++.|.+++.++++++     +++..||
T Consensus        93 ~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g  172 (420)
T 3brk_X           93 DILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG  172 (420)
T ss_dssp             EEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSE
T ss_pred             EEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCccc
Confidence            33222221  23   79999999999888432224899999999998899999999998888887776     3456899


Q ss_pred             eEEEcCCCCcEEEEeecCCCCC-------CCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcCceEEEe
Q 018327          144 VVVMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMV  209 (358)
Q Consensus       144 ~~~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~v~~~~  209 (358)
                      ++..|++ +++..|.|||....       +.+.++|+|+|++++|. .+..      ...++..|+++.++++++++++.
T Consensus       173 ~v~~d~~-g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~  251 (420)
T 3brk_X          173 VMHVNEK-DEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHR  251 (420)
T ss_dssp             EEEECTT-SBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEE
T ss_pred             EEEECCC-CcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEE
Confidence            9998876 89999999986443       56899999999999874 4432      12345678999999888999999


Q ss_pred             e-----------cCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECC-----CcEECCCcEEC
Q 018327          210 L-----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGE-----GCLIGPDVAVG  273 (358)
Q Consensus       210 ~-----------~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig  273 (358)
                      +           +++|.|++|++||.++++.++.....  .....+...+.+.+.++|++.+++     ++.+ +++.||
T Consensus       252 ~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig  328 (420)
T 3brk_X          252 FADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPD--LDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVS  328 (420)
T ss_dssp             HHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCS--SCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEEC
T ss_pred             eccccccccccCCCEEEECCCHHHHHHHHHHHhCCCch--hhcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEEC
Confidence            8           88999999999999999988764322  111234445666677777777776     7888 599999


Q ss_pred             CCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEcc
Q 018327          274 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  343 (358)
Q Consensus       274 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~  343 (358)
                      ++|.| .++.|.+|+||++|+|+++|.|.+|+||++|.||+++.|.+ ++||+++.||+++.+.+....|
T Consensus       329 ~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~~  396 (420)
T 3brk_X          329 GDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELD  396 (420)
T ss_dssp             SSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHHH
T ss_pred             CCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCCC
Confidence            99999 89999999999999999999999999999999999999998 9999999999999998776665

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=2.8e-49  Score=375.25  Aligned_cols=319  Identities=20%  Similarity=0.335  Sum_probs=225.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hhhcc-------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEAKL-------   71 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~~~~-------   71 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+|+.+ |...+       
T Consensus        21 ~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~  100 (451)
T 1yp2_A           21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG  100 (451)
T ss_dssp             EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred             eEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccccccC
Confidence            6899999999999999999999999999999 99999999999999999999999988888888875 21011       


Q ss_pred             CcEEEEeccC-----CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCC
Q 018327           72 GIKIICSQET-----EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSK  141 (358)
Q Consensus        72 ~~~i~~~~~~-----~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~  141 (358)
                      .+.+....+.     .+.|++++++.+++.+....+++|++++||.+++.++.++++.|.+++.++++++     +++..
T Consensus       101 ~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~  180 (451)
T 1yp2_A          101 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA  180 (451)
T ss_dssp             EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred             cEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhccc
Confidence            1233332221     1479999999999888532235899999999998899999999998888888776     25678


Q ss_pred             eeeEEEcCCCCcEEEEeecCCCC---------------------CCCeEEEEEEEEChhhhh-hccCC---CCCcccchH
Q 018327          142 YGVVVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLD-RIELR---PTSIEKEVF  196 (358)
Q Consensus       142 ~~~~~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~-~l~~~---~~~~~~d~l  196 (358)
                      ||++..|++ ++|..|.|||...                     .+.+.++|+|+|++++|. .+.+.   ..++..+++
T Consensus       181 ~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l  259 (451)
T 1yp2_A          181 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI  259 (451)
T ss_dssp             SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred             CCEEEECCC-CCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHH
Confidence            999999876 8999999998631                     256889999999999874 44432   335667889


Q ss_pred             HHHHhc-CceEEEeecCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEE----------CCCcE
Q 018327          197 PKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI----------GEGCL  265 (358)
Q Consensus       197 ~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i----------~~~~~  265 (358)
                      +.++++ .+++++..+++|.|++|+++|.++++.++.+.... ...+.+.+.+.+++.|++++.|          |++|+
T Consensus       260 ~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~-~~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~  338 (451)
T 1yp2_A          260 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPD-FSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV  338 (451)
T ss_dssp             HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCS-SCSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCE
T ss_pred             HHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccc-hhccCCCCeeccCCccCCCeEEcceEEeCeEECCCCE
Confidence            988887 57999999999999999999999998887644211 1112233333333333333333          22222


Q ss_pred             ECC----CcEECCCCEECCCcEEeeeEECCC-------------------cEECCCcEEeccEEccCCEECCccEEcCc
Q 018327          266 IGP----DVAVGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHSTVGQWARVENM  321 (358)
Q Consensus       266 i~~----~~~ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  321 (358)
                      |+.    +++||++|.||++|.|.++++..+                   +.||++|.|.+++||++|+||+++.|.++
T Consensus       339 I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          339 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             EEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCS
T ss_pred             EcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCC
Confidence            221    566666666666666665444444                   66666666666666666666666666654

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=1.2e-47  Score=359.01  Aligned_cols=338  Identities=23%  Similarity=0.392  Sum_probs=263.1

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+++.|.++++++++|++++.   +++++.+...  ++.+  +.+
T Consensus         1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~--~i~~--~~~   73 (401)
T 2ggo_A            1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK--EISI--VTQ   73 (401)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT--TCEE--EEC
T ss_pred             CeEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC--cEEE--EeC
Confidence            89999999999999999999999999999999999999999999999999999875   6677765211  3443  334


Q ss_pred             CC-cCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcE
Q 018327           81 TE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKV  154 (358)
Q Consensus        81 ~~-~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v  154 (358)
                      .+ +.|++++++.+.+      .+++++++||.++.  .+++++++     ..++++++   +++..++++..+++ +++
T Consensus        74 ~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~~~~-g~v  141 (401)
T 2ggo_A           74 KDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVLDNQ-NNL  141 (401)
T ss_dssp             CTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEECTT-SSE
T ss_pred             CCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEECCC-CeE
Confidence            44 6788888776543      24899999999876  44666665     24455555   56678888888876 899


Q ss_pred             EEEeecCCCCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhc-CceEEEeecCeEEecCCHHHHHHHHH
Q 018327          155 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLR  228 (358)
Q Consensus       155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~  228 (358)
                      ..+.|||..+.+.+.++|+|+|++++|+.+....     .....++++.+ .. .++..+..+++|.|++||+||.++++
T Consensus       142 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~  220 (401)
T 2ggo_A          142 SKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNK  220 (401)
T ss_dssp             EEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHH
T ss_pred             EEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHH
Confidence            9999999877888999999999999988774211     11124677777 54 47888888889999999999999999


Q ss_pred             HHHHhhc-ccCc------------------ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEE
Q 018327          229 LYLDSLR-KKSS------------------LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  289 (358)
Q Consensus       229 ~~l~~~~-~~~~------------------~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i  289 (358)
                      .+++++. ....                  ..+.+++.+.++++||+++.|+++++|+++++||++|.||.+|.|.+++|
T Consensus       221 ~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i  300 (401)
T 2ggo_A          221 WALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVI  300 (401)
T ss_dssp             HHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEE
T ss_pred             HHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEE
Confidence            8887654 1111                  11335555556667777777777777777788888888888888888889


Q ss_pred             CCCcEECCCcEEeccEEccCCEECCccEEc------------------------CccEECCCcEECCceEEc-------C
Q 018327          290 MRGVRIKKHACISSSIIGWHSTVGQWARVE------------------------NMTILGEDVHVCDEIYSN-------G  338 (358)
Q Consensus       290 ~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~------------------------~~~~i~~~~~i~~~~~i~-------~  338 (358)
                      ++++.|++++.|.+++||++|+||+++.|.                        .+++||+++.||+++.|.       +
T Consensus       301 ~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~  380 (401)
T 2ggo_A          301 MEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAY  380 (401)
T ss_dssp             CTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTT
T ss_pred             cCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCC
Confidence            999999999999889999999999888876                        246666666666665543       5


Q ss_pred             cEEccCceeccCCCCCcccC
Q 018327          339 GVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       339 ~~v~~~~~i~~~~~~~~~~~  358 (358)
                      +++++++.|.+++|++++++
T Consensus       381 ~vi~~gsvv~~~vp~~~~v~  400 (401)
T 2ggo_A          381 ARIYPGAVVNRDVGYGEFFK  400 (401)
T ss_dssp             CEECTTCEECSCBCTTCEEC
T ss_pred             cEECCCCeEccccCCCcEEe
Confidence            67788899999999998764

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=2.2e-47  Score=366.14  Aligned_cols=352  Identities=18%  Similarity=0.274  Sum_probs=269.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||+|+||+|+   +||+|+|++|||||+|+|++|.++|+++++|+++++.+++++|+.++.+.++..+.+..|.
T Consensus        14 ~vvILAaG~GtRm~~~---~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~   90 (501)
T 3st8_A           14 AVLVLAAGPGTRMRSD---TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD   90 (501)
T ss_dssp             EEEEEECSCCGGGCCS---SCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             eEEEECCcCcccCCCC---CCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            4689999999999995   5999999999999999999999999999999999999999999998777788889999999


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      ++.||+++++++++.+.+...+.+++++||.. . ...+..+++.|...+.++++++   ++|..||.+..|++ +++..
T Consensus        91 ~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~-g~v~~  169 (501)
T 3st8_A           91 RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMA  169 (501)
T ss_dssp             SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred             CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccc-eeEEe
Confidence            99999999999999996544458999999983 3 3458999999999999988887   89999999999987 99999


Q ss_pred             EeecCCC----CCCCeEEEEEEEEChhhhhhccC----C---CCCcccchHHHHHhcCc-eEEEeecCeEE--ecCCHHH
Q 018327          157 FVEKPKL----FVGNKINAGIYLLNPAVLDRIEL----R---PTSIEKEVFPKIALEGK-LFAMVLPGFWM--DIGQPRD  222 (358)
Q Consensus       157 ~~ek~~~----~~~~~~~~Giy~~~~~~l~~l~~----~---~~~~~~d~l~~l~~~~~-v~~~~~~~~~~--di~t~~d  222 (358)
                      +.|||..    ...+++++|+|+|+++.|..+..    +   ...+..|.+..+...+. +..+..+..|.  .+++..+
T Consensus       170 ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~  249 (501)
T 3st8_A          170 IVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQ  249 (501)
T ss_dssp             EECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred             eccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHH
Confidence            9999753    35778999999999988875532    1   23445677777776665 55666655443  3455555


Q ss_pred             HHHHHHHHHHhhcc-----------------cCcccccCCcEEecc------e---------------------------
Q 018327          223 YITGLRLYLDSLRK-----------------KSSLKLATGANIVGN------V---------------------------  252 (358)
Q Consensus       223 y~~a~~~~l~~~~~-----------------~~~~~~~~~~~i~~~------~---------------------------  252 (358)
                      +.++...+..+...                 .....+++++.|.++      +                           
T Consensus       250 l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~  329 (501)
T 3st8_A          250 LAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVR  329 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECS
T ss_pred             HHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEe
Confidence            54443332221111                 001112222222222      2                           


Q ss_pred             ------EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC------
Q 018327          253 ------LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN------  320 (358)
Q Consensus       253 ------~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~------  320 (358)
                            .+++++.+++.+.++++++|+++|.||.+|.+.+|+||+++.|++.+.+.+++||++|.||+++.+-+      
T Consensus       330 ~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~  409 (501)
T 3st8_A          330 THGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSK  409 (501)
T ss_dssp             EEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSB
T ss_pred             ecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcc
Confidence                  23334455566666677888888888888888999999999999999999999999999999876533      


Q ss_pred             -ccEECCCcEECCc------eEEc-CcEEccCceeccCCCCCccc
Q 018327          321 -MTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       321 -~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                       +++||++|.||.+      +.|+ ++.+++++.|.+|+|+++++
T Consensus       410 ~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~  454 (501)
T 3st8_A          410 RRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALA  454 (501)
T ss_dssp             CCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEE
T ss_pred             cCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeE
Confidence             2555555555554      5564 78889999999999999764

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=8e-45  Score=346.45  Aligned_cols=331  Identities=22%  Similarity=0.315  Sum_probs=257.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      +|||||||.|+||++   .+||+|+|++|+|||+|+++.|.++++++++|++++..+++.+++.+     ++.+  +.+.
T Consensus        13 ~~vIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-----~i~~--v~~~   82 (468)
T 1hm9_A           13 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTEF--VTQS   82 (468)
T ss_dssp             EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-----SSEE--EECS
T ss_pred             cEEEEcCCCCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-----CcEE--EeCC
Confidence            589999999999986   78999999999999999999999999999999999887777666543     3443  3355


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      .+.|++++++.+++.+... +++|++++||.  +...+++++++.|.+.+.++++++   +++..|+.+..|++ +++..
T Consensus        83 ~~~G~~~sl~~a~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~-g~v~~  160 (468)
T 1hm9_A           83 EQLGTGHAVMMTEPILEGL-SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR  160 (468)
T ss_dssp             SCCCHHHHHHTTHHHHTTC-CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred             ccCChHHHHHHHHHHhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCC-CCEEE
Confidence            6779999999999988422 34899999999  556679999999988877777766   67778999988876 89999


Q ss_pred             EeecCCC----CCCCeEEEEEEEEChhhh-hhccC---C---CCCcccchHHHHHhcC-ceEEEeecCeEEe--cCCHHH
Q 018327          157 FVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGFWMD--IGQPRD  222 (358)
Q Consensus       157 ~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~d--i~t~~d  222 (358)
                      +.|||..    ..+.+.++|+|+|+++.+ +.+..   .   ...+..|+++.+++.+ +++.+.++++|.+  ++|++|
T Consensus       161 ~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~d  240 (468)
T 1hm9_A          161 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA  240 (468)
T ss_dssp             EECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHH
T ss_pred             EEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHH
Confidence            9998752    236789999999999855 44432   1   1233478899888876 6999999999977  569999


Q ss_pred             HHHHHHHHHHhhccc----Cccccc-CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327          223 YITGLRLYLDSLRKK----SSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  297 (358)
Q Consensus       223 y~~a~~~~l~~~~~~----~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~  297 (358)
                      |.+++..+..+....    ....+. +.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|.++.||++|.|+ 
T Consensus       241 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-  319 (468)
T 1hm9_A          241 LATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-  319 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-
Confidence            999988766543221    111122 34567777888888888888888888888888888888888888888888888 


Q ss_pred             CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCc
Q 018327          298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  345 (358)
Q Consensus       298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~  345 (358)
                      ++.|.++.||++|.||+++.|.++++||++++||+++.+.++.++++.
T Consensus       320 ~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~  367 (468)
T 1hm9_A          320 NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENT  367 (468)
T ss_dssp             SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTC
T ss_pred             EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCc
Confidence            888888888888888888888866777777777776666554444443

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=100.00  E-value=3.3e-44  Score=341.48  Aligned_cols=342  Identities=22%  Similarity=0.339  Sum_probs=243.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.|||||||.|+||++   .+||+|+|++|+|||+|+++.|.++++++++|++++..+++++++.+.    +  +.++.+
T Consensus         9 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~----~--~~~v~~   79 (459)
T 4fce_A            9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP----S--LNWVLQ   79 (459)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----------CEEEC
T ss_pred             ceEEEECCCCCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC----C--cEEEeC
Confidence            4699999999999998   799999999999999999999999999999999999878888777652    2  333445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ....|++++++.+++.+.  ..+++++++||.  +...+++++++.|.+  .+++++.   +++..|+++..| + +++.
T Consensus        80 ~~~~g~~~~i~~~~~~~~--~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~  153 (459)
T 4fce_A           80 AEQLGTGHAMQQAAPHFA--DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVRE-N-GDVV  153 (459)
T ss_dssp             SSCCCHHHHHHHHGGGSC--TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEEE-T-TEEE
T ss_pred             CCCCCcHHHHHHHHHhcC--CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEeC-C-CcEE
Confidence            667899999999999984  334999999999  555668999988764  3444444   777889998887 4 8999


Q ss_pred             EEeecCC----CCCCCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcC-ceEEEeecCeE--EecCCHH
Q 018327          156 KFVEKPK----LFVGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW--MDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~~--~di~t~~  221 (358)
                      .+.|||.    ...+.+.++|+|+|+++.+. .+..      ....+..|+++.+.+.+ +++.+..+++|  .+++||+
T Consensus       154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~  233 (459)
T 4fce_A          154 GIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL  233 (459)
T ss_dssp             EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred             EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHH
Confidence            9999864    23567899999999998764 3321      12234467888887765 68899888755  6799999


Q ss_pred             HHHHHHHHHHHhhccc-----------------------CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEE
Q 018327          222 DYITGLRLYLDSLRKK-----------------------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV  278 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~-----------------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i  278 (358)
                      ||..++..+..+....                       ....+.+++.+.+++.||+++.|+++++|. ++.||++|.|
T Consensus       234 Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I  312 (459)
T 4fce_A          234 QLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEI  312 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEE
Confidence            9999987665443210                       111234555555556666666666666664 5677777777


Q ss_pred             CCCcEEeeeEECCCcEECCCcEEe-ccEEccC----------------------------------CEECCcc-------
Q 018327          279 ESGVRLSRCTVMRGVRIKKHACIS-SSIIGWH----------------------------------STVGQWA-------  316 (358)
Q Consensus       279 g~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~----------------------------------~~ig~~~-------  316 (358)
                      +++|.|.+++||++|.|+++|+|. ++.|+++                                  |.||.++       
T Consensus       313 ~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~  392 (459)
T 4fce_A          313 SPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDG  392 (459)
T ss_dssp             CSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCS
T ss_pred             CCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCCCEECCCCEEecccc
Confidence            777776666666666666666665 2333333                                  3333332       


Q ss_pred             ------EEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCcccC
Q 018327          317 ------RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       317 ------~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                            +|+++|+||.+++|..++.|+ ++++++++.|.+|+|++++++
T Consensus       393 ~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~  441 (459)
T 4fce_A          393 ANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVI  441 (459)
T ss_dssp             SCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             ccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEE
Confidence                  333344444444444455554 678899999999999998764

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=100.00  E-value=9.1e-43  Score=331.27  Aligned_cols=330  Identities=21%  Similarity=0.314  Sum_probs=263.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.|||||||.|+||++   .+||+|+|++|+|||+|+++.|..+++++++|++++..+++.+++.++    ++.  ++.+
T Consensus         6 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~~--~v~~   76 (456)
T 2v0h_A            6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE----QVN--WVLQ   76 (456)
T ss_dssp             EEEEEECCCCCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----CCE--EEEC
T ss_pred             ceEEEECCCCCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----CcE--EEeC
Confidence            3689999999999986   789999999999999999999999999999999998877777776642    343  3445


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ..+.|++++++++++.+..  .+++++++||.  +...+++++++.|.+  .+++++.   +++..|+.+..| + +++.
T Consensus        77 ~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~  150 (456)
T 2v0h_A           77 TEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE-N-GNVV  150 (456)
T ss_dssp             SCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE-T-TEEE
T ss_pred             CCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc-C-CcEE
Confidence            6678999999999998842  34899999999  455678999988765  4555554   667778888877 4 8999


Q ss_pred             EEeecCCC----CCCCeEEEEEEEEChhhh-hhccC---C---CCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327          156 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR  221 (358)
Q Consensus       156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~---~---~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~  221 (358)
                      .+.|+|..    ....+.++|+|+|+++.+ +.+..   .   ...+..|+++.+...+ ++..+..+++  |.+++||+
T Consensus       151 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpe  230 (456)
T 2v0h_A          151 AIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRL  230 (456)
T ss_dssp             EEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHH
T ss_pred             EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHH
Confidence            99988652    235689999999999855 34332   1   1233468888887765 5888888654  56899999


Q ss_pred             HHHHHHHHHHHhhccc----Cccccc-CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327          222 DYITGLRLYLDSLRKK----SSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK  296 (358)
Q Consensus       222 dy~~a~~~~l~~~~~~----~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~  296 (358)
                      ||.++++.+..+....    ....+. +.+.+++++.|++++.|+++++|++++.||++|.|+++|.|.+++||++|.|+
T Consensus       231 Dl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~  310 (456)
T 2v0h_A          231 QLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIK  310 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEc
Confidence            9999988665443221    111123 36788999999999999999999989999999999999999999999999999


Q ss_pred             CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCc
Q 018327          297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  345 (358)
Q Consensus       297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~  345 (358)
                      ++|+|.++.||+++.||+++.|.+++.||+++.||+++.+.++.+.++.
T Consensus       311 ~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~  359 (456)
T 2v0h_A          311 PYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGS  359 (456)
T ss_dssp             SSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTTC
T ss_pred             CCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCCC
Confidence            9999999999999999999999988999999888888777655544443

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=100.00  E-value=2.3e-36  Score=268.87  Aligned_cols=228  Identities=21%  Similarity=0.325  Sum_probs=195.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----------   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+++.+|+.+...           
T Consensus         3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   82 (281)
T 3juk_A            3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE   82 (281)
T ss_dssp             CEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHH
T ss_pred             eEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccch
Confidence            689999999999999999999999999999999999999999999999999999988999998864210           


Q ss_pred             ---------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-----HHHHHHHHHhcCCeeEEE
Q 018327           70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-----FAEMIEFHKAHGGEASIM  135 (358)
Q Consensus        70 ---------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-----l~~~~~~~~~~~~~~~~~  135 (358)
                               .++..+.+..+..+.|++++++++++.+.  . ++|++++||.+++.+     ++++++.|.+++. .++.
T Consensus        83 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~-~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~  158 (281)
T 3juk_A           83 NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--N-EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVA  158 (281)
T ss_dssp             HHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--S-SCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEE
T ss_pred             hhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--C-CCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEE
Confidence                     03567777778888999999999999983  3 399999999998888     9999999988776 5554


Q ss_pred             e-----cCCCCeeeEEEcC--CCC--cEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHH
Q 018327          136 V-----DEPSKYGVVVMEE--STG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKI  199 (358)
Q Consensus       136 ~-----~~~~~~~~~~~d~--~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l  199 (358)
                      +     +++..||++..|+  + +  +|..+.|||.  ...+.+.++|+|+|++++|+.+....     .....|+++.+
T Consensus       159 ~~~~~~~~~~~~g~v~~~~~~~-g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l  237 (281)
T 3juk_A          159 IEEVALEEVSKYGVIRGEWLEE-GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQ  237 (281)
T ss_dssp             EEECCTTTGGGSEEEEEEEEET-TEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHH
T ss_pred             EEEechhhcccCCEEEeccCCC-CceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeHHHHHHHH
Confidence            4     4567899999885  5 7  9999999997  45678999999999999998776432     12236889999


Q ss_pred             HhcCceEEEeecCeEEecCCHHHHHHHHHHHHHh
Q 018327          200 ALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDS  233 (358)
Q Consensus       200 ~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~  233 (358)
                      +++++++++..+++|.|++||+||.++++.++..
T Consensus       238 ~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          238 AKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK  271 (281)
T ss_dssp             HHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence            8888999999999999999999999999988763

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=100.00  E-value=2.3e-35  Score=260.58  Aligned_cols=226  Identities=25%  Similarity=0.369  Sum_probs=196.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++. .+++.+++.+ .+.+++.+.+..
T Consensus        25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-~~~~~~~i~~~~  103 (269)
T 4ecm_A           25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-GQEFGVSFTYRV  103 (269)
T ss_dssp             EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-ccccCceEEEee
Confidence            68999999999999999999999999999999999999999999999999999975 4778888774 245677888877


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      +..+.|++++++.+++.+.  . ++|++++||.++..++.++++.|.+++.++++++   +++..||++..|+  ++|..
T Consensus       104 ~~~~~G~~~al~~a~~~~~--~-~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~--g~v~~  178 (269)
T 4ecm_A          104 QDKAGGIAQALGLCEDFVG--N-DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQN--RKIIE  178 (269)
T ss_dssp             CSSCCCHHHHHHTTHHHHT--T-SEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEET--TEEEE
T ss_pred             CCccCcHHHHHHHHHHhcC--C-CcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEcC--CEEEE
Confidence            7788899999999999883  3 4999999999998889999999998888887776   6778899999884  89999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      +.|||..+.+.+.++|+|+|++++|+.+...     ......++++.+.+.+++.++..+++|.|++||+||.++++.++
T Consensus       179 ~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~  258 (269)
T 4ecm_A          179 IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALAR  258 (269)
T ss_dssp             EEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTT
T ss_pred             EEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence            9999987778899999999999999877532     11223688899988889999999999999999999999998765


Q ss_pred             H
Q 018327          232 D  232 (358)
Q Consensus       232 ~  232 (358)
                      +
T Consensus       259 ~  259 (269)
T 4ecm_A          259 D  259 (269)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=100.00  E-value=2.1e-34  Score=253.23  Aligned_cols=227  Identities=30%  Similarity=0.547  Sum_probs=182.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-ccCcEE----
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-KLGIKI----   75 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-~~~~~i----   75 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+++++.+... ..++.+    
T Consensus         3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   82 (259)
T 1tzf_A            3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE   82 (259)
T ss_dssp             CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred             cEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999988889999876321 012221    


Q ss_pred             ---------------EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCC
Q 018327           76 ---------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEP  139 (358)
Q Consensus        76 ---------------~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~  139 (358)
                                     .+..+..+.|++++++.+++.+.  .+++|++++||.+++.++.++++.|.+++..+++.. ..+
T Consensus        83 ~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  160 (259)
T 1tzf_A           83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP  160 (259)
T ss_dssp             TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECCC
T ss_pred             cceeeeeccccccceeeeecccccCcHHHHHHHHHhcC--CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEecCC
Confidence                           12233456799999999998884  234899999999998899999999988777776655 667


Q ss_pred             CCeeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCC
Q 018327          140 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQ  219 (358)
Q Consensus       140 ~~~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t  219 (358)
                      ..||++..| + ++|..+.|||... ..+.++|+|+|++++|+.+.....+++.++++.++++++++++..+++|.|++|
T Consensus       161 ~~~g~v~~~-~-g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t  237 (259)
T 1tzf_A          161 GRFGALDIQ-A-GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT  237 (259)
T ss_dssp             CCSEEEEEE-T-TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCS
T ss_pred             CCccEEEEc-C-CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeCCC
Confidence            889999888 4 8999999998642 568999999999999988765445666788999888889999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018327          220 PRDYITGLRLYLD  232 (358)
Q Consensus       220 ~~dy~~a~~~~l~  232 (358)
                      ++||.++++.+..
T Consensus       238 ~~d~~~a~~~~~~  250 (259)
T 1tzf_A          238 LRDKVYLEGLWEK  250 (259)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987764

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=100.00  E-value=3.2e-33  Score=251.13  Aligned_cols=227  Identities=26%  Similarity=0.353  Sum_probs=188.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----------   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++..+|+++++|++++..+++.+|+.+...           
T Consensus         9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   88 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_dssp             CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----C
T ss_pred             cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccch
Confidence            689999999999999999999999999999999999999999999999999999988889988864110           


Q ss_pred             ----------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec-----c---CHHHHHHHHHhcCCe
Q 018327           70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-----Y---PFAEMIEFHKAHGGE  131 (358)
Q Consensus        70 ----------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~-----~---~l~~~~~~~~~~~~~  131 (358)
                                ..++++.+..+..+.|++++++.+++.+.  . ++|++++||.+++     .   +++++++.|.+.+. 
T Consensus        89 ~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~-~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-  164 (302)
T 2e3d_A           89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--D-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-  164 (302)
T ss_dssp             HHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--S-SCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred             hhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--C-CcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence                      13567777777788899999999999883  3 3999999999886     2   69999999987765 


Q ss_pred             eEEEe---cCCCCeeeEEEc----CCCC---cEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccc
Q 018327          132 ASIMV---DEPSKYGVVVME----ESTG---KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKE  194 (358)
Q Consensus       132 ~~~~~---~~~~~~~~~~~d----~~~~---~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d  194 (358)
                      +++++   +++..||++..+    ++ +   +|..|.|||.  ...+.+.++|+|+|++++++.+....     .....+
T Consensus       165 ~~i~~~~~~~~~~yg~v~~~~~~~~~-g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d  243 (302)
T 2e3d_A          165 SQIMVEPVADVTAYGVVDCKGVELAP-GESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTD  243 (302)
T ss_dssp             EEEEEEECSCGGGSEEEECTTCCCCT-TCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHH
T ss_pred             cEEEEEEccCCCCccEEEecccccCC-CCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHH
Confidence            55555   566789988763    33 6   8999999986  34567999999999999998875421     122357


Q ss_pred             hHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHHH
Q 018327          195 VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       195 ~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~  232 (358)
                      +++.+++.++++++..+++|.|++||++|.++++.++.
T Consensus       244 ~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~  281 (302)
T 2e3d_A          244 AIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGI  281 (302)
T ss_dssp             HHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence            88888877899999999999999999999999966553

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=100.00  E-value=7.2e-33  Score=246.84  Aligned_cols=226  Identities=25%  Similarity=0.408  Sum_probs=187.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEec-cChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |++||||||.|+||+|+|...||+|+|++|||||+|+++.+..+|+++|+|+++ ++.+.+++++.+ .+.+++++.+..
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   82 (296)
T 1mc3_A            4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE   82 (296)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-ccccCceEEEec
Confidence            899999999999999999999999999999999999999999999999999886 466778888875 234577777777


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      +..+.|+++++..+.+.+  .. ++++++.||.++ +.++.++++.|.+.+..++++.   ++|..||++..|++ +++.
T Consensus        83 ~~~~~G~~~al~~a~~~i--~~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~-g~v~  158 (296)
T 1mc3_A           83 QPSPDGLAQAFIIGETFL--NG-EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAI  158 (296)
T ss_dssp             CSSCCCSTHHHHHTHHHH--TT-SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEE
T ss_pred             cCCCCCHHHHHHHHHHHh--CC-CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCC-CcEE
Confidence            778889999999999988  33 378888899854 5679999999876666666654   77889999999886 9999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec-Ce-EEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP-GF-WMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~-~~-~~di~t~~dy~~a~~  228 (358)
                      .|.|||..+.+++.++|+|+|++++++.+..-     ......|+++.+++.+.+.++..+ ++ |.|++|++||.+++.
T Consensus       159 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  238 (296)
T 1mc3_A          159 SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST  238 (296)
T ss_dssp             ECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHH
Confidence            99999977778899999999999998876431     111225778888888888777775 64 999999999999987


Q ss_pred             HHH
Q 018327          229 LYL  231 (358)
Q Consensus       229 ~~l  231 (358)
                      .+.
T Consensus       239 ~~~  241 (296)
T 1mc3_A          239 FVQ  241 (296)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=100.00  E-value=1.7e-32  Score=244.37  Aligned_cols=226  Identities=23%  Similarity=0.396  Sum_probs=187.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEec-cChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |++||||||.|+||+|+|...||+|+|++|||||+|+++.+..+|+++|+|+++ ++.+.+++++.+ .+.+++++.+..
T Consensus         4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   82 (295)
T 1lvw_A            4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV   82 (295)
T ss_dssp             CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred             eEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-ccccCceEEEee
Confidence            899999999999999999999999999999999999999999999999999886 466778888875 234577777777


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      +..+.|+++++..+.+.+  .. ++++++.||.+ .+.++.++++.|.+.+..++++.   .+|..||++..|++ +++.
T Consensus        83 ~~~~~G~~~al~~a~~~i--~~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~  158 (295)
T 1lvw_A           83 QEEPRGIADAFIVGKDFI--GD-SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVI  158 (295)
T ss_dssp             CSSCCCGGGHHHHTHHHH--TT-SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEE
T ss_pred             CCCCCChHHHHHHHHHHh--CC-CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCC-CcEE
Confidence            777889999999999988  33 37888889985 46679999999876666666654   77888999999986 9999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec-C-eEEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~-~-~~~di~t~~dy~~a~~  228 (358)
                      .+.|||..+++++.++|+|+|++++++.+..-     ......|+++.+++.+.+.++..+ + .|.|++|++||.+++.
T Consensus       159 ~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  238 (295)
T 1lvw_A          159 SIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS  238 (295)
T ss_dssp             EEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHH
T ss_pred             EEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHH
Confidence            99999977778899999999999998766321     111225778888888887777775 6 4999999999999987


Q ss_pred             HHH
Q 018327          229 LYL  231 (358)
Q Consensus       229 ~~l  231 (358)
                      .+.
T Consensus       239 ~~~  241 (295)
T 1lvw_A          239 FIE  241 (295)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=100.00  E-value=1.9e-32  Score=244.11  Aligned_cols=226  Identities=23%  Similarity=0.377  Sum_probs=187.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEec-cChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |++||||||.|+||+|+|...||+|+|++|||||+|+++.+..+|+++|+|+++ ++.+.+++++.+ .+.+++++.+..
T Consensus         3 ~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-g~~~g~~i~~~~   81 (293)
T 1fxo_A            3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV   81 (293)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             ceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-ccccCceEEEee
Confidence            479999999999999999999999999999999999999999999999998885 456778888875 234577887777


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      +..+.|+++++..+.+.+  .. ++++++.||.++ +.++.++++.|.+.+..++++.   .+|..||++..|++ +++.
T Consensus        82 ~~~~~G~~~al~~a~~~i--~~-~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~  157 (293)
T 1fxo_A           82 QPSPDGLAQAFLIGESFI--GN-DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAI  157 (293)
T ss_dssp             CSSCCCGGGHHHHTHHHH--TT-SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEE
T ss_pred             CCCCCCHHHHHHHHHHHh--CC-CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCC-CcEE
Confidence            878899999999999988  33 388888999954 5679999999876666666654   77788999999886 9999


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec-C-eEEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP-G-FWMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~-~-~~~di~t~~dy~~a~~  228 (358)
                      .+.|||..+.+.+.++|+|+|++++++.+..-     ......|+++.+++.+.+..+..+ + .|.|++|++||.+++.
T Consensus       158 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~  237 (293)
T 1fxo_A          158 SLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ  237 (293)
T ss_dssp             EEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHH
T ss_pred             EEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHH
Confidence            99999977778899999999999998766421     111225778888888888877775 6 4999999999999987


Q ss_pred             HHH
Q 018327          229 LYL  231 (358)
Q Consensus       229 ~~l  231 (358)
                      .+.
T Consensus       238 ~~~  240 (293)
T 1fxo_A          238 FIA  240 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=100.00  E-value=4.9e-33  Score=249.21  Aligned_cols=228  Identities=22%  Similarity=0.325  Sum_probs=170.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----------   69 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++++|++++..+++.+++.+...           
T Consensus        15 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~   94 (297)
T 2ux8_A           15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS   94 (297)
T ss_dssp             CEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCC
T ss_pred             cEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccch
Confidence            689999999999999999999999999999999999999999999999999999887888888764100           


Q ss_pred             --------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec---cCHHHHHHHHHhcCCeeEEEe--
Q 018327           70 --------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE---YPFAEMIEFHKAHGGEASIMV--  136 (358)
Q Consensus        70 --------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~---~~l~~~~~~~~~~~~~~~~~~--  136 (358)
                              ..+..+.+..+..+.|++++++.+++.+.  . ++|++++||.+++   .+++++++.|.+.+. .++.+  
T Consensus        95 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~-~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~  170 (297)
T 2ux8_A           95 LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--D-EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEE  170 (297)
T ss_dssp             GGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--S-SCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-
T ss_pred             hhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--C-CcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEe
Confidence                    02455666667778899999999998883  3 4999999999877   459999999987665 44444  


Q ss_pred             ---cCCCCeeeEEEcC-CCC--cEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcC
Q 018327          137 ---DEPSKYGVVVMEE-STG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG  203 (358)
Q Consensus       137 ---~~~~~~~~~~~d~-~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~  203 (358)
                         +++..||++..|+ +++  +|..|.|||.  ...+.+.++|+|+|++++++.+....     .....++++.+++.+
T Consensus       171 ~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~  250 (297)
T 2ux8_A          171 VPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQ  250 (297)
T ss_dssp             ----------CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTTS
T ss_pred             cCcccCCCCCeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhcC
Confidence               3556788887653 225  8999999985  34567899999999999888775321     122367888888888


Q ss_pred             ceEEEeecCeEEecCCHHHHHHHHHHHHH
Q 018327          204 KLFAMVLPGFWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       204 ~v~~~~~~~~~~di~t~~dy~~a~~~~l~  232 (358)
                      +++++..+++|.|++||+||.++++.++.
T Consensus       251 ~v~~~~~~~~w~dIgt~~dl~~a~~~~~~  279 (297)
T 2ux8_A          251 PFHGVTFQGTRYDCGDKAGFIQANLAVAL  279 (297)
T ss_dssp             CEEEEECSSEEEETTSHHHHHHHHHHHHH
T ss_pred             CEEEEEecceEEeCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999977664

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=100.00  E-value=6.1e-32  Score=244.63  Aligned_cols=229  Identities=23%  Similarity=0.311  Sum_probs=184.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh------------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------   68 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~------------   68 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++++..+|+++++|++++..+.+.+|+.+..            
T Consensus        13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   92 (323)
T 2pa4_A           13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKT   92 (323)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCH
T ss_pred             eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchh
Confidence            78999999999999999999999999999999999999999999999999999998788888775310            


Q ss_pred             -------h-ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHhcCCeeEEEe--
Q 018327           69 -------A-KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMV--  136 (358)
Q Consensus        69 -------~-~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--~~l~~~~~~~~~~~~~~~~~~--  136 (358)
                             + ..+..+.++.+..+.|++++++.+++.+.. ..+.|++++||.+++  .+++.+++.|.+.+. .++.+  
T Consensus        93 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~  170 (323)
T 2pa4_A           93 DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVE  170 (323)
T ss_dssp             HHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEE
T ss_pred             hhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEE
Confidence                   0 024566666677778999999999988842 112399999999886  459999999887654 34443  


Q ss_pred             ---cCCCCeeeEEEc----CCCC--cEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHH
Q 018327          137 ---DEPSKYGVVVME----ESTG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIA  200 (358)
Q Consensus       137 ---~~~~~~~~~~~d----~~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~  200 (358)
                         +++..||++..|    ++ +  +|..|.|||.  ...+.+.++|+|+|++++|+.+....     .....++++.++
T Consensus       171 ~~~~~~~~yg~v~~d~~~~~~-~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~  249 (323)
T 2pa4_A          171 VSEADVSKYGIFEIEADTKDS-DVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLI  249 (323)
T ss_dssp             CCGGGGGGSEEEEEEECCSST-TEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHH
T ss_pred             ecccccCCccEEEeCCcccCC-CceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHH
Confidence               356789998877    43 4  8999999984  34567899999999999998775321     112267888888


Q ss_pred             hc-CceEEEeecCeEEecCCHHHHHHHHHHHHH
Q 018327          201 LE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       201 ~~-~~v~~~~~~~~~~di~t~~dy~~a~~~~l~  232 (358)
                      ++ .++.++..+++|.|++||+||.++++.++.
T Consensus       250 ~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~  282 (323)
T 2pa4_A          250 DEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGL  282 (323)
T ss_dssp             HTTCCEEEEECCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhh
Confidence            77 679999999999999999999999976653

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.6e-32  Score=243.67  Aligned_cols=225  Identities=16%  Similarity=0.211  Sum_probs=185.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCccccc--CCcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEE
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEF--ANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC   77 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi--~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~   77 (358)
                      |++||||||.|+||+|     ||+|+|+  +|+|||+|+++.+..+|+++++|++++. .+.+++|+.+. ..++.++.+
T Consensus         6 ~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~~i~~   79 (303)
T 3pnn_A            6 PTLFVLAAGMGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTK-YEGRIPVEL   79 (303)
T ss_dssp             CEEEEECTTCBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHH-HTTTSCEEE
T ss_pred             eEEEEECCCCcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHH-hccCCcEEE
Confidence            4799999999999998     7999999  5999999999999999999999999998 48899998762 233455556


Q ss_pred             eccC---------------CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHh---cCCeeEEEe--
Q 018327           78 SQET---------------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA---HGGEASIMV--  136 (358)
Q Consensus        78 ~~~~---------------~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~---~~~~~~~~~--  136 (358)
                      ..+.               ++.|++++++++++.+  .  ++|+|++||.+++.+ ++++++.|.+   ++.++++++  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i--~--~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~  155 (303)
T 3pnn_A           80 VFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI--R--EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR  155 (303)
T ss_dssp             EECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC--C--SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred             EecccccccccccccccccccCCcHHHHHHHHHhc--C--CCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence            5554               5789999999999988  2  399999999998876 8999999875   456777776  


Q ss_pred             -cCC-CCe-----eeEEEcCCCCcEEEEeecCCC-------------------CCCCeEEEEEEEEChhhhhhccC----
Q 018327          137 -DEP-SKY-----GVVVMEESTGKVEKFVEKPKL-------------------FVGNKINAGIYLLNPAVLDRIEL----  186 (358)
Q Consensus       137 -~~~-~~~-----~~~~~d~~~~~v~~~~ek~~~-------------------~~~~~~~~Giy~~~~~~l~~l~~----  186 (358)
                       +++ +.|     |++..|++ ++|..|.|||..                   +.+.++++|+|+|++++|+.+..    
T Consensus       156 ~~~~~~~~g~~~~G~v~~d~~-g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~  234 (303)
T 3pnn_A          156 VGNTLSESGGVSRGVCQVDEK-HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFIN  234 (303)
T ss_dssp             GGGSCBTTBCEEEEEEEECTT-SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHH
T ss_pred             CCCccCccCceeeeeEeeCCC-CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHH
Confidence             556 666     58888876 999999999853                   35789999999999999987742    


Q ss_pred             ---------CCCCcccchHHHHHhcC--ceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc
Q 018327          187 ---------RPTSIEKEVFPKIALEG--KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK  236 (358)
Q Consensus       187 ---------~~~~~~~d~l~~l~~~~--~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~  236 (358)
                               ....+..|+++.+++++  +++++..+++|.|++||+||.++++.+.+.+..
T Consensus       235 ~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~~~  295 (303)
T 3pnn_A          235 FLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTEA  295 (303)
T ss_dssp             HHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHHHc
Confidence                     12233468889998887  699999999999999999999999887665444

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.98  E-value=5.1e-32  Score=236.58  Aligned_cols=217  Identities=20%  Similarity=0.320  Sum_probs=168.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHH-CCCCEEEEEeccChHHHHHHHHhhhhccCc--EEEEe
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICS   78 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~--~i~~~   78 (358)
                      .+||||||.|+||+|+|..+||+|+|++|||||+|+|+.+.. +|++++++++++..+ +.+++.+..+.++.  ...+.
T Consensus         1 ~~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (255)
T 4evw_A            1 MIVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIAE   79 (255)
T ss_dssp             CEEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEEE
T ss_pred             CEEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEEE
Confidence            379999999999999999999999999999999999999999 799999999998755 66666653333331  12344


Q ss_pred             ccCCcCCCchHHHHHHhhccC---CCCCcEEEEeCCeee-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCC
Q 018327           79 QETEPLGTAGPLALARDKLID---DTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEEST  151 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~---~~~~~~lv~~gD~i~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~  151 (358)
                      .+..+.|++++++++.+.+..   ..+++|+|++||.++ +.++.++     ..+.++++++   +++ .||++..|++ 
T Consensus        80 ~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~p-~yG~v~~d~~-  152 (255)
T 4evw_A           80 LHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGGD-NWSFAKPEHA-  152 (255)
T ss_dssp             ESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCSS-CSCEEEESST-
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCCC-ceeEEEECCC-
Confidence            567788999999999998831   123489999999988 4556543     2445667766   444 9999999876 


Q ss_pred             C--cEEEEeecCCCCCCCeEEEEEEEEChhh-h-----hhccC------CCCCcccchHHHHHhcC-ceEEEeec-CeEE
Q 018327          152 G--KVEKFVEKPKLFVGNKINAGIYLLNPAV-L-----DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLP-GFWM  215 (358)
Q Consensus       152 ~--~v~~~~ek~~~~~~~~~~~Giy~~~~~~-l-----~~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~-~~~~  215 (358)
                      +  +|..+.||+  ..++++++|+|+|++.. |     +.+..      +...+..|+++.+++++ .+.++.++ ++|.
T Consensus       153 g~~~V~~i~EK~--~~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~  230 (255)
T 4evw_A          153 GSTKVIQTAEKN--PISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVI  230 (255)
T ss_dssp             TCCBEEEEESSS--CSSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCE
T ss_pred             CCeEEEEEEecc--CccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEE
Confidence            7  999999994  46789999999999852 2     22322      23345578999998876 48888875 8999


Q ss_pred             ecCCHHHHHHHHH
Q 018327          216 DIGQPRDYITGLR  228 (358)
Q Consensus       216 di~t~~dy~~a~~  228 (358)
                      |++||++|.++.+
T Consensus       231 digt~~~l~~~~~  243 (255)
T 4evw_A          231 FCGVPDEYTDFLR  243 (255)
T ss_dssp             ECCSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHh
Confidence            9999999998864

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.96  E-value=1.2e-29  Score=228.09  Aligned_cols=222  Identities=21%  Similarity=0.320  Sum_probs=149.3

Q ss_pred             CeEEEEecCCccccCcCCC-CCCCccccc-CCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCc-EEE
Q 018327            1 MKALILVGGFGTRLRPLTL-SVPKPLVEF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGI-KII   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~-~~pK~llpi-~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~-~i~   76 (358)
                      |+|||||||.|+||+|+|. ..||+|+|+ +|+|||+|+++++..+ +++++|++++.. +.+.+++.+.   +++ .+.
T Consensus         5 ~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~---~~~~~~~   80 (308)
T 2qh5_A            5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE---IKNKSVG   80 (308)
T ss_dssp             EEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT---CSSCEEE
T ss_pred             cEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh---hCCCccE
Confidence            5799999999999999996 799999999 5999999999999999 999999999864 5677777651   355 555


Q ss_pred             EeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHH---HHhcCCeeEEEe---cCCCCeeeEEEc
Q 018327           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEF---HKAHGGEASIMV---DEPSKYGVVVME  148 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~d  148 (358)
                      ++.+..+.|++.++..+...+  ..++.|++++||.++ +.+ +.++++.   |.+.+..+++.+   +.+..||++..|
T Consensus        81 ~i~~~~~~gt~~al~~a~~~l--~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d  158 (308)
T 2qh5_A           81 FLLESLSKNTANAIALSALMS--DKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESP  158 (308)
T ss_dssp             EEEESSCCCHHHHHHHHHHTS--CTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECS
T ss_pred             EEeCCCCCChHHHHHHHHHHh--CCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEC
Confidence            566677789999999999888  333359999999987 556 8899887   666666777766   455789999887


Q ss_pred             CCCCcEEEEeecCCCCC--------CCeEEEEEEEEChhhh-hhccCC---------------C------CCc---ccch
Q 018327          149 ESTGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIELR---------------P------TSI---EKEV  195 (358)
Q Consensus       149 ~~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~~---------------~------~~~---~~d~  195 (358)
                      ++ ++|..|.|||....        +.++++|+|+|+++.| +.+...               .      ..+   ..++
T Consensus       159 ~~-~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  237 (308)
T 2qh5_A          159 NG-LDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKS  237 (308)
T ss_dssp             SS-SBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHH
T ss_pred             CC-CEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHH
Confidence            65 89999999986321        4689999999999875 332100               0      111   1244


Q ss_pred             HH--------H-HHhc-CceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          196 FP--------K-IALE-GKLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       196 l~--------~-l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      ++        + ++++ .+++++..+++|.|++|+++|.++++.
T Consensus       238 ~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~  281 (308)
T 2qh5_A          238 MQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAAN  281 (308)
T ss_dssp             HHTSCCCCHHHHTTTTCSCEEEEECCSCCBC-------------
T ss_pred             HhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhc
Confidence            43        2 4554 579999999999999999999998753

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.95  E-value=5.9e-28  Score=211.01  Aligned_cols=213  Identities=23%  Similarity=0.348  Sum_probs=159.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++++|++++..+++..+...    +++.+.....
T Consensus        26 ~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~----~~~~iv~~~~  101 (254)
T 1jyk_A           26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEK----YGVRLVFNDK  101 (254)
T ss_dssp             CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHH----HCCEEEECTT
T ss_pred             ceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHh----CCcEEEECCC
Confidence            579999999999999999999999999999999999999999999999999999876666544433    3666655555


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEEecCC-CCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVDEP-SKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~v~~~~  158 (358)
                      ..+.|++++++.+.+.+  .   ++++++||.++..+ +..+    .+.+...++...++ ..|+++ .|++ ++|..+.
T Consensus       102 ~~~~g~~~al~~a~~~~--~---~~lv~~~D~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~v~-~d~~-g~v~~~~  170 (254)
T 1jyk_A          102 YADYNNFYSLYLVKEEL--A---NSYVIDADNYLFKNMFRND----LTRSTYFSVYREDCTNEWFLV-YGDD-YKVQDII  170 (254)
T ss_dssp             TTTSCTHHHHHTTGGGC--T---TEEEEETTEEESSCCCCSC----CCSEEEEECEESSCSSCCEEE-ECTT-CBEEEEE
T ss_pred             ccCCCcHHHHHHHHHHC--C---CEEEEeCCcccCHHHHHHH----HhCCceEEEEcccCCCCeEEE-ECCC-CeEEEEE
Confidence            55678999999888777  2   58899999987654 3322    22222222222444 357755 6776 8999999


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhcc-------CC---CCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIE-------LR---PTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYITGL  227 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~-------~~---~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~a~  227 (358)
                      |+|.   ..+.++|+|+|+++.++.+.       +.   ...+..|+++.+.+..++.++.++ ++|.+++|++||.+++
T Consensus       171 e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~  247 (254)
T 1jyk_A          171 VDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE  247 (254)
T ss_dssp             CCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHH
T ss_pred             ECCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHH
Confidence            9753   45789999999987443221       11   223446677777777789988887 7999999999999998


Q ss_pred             HHHH
Q 018327          228 RLYL  231 (358)
Q Consensus       228 ~~~l  231 (358)
                      +.+.
T Consensus       248 ~~l~  251 (254)
T 1jyk_A          248 EILK  251 (254)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            7653

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.95  E-value=9.2e-27  Score=203.19  Aligned_cols=217  Identities=19%  Similarity=0.211  Sum_probs=167.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||+|.|+|| |     ||+|+|++|||||+|+++.+..+|+++|+|+++  .+++.+++.+    +++++.+..+.
T Consensus         4 ~aiIlA~G~stRl-p-----~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~----~g~~v~~~~~~   71 (252)
T 3oam_A            4 TVVIPARYQSTRL-P-----GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA----FGGVVCMTSPN   71 (252)
T ss_dssp             EEEEECCCCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTT
T ss_pred             EEEEecCcCCCCC-C-----CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH----cCCEEEEcCCC
Confidence            5899999999999 3     799999999999999999999999999999985  3778877765    37788777677


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCe-----eeEEEcCCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKY-----GVVVMEEST  151 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~d~~~  151 (358)
                      .+.|++. +..+.+.+.....+.|++++||.  +...+++++++.|.+++.++++++   +++..|     +.+..|++ 
T Consensus        72 ~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~-  149 (252)
T 3oam_A           72 HQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKS-  149 (252)
T ss_dssp             CCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTT-
T ss_pred             CCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCC-
Confidence            7778876 56666666311334899999998  345679999999988777777766   566666     88888887 


Q ss_pred             CcEEEEeecCCC-------------CCCCeEEEEEEEEChhhhhhccCC-CCCccc----chHHHHHhcCceEEEeec-C
Q 018327          152 GKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVLP-G  212 (358)
Q Consensus       152 ~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~v~~~~~~-~  212 (358)
                      |++++|.++|-.             ..+.+.++|+|+|++++|+.+... +..++.    +.++.+....++.++..+ .
T Consensus       150 g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~  229 (252)
T 3oam_A          150 GYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEA  229 (252)
T ss_dssp             SBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred             CeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCC
Confidence            999999988642             235689999999999999987533 233321    334444445578887654 5


Q ss_pred             eEEecCCHHHHHHHHHHHHH
Q 018327          213 FWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       213 ~~~di~t~~dy~~a~~~~l~  232 (358)
                      +|.++|||+||.++++.+..
T Consensus       230 ~~~~idt~~dl~~a~~~~~~  249 (252)
T 3oam_A          230 PPAGVDTPEDLEVVRRIVAE  249 (252)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHh
Confidence            78999999999999876654

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.94  E-value=4.6e-27  Score=212.96  Aligned_cols=219  Identities=24%  Similarity=0.316  Sum_probs=161.3

Q ss_pred             CeEEEEecCCccccCcCC-CCCCCcccccCC-cchHHHHHHHHHHC-CCCEEEEEeccC-hHHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVGGFGTRLRPLT-LSVPKPLVEFAN-KPMILHQIEALKAV-GVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t-~~~pK~llpi~g-~pli~~~l~~l~~~-gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~   76 (358)
                      |++||||||.|+||+|+| ...||+|+|++| +|||+|+++++..+ ++++++|++++. .+.+.+++.+...   ..+ 
T Consensus         2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~---~~i-   77 (336)
T 2x65_A            2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPD---ENI-   77 (336)
T ss_dssp             CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCG---GGE-
T ss_pred             eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcccc---ceE-
Confidence            799999999999999998 789999999998 99999999999997 799999999986 4567777765311   122 


Q ss_pred             EeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--CHHHHH----HHHHhcCCeeEEEe---cCCCCeeeEEE
Q 018327           77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--PFAEMI----EFHKAHGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~--~l~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~  147 (358)
                       +.++.+.|++.++..+...+  ..++.+++++||.++..  ++..++    +.|.+.+..+++.+   .....||++..
T Consensus        78 -i~e~~~~gta~ai~~a~~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~  154 (336)
T 2x65_A           78 -IAEPMKKNTAPACFIGTKLA--DDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEI  154 (336)
T ss_dssp             -EEESSCCCHHHHHHHHHTTS--CTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEE
T ss_pred             -EeCCCCCCcHHHHHHHHHhh--CCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEE
Confidence             33456789999999888765  33347999999997753  354444    44555456666666   33468999987


Q ss_pred             cCC----CCcEEEEeecCCCCC--------CCeEEEEEEEEChhhh-hhccCC-CC-------------CcccchHHH--
Q 018327          148 EES----TGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIELR-PT-------------SIEKEVFPK--  198 (358)
Q Consensus       148 d~~----~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~l-~~l~~~-~~-------------~~~~d~l~~--  198 (358)
                      +++    .++|..|.|||....        ..++++|+|+|+++.+ +.+... +.             ++..+.++.  
T Consensus       155 ~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~  234 (336)
T 2x65_A          155 GEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVP  234 (336)
T ss_dssp             EEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSC
T ss_pred             CCccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCc
Confidence            652    158999999986321        2478999999999876 343210 00             122344443  


Q ss_pred             -------HHhc-CceEEEeecCeEEecCCHHHHHHH
Q 018327          199 -------IALE-GKLFAMVLPGFWMDIGQPRDYITG  226 (358)
Q Consensus       199 -------l~~~-~~v~~~~~~~~~~di~t~~dy~~a  226 (358)
                             +.++ .++++++.+++|.|++|+++|.++
T Consensus       235 ~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          235 SISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             CCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             cccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence                   3333 579999999999999999999888

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.94  E-value=4.7e-25  Score=191.73  Aligned_cols=212  Identities=21%  Similarity=0.194  Sum_probs=156.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||+|.|+||+      ||+|+|++|||||+|+++.+.++|+++|+|+++.  +++.+++.+    ++..+.+..+.
T Consensus        11 ~aIIlA~G~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~~--~~i~~~~~~----~g~~v~~~~~~   78 (256)
T 3tqd_A           11 RVIIPARFDSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATDD--KRIRQVAED----FGAVVCMTSSD   78 (256)
T ss_dssp             EEEEECCCC---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCTT
T ss_pred             eEEEEcCCCCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECCH--HHHHHHHHH----cCCeEEEeCCC
Confidence            69999999999994      7999999999999999999999999999999863  677777764    47777776666


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhc-CCeeE-EEe--------cCCCCeeeEEEcC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAH-GGEAS-IMV--------DEPSKYGVVVMEE  149 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~-~~~~~-~~~--------~~~~~~~~~~~d~  149 (358)
                      .+.|+.. +..+.+.+.....+.++++.||..+  ...++.+++.+.++ +.+++ +++        .+|...++ ..|+
T Consensus        79 ~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkv-v~d~  156 (256)
T 3tqd_A           79 HQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKV-VLNR  156 (256)
T ss_dssp             CCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEE-EECT
T ss_pred             CCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEE-EECC
Confidence            6667754 7777777732133489999999933  45689999998774 33443 333        23444444 5677


Q ss_pred             CCCcEEEEeecCCC-CC-------------CCeEEEEEEEEChhhhhhccCC-CCCccc----chHHHHHhcCceEEEee
Q 018327          150 STGKVEKFVEKPKL-FV-------------GNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVL  210 (358)
Q Consensus       150 ~~~~v~~~~ek~~~-~~-------------~~~~~~Giy~~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~v~~~~~  210 (358)
                      + |++++|.++|.. ++             +.+...|+|.|++++++.+..- +..++.    +.++.|....+++++..
T Consensus       157 ~-g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~  235 (256)
T 3tqd_A          157 R-NYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVA  235 (256)
T ss_dssp             T-SBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred             C-CEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEe
Confidence            6 999999999752 21             4689999999999999987533 333332    34555556667999998


Q ss_pred             cCe-EEecCCHHHHHHHHH
Q 018327          211 PGF-WMDIGQPRDYITGLR  228 (358)
Q Consensus       211 ~~~-~~di~t~~dy~~a~~  228 (358)
                      +++ |.++|||+||.++++
T Consensus       236 ~~~~~~~idtpeDl~~a~~  254 (256)
T 3tqd_A          236 KSKCPPGVDTEEDLERVRA  254 (256)
T ss_dssp             SSCCCCCCSSHHHHHHHHT
T ss_pred             CCCCCCCcCCHHHHHHHHH
Confidence            874 899999999998864

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.93  E-value=2.1e-26  Score=208.73  Aligned_cols=218  Identities=23%  Similarity=0.344  Sum_probs=156.5

Q ss_pred             CeEEEEecCCccccCcCC-CCCCCcccccCC-cchHHHHHHHHHHC-CCCEEEEEeccCh-HHHHHHHHhhhhccCcEEE
Q 018327            1 MKALILVGGFGTRLRPLT-LSVPKPLVEFAN-KPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t-~~~pK~llpi~g-~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~   76 (358)
                      |.+||||||.|+||+|+| ..+||+|+|++| +|||+|+++++..+ ++++++|++++.. +.+.+++.+      ..+ 
T Consensus         3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~~~-   75 (337)
T 2cu2_A            3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------IRL-   75 (337)
T ss_dssp             EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------SEE-
T ss_pred             eEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------Cce-
Confidence            579999999999999999 689999999998 99999999999998 8999999999853 344444443      222 


Q ss_pred             EeccCCcCCCchHHHHHHhhccC-CCCCcEEEEeCCeeecc--CHHHHHHHHH---hcCCeeEEEe---cCCCCeeeEEE
Q 018327           77 CSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISEY--PFAEMIEFHK---AHGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus        77 ~~~~~~~~g~~~sl~~~~~~i~~-~~~~~~lv~~gD~i~~~--~l~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~  147 (358)
                       +.++.+.|++.++..+.. +.. ..++.+++++||.++..  .+..+++...   +.+..+|+.+   ..+..||++..
T Consensus        76 -i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~  153 (337)
T 2cu2_A           76 -LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL  153 (337)
T ss_dssp             -EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred             -EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEE
Confidence             234556789998888876 532 12348999999997753  3555555432   2245556665   34568999987


Q ss_pred             cCC---CCcEEEEeecCCCC-------CCCeEEEEEEEEChhhh-hhccCC-CC---Cc--------ccchHHH------
Q 018327          148 EES---TGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVL-DRIELR-PT---SI--------EKEVFPK------  198 (358)
Q Consensus       148 d~~---~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l-~~l~~~-~~---~~--------~~d~l~~------  198 (358)
                      +++   .++|..|.|||...       .+.++++|+|+|+++.| +.+... +.   .+        ..+.++.      
T Consensus       154 ~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~si  233 (337)
T 2cu2_A          154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI  233 (337)
T ss_dssp             EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred             CCcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchH
Confidence            642   15899999998621       12689999999999877 444211 00   00        0223332      


Q ss_pred             ---HHhc-CceEEEeecCeEEecCCHHHHHHHH
Q 018327          199 ---IALE-GKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       199 ---l~~~-~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                         ++++ .++++++.+++|.|++|+++|.++.
T Consensus       234 dy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             HHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence               3444 5799999999999999999998884

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.92  E-value=1.9e-24  Score=188.75  Aligned_cols=213  Identities=19%  Similarity=0.205  Sum_probs=159.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||+|.|+||.      +|+|+|++|||||+|+++.+.++++++|+|+++  .+++.+++.+    +++.+.+..+.
T Consensus        20 ~aIIlA~G~stRlp------~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~----~g~~v~~~~~~   87 (264)
T 3k8d_A           20 VVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEA----AGGEVCMTRAD   87 (264)
T ss_dssp             EEEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH----TTCEEEECCTT
T ss_pred             EEEEEcCCCCCCCC------CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH----cCCEEEEecCC
Confidence            69999999999993      499999999999999999999999999999885  3667777664    36777666666


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cC------CCCeeeEEEcCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DE------PSKYGVVVMEES  150 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~d~~  150 (358)
                      .+.|+.. +..+.+.+.....+.++++.||.  +....++.+++.+.+.+.++++++   ++      |.... +..|++
T Consensus        88 ~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vk-Vv~d~~  165 (264)
T 3k8d_A           88 HQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK-VVLDAE  165 (264)
T ss_dssp             CCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCE-EEECTT
T ss_pred             CCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceE-EEECCC
Confidence            6667754 77777766322334899999999  345669999999987776666665   33      33333 446776


Q ss_pred             CCcEEEEeecCCC-C------------CCCeEEEEEEEEChhhhhhccCC-CCCccc----chHHHHHhcCceEEEee-c
Q 018327          151 TGKVEKFVEKPKL-F------------VGNKINAGIYLLNPAVLDRIELR-PTSIEK----EVFPKIALEGKLFAMVL-P  211 (358)
Q Consensus       151 ~~~v~~~~ek~~~-~------------~~~~~~~Giy~~~~~~l~~l~~~-~~~~~~----d~l~~l~~~~~v~~~~~-~  211 (358)
                       |++.+|.++|.. .            .+.+.++|+|.|++++++.+... +..++.    +.++.|....+++.+.. .
T Consensus       166 -g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~  244 (264)
T 3k8d_A          166 -GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQE  244 (264)
T ss_dssp             -SBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSC
T ss_pred             -CeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCC
Confidence             999999999752 1            25689999999999999987532 222321    33455555567888754 4


Q ss_pred             CeEEecCCHHHHHHHHHH
Q 018327          212 GFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       212 ~~~~di~t~~dy~~a~~~  229 (358)
                      .+|.++|||+||.++++.
T Consensus       245 ~~~~~IdtpeDl~~a~~~  262 (264)
T 3k8d_A          245 VPGTGVDTPEDLERVRAE  262 (264)
T ss_dssp             CCSCCCCSHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
Confidence            578999999999998753

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.92  E-value=4.9e-24  Score=185.15  Aligned_cols=216  Identities=16%  Similarity=0.161  Sum_probs=160.3

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHH-HHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l-~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      ..|||||+|.|+||++      |+|+|++|||||+|++ +.+.++++++|+|+++.  +++.+++.+    +++.+.+..
T Consensus         2 ~~aiIlA~G~stR~~~------K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~----~g~~v~~~~   69 (253)
T 4fcu_A            2 KHIVIPARFSSSRLPG------KPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA----EGVDVVLTS   69 (253)
T ss_dssp             EEEEEECCSCCTTSTT------GGGSEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT----TTCCEEECC
T ss_pred             eEEEEEeCCCCCCCCC------CceeeECCeEhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH----cCCeEEEeC
Confidence            1489999999999964      9999999999999999 99998899999999974  667766654    366666555


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcC--CeeEEEe--------cCCCCeeeEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHG--GEASIMV--------DEPSKYGVVVM  147 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~  147 (358)
                      +..+.|+ +++..+.+.+.....+.++++.||. + ....++.+++.+.+..  ..+++++        .+|..+. +..
T Consensus        70 ~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~k-vv~  147 (253)
T 4fcu_A           70 ADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVK-VVM  147 (253)
T ss_dssp             TTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCE-EEE
T ss_pred             CCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccE-EEE
Confidence            5555566 4788888777422334899999999 3 3456999999988763  2345554        3555554 456


Q ss_pred             cCCCCcEEEEeecCCC-------------CCCCeEEEEEEEEChhhhhhccCC-CCCcc-c---chHHHHHhcCceEEEe
Q 018327          148 EESTGKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELR-PTSIE-K---EVFPKIALEGKLFAMV  209 (358)
Q Consensus       148 d~~~~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~-~---d~l~~l~~~~~v~~~~  209 (358)
                      |++ |++++|.++|-.             ....+.++|+|+|++++|..+... ...++ .   +.++.+....+++++.
T Consensus       148 d~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~  226 (253)
T 4fcu_A          148 SKQ-NEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAV  226 (253)
T ss_dssp             CTT-SBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred             CCC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEE
Confidence            776 999999987641             124578999999999999987643 22232 1   3344444555799999


Q ss_pred             ecCe-EEecCCHHHHHHHHHHHH
Q 018327          210 LPGF-WMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       210 ~~~~-~~di~t~~dy~~a~~~~l  231 (358)
                      .+++ |.++|||+||.++++.+.
T Consensus       227 ~~~~~~~~IdtpeDL~~a~~~l~  249 (253)
T 4fcu_A          227 AEANLPPGVDTQADLDRLNNMPV  249 (253)
T ss_dssp             CSSCCCCCCCSHHHHHHHHTSCG
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHH
Confidence            9988 999999999999976543

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.91  E-value=6.8e-23  Score=176.98  Aligned_cols=208  Identities=18%  Similarity=0.220  Sum_probs=150.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||||.|+||+      ||+|+|++|+|||+|+++.+..+ +++++|++++  +++.+++.++     +.+.+..+.
T Consensus         4 ~aiIlA~G~g~R~~------~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~-----~~~~~~~~~   69 (234)
T 2y6p_A            4 AVIIPARLGSTRLK------EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL-----CEVFLTPSD   69 (234)
T ss_dssp             EEEEECCSCCTTTT------TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----SEEEECCTT
T ss_pred             EEEEEcCCCCCCCC------CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----eEEEECCcc
Confidence            58999999999996      79999999999999999999999 9999999876  6677776642     455444444


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEec------CCCCeeeEEEcCCCCc
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVD------EPSKYGVVVMEESTGK  153 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~  153 (358)
                      ...|++.++ .+.+.+  . .+.+++++||. +.+ .+++++++.|.+.+..++++..      ++..+++ ..|++ |+
T Consensus        70 ~~~g~~~~~-~~~~~~--~-~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-g~  143 (234)
T 2y6p_A           70 LPSGSDRVL-YVVRDL--D-VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKV-VLDRE-GY  143 (234)
T ss_dssp             CCSHHHHHH-HHHTTC--C-CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEE-EECTT-SB
T ss_pred             cccchHHHH-HHHHhC--C-CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEE-EEcCC-CC
Confidence            455666544 455555  2 34899999999 665 5699999998877643444432      3444443 34665 89


Q ss_pred             EEEEeecCCCC-C-----CCeEEEEEEEEChhhhhhccCCC-CCcc-cc---hHHHHHhcCceEEEeecCeEEecCCHHH
Q 018327          154 VEKFVEKPKLF-V-----GNKINAGIYLLNPAVLDRIELRP-TSIE-KE---VFPKIALEGKLFAMVLPGFWMDIGQPRD  222 (358)
Q Consensus       154 v~~~~ek~~~~-~-----~~~~~~Giy~~~~~~l~~l~~~~-~~~~-~d---~l~~l~~~~~v~~~~~~~~~~di~t~~d  222 (358)
                      +..+.++|... +     +.+.++|+|+|+++.+..+.... ..+. .|   .++.+....++.++..+++|.|++||+|
T Consensus       144 v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~d  223 (234)
T 2y6p_A          144 ALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEED  223 (234)
T ss_dssp             EEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHH
T ss_pred             EeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHH
Confidence            99999987421 1     35789999999999887654221 1111 11   1233344667999999999999999999


Q ss_pred             HHHHHHH
Q 018327          223 YITGLRL  229 (358)
Q Consensus       223 y~~a~~~  229 (358)
                      |..++..
T Consensus       224 l~~a~~~  230 (234)
T 2y6p_A          224 LKIVEEK  230 (234)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999764

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.90  E-value=3.4e-22  Score=175.53  Aligned_cols=218  Identities=17%  Similarity=0.197  Sum_probs=152.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.|||||||.|+||+      +|+|+|++|+|||+|+++.+..+++++|+|++++  +++.+++.+    +++.+.....
T Consensus         3 ~~aiIlA~G~g~R~~------~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~   70 (262)
T 1vic_A            3 FTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCMTSV   70 (262)
T ss_dssp             CEEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCC
T ss_pred             cEEEEEcCCCCCCCC------CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh----cCCEEEECCc
Confidence            469999999999994      4999999999999999999999999999999875  566666654    3566644323


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCC-----CCeeeEEEcCC
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEP-----SKYGVVVMEES  150 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~d~~  150 (358)
                      ..+.|++ ++..+...+.....+.+++++||.  +...+++.+++.+.+.+.++++++   .++     ..+..+..+++
T Consensus        71 ~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (262)
T 1vic_A           71 NHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD  149 (262)
T ss_dssp             SSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred             cccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCC
Confidence            3344554 455555555322334799999998  335568999999887766665555   221     23344444665


Q ss_pred             CCcEEEEeecCC-----------------CCCCCeEEEEEEEEChhhhhhccCCCC-Ccc-cchHH--HHH-hcCceEEE
Q 018327          151 TGKVEKFVEKPK-----------------LFVGNKINAGIYLLNPAVLDRIELRPT-SIE-KEVFP--KIA-LEGKLFAM  208 (358)
Q Consensus       151 ~~~v~~~~ek~~-----------------~~~~~~~~~Giy~~~~~~l~~l~~~~~-~~~-~d~l~--~l~-~~~~v~~~  208 (358)
                       |++..|.+++.                 .+...+.++|+|+|+++.+..+..... .+. .+++.  .++ ...++..+
T Consensus       150 -g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~  228 (262)
T 1vic_A          150 -GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE  228 (262)
T ss_dssp             -SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEE
T ss_pred             -CCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEE
Confidence             89988887642                 223357999999999998876532111 111 11111  234 34579999


Q ss_pred             eec-CeEEecCCHHHHHHHHHHHHH
Q 018327          209 VLP-GFWMDIGQPRDYITGLRLYLD  232 (358)
Q Consensus       209 ~~~-~~~~di~t~~dy~~a~~~~l~  232 (358)
                      ..+ ++|.|++||+||..++..+..
T Consensus       229 ~~~~~~~~dI~tpeDl~~a~~~l~~  253 (262)
T 1vic_A          229 LAKEVPAVGVDTAEDLEKVRAILAA  253 (262)
T ss_dssp             ECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHh
Confidence            888 799999999999999876643

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.89  E-value=5e-23  Score=177.57  Aligned_cols=204  Identities=21%  Similarity=0.352  Sum_probs=132.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.|||||||.|+||+|+    ||+|+|++|+|||+|+++.+..+ +++++|++ +..+++.+++.+   .++..+.++.+
T Consensus        19 ~~~iIlA~G~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~---~~~~~~~~v~~   89 (232)
T 2xme_A           19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK---DKGFNYKIVRH   89 (232)
T ss_dssp             EEEEEEECC------CC----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT---TSCCCEEEEEC
T ss_pred             ceEEEECCcCcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH---hcCCcEEEEEC
Confidence            47999999999999984    99999999999999999999998 99999999 666777777532   23434444444


Q ss_pred             CCc-CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCCCc
Q 018327           81 TEP-LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        81 ~~~-~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~  153 (358)
                      ..+ .|++++++.+++.+  .  +++++++||.+++.+ ++.+++    .. . .++.     .++..++.+..+ + ++
T Consensus        90 ~~~~~g~~~~i~~a~~~~--~--~~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~~~~~~~~~~~~~v~~~-~-g~  157 (232)
T 2xme_A           90 DRPEKGNGYSLLVAKNHV--E--DRFILTMGDHVYSQQFIEKAVR----GE-G-VIADREPRFVDIGEATKIRVE-D-GR  157 (232)
T ss_dssp             SCGGGCHHHHHHTTGGGC--C--SSEEEEETTEEECHHHHHHHTT----CC-E-EEEESSCSSSCTTTSCEEEEE-T-TE
T ss_pred             CCCCCCcHHHHHHHHHHC--C--CCEEEEcCCcccCHHHHHHHHh----CC-C-cEEEccccccCCCcceEEEEc-C-CE
Confidence            433 68999999998887  3  389999999987433 233333    21 2 2222     133456666665 3 89


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHHHHH
Q 018327          154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYITGLR  228 (358)
Q Consensus       154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~a~~  228 (358)
                      +..+.+++.  ..++.++|+|++++++|..+.+.... ...-++.+++.+.+..+..+ ++|.|++||+||.++++
T Consensus       158 v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~-g~~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~  230 (232)
T 2xme_A          158 VAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDR-EEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANR  230 (232)
T ss_dssp             EEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTS-SCCCHHHHHHHHTCBEEECCSCCEEEEECC--------
T ss_pred             EEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhc-ChhHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHh
Confidence            999988764  45678999999999998876532210 01123445544456666654 68999999999988764

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.89  E-value=9.2e-22  Score=171.05  Aligned_cols=214  Identities=20%  Similarity=0.195  Sum_probs=150.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCC-CEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .|||||+|.|+|| |     ||+|+|++|+|||+|+++.+..+++ ++++|++++  +++.+++.++    ++.+....+
T Consensus         4 ~aiIlA~G~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~   71 (245)
T 1h7e_A            4 VIVIPARYGSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF----GGKAIMTRN   71 (245)
T ss_dssp             EEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT----TCEEEECCS
T ss_pred             EEEEEcCCcCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc----CCeEEeCCC
Confidence            5899999999999 4     8999999999999999999999996 999999986  6677776653    566655434


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhc-CCeeEEEe--c------CCCCeeeEEEcC
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAH-GGEASIMV--D------EPSKYGVVVMEE  149 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~-~~~~~~~~--~------~~~~~~~~~~d~  149 (358)
                      ....|++. +..+...+  .. +.+++++||..  ...+++.+++.+.+. +.++++++  .      ++....++ .+.
T Consensus        72 ~~~~g~~~-~~~~~~~~--~~-~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  146 (245)
T 1h7e_A           72 DHESGTDR-LVEVMHKV--EA-DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVV-VNT  146 (245)
T ss_dssp             CCSSHHHH-HHHHHHHS--CC-SEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEE-ECT
T ss_pred             ccCCcHHH-HHHHHHhC--CC-CEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEE-ECC
Confidence            44456644 44555555  33 48999999994  345689999998877 66665554  2      12222222 255


Q ss_pred             CCCcEEEEeecCCC-CC-----CCeEEEEEEEEChhhhhhccCC-CCCc-ccchHHHH---HhcCceEEEeecCeEEecC
Q 018327          150 STGKVEKFVEKPKL-FV-----GNKINAGIYLLNPAVLDRIELR-PTSI-EKEVFPKI---ALEGKLFAMVLPGFWMDIG  218 (358)
Q Consensus       150 ~~~~v~~~~ek~~~-~~-----~~~~~~Giy~~~~~~l~~l~~~-~~~~-~~d~l~~l---~~~~~v~~~~~~~~~~di~  218 (358)
                      + +++..|.+++.. .+     +.+.++|+|+|+++.+..+... ...+ ..|.++.+   ....++..+..++.|.|++
T Consensus       147 ~-g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dId  225 (245)
T 1h7e_A          147 R-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVD  225 (245)
T ss_dssp             T-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSS
T ss_pred             C-CcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCC
Confidence            4 889988876532 12     2568999999999987654311 1111 12334333   2345799999889999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 018327          219 QPRDYITGLRLYLDS  233 (358)
Q Consensus       219 t~~dy~~a~~~~l~~  233 (358)
                      ||+||..++..+..+
T Consensus       226 tp~Dl~~a~~~l~~~  240 (245)
T 1h7e_A          226 TPACLEKVRALMAQE  240 (245)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999998766543

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.84  E-value=2.8e-20  Score=159.84  Aligned_cols=200  Identities=12%  Similarity=0.131  Sum_probs=137.8

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc-
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE-   80 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~-   80 (358)
                      |||||||.|+||+      ||+|+|++|+|||+|+++.+.+++ +++++|+++.  +++.+++.+    +++.+..... 
T Consensus         7 aiIlA~G~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~----~~~~~~~~~~~   74 (228)
T 1ezi_A            7 AVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN----FGVEVVLRPAE   74 (228)
T ss_dssp             EEEECCSSCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH----TTCEEEECCC-
T ss_pred             EEEecCCCCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH----cCCEEEeCchH
Confidence            9999999999997      799999999999999999999998 7999999974  556666654    3555522211 


Q ss_pred             --CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCc
Q 018327           81 --TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        81 --~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~  153 (358)
                        ....|+.++++.+++.+.. ..+.+++++||..  ...+++.+++.+.+.+.++++.+   .+. .++....|++ |+
T Consensus        75 ~~~~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~-g~  151 (228)
T 1ezi_A           75 LASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHH-PLKTLLQINN-GE  151 (228)
T ss_dssp             -----CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSC-TTSCEEECC---C
T ss_pred             HcCCCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCC-cceeeEEcCC-Cc
Confidence              1345678899999988832 2348999999983  34568888888766665666655   331 1333334654 88


Q ss_pred             EEEEee-c---CC--CC-CCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHH
Q 018327          154 VEKFVE-K---PK--LF-VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYIT  225 (358)
Q Consensus       154 v~~~~e-k---~~--~~-~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~  225 (358)
                      +..+.+ +   +.  .. .....++|+|+++++.+....        .+     ...++..+..+ ..|.|++||+||..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~--------~~-----~g~~v~~~~~~~~~~~dIdtpeDl~~  218 (228)
T 1ezi_A          152 YAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANN--------CF-----FIAPTKLYIMSHQDSIDIDTELDLQQ  218 (228)
T ss_dssp             EEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHT--------SS-----CCSSCEEEECCTGGGCCCCSHHHHHH
T ss_pred             EeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCC--------cc-----cCCceEEEEeCcccccCCCCHHHHHH
Confidence            888866 2   11  11 112467899999988765421        00     13456666665 58999999999998


Q ss_pred             HHHHH
Q 018327          226 GLRLY  230 (358)
Q Consensus       226 a~~~~  230 (358)
                      +...+
T Consensus       219 a~~~l  223 (228)
T 1ezi_A          219 AENIL  223 (228)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.84  E-value=4.5e-22  Score=183.13  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             cEEEEeCCeeecc--CHHHHHHHHHhcCCeeEEEe-cCCCCeeeEEEcCC-CCcEEEEeecCCCCCC-CeEEEEEEEECh
Q 018327          104 PFFVLNSDVISEY--PFAEMIEFHKAHGGEASIMV-DEPSKYGVVVMEES-TGKVEKFVEKPKLFVG-NKINAGIYLLNP  178 (358)
Q Consensus       104 ~~lv~~gD~i~~~--~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~-~~~v~~~~ek~~~~~~-~~~~~Giy~~~~  178 (358)
                      .=|+-.+|.++.+  +|.+++++|.     +++.. +++..+|+..+|+. .+++ .|.|||+.... .+.++|+|+|++
T Consensus        12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~~   85 (374)
T 2iu8_A           12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQGNGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIISR   85 (374)
T ss_dssp             ---------CCSCCEEHHHHHHHTT-----CEEESCTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEEH
T ss_pred             cCcccCccccccCcCcHHHHHHhhC-----CEEECCCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeCh
Confidence            3466788999987  8999999885     35555 67778888888753 2566 99999984322 457899999999


Q ss_pred             hhhhh
Q 018327          179 AVLDR  183 (358)
Q Consensus       179 ~~l~~  183 (358)
                      ++++.
T Consensus        86 ~~l~~   90 (374)
T 2iu8_A           86 TQFQK   90 (374)
T ss_dssp             HHHHT
T ss_pred             hHhhh
Confidence            98763

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.83  E-value=7.9e-20  Score=158.76  Aligned_cols=218  Identities=14%  Similarity=0.129  Sum_probs=142.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChH-HHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .|||||||.|+||++  ..+||+|+|++|+|||+|+++.+.+++ +++|+|++++... .+.+.+.++.....+.  +..
T Consensus         5 ~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~--~~~   80 (246)
T 3f1c_A            5 YAQILAGGKGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIV--VIE   80 (246)
T ss_dssp             EEEEECC-----C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEE--EEE
T ss_pred             EEEEECCccccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEE--EEC
Confidence            599999999999987  468999999999999999999999998 9999999997543 3445555432111222  222


Q ss_pred             cCCcCCCchHHHHHHhhccC----CCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe-cCCCCeeeEEEcCCCC
Q 018327           80 ETEPLGTAGPLALARDKLID----DTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV-DEPSKYGVVVMEESTG  152 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~----~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~  152 (358)
                        .+.+..++++.+++.+..    ...+.++++.||.  +....++++++.+.+.++..+++. .+    .++..+++ +
T Consensus        81 --~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d----~i~~~~~~-~  153 (246)
T 3f1c_A           81 --GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALD----TIVESSNH-E  153 (246)
T ss_dssp             --CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSS----CEEECSSS-S
T ss_pred             --CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccc----eEEEecCC-C
Confidence              234667899999888853    1234899999998  445569999999988764444332 32    34444443 5


Q ss_pred             cEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCC----CCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHH
Q 018327          153 KVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP----TSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       153 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~----~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      .+..+.+++.-    +..-..++|+.+.+.......    ..+..|....+...+ ++..+..+..|.+++||+||..++
T Consensus       154 ~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae  229 (246)
T 3f1c_A          154 VITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVAN  229 (246)
T ss_dssp             BCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHH
T ss_pred             eEEEecChHHh----hhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHH
Confidence            66655555331    122245788876655332211    122345555555544 588888888999999999999998


Q ss_pred             HHHHHhh
Q 018327          228 RLYLDSL  234 (358)
Q Consensus       228 ~~~l~~~  234 (358)
                      ..+..+.
T Consensus       230 ~~l~~~~  236 (246)
T 3f1c_A          230 AIIQERI  236 (246)
T ss_dssp             HHHHHHC
T ss_pred             HHHhccc
Confidence            7765443

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.83  E-value=2.9e-20  Score=160.53  Aligned_cols=215  Identities=13%  Similarity=0.140  Sum_probs=133.1

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEe
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~   78 (358)
                      |.+||||||.|+||++  ..+||+|+|++|+|||+|+++.+.+++ +++++|++++.. +.+.+++.++.-........ 
T Consensus         3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIII-   79 (236)
T ss_dssp             EEEEEEEC-------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEE-
T ss_pred             eEEEEeCCccccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEE-
Confidence            4799999999999987  678999999999999999999999984 999999999875 55666666542001001111 


Q ss_pred             ccCCcCCCchHHHHHHhhccC--C--CCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCC
Q 018327           79 QETEPLGTAGPLALARDKLID--D--TGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEES  150 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~--~--~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~  150 (358)
                       .....|..+++..+++.+..  .  ..+.+++++||. + ...+++.+++.|.+.+. ..+++  .++     +..+++
T Consensus        80 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~~~~-----~~~~~~  152 (236)
T 2vsh_A           80 -TKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA-VDTVVEAVDT-----IVESTN  152 (236)
T ss_dssp             -EECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE-EEEEEECCSC-----EEECSS
T ss_pred             -ECCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc-EEEEEecccc-----EEEeCC
Confidence             12235678889988887731  1  223789999999 3 44568999999877643 22232  322     122343


Q ss_pred             CC-cEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCC---Cc-ccchHHHHHhc-CceEEEeecCeEEecCCHHHHH
Q 018327          151 TG-KVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPT---SI-EKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYI  224 (358)
Q Consensus       151 ~~-~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~---~~-~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~  224 (358)
                       | ++..+.+++..    ......|+|+++.+..+.+...   .. ..+.+..+... .++..+..+++|.|++||+||.
T Consensus       153 -g~~~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~  227 (236)
T 2vsh_A          153 -GQFITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLK  227 (236)
T ss_dssp             -SSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHH
T ss_pred             -CCeeeeecChHHh----eeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHH
Confidence             7 77777665421    1113478899887764322111   01 12333444443 3587888778999999999999


Q ss_pred             HHHHHH
Q 018327          225 TGLRLY  230 (358)
Q Consensus       225 ~a~~~~  230 (358)
                      +++..+
T Consensus       228 ~a~~~~  233 (236)
T 2vsh_A          228 IAKSMI  233 (236)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            887543

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.82  E-value=4.3e-19  Score=151.89  Aligned_cols=208  Identities=18%  Similarity=0.179  Sum_probs=139.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChH-HHHHHHHhhhhccCcEEEEe
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~   78 (358)
                      |.+||||||.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++++|++++... .+.+++.    ..++.  +.
T Consensus         3 ~~~vIlA~G~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~----~~~v~--~~   73 (223)
T 2xwl_A            3 TVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG----GEDSV--IV   73 (223)
T ss_dssp             EEEEEECCCCCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC----BTTEE--EE
T ss_pred             eEEEEECCccCcccCC---CCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc----cCCeE--EE
Confidence            3699999999999983   67999999999999999999999988 9999999998643 3443332    11333  23


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCc
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~  153 (358)
                      ..  ..+.++++..+++.++  ..+.++++.||. + ...+++.+++.+. .+.++++.+   .++..  +  .|++ |+
T Consensus        74 ~~--~~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~--~--~~~~-g~  143 (223)
T 2xwl_A           74 SG--GVDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPADTIK--A--VDAN-GA  143 (223)
T ss_dssp             EC--CSSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEE--E--ECTT-SB
T ss_pred             cC--CCCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecccceE--E--EcCC-Cc
Confidence            22  2356788999988772  334788999998 3 3446899999873 223444433   33222  2  3554 88


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCC-CCcccchHHHHHhc-CceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-TSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      +..+.+++.-    ......|+|+++.+..+.... ..+..+....+... .++..+..++.|.|++||+||.++...+.
T Consensus       144 ~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~  219 (223)
T 2xwl_A          144 VLGTPERAGL----RAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLA  219 (223)
T ss_dssp             EEECCCGGGE----EEECSCEEEEHHHHHHHHTTCCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHH
T ss_pred             EEeecChHHh----eeeeCCcccCHHHHHHHHHHhhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHh
Confidence            8888776421    111234788887666543322 22233444444333 45777888889999999999999976543

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.81  E-value=1.2e-20  Score=162.50  Aligned_cols=191  Identities=17%  Similarity=0.204  Sum_probs=132.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |++||||||. +||++.+...||+|+|++|+|||+|+++.+..++. +++|++..  +++.+++       ++.+     
T Consensus         3 ~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------~~~~-----   66 (232)
T 2dpw_A            3 PSAIVLAGGK-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------ALTL-----   66 (232)
T ss_dssp             CEEEEECCCB-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC-------SEEE-----
T ss_pred             eeEEEECCCC-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc-------CeEe-----
Confidence            5799999999 66655544589999999999999999999999998 88887553  3332222       3433     


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEEcCCCCcE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEP-SKYGVVVMEESTGKV  154 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~v  154 (358)
                      ..+.|++++++.+++.+  .  +++++++||.  +....++.+++ + +.+.++++.+   +++ ..|+.+    . .++
T Consensus        67 ~~~~g~~~~i~~a~~~~--~--~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~----~-~~v  135 (232)
T 2dpw_A           67 PDRGGLLENLEQALEHV--E--GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRT----K-RTY  135 (232)
T ss_dssp             CCCSSHHHHHHHHHHTC--C--SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTC----C-CCC
T ss_pred             cCCCCHHHHHHHHHHHc--C--CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCc----c-eeE
Confidence            45679999999999888  3  3999999999  45556888888 6 4445555543   111 223221    1 456


Q ss_pred             EEEeecCCCCCCCeEEEEEEEEChhhhhhccCC----------------------------CCCcccchHHHHHh--cCc
Q 018327          155 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR----------------------------PTSIEKEVFPKIAL--EGK  204 (358)
Q Consensus       155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~----------------------------~~~~~~d~l~~l~~--~~~  204 (358)
                      ..+.|||      ..++|+|+|+++.+..+...                            ......++++.+..  ..+
T Consensus       136 ~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~  209 (232)
T 2dpw_A          136 ARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVE  209 (232)
T ss_dssp             EEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSC
T ss_pred             EEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcE
Confidence            6676664      38899999999988765320                            11222455555543  246


Q ss_pred             eEEEee--cCeEEecCCHHHHH
Q 018327          205 LFAMVL--PGFWMDIGQPRDYI  224 (358)
Q Consensus       205 v~~~~~--~~~~~di~t~~dy~  224 (358)
                      +..+..  ++.|.|+|||+||.
T Consensus       210 v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          210 ARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             EEEEECSCGGGTCCCCSHHHHC
T ss_pred             EEEEecCChhhccCCCChhhcc
Confidence            777776  45799999999984

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.81  E-value=3.1e-19  Score=153.32  Aligned_cols=210  Identities=12%  Similarity=0.173  Sum_probs=132.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .|||||||.|+||+.   ..||+|+|++|+|||+|+++.+.++ ++++++|++++..+++.+++..   .++..+.+.. 
T Consensus         6 ~aiIlAaG~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~~~v~~~~-   78 (228)
T 2yc3_A            6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE---SIDVDLSFAI-   78 (228)
T ss_dssp             EEEEECCCCC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT---TSSSEEEEEC-
T ss_pred             EEEEECCccccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH---hCCCcEEEEC-
Confidence            699999999999973   5799999999999999999999998 7999999999876656554432   3344554443 


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe-cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV-DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~v~~~  157 (358)
                       ...|..++++.+++.+.. ..+.++++.||.  +...+++.+++.+.+.+.  ++++ ....  .+...+++ +.+..+
T Consensus        79 -~~~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~--~~~~~~~~-~~v~~~  151 (228)
T 2yc3_A           79 -PGKERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAKA--TIKEVNSD-SLVVKT  151 (228)
T ss_dssp             -CCSSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECCS--CCCCBCTT-SCBCCC
T ss_pred             -CCCCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEeccc--eEEEEcCC-CceEEe
Confidence             235778999999988843 233788999997  344568999998876543  3322 1111  12222432 444433


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhh-cc---CCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDR-IE---LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~-l~---~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      .+++    ........|+|+++.+.. +.   ... .+..+.+..+.+.+ ++..+..+..|.+++||+||..++..+
T Consensus       152 ~~~~----~~~~~~~~~~f~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l  224 (228)
T 2yc3_A          152 LDRK----TLWEMQTPQVIKPELLKKGFELVKSEG-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL  224 (228)
T ss_dssp             CSCC----CCEEEEEEEEECHHHHHHHHHHHHHHT-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             cCcc----ceEEEeCCcEEEHHHHHHHHHHHHhcC-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence            2221    112233489999865543 21   111 12245555555444 465545556799999999999987644

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.80  E-value=7.3e-19  Score=151.04  Aligned_cols=199  Identities=13%  Similarity=0.100  Sum_probs=131.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .|||||+|.|+||+      +|+|+|++|+|||+|+++.+.+++ +++|+|++.  .+++.+++.+    +++.+.....
T Consensus         5 ~aiIlA~G~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~----~g~~~~~~~~   72 (229)
T 1qwj_A            5 AALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ----FGAQVHRRSS   72 (229)
T ss_dssp             EEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH----TTCEEEECCG
T ss_pred             EEEEEcCCCCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH----cCCEEEeChh
Confidence            58999999999994      499999999999999999999998 699999884  3667776654    3666643321


Q ss_pred             ---CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCC
Q 018327           81 ---TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTG  152 (358)
Q Consensus        81 ---~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~  152 (358)
                         ....+..+++..+++.+.  ..+.+++++||..  ...+++.+++.+.+.+.+.++.+   .+|..+++  .| . .
T Consensus        73 ~~~~~~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v--~~-~-~  146 (229)
T 1qwj_A           73 ETSKDSSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEI--QK-G-V  146 (229)
T ss_dssp             GGSSTTCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCC--CS-S-T
T ss_pred             hhcCCCCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhc--cc-c-c
Confidence               122233478888888773  3348999999983  34568999999887766544433   33433332  12 1 1


Q ss_pred             c-EEE--Eeec----CCC--CCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHH
Q 018327          153 K-VEK--FVEK----PKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRD  222 (358)
Q Consensus       153 ~-v~~--~~ek----~~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~d  222 (358)
                      . +..  +.++    +..  +.....++|+|+++++.|  +            +.+.....+..+..+ ++|.|+|||+|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~------------~~~~~g~~~~~~~~~~~~~~dIdt~~D  212 (229)
T 1qwj_A          147 REVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--E------------MGYLQGGKMAYYEMRAEHSVDIDVDID  212 (229)
T ss_dssp             TCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--H------------TTCSSCSSEEEEECCGGGCCCHHHHCS
T ss_pred             cccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--c------------cccccCCeEEEEECCcccccCCCCHHH
Confidence            1 111  1111    111  122357999999999887  1            111122234321544 68999999999


Q ss_pred             HHHHHHHHHH
Q 018327          223 YITGLRLYLD  232 (358)
Q Consensus       223 y~~a~~~~l~  232 (358)
                      |..++..+..
T Consensus       213 l~~a~~~~~~  222 (229)
T 1qwj_A          213 WPIAEQRVLR  222 (229)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876543

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.79  E-value=8.2e-19  Score=147.05  Aligned_cols=183  Identities=22%  Similarity=0.267  Sum_probs=117.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||++    .||+|+|++|+|||+|+++.+.++++++++|++++..+++.+++.+... +...+.++ .
T Consensus         1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~-~~~~~~~~-~   74 (196)
T 3rsb_A            1 MDALIMAGGKGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYK-DYKNIVVI-D   74 (196)
T ss_dssp             CEEEEEC----CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTT-TTTEEEE---
T ss_pred             CEEEEECCCCCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhcc-CCCCEEEE-E
Confidence            8999999999999987    7999999999999999999999999999999999887888888876211 11133333 3


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHh-----cCCeeEEEecCCCCeeeEEEcCCCCc
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKA-----HGGEASIMVDEPSKYGVVVMEESTGK  153 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~  153 (358)
                      ....|++++++.+++.+    .+.+++++||.  +....++++++.+.+     .+.+..+++        +.. .. +.
T Consensus        75 ~~~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~--------~p~-~~-~~  140 (196)
T 3rsb_A           75 TSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVM--------IPK-EK-YP  140 (196)
T ss_dssp             ------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEE--------EET-TT-CC
T ss_pred             CCCCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEE--------EEc-cc-cC
Confidence            34678888888888776    24999999999  345569999999876     444333332        000 00 11


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                           ..|..+. .+..+++..++.+.                    .......+.+++...|+|||+||..+...
T Consensus       141 -----~~~~~~~-~~~~~~l~~l~~~~--------------------~~~~~~~~~~~~~~~DIDt~eDl~~ae~l  190 (196)
T 3rsb_A          141 -----NPSIDFN-GLVPADINVVSPKH--------------------GYQKEEIMVIDELIFNINTKDDLKLAEML  190 (196)
T ss_dssp             -----SCSCCSS-SEEEEEEEEECSCS--------------------SCCCEEEEECSSCCEECCSHHHHHHHHHC
T ss_pred             -----CCCeeec-cccceeeEEecCCC--------------------CcceeEEEEecceEEecCCHHHHHHHHHH
Confidence                 1111122 24445666665543                    01122233334668999999999988654

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.79  E-value=2.3e-18  Score=148.18  Aligned_cols=211  Identities=16%  Similarity=0.134  Sum_probs=125.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |.+||||||.|+||++   ..||+|+|++|+|||+|+++.+..++ +++++|++++..+.+.+ +.++. ...  +.+. 
T Consensus         7 ~~aiIlA~G~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~-~~~--i~~~-   78 (231)
T 1vgw_A            7 NIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF-PQV--RVWK-   78 (231)
T ss_dssp             EEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC-TTS--EEEC-
T ss_pred             eEEEEEcccccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC-CCc--eEEE-
Confidence            4699999999999997   68999999999999999999999986 99999999886555655 54321 112  2222 


Q ss_pred             cCCcCCCchHHHHHHhhccCC----CCCcEEEEeCCe-ee-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCc
Q 018327           80 ETEPLGTAGPLALARDKLIDD----TGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGK  153 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~----~~~~~lv~~gD~-i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  153 (358)
                       ....|+++++..+++.+...    ..+.+++++||. +. ...++.+++.+.+.+..+.+++.....  ... +++ |+
T Consensus        79 -~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~-g~  153 (231)
T 1vgw_A           79 -NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVADT--LKR-AES-GQ  153 (231)
T ss_dssp             -CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECCSC--EEE-ESS-SB
T ss_pred             -cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEEeecccc--eEE-eCC-Cc
Confidence             34568889999988877320    234899999998 33 345889998886554223222211111  111 233 55


Q ss_pred             EEEEeecCCCCCCCe-EEEEEEEEChhhhhhccCCCCC-cccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          154 VEKFVEKPKLFVGNK-INAGIYLLNPAVLDRIELRPTS-IEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       154 v~~~~ek~~~~~~~~-~~~Giy~~~~~~l~~l~~~~~~-~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      +....++     ..+ .....|+|+++.+..+...... -..+....+.. ..++..+..++.|.|++||+||..+...
T Consensus       154 i~~~~~~-----~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~  227 (231)
T 1vgw_A          154 ISATVDR-----SGLWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL  227 (231)
T ss_dssp             EEEEECC-----TTEEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             eEecCCh-----HHheeeeCCcEecHHHHHHHHHHHhhcCCCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHH
Confidence            5433322     222 2234889998877644221100 01122222222 2457777777789999999999988653

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.78  E-value=9e-18  Score=140.95  Aligned_cols=184  Identities=14%  Similarity=0.200  Sum_probs=128.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||.|+||+     .||+|+|++|+|||+|+++.+..+++++++|++++..+++.+++.+    .++.+... +.
T Consensus         7 ~~iIlA~G~~~R~g-----~~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~   76 (199)
T 2waw_A            7 TGVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL----DGLDIVLV-DD   76 (199)
T ss_dssp             EEEEEESSCCTTTT-----SCGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-CC
T ss_pred             EEEEECCCCCCCCC-----CCEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CC
Confidence            58999999999995     5899999999999999999999999999999999876666655543    35666443 33


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEee
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      ...|++++++.+++.+.. ..+.+++++||..+  ...++.+++.  +.+.+.++.          ..+   ++-     
T Consensus        77 ~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~----------~~~---g~~-----  135 (199)
T 2waw_A           77 AGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVC----------EYA---NGI-----  135 (199)
T ss_dssp             CCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEE----------EET---TEE-----
T ss_pred             cccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEE----------ecC---Ccc-----
Confidence            446889999999988842 23489999999953  4558888876  333322221          011   210     


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhc--CceEEEee-cCeEEecCCHHHHHHHHHHH
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~--~~v~~~~~-~~~~~di~t~~dy~~a~~~~  230 (358)
                                 ..-++|+++.+..+.....+.  . ...++..  .++..+.. ++.|.|+|||+||.++...+
T Consensus       136 -----------~~P~~~~~~~l~~~~~~~~~~--~-~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~  195 (199)
T 2waw_A          136 -----------GHPFWVSRGVFGDLAELHGDK--G-VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV  195 (199)
T ss_dssp             -----------EEEEEEEGGGHHHHHTCSSTT--C-HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred             -----------cCCEEEcHHHHHHHHhcCCCH--H-HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence                       112578888887665322111  1 3334433  34666665 45899999999999887654

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.77  E-value=5.1e-19  Score=152.94  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=104.0

Q ss_pred             CceEEEeecCe----EEecCCHHHHHHHHHHHHHhhcccC---------------cccccCCcEEecceEECCCCEECCC
Q 018327          203 GKLFAMVLPGF----WMDIGQPRDYITGLRLYLDSLRKKS---------------SLKLATGANIVGNVLVHESAQIGEG  263 (358)
Q Consensus       203 ~~v~~~~~~~~----~~di~t~~dy~~a~~~~l~~~~~~~---------------~~~~~~~~~i~~~~~i~~~~~i~~~  263 (358)
                      .+++.+...++    |.|+++   |+++++.+++......               ...+.+++.+.+++.|++++.|+++
T Consensus        39 ~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~  115 (240)
T 3r8y_A           39 VQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMN  115 (240)
T ss_dssp             SEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTT
T ss_pred             ceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCC
Confidence            34555555444    777766   8888877765433321               1345677777788888888888888


Q ss_pred             cEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCEECCccEEcCccEECCCcEECCc
Q 018327          264 CLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGEDVHVCDE  333 (358)
Q Consensus       264 ~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~  333 (358)
                      ++|+.++.||++|.|+.+|.|. +++||++|.|++++.+.+         ++|+++|+||.++.|.+++.||++++|+++
T Consensus       116 s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~g  195 (240)
T 3r8y_A          116 ATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAG  195 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCC
Confidence            8887788888888888888887 889999999999999977         889999999999999888999999999999


Q ss_pred             eEEcCc
Q 018327          334 IYSNGG  339 (358)
Q Consensus       334 ~~i~~~  339 (358)
                      +.+.+.
T Consensus       196 svV~~~  201 (240)
T 3r8y_A          196 AVVTED  201 (240)
T ss_dssp             CEECSC
T ss_pred             CEECCC
Confidence            888653

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.76  E-value=1.5e-17  Score=143.42  Aligned_cols=209  Identities=11%  Similarity=0.062  Sum_probs=129.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHH-HHHHHhhhhccCcEEEEe
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVM-LNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i-~~~l~~~~~~~~~~i~~~   78 (358)
                      |.|||||||.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++++|++++...+. .+++.     ++..+.. 
T Consensus        14 ~~aiILAaG~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~~-   84 (234)
T 1vpa_A           14 NVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLGI-   84 (234)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEEE-
T ss_pred             CeEEEEcCcchhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceEE-
Confidence            5799999999999974   57999999999999999999999998 999999999764432 32221     1222221 


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~  156 (358)
                       .....+..++++.+++.+.....+.+++++||. +. ...++.+++.+.+.+... +++....  ++...+++ | + .
T Consensus        85 -~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~i-~~~~~~~--~~~~~~~~-g-v-~  157 (234)
T 1vpa_A           85 -VEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAAT-LALKNSD--ALVRVEND-R-I-E  157 (234)
T ss_dssp             -EECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEE-EEEECCS--EEEEEETT-E-E-E
T ss_pred             -eCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEE-EEEecCC--cEEEECCC-C-c-c
Confidence             122234667888888877421223678888998 33 445889998876643222 1221111  12233444 6 5 5


Q ss_pred             EeecCCCCCCCeE-EEEEEEEChhhhhhccCCCCCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKI-NAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       157 ~~ek~~~~~~~~~-~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      +.++     +.+. .-..++|+++.+..+..... ...+....+.. ..++..+..++.|.|+|||+||..+...+.
T Consensus       158 ~~~r-----~~~~~~~~p~~f~~~~l~~~~~~~~-~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~  228 (234)
T 1vpa_A          158 YIPR-----KGVYRILTPQAFSYEILKKAHENGG-EWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR  228 (234)
T ss_dssp             EECC-----TTEEEEEEEEEEEHHHHHHHHTTCC-CCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred             cCCh-----hHeeeecCCccccHHHHHHHHHhcC-CCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence            5442     1111 11334788777665433211 11222222222 234666666678999999999999876543

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.76  E-value=1.6e-17  Score=139.21  Aligned_cols=182  Identities=14%  Similarity=0.207  Sum_probs=123.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||.|+||+     .||+|+|++|+|||+|+++.+..+++++++|++++..+++.+++.+    +++.+... +.
T Consensus         7 ~~iIlA~G~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~~   76 (197)
T 2wee_A            7 TGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----DGTDVVVV-ED   76 (197)
T ss_dssp             EEEEEECCCCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC----TTSEEEEC-C-
T ss_pred             EEEEECCCCcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc----CCCEEEEC-CC
Confidence            59999999999994     6999999999999999999999999999999999876666665543    35665442 22


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEee
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      ...|++++++.+++.+.. ..+.+++++||.. . ...++.+++.  +.+...++.          ..|   ++.     
T Consensus        77 ~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~----------~~~---g~~-----  135 (197)
T 2wee_A           77 VERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVC----------RYA---DGV-----  135 (197)
T ss_dssp             ---CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEE----------EET---TEE-----
T ss_pred             cccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEE----------ecC---CCc-----
Confidence            346899999999988732 2248999999993 3 4457888876  332222111          011   210     


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhc--CceEEEee-cCeEEecCCHHHHHHHHH
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRDYITGLR  228 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~--~~v~~~~~-~~~~~di~t~~dy~~a~~  228 (358)
                                 ..-++|+++.+..+....   ...-+..+++.  ..+..+.. ++.|.|++||+||.++..
T Consensus       136 -----------~~P~~~~~~~l~~l~~~~---~~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~  193 (197)
T 2wee_A          136 -----------GHPFWFSRTVFGELARLH---GDKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLE  193 (197)
T ss_dssp             -----------EEEEEEEGGGHHHHHTCC---STTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred             -----------CCCEEECHHHHHHHHhCC---CChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHH
Confidence                       011478888887765221   11223344444  34666665 468999999999988753

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.76  E-value=6.9e-17  Score=151.51  Aligned_cols=176  Identities=19%  Similarity=0.281  Sum_probs=130.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHHC----CCC-EEEEEec-cChHHHHHHHHhhhhccCcE
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GVT-EVVLAIN-YQPEVMLNFLKEFEAKLGIK   74 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~~----gi~-~i~vv~~-~~~~~i~~~l~~~~~~~~~~   74 (358)
                      .+||||||.|+||+.   ..||.|+|++ |+||++++++.+...    |.. .++++++ +..+.+++++++. ..+++.
T Consensus        94 avViLAGG~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~~fg~~  169 (488)
T 2i5k_A           94 AVLKLNGGLGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-SANRIR  169 (488)
T ss_dssp             EEEEECCCBSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-CSSSCE
T ss_pred             eEEEEcCCCcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-cccCce
Confidence            479999999999985   8999999998 999999999999877    533 3666666 6788999999873 455777


Q ss_pred             EEEeccC------------------------CcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeec-cCHHHHHHH
Q 018327           75 IICSQET------------------------EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISE-YPFAEMIEF  124 (358)
Q Consensus        75 i~~~~~~------------------------~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~-~~l~~~~~~  124 (358)
                      +.+..|.                        .+.|+++++...     ++.+.....++++|++||.+.. .++. ++..
T Consensus       170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~L~~  248 (488)
T 2i5k_A          170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-ILNH  248 (488)
T ss_dssp             EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-HHHH
T ss_pred             EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-HHHH
Confidence            7766554                        678999988733     3444222334999999999665 4675 6688


Q ss_pred             HHhcCCeeEEEe---cCCC-CeeeEEEcCCCCc--EEEEeecCCC--------CCCCeEEEEEEEEChhhhhhc
Q 018327          125 HKAHGGEASIMV---DEPS-KYGVVVMEESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  184 (358)
Q Consensus       125 ~~~~~~~~~~~~---~~~~-~~~~~~~d~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l  184 (358)
                      |.+++.++++.+   .++. .||.+..++  |+  +.++.+.|..        ..-...++|+|+|+.+.++.+
T Consensus       249 ~~~~~a~~t~~v~~~~~p~~~yG~Iv~~d--G~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~  320 (488)
T 2i5k_A          249 MIETGAEYIMELTDKTRADVKGGTLISYD--GQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL  320 (488)
T ss_dssp             HHHSCCSEEEEEEECCGGGSSSCEEEEET--TEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred             HHhcCCcEEEEEEEecCCCCceeEEEEEC--CcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence            888888888877   4565 499887653  55  4444444442        123578999999998888755

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.73  E-value=6e-18  Score=158.63  Aligned_cols=255  Identities=14%  Similarity=0.151  Sum_probs=167.9

Q ss_pred             cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe----CCeeeccCHHHHHHHHHhc--C---------CeeEEE
Q 018327           71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN----SDVISEYPFAEMIEFHKAH--G---------GEASIM  135 (358)
Q Consensus        71 ~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~----gD~i~~~~l~~~~~~~~~~--~---------~~~~~~  135 (358)
                      ++..+.+.....+.+++.+++.+.+.+    . .++|+.    +|.....++.+++..|.++  +         ...++.
T Consensus       111 ~g~~vt~~~~~~pL~~a~~i~~~d~~~----~-~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~  185 (496)
T 3c8v_A          111 KGQHFVCDGKMIPLHDDEVITIKDSFL----N-KTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVD  185 (496)
T ss_dssp             TTCEEEETTEEEECSSCCEEEEESCEE----E-SCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEE
T ss_pred             cCCEEEEEecccchhHhhhHHhhhhcC----C-ceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceee
Confidence            456677766677778877643332222    0 226777    4776656666666666642  1         122333


Q ss_pred             e---cCC--CCeeeEEEcCCCCcEEEEeecCCCC--CCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEE
Q 018327          136 V---DEP--SKYGVVVMEESTGKVEKFVEKPKLF--VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAM  208 (358)
Q Consensus       136 ~---~~~--~~~~~~~~d~~~~~v~~~~ek~~~~--~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~  208 (358)
                      +   .++  +.++.+.    ++++..+.++|...  .++.....+|.|.++.++.+.....            ...    
T Consensus       186 L~~l~d~li~~~~~~~----~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~------------~~n----  245 (496)
T 3c8v_A          186 LSTIHNSVVRYFSYVQ----TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEA------------GSC----  245 (496)
T ss_dssp             SCEEESCEECTTCEEE----SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCT------------TSC----
T ss_pred             HHHHHHHHHHHHhhhc----CCceEEeeecCCceecccccccceEEEcCHHHHHHHHhhcc------------Ccc----
Confidence            2   444  4555442    26777766776521  2223345699999888876421100            000    


Q ss_pred             eecCeEEec--CCHHHHHHHHHHHHHhh--cccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEE
Q 018327          209 VLPGFWMDI--GQPRDYITGLRLYLDSL--RKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  284 (358)
Q Consensus       209 ~~~~~~~di--~t~~dy~~a~~~~l~~~--~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i  284 (358)
                       ..+.|.|+  ..++++.+.........  .-.....+.+.+.+.+++.||+++.|++++.| .+++||++|.|+++|.|
T Consensus       246 -~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I  323 (496)
T 3c8v_A          246 -PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYI  323 (496)
T ss_dssp             -CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCEE
T ss_pred             -ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCceE
Confidence             11223332  23455544321111000  00123445677777788889999999999999 68999999999999999


Q ss_pred             eeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc----cEECCCcEECCceEEc---CcEEccCceeccCCC
Q 018327          285 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYSN---GGVVLPHKEIKSSIL  352 (358)
Q Consensus       285 ~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~---~~~v~~~~~i~~~~~  352 (358)
                      .+++||++|.|++++.|.+++||++|+||+++.|.++    ++||++|+||+++.+.   +..+.|++.+.+.+.
T Consensus       324 ~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~v~  398 (496)
T 3c8v_A          324 INSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYIR  398 (496)
T ss_dssp             EEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSEES
T ss_pred             eceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEEec
Confidence            9999999999999999999999999999999999998    8999999999999998   677788877775543

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.73  E-value=2.9e-17  Score=141.70  Aligned_cols=213  Identities=14%  Similarity=0.099  Sum_probs=130.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |.+||||||.|+||+.   ..||+|+|++|+|||+|+++.+..++ +++++|++++..+.+.+ +..+. ...+.  +..
T Consensus         8 ~~~iIlA~G~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~-~~~v~--~~~   80 (236)
T 1i52_A            8 VCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLAN-HPQIT--VVD   80 (236)
T ss_dssp             EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGG-CTTEE--EEE
T ss_pred             eeEEEECCcCccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcC-CCCEE--EEC
Confidence            3689999999999973   57999999999999999999999887 89999999975444444 33221 01222  222


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  157 (358)
                        ...|..+++..+++.+.  ..+.+++++||.. .. ..++.+++.+.+.+....+++.....  +...+++++++...
T Consensus        81 --~~~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~  154 (236)
T 1i52_A           81 --GGDERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDT--MKRAEPGKNAIAHT  154 (236)
T ss_dssp             --CCSSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSC--EEEECTTSSSEEEE
T ss_pred             --CCCCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEEEecccc--EEEEcCCCCceeec
Confidence              22477889999988873  2348999999983 33 34788888766543222222211111  11123321344433


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhcc----CCCCCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIE----LRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~----~~~~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~l  231 (358)
                      .+    ...-+..-+.++|+.+.+..+.    +....+ .+....+.. ..++..+..++.|.|++||+||..+...+.
T Consensus       155 ~~----~~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~  228 (236)
T 1i52_A          155 VD----RNGLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLT  228 (236)
T ss_dssp             EC----CTTCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHC
T ss_pred             cC----hHhheeeeCCceecHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHH
Confidence            21    1122222256677776554321    111111 122222222 345777777778999999999999977654

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.73  E-value=9e-17  Score=134.07  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCc---
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQW---  315 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~---  315 (358)
                      .+++++.+.+++.|++++.|+++++|++++.||++|.|++++.|. ++.||++|.|++++.|.+ +.|++++.||++   
T Consensus         5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~   84 (192)
T 3mqg_A            5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVF   84 (192)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBC
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEE
Confidence            466777777888888888888888888888888888888888888 588888888888888865 678888888765   


Q ss_pred             ------------------cEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          316 ------------------ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       316 ------------------~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                                        +.|+++++||.+++|.+++.|+ ++.+.+++.|.+++|+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~  145 (192)
T 3mqg_A           85 TNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALV  145 (192)
T ss_dssp             CSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             ecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEE
Confidence                              4555667777777777777775 78888999999999998765

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.70  E-value=6.2e-16  Score=129.01  Aligned_cols=124  Identities=14%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             EEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEEC--CCCEECCCcEECCCcEECCCCEECCCcEEe-eeEEC
Q 018327          214 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVH--ESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  290 (358)
Q Consensus       214 ~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~  290 (358)
                      ..-++++..+++..+.+++ ........+++.+.+.+++.|+  +++.|+++++|+.++.||++|.|+.++.|. ++.|+
T Consensus        51 ~iaig~~~~r~~~~~~l~~-~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig  129 (194)
T 3bfp_A           51 FIAIGNNEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  129 (194)
T ss_dssp             EECCCCHHHHHHHHHHHHT-TTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEeCCHHHHHHHHHHHHH-cCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence            4455666655555544432 1223345567888888888888  888888888888888888999998888888 78888


Q ss_pred             CCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          291 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       291 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++|+|++++.|.+ +.||++|+||.++.|.+++.||++++||+++.+..
T Consensus       130 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~  178 (194)
T 3bfp_A          130 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  178 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            9999988888887 78888888888888888888888888888877743

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.69  E-value=1.4e-16  Score=137.40  Aligned_cols=198  Identities=15%  Similarity=0.115  Sum_probs=117.0

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE   82 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~   82 (358)
                      |||||||.|+||++   . ||+|+|++|+|||+|+++.  ..++++++|++++.   +.+ +..    .++.+  ..  .
T Consensus        28 aiILAgG~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~----~~v~~--~~--~   89 (236)
T 2px7_A           28 VLIPAAGNGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG----LGAVF--LE--G   89 (236)
T ss_dssp             EEEECCC----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT----CSCEE--EE--C
T ss_pred             EEEEcCCCCccCCC---C-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc----CCcEE--Ee--C
Confidence            99999999999985   4 9999999999999999999  67899999999851   111 111    23433  22  2


Q ss_pred             cCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEeec
Q 018327           83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK  160 (358)
Q Consensus        83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ek  160 (358)
                      ..+...++..+++.+.   .+.+++++||. +.. ..++.+++.+.+.+...+ +......  ....+ + |++..+.++
T Consensus        90 ~~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~i~-~~~~~~~--~~~~~-~-G~v~~~~~~  161 (236)
T 2px7_A           90 GATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSGAAVP-VLPVPDT--LMAPE-G-EAYGRVVPR  161 (236)
T ss_dssp             CSSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHSEEEE-EEECCSE--EEEEC-S-SSCEEEECG
T ss_pred             CCchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcCCeEE-EEecCCc--EEEec-C-CeEEecCCh
Confidence            3467888999988873   33799999998 333 458888888766532222 2211111  11123 3 777665543


Q ss_pred             CCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          161 PKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       161 ~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      ..    -......++|+++.+..+...   ......+....+.. ..++..+..++.|.|++||+||.++...+
T Consensus       162 ~~----~~~~~~~~~f~~~~l~~~~~~~~~~g~~~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l  231 (236)
T 2px7_A          162 EA----FRLVQTPQGFFTALLREAHAYARRKGLEASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALA  231 (236)
T ss_dssp             GG----CEEECSCEEEEHHHHHHHHHHHHHHTCCCSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             Hh----hccccCCeEEcHHHHHHHHHHHHhcCCCchhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence            21    011112467787765432210   00111122222222 33577777777899999999999987654

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.69  E-value=1e-15  Score=130.89  Aligned_cols=204  Identities=18%  Similarity=0.183  Sum_probs=133.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      .+||||||.|+||+.   ..||+|+|++|+|||+|+++.+.+++ +++++|++++.. +.+++++..     .+.+.  .
T Consensus         9 ~aIIlAaG~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-----~v~~v--~   78 (231)
T 3q80_A            9 VAIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAMIV--A   78 (231)
T ss_dssp             EEEEECCCCCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-----GCEEE--E
T ss_pred             EEEEECCCCCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-----CeEEE--c
Confidence            589999999999975   68999999999999999999999885 999999999864 445544432     23332  1


Q ss_pred             cCCcCCCchHHHHHHhhccCC-CCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCc
Q 018327           80 ETEPLGTAGPLALARDKLIDD-TGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~-~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~  153 (358)
                        ...+..++++.+++.+... ..+.++++.||..  ....++.+++.+.+. .++.+..   .++-    ...+++ |.
T Consensus        79 --gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~-~~~~i~~~p~~dt~----~~~~~~-g~  150 (231)
T 3q80_A           79 --GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDG-YAAVVPVLPLSDTI----KAVDAN-GV  150 (231)
T ss_dssp             --CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTT-CSEEEEEECCSSCE----EEECTT-SB
T ss_pred             --CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhc-CCeEEEEEeccCCE----EEEcCC-Cc
Confidence              1223468899999888532 1248899999993  344588999887652 3343433   3332    224554 77


Q ss_pred             EEEEeecCCCCCCCe--EEEEEEEEChhhhhhcc----CC-CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHH
Q 018327          154 VEKFVEKPKLFVGNK--INAGIYLLNPAVLDRIE----LR-PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYIT  225 (358)
Q Consensus       154 v~~~~ek~~~~~~~~--~~~Giy~~~~~~l~~l~----~~-~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~  225 (358)
                      +....+.     +.+  ..+ -++|+.+.+....    .+ ......|-...+...| ++..+.-+..+..++||+|+..
T Consensus       151 v~~~~~r-----~~l~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~  224 (231)
T 3q80_A          151 VLGTPER-----AGLRAVQT-PQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLL  224 (231)
T ss_dssp             EEECCCG-----GGEEEECS-CEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHH
T ss_pred             EEEecch-----hheEEEcC-CcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHH
Confidence            7665432     222  223 4788877665442    11 1122345444444444 4766666667889999999988


Q ss_pred             HHHH
Q 018327          226 GLRL  229 (358)
Q Consensus       226 a~~~  229 (358)
                      +...
T Consensus       225 ae~~  228 (231)
T 3q80_A          225 AQAI  228 (231)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.68  E-value=4.8e-16  Score=137.74  Aligned_cols=94  Identities=12%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCEE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTV  312 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i  312 (358)
                      .+.+.|.++++|++++.|+++ +|+.++.||++|.|+.++.|+ ++.||++|.|++++.|.+         ++||++|+|
T Consensus       133 ~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~I  211 (304)
T 3eg4_A          133 VPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFI  211 (304)
T ss_dssp             CTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEE
T ss_pred             cCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEE
Confidence            344444455555555555544 455567777777777777777 577888888888888876         899999999


Q ss_pred             CCccEEcCccEECCCcEECCceEEc
Q 018327          313 GQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      |.++.|.++++||++++||++++|.
T Consensus       212 G~~a~I~~gv~IG~~avIgagsvV~  236 (304)
T 3eg4_A          212 GARSEVVEGCIVREGSVLGMGVFIG  236 (304)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCCEEcCCcEECCCcEECCCCEEc
Confidence            9999999999999999999999986

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.67  E-value=9.7e-16  Score=135.50  Aligned_cols=52  Identities=13%  Similarity=0.052  Sum_probs=29.3

Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ||++|+|+.++.+.+++.||+++.||+++.|.       ++.+.+++.|.+|+|+++++
T Consensus       146 IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~~  204 (283)
T 4eqy_A          146 VGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVIA  204 (283)
T ss_dssp             ECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEE
T ss_pred             ECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecccCCCcEE
Confidence            33444444444444445555555555555542       34556777788888887664

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.66  E-value=3.9e-15  Score=126.85  Aligned_cols=124  Identities=18%  Similarity=0.164  Sum_probs=99.1

Q ss_pred             EEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCC
Q 018327          214 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG  292 (358)
Q Consensus       214 ~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~  292 (358)
                      +.-+.++....+..+.+.. ........+.+.+.+.+.+.+++++.|+++++|++++.||++|.|+.++.|. ++.|+++
T Consensus        75 ~iAIg~~~~R~~i~~~l~~-~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~  153 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARD-HGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAA  153 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHH-TTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             EEecCCHHHHHHHHHHHHh-cCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            3345555554444444332 2333455568888899999999999999999999999999999999999998 7999999


Q ss_pred             cEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          293 VRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       293 ~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      |.|++++.|.+ +.||++|+||.++.|.+++.||++++||+++++..
T Consensus       154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~  200 (220)
T 4ea9_A          154 CHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVR  200 (220)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcc
Confidence            99999999988 79999999999999998888998888888887754

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.66  E-value=1.2e-15  Score=124.94  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=93.0

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCCEE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHSTV  312 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i  312 (358)
                      .+.+++.+.+++.||+++.|+++++|..+   +.||++|.|+++|.|.     +++|+++|.|++++.|.+++||++|+|
T Consensus        20 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I   99 (173)
T 1xhd_A           20 FIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALI   99 (173)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEE
T ss_pred             EECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEE
Confidence            45677777778888888888888888654   8999999999999998     799999999999999999999999999


Q ss_pred             CCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          313 GQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      |.++.|.+++.||+++.|++++.+. +..+.++..+
T Consensus       100 g~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  135 (173)
T 1xhd_A          100 GMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (173)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             cCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence            9999999999999999999999986 4455555444

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.66  E-value=1e-15  Score=127.09  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=91.9

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCc---EECCCCEECCCcEE------------eeeEECCCcEECCCcEEeccE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDV---AVGPGCVVESGVRL------------SRCTVMRGVRIKKHACISSSI  305 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---~ig~~~~ig~~~~i------------~~~~i~~~~~i~~~~~i~~~~  305 (358)
                      .+.+.+.+.+++.||+++.|+++++|..++   .||++|.|++++.|            .+++|+++|.|++++.|.+++
T Consensus        23 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~  102 (187)
T 3r3r_A           23 MIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCT  102 (187)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCE
T ss_pred             EECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcE
Confidence            356667777777888888888888886544   99999999999999            579999999999999999999


Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK  348 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~  348 (358)
                      ||++|+||.++.|.+++.||++++|++++.+.. ..+.++..+.
T Consensus       103 Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~  146 (187)
T 3r3r_A          103 IGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYL  146 (187)
T ss_dssp             ECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEE
Confidence            999999999999999999999999999999974 5555555443

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.66  E-value=1.3e-15  Score=124.80  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=95.0

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCCE
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHST  311 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~  311 (358)
                      ..+.+.+.+.+++.|++++.|++++.|..+   +.||++|.|+++|.|.     +++||++|.|++++.|.+++||++|+
T Consensus        17 ~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~   96 (173)
T 1v3w_A           17 AFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVI   96 (173)
T ss_dssp             CEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEE
T ss_pred             CEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCE
Confidence            345677778888889999999999988754   8999999999999998     59999999999999999999999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      ||.++.|.+++.||+++.|++++.+. +..+.++..+
T Consensus        97 Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v  133 (173)
T 1v3w_A           97 IGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             ECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             ECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence            99999999999999999999999996 4556555554

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.65  E-value=1.1e-15  Score=127.11  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEEe------eeEECCCcEECCCcEEeccEEccCCE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS------RCTVMRGVRIKKHACISSSIIGWHST  311 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i~------~~~i~~~~~i~~~~~i~~~~i~~~~~  311 (358)
                      .+.+++.+.+++.||+++.|+++++|..   ++.||++|.|+++|.|.      +++|+++|.|++++.|.+++||++|+
T Consensus        41 ~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~  120 (191)
T 3ixc_A           41 FIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAF  120 (191)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCE
T ss_pred             EECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCE
Confidence            3456666666777777777777777753   34789999999999997      79999999999999999999999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI  347 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i  347 (358)
                      ||.++.|.+++.||++++|++++.+. +..+.++..+
T Consensus       121 Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v  157 (191)
T 3ixc_A          121 VGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELW  157 (191)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             ECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEE
Confidence            99999999999999999999999986 3455555443

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.65  E-value=2.9e-15  Score=124.97  Aligned_cols=108  Identities=14%  Similarity=0.080  Sum_probs=86.4

Q ss_pred             cccCCcEEecceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEe-----------------eeEECCCcEECCCcE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLS-----------------RCTVMRGVRIKKHAC  300 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~-----------------~~~i~~~~~i~~~~~  300 (358)
                      .+.+.+.|.+++.||+++.|+++++|.   .++.||++|.|+++|.|.                 ++.|++++.|+.++.
T Consensus        20 ~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~   99 (194)
T 3tv0_A           20 VVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCY   99 (194)
T ss_dssp             EECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCE
T ss_pred             EEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEeccee
Confidence            345566666677777777777777764   346899999999999984                 368999999999999


Q ss_pred             EeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcE-EccCceec
Q 018327          301 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEIK  348 (358)
Q Consensus       301 i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~-v~~~~~i~  348 (358)
                      +.++.|+++|+||.++.|.+++.||++|+||+++.|.+.. +.|++.|.
T Consensus       100 i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~  148 (194)
T 3tv0_A          100 SQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIY  148 (194)
T ss_dssp             ECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEE
T ss_pred             EeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEE
Confidence            9999999999999999999999999999999999997544 44444443

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.65  E-value=1.7e-16  Score=133.38  Aligned_cols=172  Identities=16%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||.|+||+     .||+|+|++|+|||+|+++.+..+ +++++|++++...   +++.      ++++... +.
T Consensus        16 ~~iILA~G~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~------~~~~v~~-~~   79 (201)
T 2e8b_A           16 TCYVLAGGKSKRFG-----EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK---FSFL------NAPVVLD-EF   79 (201)
T ss_dssp             EEEEEEESSCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG------TCCEEEC-CC
T ss_pred             eEEEECCCCCccCC-----CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC------CceEEec-CC
Confidence            69999999999996     589999999999999999999988 9999999987643   2211      4444332 23


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-cc-CHHH-HHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EY-PFAE-MIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      ...|+++++..+.+.+  .. +.+++++||..+ +. .++. ++    +  .++++           ..++  ++     
T Consensus        80 ~~~g~~~~i~~al~~~--~~-~~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v-----------~~~~--g~-----  132 (201)
T 2e8b_A           80 EESASIIGLYTALKHA--KE-ENVFVLSGDLPLMKKETVLYVLE----N--FKEPV-----------SVAK--TE-----  132 (201)
T ss_dssp             SSCCHHHHHHHHHHHC--SS-SEEEEEETTCTTCCHHHHHHHHH----T--CCSSE-----------EEEE--SS-----
T ss_pred             CCCCcHHHHHHHHHHc--CC-CCEEEEeCCcCcCCHHHHHHHHh----c--CCEEE-----------EecC--Cc-----
Confidence            4579999999999888  33 489999999943 32 2555 54    1  12111           1111  21     


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccC---CCCCcccchHHHHHhcCceEEEee--cCeEE--ecCCHHHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEGKLFAMVL--PGFWM--DIGQPRDYITGLRL  229 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~d~l~~l~~~~~v~~~~~--~~~~~--di~t~~dy~~a~~~  229 (358)
                              .....|+| |+++.++.+..   .......++++.    ..+..+..  .+.|.  |+|||+||.++.+.
T Consensus       133 --------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~~  197 (201)
T 2e8b_A          133 --------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILAI  197 (201)
T ss_dssp             --------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHHHHHH----HCCEEEECCGGGGGGGCCSCCC---------
T ss_pred             --------eeeEEEEE-eChhHHHHHHHHHHcCCchHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence                    24568999 99998876642   222222334433    24445554  35788  99999999887643

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.64  E-value=1.5e-15  Score=133.16  Aligned_cols=96  Identities=14%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST  311 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~  311 (358)
                      +.+.+.+.+++.|++++.|+++ ++..++.||++|.|+.++.|+ ++.||++|.|++++.|.+         ++||++|+
T Consensus       107 I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~  185 (276)
T 3gos_A          107 VVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCF  185 (276)
T ss_dssp             ECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCE
T ss_pred             ECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCE
Confidence            5677777788888888888777 777789999999999999998 599999999999999854         79999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEcC
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ||.++.|.+++.||++++||++++|..
T Consensus       186 IG~~a~I~~gv~IG~~avIgagsvV~~  212 (276)
T 3gos_A          186 VGARSEVVEGVIVEEGSVISMGVFIGQ  212 (276)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECC
Confidence            999999999999999999999999963

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.64  E-value=2e-16  Score=132.45  Aligned_cols=180  Identities=18%  Similarity=0.196  Sum_probs=108.7

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||.|+||++     ||+|+|++|+|||+|+++.+..+   +++|++++..+.+.+++.     .++ +... ..
T Consensus         4 ~~iIlAgG~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~-----~~~-~v~~-~~   68 (197)
T 3d5n_A            4 GVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM-----DQI-VIYN-PF   68 (197)
T ss_dssp             EEEEECSCCTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT-----TSC-EEEC-TT
T ss_pred             EEEEECCcCcccCCC-----CeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc-----CCE-EEEC-CC
Confidence            699999999999964     89999999999999999999876   888888876554443332     245 4322 22


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEee
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVE  159 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~e  159 (358)
                      ...|+.++++.+++.+.  ..+.+++++||. +.. ..++.+++.+ +.+.+..+..          .+   ++      
T Consensus        69 ~~~G~~~si~~al~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~----------~~---g~------  126 (197)
T 3d5n_A           69 WNEGISTSLKLGLRFFK--DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPT----------HK---GE------  126 (197)
T ss_dssp             GGGCHHHHHHHHHHHTT--TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEE----------ET---TE------
T ss_pred             CCCCHHHHHHHHHHhhc--cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEE----------eC---Cc------
Confidence            24688999999998884  324899999999 333 3477777765 3332222210          11   11      


Q ss_pred             cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhc-CceEEEeec--CeEEecCCHHHHHHHHHHH
Q 018327          160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE-GKLFAMVLP--GFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~-~~v~~~~~~--~~~~di~t~~dy~~a~~~~  230 (358)
                       +..+         .+|+++.+..+..-..  ..++...+... ..+..+..+  +.|.|++||+||.++...+
T Consensus       127 -~~~P---------~~~~~~~l~~l~~l~g--~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~  188 (197)
T 3d5n_A          127 -RGNP---------VLISKSLFNEIEKLRG--DVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFH  188 (197)
T ss_dssp             -ECSC---------EEEEHHHHHHHHHCCT--TCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC----------
T ss_pred             -ccCC---------EEECHHHHHHHHccCC--CccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhh
Confidence             1112         3778887776542111  12222222222 235555543  5789999999998876543

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.64  E-value=9.5e-16  Score=128.70  Aligned_cols=107  Identities=23%  Similarity=0.298  Sum_probs=81.4

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .+||||||.|+||+.    .||+|+|++|+|||+|+++.+.. ++++|+|++++..+.+    .+    .++.+......
T Consensus         8 ~~iILAgG~s~Rmg~----~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~~----~~~~~v~~~~~   74 (201)
T 1e5k_A            8 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQEIY----QA----SGLKVIEDSLA   74 (201)
T ss_dssp             EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSHHHH----HT----TSCCEECCCTT
T ss_pred             eEEEEcCCCCCcCCC----CCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcHHHH----hh----cCCeEEecCCC
Confidence            589999999999972    69999999999999999999985 5899999998764322    11    35554332222


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHH
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEF  124 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~  124 (358)
                      ...|...++..+++.+  .. +.+++++||. +.. ..++.+++.
T Consensus        75 ~~~G~~~si~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           75 DYPGPLAGMLSVMQQE--AG-EWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             CCCSHHHHHHHHHHHC--CS-SEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhC--CC-CcEEEEeCCcCcCCHHHHHHHHhh
Confidence            2268899999999888  33 3899999999 344 347777765

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.64  E-value=6.6e-16  Score=130.16  Aligned_cols=100  Identities=15%  Similarity=0.226  Sum_probs=85.0

Q ss_pred             ccccCCcEEec--ceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEE------------
Q 018327          240 LKLATGANIVG--NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI------------  301 (358)
Q Consensus       240 ~~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i------------  301 (358)
                      ..+.+.+.+.+  ++.||+++.|+++++|.+++.||++|.|+.+|.|.    +++||++|.|+++|.|            
T Consensus        39 ~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~  118 (205)
T 3vbi_A           39 VLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNAL  118 (205)
T ss_dssp             EEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSC
T ss_pred             CEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccc
Confidence            34567777776  78889999999999998899999999999999994    3899999999999999            


Q ss_pred             --------------eccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          302 --------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       302 --------------~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                                    .+++||++|+||.++.|.+++.||++|+|++++.+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A          119 MGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             CSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             cCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence                          33788888888888888888888888888888888654

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.63  E-value=4.5e-15  Score=139.82  Aligned_cols=179  Identities=22%  Similarity=0.282  Sum_probs=133.5

Q ss_pred             CeEEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHH--------CC----CCEEEEEeccChHHHHHHHH
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKA--------VG----VTEVVLAINYQPEVMLNFLK   65 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~--------~g----i~~i~vv~~~~~~~i~~~l~   65 (358)
                      |.+||||||.|+||+.   ..||+|+|+   .|+|+|+++++++.+        .|    +..+++...+..+.+++|++
T Consensus       103 vavViLAGG~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~  179 (505)
T 1jv1_A          103 VAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFT  179 (505)
T ss_dssp             EEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHH
T ss_pred             eEEEEEcCCccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHH
Confidence            5689999999999964   789999999   799999999999877        25    67777777767889999998


Q ss_pred             hhhhccCcE---EEEecc---------------------CCcCCCchHHHHHHh-----hccCCCCCcEEEEeCCee-ec
Q 018327           66 EFEAKLGIK---IICSQE---------------------TEPLGTAGPLALARD-----KLIDDTGEPFFVLNSDVI-SE  115 (358)
Q Consensus        66 ~~~~~~~~~---i~~~~~---------------------~~~~g~~~sl~~~~~-----~i~~~~~~~~lv~~gD~i-~~  115 (358)
                      +. +.+|+.   +.+..|                     ..|.|+++.+.....     .+.....++++|+++|.+ ..
T Consensus       180 ~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~  258 (505)
T 1jv1_A          180 KH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVK  258 (505)
T ss_dssp             HT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred             hh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccc
Confidence            72 344552   443332                     357788887765542     222222349999999996 66


Q ss_pred             cCHHHHHHHHHhcCCeeEEEe----cCCCCeeeEEEcCCCCc--EEEEeecCCC----------CCCCeEEEEEEEEChh
Q 018327          116 YPFAEMIEFHKAHGGEASIMV----DEPSKYGVVVMEESTGK--VEKFVEKPKL----------FVGNKINAGIYLLNPA  179 (358)
Q Consensus       116 ~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~--v~~~~ek~~~----------~~~~~~~~Giy~~~~~  179 (358)
                      .+...++..|..++.++++.+    ..+..+|++..++  |+  +.++.++|..          ...+..++|.|+|+.+
T Consensus       259 ~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~d--g~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~  336 (505)
T 1jv1_A          259 VADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVD--GVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVP  336 (505)
T ss_dssp             TTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEET--TEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHH
T ss_pred             cchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEEC--CeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHH
Confidence            667789999999999888776    4567899988753  44  5666666641          1236899999999999


Q ss_pred             hhhhcc
Q 018327          180 VLDRIE  185 (358)
Q Consensus       180 ~l~~l~  185 (358)
                      +++.+.
T Consensus       337 ~L~~i~  342 (505)
T 1jv1_A          337 FLRDVV  342 (505)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887663

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.63  E-value=4.3e-15  Score=130.27  Aligned_cols=20  Identities=10%  Similarity=0.109  Sum_probs=15.7

Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.+++++.|.+|+|+++++
T Consensus       164 ~a~Ig~~s~V~~dvp~~~~~  183 (270)
T 1j2z_A          164 GCMIAGKSALGKDVPPYCTV  183 (270)
T ss_dssp             TCEECTTCEECSBBCTTEEE
T ss_pred             ceEEecCcEecccCCCCeEE
Confidence            56677788888999988765

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.63  E-value=2.9e-15  Score=124.53  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=89.8

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEEeee------------EECCCcEECCCcEEeccEE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSRC------------TVMRGVRIKKHACISSSII  306 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i~~~------------~i~~~~~i~~~~~i~~~~i  306 (358)
                      +.+.+.+.+++.||+++.|++++.|.+   ++.||++|.|++++.|..+            +||++|.|+++|.|.+++|
T Consensus        28 I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~I  107 (189)
T 3r1w_A           28 VDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTI  107 (189)
T ss_dssp             ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEE
T ss_pred             ECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEE
Confidence            556667777777788888888887763   3488999999999999754            9999999999999999999


Q ss_pred             ccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327          307 GWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK  348 (358)
Q Consensus       307 ~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~  348 (358)
                      |++|+||.++.|.+++.||++++|++++.+. +..+.++..+.
T Consensus       108 g~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~  150 (189)
T 3r1w_A          108 GNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYM  150 (189)
T ss_dssp             CSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEE
T ss_pred             CCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEE
Confidence            9999999999999999999999999999996 45555555543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.63  E-value=4.8e-15  Score=125.59  Aligned_cols=109  Identities=20%  Similarity=0.261  Sum_probs=93.9

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECC----CcEECCCCEECCCcEEee---------------eEECCCcEECCCc
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHA  299 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~ig~~~~i~~---------------~~i~~~~~i~~~~  299 (358)
                      ...+.+.+.+.+++.||+++.|+++++|..    ++.||++|.|+++|.|..               +.||++|.|++++
T Consensus        45 ~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~  124 (213)
T 3kwd_A           45 TAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMA  124 (213)
T ss_dssp             TCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTC
T ss_pred             CCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCc
Confidence            345677888888889999999999998853    589999999999999984               8999999999999


Q ss_pred             EEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          300 CISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       300 ~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      .|.+ +.||++|+||.++.|.+ ++||++++||+++.+.+..+.+++.|.
T Consensus       125 ~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~~~~i~~~~~v~  173 (213)
T 3kwd_A          125 LIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQDVEIPPGKYVP  173 (213)
T ss_dssp             EEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEESCEECTTBEEC
T ss_pred             EEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEECCcEeCCCCEEC
Confidence            9998 89999999999999998 999999999999999765555555443

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.62  E-value=3.8e-15  Score=132.31  Aligned_cols=96  Identities=14%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST  311 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~  311 (358)
                      +.+.+.+.+++.|++++.|+++ ++..++.||++|.|+.++.|+ ++.||++|.|++++.|.+         ++||++|+
T Consensus       148 I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~  226 (316)
T 3tk8_A          148 VVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCF  226 (316)
T ss_dssp             ECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCE
T ss_pred             EeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCE
Confidence            4566666666666666666665 566677888888888888887 688888888888888877         78999999


Q ss_pred             ECCccEEcCccEECCCcEECCceEEcC
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ||.++.|.+++.||++++||++++|..
T Consensus       227 IG~~a~I~~gv~IG~g~vIgagsvV~~  253 (316)
T 3tk8_A          227 IGARSEVVEGVIVEENSVISMGVYLGQ  253 (316)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ECCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            999999999999999999999999864

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.62  E-value=1.1e-14  Score=127.67  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEE--------------eeeEECCCcEECCCcEEec-------
Q 018327          245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL--------------SRCTVMRGVRIKKHACISS-------  303 (358)
Q Consensus       245 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i--------------~~~~i~~~~~i~~~~~i~~-------  303 (358)
                      .+.|.+++.||+++.|+++++|.+++.||++|.|++++.|              .++.||++|.|++++.|..       
T Consensus        28 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~  107 (266)
T 3r0s_A           28 YAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDG  107 (266)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTS
T ss_pred             CCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCc
Confidence            3333333444444444444444445555555555555555              3455555555555555542       


Q ss_pred             -------------------cEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          304 -------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       304 -------------------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                                         +.||++|+|+.++.+.+++.||+++.||+++.+.       ++.+.+++.|.+|+|+++++
T Consensus       108 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~~~  187 (266)
T 3r0s_A          108 FTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCLA  187 (266)
T ss_dssp             EEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTTEEE
T ss_pred             cEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecccCCCeEE
Confidence                               3455555555555555556666666666665542       35567777888899988765

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.62  E-value=1.1e-14  Score=127.61  Aligned_cols=114  Identities=12%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEE-------------eeeEECCCcEECCCcEEe--------
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------SRCTVMRGVRIKKHACIS--------  302 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i-------------~~~~i~~~~~i~~~~~i~--------  302 (358)
                      +.+.|.+++.|++++.|+++++|.+++.||++|.|++++.|             .++.||+++.|++++.|.        
T Consensus        30 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~  109 (265)
T 4e6u_A           30 PYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNA  109 (265)
T ss_dssp             TTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTS
T ss_pred             CCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCC
Confidence            33333344444444444444444444555555555555555             245555555555555554        


Q ss_pred             ------------------ccEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          303 ------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       303 ------------------~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                                        ++.|+++|+|+.++.+.++++||+++.||+++.+.       ++.+.+++.|.+|+|+++++
T Consensus       110 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~~  189 (265)
T 4e6u_A          110 LTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMA  189 (265)
T ss_dssp             EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEE
T ss_pred             ceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeEE
Confidence                              24455555555555555556666666666665542       45667778888999988765

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.61  E-value=7.2e-15  Score=127.27  Aligned_cols=106  Identities=18%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCc----EECCCCEECCCcEEe------------------------eeEECCC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDV----AVGPGCVVESGVRLS------------------------RCTVMRG  292 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~----~ig~~~~ig~~~~i~------------------------~~~i~~~  292 (358)
                      .+.+.+.+.+++.||+++.|+++++|....    +||++|.|+++|.|.                        +++||++
T Consensus        67 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~  146 (247)
T 1qre_A           67 YIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN  146 (247)
T ss_dssp             EECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTT
T ss_pred             EECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCC
Confidence            355666666678888888888888776543    899999999999997                        2899999


Q ss_pred             cEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          293 VRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       293 ~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      |.|+++|.|.+ ++||++|+||.++.|.+ +.||++++|++++.+.+..+.+++.|
T Consensus       147 v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v  201 (247)
T 1qre_A          147 VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYI  201 (247)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEE
T ss_pred             CEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEE
Confidence            99999999999 89999999999999999 99999999999999955455555444

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.61  E-value=7.2e-15  Score=122.58  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=88.5

Q ss_pred             EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec-----------------cE
Q 018327          247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----------------SI  305 (358)
Q Consensus       247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~-----------------~~  305 (358)
                      .+..++.|+|++.|++++.|.+++.||++|.|+++|.|.    +..||++|.|++++.|.+                 +.
T Consensus         8 k~~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~   87 (194)
T 3tv0_A            8 KTQKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMI   87 (194)
T ss_dssp             ----CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEE
T ss_pred             hcCCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceE
Confidence            456788888888888889888899999999999999885    468999999999999853                 46


Q ss_pred             EccCCEECCccEE-----cCccEECCCcEECCceEEc-CcEEccCceeccC--CCCCccc
Q 018327          306 IGWHSTVGQWARV-----ENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS--ILKPEIV  357 (358)
Q Consensus       306 i~~~~~ig~~~~i-----~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~--~~~~~~~  357 (358)
                      ||++++|+.++.+     +++++|+.+++|++++.|+ ++.+++++.|.++  +|+++++
T Consensus        88 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv  147 (194)
T 3tv0_A           88 IGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI  147 (194)
T ss_dssp             ECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEE
T ss_pred             ECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEE
Confidence            8888888866654     4567777777777788885 8888999999999  9998776

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.60  E-value=1.7e-14  Score=125.87  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEE-------------e-eeEECCCcEECCCcEEe-------
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------S-RCTVMRGVRIKKHACIS-------  302 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i-------------~-~~~i~~~~~i~~~~~i~-------  302 (358)
                      +.+.+.+++.|++++.|+++++|.+++.||++|.|++++.|             . ++.||++|.|++++.|.       
T Consensus        23 ~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~  102 (259)
T 3hsq_A           23 PYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDS  102 (259)
T ss_dssp             TTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTB
T ss_pred             CCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCC
Confidence            33333334444444444444444444555555555555555             2 44555555555555554       


Q ss_pred             -----------------c-cEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327          303 -----------------S-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       303 -----------------~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~  357 (358)
                                       + +.||++++++.++.+.+++.||+++.||+++.+.       ++.+++++.|.+|+|+++++
T Consensus       103 ~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~~  182 (259)
T 3hsq_A          103 PTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYSTV  182 (259)
T ss_dssp             CEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEECSBBCTTEEE
T ss_pred             cEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEcccCCCCcEE
Confidence                             2 3444444444444444455555555555555542       46667888888999998765

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.60  E-value=1.7e-14  Score=126.15  Aligned_cols=20  Identities=10%  Similarity=-0.081  Sum_probs=15.6

Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.+++++.|.+++|+++++
T Consensus       168 ~~~ig~~s~V~~~v~~~~~~  187 (262)
T 2qia_A          168 HVMVGGCSGVAQDVPPYVIA  187 (262)
T ss_dssp             TCEECSSCEECSBBCTTEEE
T ss_pred             CCEEccCCEECCcCCCCeEE
Confidence            56677788888899888765

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.60  E-value=7.6e-15  Score=123.64  Aligned_cols=107  Identities=16%  Similarity=0.081  Sum_probs=80.0

Q ss_pred             ceEECCCCEECCCcEECC--CcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe----ccEEccCCEECCccEE-----
Q 018327          251 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS----SSIIGWHSTVGQWARV-----  318 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~----~~~i~~~~~ig~~~~i-----  318 (358)
                      ...+++++.|++++.|..  ++.||++|.|+++|.|. ++.||++|.|++++.|.    +++||++|.|++++.|     
T Consensus        32 ~~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~  111 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAID  111 (205)
T ss_dssp             CSEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEEC
T ss_pred             CeEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCC
Confidence            345566666666666655  67888888888888887 78899999999999993    3789999999988877     


Q ss_pred             --------------------cCccEECCCcEECCc------eEEc-CcEEccCceeccCCCCCccc
Q 018327          319 --------------------ENMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       319 --------------------~~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                                          ..+++||++|.||++      +.|+ ++.+++++.|.+++|+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~  177 (205)
T 3vbi_A          112 DFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIY  177 (205)
T ss_dssp             CCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CcccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEE
Confidence                                234555555555555      4453 67888999999999998775

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.60  E-value=1.3e-14  Score=123.55  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEcCcc
Q 018327          245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMT  322 (358)
Q Consensus       245 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~  322 (358)
                      .+.+++.+.+++++.++++++|.++++|+++++||++|.|. +++|++++.||++|.|.. +.++.++.||+++.|+.++
T Consensus        99 ~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~  178 (220)
T 4ea9_A           99 VNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGA  178 (220)
T ss_dssp             CCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             CCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence            45667777788888888888887778888888888887777 677777777777776665 5566556655555555555


Q ss_pred             EECCCcEECCceEEcCcEEccCceeccCCCCCccc
Q 018327          323 ILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +|..+++||++     +.+++++.|.+++|+++++
T Consensus       179 ~i~~~~~Ig~~-----~~igagsvv~~~v~~~~~~  208 (220)
T 4ea9_A          179 RVIPGVTIGAD-----TIVGAGGVVVRDLPDSVLA  208 (220)
T ss_dssp             EECTTCEECTT-----CEECTTCEECSCBCTTCEE
T ss_pred             EEcCCcEECCC-----CEECCCCEEccccCCCcEE
Confidence            55555555554     4556677888899998775

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.59  E-value=7.2e-15  Score=122.23  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEe------ccEEccCCEECCccEE
Q 018327          249 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS------SSIIGWHSTVGQWARV  318 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~------~~~i~~~~~ig~~~~i  318 (358)
                      .+...|++++.|++++.|.+++.||++|.|+++|.|.    +++||++|.|+++|.|.      +++||++|.||+++.+
T Consensus        31 ~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i  110 (191)
T 3ixc_A           31 GVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL  110 (191)
T ss_dssp             TBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE
Confidence            4566777777777777777788888888888888886    34899999999999998      7899999999999887


Q ss_pred             cCccEECCCcEECCceEEc-------CcEEccCceec--cCCCCCccc
Q 018327          319 ENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      .+ ++||+++.||+++.+.       ++.+++++.|.  +++|+++++
T Consensus       111 ~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v  157 (191)
T 3ixc_A          111 HA-CTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELW  157 (191)
T ss_dssp             CS-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             EC-CEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEE
Confidence            76 7777776666665553       56667777777  678887664

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.59  E-value=1.6e-14  Score=121.50  Aligned_cols=181  Identities=16%  Similarity=0.173  Sum_probs=115.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |.+||||||.|+||+     .||+|+|++|+|||+|+++.+..+   +++|++++ .+.+. .+.   +.+++.+.... 
T Consensus         1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~---~~~~~~~v~d~-   66 (208)
T 3ngw_A            1 MKVAVLVGGVGRRIG-----MEKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLS---SRYEAEFIWDL-   66 (208)
T ss_dssp             CEEEEECCCCCTTTT-----SCGGGCEETTEEHHHHHHHHHTTS---EEEEECSS-HHHHH-HHH---TTSCSCEECCT-
T ss_pred             CEEEEECCCchhhCC-----CCCcccEECCeeHHHHHHHHhcCC---CEEEEECC-HHHHH-HHH---HhcCCeEEecC-
Confidence            899999999999996     589999999999999999999876   88888864 23332 222   23455554322 


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      ....|...++..+++.+   . +.+ ++.||.. .+ ..++.+++.+.+.+.++.+.           .  + |+     
T Consensus        67 ~~~~G~~~si~~gl~~~---~-~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~-----------~--~-g~-----  122 (208)
T 3ngw_A           67 HKGVGSIAGIHAALRHF---G-SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIP-----------K--H-DY-----  122 (208)
T ss_dssp             TCCCSHHHHHHHHHHHH---S-SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEE-----------E--S-SS-----
T ss_pred             CCCCChHHHHHHHHHHc---C-CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEE-----------c--C-CC-----
Confidence            22347778999999887   2 377 9999993 33 34788888776544433322           1  1 21     


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccCC--CCCcccchHHHHHhcCceEEEeec---------CeEEecCCHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIELR--PTSIEKEVFPKIALEGKLFAMVLP---------GFWMDIGQPRDYITGL  227 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~--~~~~~~d~l~~l~~~~~v~~~~~~---------~~~~di~t~~dy~~a~  227 (358)
                      ..|-          +-+++++.+..+...  ...  .. +..+++...+.....+         +.+.|+|||+||.++.
T Consensus       123 ~~Pl----------~al~~~~~~~~l~~~l~~G~--~~-~~~~l~~~~~~~v~~~~~~~~d~~~~~~~ninTpeDl~~~~  189 (208)
T 3ngw_A          123 PEPL----------LAYYAESAADELERAILQGI--RK-ILVPLERLNVVYYPVEKLRKFDKELISFFNINTPDDLKRAE  189 (208)
T ss_dssp             BCTT----------EEEECGGGHHHHHHHHHTTC--CC-THHHHHTSCEEEEEGGGGTTTCTTCGGGCCCCSHHHHHHHH
T ss_pred             eeEE----------EEEEcHHHHHHHHHHHHcCC--CC-HHHHHHhCCEEEecHHHhcccCcccceEEecCCHHHHHHHH
Confidence            1111          134566666544211  011  11 3344444445444443         4589999999999887


Q ss_pred             HHHHH
Q 018327          228 RLYLD  232 (358)
Q Consensus       228 ~~~l~  232 (358)
                      +.+.+
T Consensus       190 ~~~~~  194 (208)
T 3ngw_A          190 EICSK  194 (208)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            66543

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.59  E-value=1.8e-14  Score=119.97  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCC------cEECCCCEECCCcEEe-eeEECCCcEECCCcEE-------------
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPD------VAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI-------------  301 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~------~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i-------------  301 (358)
                      +++++.|.+++.|++++.||+++.|+++      +.||++|.|+.++.|. ++.|++++.|++++.+             
T Consensus        18 Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~~   97 (192)
T 3mqg_A           18 IGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERK   97 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBCCG
T ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccccc
Confidence            3444444444444444444444444444      4444444444444444 4445555555555444             


Q ss_pred             ---eccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          302 ---SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       302 ---~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                         .+++|+++|+||.++.|.+++.||++++|++++++..
T Consensus        98 ~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~  137 (192)
T 3mqg_A           98 SEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNK  137 (192)
T ss_dssp             GGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECc
Confidence               3368999999999999999999999999999999864

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.59  E-value=2.2e-14  Score=123.84  Aligned_cols=112  Identities=16%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCE--ECCccEEcCc
Q 018327          246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHST--VGQWARVENM  321 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~--ig~~~~i~~~  321 (358)
                      +.+.+++.|++++.||++|+|+.+++|+.+|.||++|.|. +++|++++.||++|+|+. +.+.....  -...+.|+++
T Consensus        92 ~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~  171 (240)
T 3r8y_A           92 ARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD  171 (240)
T ss_dssp             SEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTT
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCC
Confidence            4444444444444444444444444444444444444444 444444444444444433 22222100  0001233344


Q ss_pred             cEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          322 TILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      |+||.+++|..++.|+ ++.+.+++.|.+++|+++++
T Consensus       172 ~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~  208 (240)
T 3r8y_A          172 VVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVV  208 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEE
Confidence            5555555555555553 56677788888899998765

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.58  E-value=4e-14  Score=124.68  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCc----
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQW----  315 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~----  315 (358)
                      +.+.+.+.+++.|++++.|++++.|++++.||++|.|+.++.|. ++.|+++|.|++++.|.. +.+++++.++++    
T Consensus        79 I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~~~~i~~~~~i~  158 (273)
T 3fs8_A           79 IRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLT  158 (273)
T ss_dssp             ECTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ECCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCCceeecCceEec
Confidence            34445555566666666666677776777777777777777776 677888888888888874 677777666653    


Q ss_pred             ------------cEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          316 ------------ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       316 ------------~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                                  ++|+++++||.+++|..++.|+ ++.+.+++.|.+|+|+++++
T Consensus       159 ~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~  213 (273)
T 3fs8_A          159 NDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVV  213 (273)
T ss_dssp             CCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEE
Confidence                        4555566666666666666674 77888899999999998765

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.57  E-value=4.9e-14  Score=128.36  Aligned_cols=104  Identities=20%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             eEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECC
Q 018327          213 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR  291 (358)
Q Consensus       213 ~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~  291 (358)
                      .+.-++.|...+.....++.... .. ..+.+.+.+.+++.|++++.|+++++|++++.||++|.|+++|.|. ++.||+
T Consensus        78 ~~i~~~~p~~~~~~~~~~~~~~~-~~-~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~  155 (357)
T 4e79_A           78 NFIIVDNPYLAFAILTHVFDKKI-SS-TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGK  155 (357)
T ss_dssp             EEEECSCHHHHHHHHHTTSSCCC-CC-CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cEEEECCHHHHHHHHHHHhcccc-cc-CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            45566666654433222221111 11 3345555555555555555555555555545555555554444444 444444


Q ss_pred             CcEECCCcEEec-cEEccCCEECCccEE
Q 018327          292 GVRIKKHACISS-SIIGWHSTVGQWARV  318 (358)
Q Consensus       292 ~~~i~~~~~i~~-~~i~~~~~ig~~~~i  318 (358)
                      +|.|++++.|.+ +.||++|.|++++.|
T Consensus       156 ~~~I~~~~~I~~~~~IG~~~~I~~g~~I  183 (357)
T 4e79_A          156 DCFIDSYVTITGSSKLRDRVRIHSSTVI  183 (357)
T ss_dssp             SCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CCEECCCcEEecccEEEeEeeccCCeEE
Confidence            444444444422 444444444444444

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.57  E-value=4.7e-14  Score=125.92  Aligned_cols=20  Identities=10%  Similarity=-0.031  Sum_probs=15.9

Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.+++++.|.+|+|+++++
T Consensus       192 ~a~ig~gs~V~~dvp~~~~~  211 (305)
T 3t57_A          192 FAFIGGGSVVSQDVPKYMMV  211 (305)
T ss_dssp             TCEECTTCEECSBBCTTEEE
T ss_pred             CCEEcCCCeEcccCCCCeEE
Confidence            56667888889999988765

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.57  E-value=8.1e-14  Score=126.29  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             EecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCc
Q 018327          215 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGV  293 (358)
Q Consensus       215 ~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~  293 (358)
                      .-+..|...+.....++.... .....+.+.+.+.+++.|++++.|+++++|++++.||++|.|+++|.|+ ++.||++|
T Consensus        74 ~~~~~p~~~~~~~~~~~~~~~-~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~  152 (341)
T 3eh0_A           74 LVVKNPYLTYARMAQILDTTP-QPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGS  152 (341)
T ss_dssp             EECSCHHHHHHHHHHHHCCCC-CSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEeCCHHHHHHHHHHHhcccC-CccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCc
Confidence            455666664444333332211 2233455666666666666666665555555555555555555555554 45555555


Q ss_pred             EECCCcEEe-ccEEccCCEECCccEE
Q 018327          294 RIKKHACIS-SSIIGWHSTVGQWARV  318 (358)
Q Consensus       294 ~i~~~~~i~-~~~i~~~~~ig~~~~i  318 (358)
                      .|++++.|. ++.||++|.|++++.|
T Consensus       153 ~I~~~~~I~~~~~IG~~~~I~~g~~I  178 (341)
T 3eh0_A          153 RLWANVTIYHEIQIGQNCLIQSGTVV  178 (341)
T ss_dssp             EECSSCEECTTCEECSSCEECTTCEE
T ss_pred             EECCCcEECCCCEECCccEEcCCcEE
Confidence            555555552 2445555554444444

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.57  E-value=6.5e-14  Score=123.33  Aligned_cols=97  Identities=21%  Similarity=0.289  Sum_probs=67.0

Q ss_pred             ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-e--------------eEECCCcEECCCcEEe-c
Q 018327          240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-R--------------CTVMRGVRIKKHACIS-S  303 (358)
Q Consensus       240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~--------------~~i~~~~~i~~~~~i~-~  303 (358)
                      ..+.+++.|.+++.|++++.|+++++|++++.||++|.|+++|.|. +              +.||++|.|+++++|. +
T Consensus         9 ~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~   88 (273)
T 3fs8_A            9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD   88 (273)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS
T ss_pred             eEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC
Confidence            3456677777777777777777777777777777888888877777 3              7788888888777775 3


Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      +.||+++.||.++.|..++.||+++.|++++.+
T Consensus        89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i  121 (273)
T 3fs8_A           89 TIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDI  121 (273)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEECTTCEE
T ss_pred             CEECCCCEECCceEECCCCEECCCCEECcccee
Confidence            667766666666666555555555555554443

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.56  E-value=2.4e-14  Score=117.11  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEe-----ccEEccCCEECCccEEcC
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~ig~~~~i~~  320 (358)
                      +...+++++.|+++++|.+++.||++|.|++++.|..    ++||++|.|+++|.|.     +++||++|.|+.++.|.+
T Consensus        11 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~   90 (173)
T 1xhd_A           11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (173)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             CCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeC
Confidence            4566777777777777777888899999999998873    8999999999999998     689999999999887765


Q ss_pred             ccEECCCcEECCceEE------c-CcEEccCceec--cCCCCCccc
Q 018327          321 MTILGEDVHVCDEIYS------N-GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i------~-~~~v~~~~~i~--~~~~~~~~~  357 (358)
                       ++||+++.||+++.+      + ++.+.+++.|.  +++|+++++
T Consensus        91 -~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  135 (173)
T 1xhd_A           91 -CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (173)
T ss_dssp             -CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             -CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence             666666666555554      3 56667777787  668888765

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.56  E-value=5.2e-14  Score=128.69  Aligned_cols=18  Identities=17%  Similarity=-0.038  Sum_probs=10.5

Q ss_pred             cEEccCceeccCC-CCCcc
Q 018327          339 GVVLPHKEIKSSI-LKPEI  356 (358)
Q Consensus       339 ~~v~~~~~i~~~~-~~~~~  356 (358)
                      +++..+..|.+++ |++++
T Consensus       305 ~vI~a~s~V~k~v~~~~~~  323 (372)
T 3pmo_A          305 VFVTGMTMVTRSITEPGSY  323 (372)
T ss_dssp             EEECTTCEECSCBCSCEEE
T ss_pred             CEEeeCCEEccCcCCCCcE
Confidence            4445556666676 55554

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.55  E-value=3.6e-14  Score=117.71  Aligned_cols=107  Identities=13%  Similarity=0.060  Sum_probs=81.6

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-e---eEECCCcEECCCcEE------------eccEEccCCEEC
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-R---CTVMRGVRIKKHACI------------SSSIIGWHSTVG  313 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~---~~i~~~~~i~~~~~i------------~~~~i~~~~~ig  313 (358)
                      ....+++++.|++++.|.+++.||++|.|++++.|. +   +.||++|.|++++.|            .+++||++|+|+
T Consensus        14 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig   93 (187)
T 3r3r_A           14 LFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVG   93 (187)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEEC
T ss_pred             cCcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEEC
Confidence            345566666666666676777788888888888887 3   489999999999999            558999999999


Q ss_pred             CccEEcCccEECCCcEECCceEEc-------CcEEccCceec--cCCCCCccc
Q 018327          314 QWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      .++.|.+ ++||+++.||+++.+.       ++.+++++.|.  +++|+++++
T Consensus        94 ~~~~i~~-~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv  145 (187)
T 3r3r_A           94 HKVMLHG-CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLY  145 (187)
T ss_dssp             TTCEEES-CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CCCEEeC-cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEE
Confidence            9988776 7777777777776652       45667777777  778887764

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.55  E-value=6e-14  Score=127.75  Aligned_cols=35  Identities=9%  Similarity=0.025  Sum_probs=17.2

Q ss_pred             cEECCCcEECCceEEc-------CcEEccCceeccCC-CCCcc
Q 018327          322 TILGEDVHVCDEIYSN-------GGVVLPHKEIKSSI-LKPEI  356 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~-~~~~~  356 (358)
                      +.||++|.||.++.+.       ++++..+..|.+++ |++.+
T Consensus       264 v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~~~  306 (357)
T 4e79_A          264 TKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGTY  306 (357)
T ss_dssp             CEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEE
T ss_pred             cEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCCcE
Confidence            4455555555554442       23334445556666 55543

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.55  E-value=8.7e-14  Score=127.23  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=18.5

Q ss_pred             ccEEccCCEECCccEEc----CccEECCCcEECCceEE
Q 018327          303 SSIIGWHSTVGQWARVE----NMTILGEDVHVCDEIYS  336 (358)
Q Consensus       303 ~~~i~~~~~ig~~~~i~----~~~~i~~~~~i~~~~~i  336 (358)
                      +++||++|.||++++|.    .+++||++++|++++.+
T Consensus       222 ~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I  259 (372)
T 3pmo_A          222 GVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMI  259 (372)
T ss_dssp             CEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEE
T ss_pred             CeEECCCCEECCCcEEccCcccceEECCCCEECCCCEE
Confidence            35666666666666664    23455555444444444

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.55  E-value=3e-14  Score=124.40  Aligned_cols=98  Identities=21%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEec---------cEEc
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SIIG  307 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~  307 (358)
                      +++++.|++.++|.+++.||++++|+++++|+.++.||++|.|.     .+.||++|.|+++++|.+         ++||
T Consensus       181 I~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IG  260 (347)
T 3r5d_A          181 VPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVG  260 (347)
T ss_dssp             CCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEEC
T ss_pred             ccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEEC
Confidence            45677777777777777777777777777777777777777764     378999999999999986         7999


Q ss_pred             cCCEECCccEEcCccEECCCcEECCceEEc-CcEE
Q 018327          308 WHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVV  341 (358)
Q Consensus       308 ~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v  341 (358)
                      ++|+||.++.|  ++.||++|+||+|++|. +..+
T Consensus       261 dnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          261 EGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             TTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             CCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            99999999999  69999999999999996 4444

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.55  E-value=1.8e-14  Score=131.21  Aligned_cols=191  Identities=16%  Similarity=0.150  Sum_probs=118.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHH-CCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .+||||+|.|+||+.   ..||+|+|++|+|||+|+++.+.+ .++++++|+++ ..+.+.+++.      ++.+.    
T Consensus         5 ~aIILAaG~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~------~v~~v----   70 (371)
T 1w55_A            5 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK------NYEFI----   70 (371)
T ss_dssp             EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS------SSEEE----
T ss_pred             EEEEECCCCCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC------CCEEE----
Confidence            589999999999974   579999999999999999999998 57999999998 5444433322      13332    


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~  155 (358)
                      ....|..++++.+++.+.  . +.+++++||.. . ...++++++.+.+.+  +.+.+   .++..+.....+.  ..+.
T Consensus        71 ~~g~g~~~sv~~aL~~l~--~-d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~~~d~vk~v~~t~~r--~~l~  143 (371)
T 1w55_A           71 EGGDTRAESLKKALELID--S-EFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALKVADTTLFDNEALQR--EKIK  143 (371)
T ss_dssp             ECCSSHHHHHHHHHTTCC--S-SEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEECCCSCEEETTEEECG--GGCC
T ss_pred             eCCCChHHHHHHHHHhcC--C-CeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEEeecCeeeeeeecCc--ccee
Confidence            223566789999988873  3 48999999983 3 345788888766542  23222   1110000000010  1110


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                      .. .            .-+.|+.+.+..+...... ..+....+.. ..++..+..++.|.|++||+||..++
T Consensus       144 ~~-~------------~P~~f~~~~l~~~~~~~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae  202 (371)
T 1w55_A          144 LI-Q------------TPQISKTKLLKKALDQNLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD  202 (371)
T ss_dssp             EE-C------------SCEEEEHHHHHHHTSSCCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred             ec-C------------CcceecHHHHHHHHHhccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence            00 0            1156777766544322211 2222222222 23566667677899999999997764

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.54  E-value=5.3e-14  Score=116.91  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             eEECCCCEECCCcEECCCcEECCCCEECCCcEEe-e---eEECCCcEECCCcEEecc------------EEccCCEECCc
Q 018327          252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-R---CTVMRGVRIKKHACISSS------------IIGWHSTVGQW  315 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~---~~i~~~~~i~~~~~i~~~------------~i~~~~~ig~~  315 (358)
                      ..+++++.|++++.|.+++.||++|.|++++.|. +   +.||++|.|++++.|..+            +||++|.|+++
T Consensus        20 ~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~   99 (189)
T 3r1w_A           20 PKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQ   99 (189)
T ss_dssp             CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTT
T ss_pred             CEECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCC
Confidence            4566666666666676777888888888888885 3   489999999999999865            99999999999


Q ss_pred             cEEcCccEECCCcEECCceEEc-------CcEEccCceec--cCCCCCccc
Q 018327          316 ARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       316 ~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      +.|.+ ++||+++.||+++.+.       ++.+++++.|.  +++|+++++
T Consensus       100 ~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv  149 (189)
T 3r1w_A          100 AMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVY  149 (189)
T ss_dssp             CEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEE
T ss_pred             CEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEE
Confidence            98776 7777777777766652       56777888888  678888765

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.54  E-value=9.6e-14  Score=121.53  Aligned_cols=80  Identities=21%  Similarity=0.339  Sum_probs=71.8

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE--------------eccE
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI--------------SSSI  305 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i--------------~~~~  305 (358)
                      .+++.+.|++++.|++++.|+++++|++++.||++|+|++++.|. ++.||++|.|+++++|              ..+.
T Consensus         6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~   85 (266)
T 3r0s_A            6 KIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVV   85 (266)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEE
Confidence            478899999999999999999999999999999999999999999 8999999999999999              4578


Q ss_pred             EccCCEECCccEEcC
Q 018327          306 IGWHSTVGQWARVEN  320 (358)
Q Consensus       306 i~~~~~ig~~~~i~~  320 (358)
                      ||++|.|+++++|..
T Consensus        86 IG~~~~Ig~~~~I~~  100 (266)
T 3r0s_A           86 IGKNATIREFATINS  100 (266)
T ss_dssp             ECTTCEECTTCEEEC
T ss_pred             ECCCCEECCceEecC
Confidence            898888888877763

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.54  E-value=5.1e-14  Score=119.25  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEec---------------cEEccC
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------------SIIGWH  309 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~---------------~~i~~~  309 (358)
                      ....+++++.|++++.|.+++.||++|.|+++|.|.     +++||++|.|+++|.|..               +.||++
T Consensus        38 ~~~~i~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~  117 (213)
T 3kwd_A           38 AEPEIAPTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN  117 (213)
T ss_dssp             CCCEECTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT
T ss_pred             CCCcCCCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC
Confidence            345666666667777776777777777777777775     368888999988888874               788999


Q ss_pred             CEECCccEEcCccEECCCcEECCceEEc------CcEEccCcee-------ccCCCCCccc
Q 018327          310 STVGQWARVENMTILGEDVHVCDEIYSN------GGVVLPHKEI-------KSSILKPEIV  357 (358)
Q Consensus       310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~------~~~v~~~~~i-------~~~~~~~~~~  357 (358)
                      |+|+.++.|.++++||+++.||+++.+.      ++.+++++.|       ...+|+++++
T Consensus       118 v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv  178 (213)
T 3kwd_A          118 VSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVI  178 (213)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEESCEECTTBEECTTCEE
T ss_pred             cEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEECCcEeCCCCEECCCcEE
Confidence            9999988888778888888888887753      4555666666       4556666554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.54  E-value=1.1e-13  Score=125.45  Aligned_cols=36  Identities=11%  Similarity=-0.065  Sum_probs=20.0

Q ss_pred             ccEECCCcEECCceEEc-------CcEEccCceeccCCC-CCcc
Q 018327          321 MTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSIL-KPEI  356 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~-~~~~  356 (358)
                      ++.||++|.||.++.+.       ++++..+..|.+|+| ++++
T Consensus       258 ~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~~  301 (341)
T 3eh0_A          258 SLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVY  301 (341)
T ss_dssp             TEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEEE
T ss_pred             CcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCeE
Confidence            34455555555554442       345566667777777 5444

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.53  E-value=9.6e-15  Score=129.01  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=58.0

Q ss_pred             cceEECCCCEECCCcEE--CCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-----cEEccCCEECCccEEcCc
Q 018327          250 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENM  321 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~  321 (358)
                      .++.|++++.||++++|  +.+++||++|+||++|.|. +++|++++.+++++.+..     ++||++|+||.+++|.++
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilgg  241 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGN  241 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESS
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCC
Confidence            33444444444444444  2344555555555555554 444555555555554443     599999999999999999


Q ss_pred             cEECCCcEECCceEEcC
Q 018327          322 TILGEDVHVCDEIYSNG  338 (358)
Q Consensus       322 ~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++++||++++|..
T Consensus       242 v~IG~~a~IGagsvV~~  258 (313)
T 3q1x_A          242 IIVGSHVRIGANCWIDR  258 (313)
T ss_dssp             CEECSSEEECTTCEECS
T ss_pred             cEECCCCEECCCCEECC
Confidence            99999999999999864

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.53  E-value=5.1e-14  Score=133.23  Aligned_cols=117  Identities=24%  Similarity=0.356  Sum_probs=77.2

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-----------------
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----------------  303 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-----------------  303 (358)
                      .+.+++.+.+++.||+++.|++++.|. ++.||++|.|+++|.|.++.||++|.|++++.|..                 
T Consensus       273 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~  351 (456)
T 2v0h_A          273 EIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIK  351 (456)
T ss_dssp             EECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred             EEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEe
Confidence            345566666666667777776666664 66677777777777666666666666665555542                 


Q ss_pred             ------------------cEEccCCEECCccEEcC-------ccEECCCcEECCceEEc-------CcEEccCceeccCC
Q 018327          304 ------------------SIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSI  351 (358)
Q Consensus       304 ------------------~~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~  351 (358)
                                        +.||++|+||+++.+.+       ++.||++|.||+++.+.       ++++++++.|.+++
T Consensus       352 ~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v  431 (456)
T 2v0h_A          352 KSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDV  431 (456)
T ss_dssp             SCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCB
T ss_pred             ccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCc
Confidence                              24566666666555543       46677777777666542       56778888999999


Q ss_pred             CCCcccC
Q 018327          352 LKPEIVM  358 (358)
Q Consensus       352 ~~~~~~~  358 (358)
                      |++++++
T Consensus       432 ~~~~~~~  438 (456)
T 2v0h_A          432 GENELVI  438 (456)
T ss_dssp             CTTCEEC
T ss_pred             CCCCEEE
Confidence            9998764

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.53  E-value=1.7e-13  Score=119.92  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE-------------ecc
Q 018327          239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI-------------SSS  304 (358)
Q Consensus       239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i-------------~~~  304 (358)
                      ...+++.+.+.+++.|++++.|+++++|++++.||++|.|++++.|. ++.||++|.|++++.|             .++
T Consensus         7 ~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~   86 (265)
T 4e6u_A            7 HDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWL   86 (265)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeE
Confidence            34577888899999999999999999999999999999999999998 7999999999999999             346


Q ss_pred             EEccCCEECCccEEc
Q 018327          305 IIGWHSTVGQWARVE  319 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~  319 (358)
                      .||+++.|+++++|.
T Consensus        87 ~IG~~~~Ig~~~~I~  101 (265)
T 4e6u_A           87 EIGNNNLIREHCSLH  101 (265)
T ss_dssp             EECSSCEECTTCEEE
T ss_pred             EECCCeEECCceEEC
Confidence            888888888777775

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.53  E-value=3.5e-14  Score=123.05  Aligned_cols=95  Identities=20%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEec---------cEEc
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SIIG  307 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i~  307 (358)
                      +++++.|++.++|.+++.|+++++|+++++|+.++.++.+|.|.     ++.||++|.|++++.|.+         +.||
T Consensus       158 I~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IG  237 (332)
T 3fsy_A          158 VPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIG  237 (332)
T ss_dssp             CCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEEC
T ss_pred             cCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEEC
Confidence            45777777777777777777777777777777777777777764     378999999999999986         8999


Q ss_pred             cCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          308 WHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       308 ~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++|+||.++.|  ++.||++|+||+|++|..
T Consensus       238 Dnv~IGanAtI--gVtIGd~~iIGAGSVVtk  266 (332)
T 3fsy_A          238 KRCLLGANSGL--GISLGDDCVVEAGLYVTA  266 (332)
T ss_dssp             TTCEECTTCEE--CSCBCSSCEECTTCEECT
T ss_pred             CCCEECCCCEE--eeEECCCCEECCCCEECC
Confidence            99999999999  599999999999999963

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.53  E-value=8.1e-14  Score=132.31  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             EccCCEECCccEEcC-------ccEECCCcEECCceE------Ec-CcEEccCceeccCCCCCcccC
Q 018327          306 IGWHSTVGQWARVEN-------MTILGEDVHVCDEIY------SN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       306 i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      ||++|.||.++.+.+       +++||++|.||+++.      |+ ++++++++.|.+++|++++++
T Consensus       380 Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~~~  446 (468)
T 1hm9_A          380 VGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAI  446 (468)
T ss_dssp             ECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             ccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCEEE
Confidence            444455555443322       355555555555544      53 677788889999999988763

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.52  E-value=2.9e-13  Score=118.09  Aligned_cols=78  Identities=22%  Similarity=0.376  Sum_probs=50.6

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE-------------ec-cEE
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI-------------SS-SII  306 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i-------------~~-~~i  306 (358)
                      +++.+.|.+++.|++++.|+++++|++++.||++|.|++++.|. ++.||++|.|+++|+|             .. +.|
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I   82 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI   82 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence            45666666666666666676766666666777777777777666 4667777777776666             22 456


Q ss_pred             ccCCEECCccEEc
Q 018327          307 GWHSTVGQWARVE  319 (358)
Q Consensus       307 ~~~~~ig~~~~i~  319 (358)
                      |++|.|++++.|.
T Consensus        83 G~~~~Ig~~~~I~   95 (259)
T 3hsq_A           83 GDHNIFREYSNIH   95 (259)
T ss_dssp             CSSCEECTTCEEE
T ss_pred             CCCcEECCCCEEC
Confidence            6666655555554

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.50  E-value=1.5e-13  Score=123.00  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccC----------C
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWH----------S  310 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~----------~  310 (358)
                      +.+++.|.+++.|++++.|++++.|+ +++|++++.|+++++|.+++|+++|.|+.++++.+ +.|+++          +
T Consensus        74 I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~  152 (334)
T 2pig_A           74 ITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQIL  152 (334)
T ss_dssp             ECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCE
T ss_pred             ECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCe
Confidence            44555555555555555555555554 55566666666666655555555555555554443 333222          3


Q ss_pred             EECCccEEcCccEECCCcEECCceEEcCcE
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSNGGV  340 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~  340 (358)
                      .|+++++|.. +.|+++|.|++++.+.+++
T Consensus       153 ~I~~~a~I~~-s~I~~g~~I~~~a~I~~sv  181 (334)
T 2pig_A          153 QIYDRATVNH-SRIVHQVQLYGNATITHAF  181 (334)
T ss_dssp             EECTTCEEES-CEEETTCEECTTCEEESEE
T ss_pred             EECCCCEEec-cEEcCCCEEcCCeEEeCcE
Confidence            3444444443 4444455555555544333

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.49  E-value=3.2e-13  Score=110.37  Aligned_cols=105  Identities=19%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             eEECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEe-----ccEEccCCEECCccEEcCcc
Q 018327          252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMT  322 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~ig~~~~i~~~~  322 (358)
                      ..+++++.|++++.+.+++.||++|.|++++.|..    +.||++|.|+++|.|.     +++||+++.|++++.|.+ +
T Consensus        11 ~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~   89 (173)
T 1v3w_A           11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG-A   89 (173)
T ss_dssp             CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES-C
T ss_pred             CEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECC-C
Confidence            44666666666666666777788888888887773    8899999999999998     478999999998887765 6


Q ss_pred             EECCCcEECCceE------Ec-CcEEccCceec--cCCCCCccc
Q 018327          323 ILGEDVHVCDEIY------SN-GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       323 ~i~~~~~i~~~~~------i~-~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      +||+++.||+++.      |+ ++.+++++.|.  +++|+++++
T Consensus        90 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v  133 (173)
T 1v3w_A           90 KVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             EECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEE
Confidence            6666666665555      42 56667777777  468887665

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.49  E-value=3e-13  Score=120.08  Aligned_cols=114  Identities=19%  Similarity=0.185  Sum_probs=79.7

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEcc--------CCEE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGW--------HSTV  312 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~--------~~~i  312 (358)
                      ..++.+.+++.|++++.||++++|.++ +++.++.||++|.|. +++|+++|.||++|.|.. +.|+.        ++.|
T Consensus       143 ~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~I  221 (316)
T 3tk8_A          143 AGGFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII  221 (316)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEE
T ss_pred             cCCcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEE
Confidence            356777777777777777777777644 777777777777777 577777777777777775 56666        6777


Q ss_pred             CCccEEcCccEECCCcEECCceEEc-CcEEccCceecc---------CCCCCccc
Q 018327          313 GQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKS---------SILKPEIV  357 (358)
Q Consensus       313 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~---------~~~~~~~~  357 (358)
                      |++|.|+.+++|+++++||++++|+ ++++.++..|..         ++|++++|
T Consensus       222 Gd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~~~~v~~g~Vp~gsvV  276 (316)
T 3tk8_A          222 EDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVTYGRIPAGSVV  276 (316)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             CCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccccccccccEeCCCCEE
Confidence            7777777777777777777777775 555555444322         56666554

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.49  E-value=3.3e-13  Score=119.49  Aligned_cols=93  Identities=23%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEcc--------CCEEC
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGW--------HSTVG  313 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~--------~~~ig  313 (358)
                      .++.+.+++.|++++.|+++++|.++ +|+.++.||++|.|. +++|++++.||++|.|.. +.++.        .+.||
T Consensus       128 ~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IG  206 (304)
T 3eg4_A          128 AGFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIE  206 (304)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEEC
T ss_pred             CCcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEc
Confidence            34445555555555555555555433 555555555555555 355555555555555554 34444        35555


Q ss_pred             CccEEcCccEECCCcEECCceEEc
Q 018327          314 QWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      ++|.|+.+++|..+++||++++|+
T Consensus       207 d~v~IG~~a~I~~gv~IG~~avIg  230 (304)
T 3eg4_A          207 DNCFIGARSEVVEGCIVREGSVLG  230 (304)
T ss_dssp             TTCEECTTCEECTTCEECTTCEEC
T ss_pred             CCCEECCCCEEcCCcEECCCcEEC
Confidence            555555555555555555555553

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.48  E-value=2.3e-13  Score=118.17  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=76.0

Q ss_pred             cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEecc-------------------
Q 018327          250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS-------------------  304 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~~-------------------  304 (358)
                      .++.|++++.|.++++|.  .++.||++|.|+.++.|.    ++.||++|.|+++|.|.++                   
T Consensus        84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~  163 (252)
T 3jqy_B           84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKD  163 (252)
T ss_dssp             CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCC
T ss_pred             CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCC
Confidence            445677777777777773  478999999999999998    8999999999999999885                   


Q ss_pred             -EEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          305 -IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       305 -~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                       +||++|+||+++.|.+++.||++++||+++++.+
T Consensus       164 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  198 (252)
T 3jqy_B          164 IIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTK  198 (252)
T ss_dssp             EEECSSCEECSSEEECTTCEECTTCEECTTCEECS
T ss_pred             eEEecCcEECCCCEECCCCEECCCCEECCCCEECc
Confidence             8999999999999998899999999999988864

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.48  E-value=1.1e-13  Score=131.05  Aligned_cols=104  Identities=17%  Similarity=0.244  Sum_probs=93.5

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccE
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~  323 (358)
                      +...+.+++.|++++.|+++++|.+++.||++|.|+++|.|.++.||++|.|+++|.|.++.||++|.||+++.|.++++
T Consensus       261 ~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~  340 (459)
T 4fce_A          261 SRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAE  340 (459)
T ss_dssp             GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCE
T ss_pred             CeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcE
Confidence            34557789999999999999999989999999999999999999999999999999999999999999999999998899


Q ss_pred             ECCCcEECCceEEcCcEEccCcee
Q 018327          324 LGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       324 i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      ||+++.||+++.+.++.+.++..+
T Consensus       341 ig~~~~Ig~~~~i~~~~i~~~~~i  364 (459)
T 4fce_A          341 LAEGAHVGNFVEIKKARLGKGSKA  364 (459)
T ss_dssp             ECTTCEEEEEEEEEEEEECTTCEE
T ss_pred             ECCCcEECCCeEEeeeEEcCCCEE
Confidence            999999999887766555555433

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.47  E-value=5.8e-13  Score=116.72  Aligned_cols=113  Identities=21%  Similarity=0.201  Sum_probs=72.0

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEcc--------CCEEC
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGW--------HSTVG  313 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~--------~~~ig  313 (358)
                      .+..+.+++.|++++.|++++.|.++ +++.++.||++|.|. +++|++++.||++|.|.. +.++.        .+.||
T Consensus       103 ~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IG  181 (276)
T 3gos_A          103 EGFRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE  181 (276)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEEC
T ss_pred             CCcEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEEC
Confidence            45666666666666666666666644 666677777777776 667777777777777765 45543        56666


Q ss_pred             CccEEcCccEECCCcEECCceEEc-CcEEccCceecc---------CCCCCccc
Q 018327          314 QWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKS---------SILKPEIV  357 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~---------~~~~~~~~  357 (358)
                      ++|.|+.+++|..+++||++++|+ ++++.++..|..         ++|++++|
T Consensus       182 d~v~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I~~~~~~~~~~g~Vp~~svv  235 (276)
T 3gos_A          182 DNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVV  235 (276)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccccccceeccccCCCcEE
Confidence            666666666666666666666664 555555444432         56666554

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.46  E-value=1.9e-13  Score=128.15  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCc
Q 018327          249 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  328 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~  328 (358)
                      .....+++++.|++++++.+++.||++|.|+++|.|.+++||++|.|+++|+|.+++||++|+|+.++.+.+ ++||++|
T Consensus       271 ~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~g-v~IGd~v  349 (496)
T 3c8v_A          271 ASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIIN-AHLGDMI  349 (496)
T ss_dssp             -----CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEES-EEEEETC
T ss_pred             ccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcC-ceECCCc
Confidence            345677888888888888889999999999999999999999999999999999999999999999988876 7777777


Q ss_pred             EECCceEEcC-----------cEEccCceec----cCCCCCccc
Q 018327          329 HVCDEIYSNG-----------GVVLPHKEIK----SSILKPEIV  357 (358)
Q Consensus       329 ~i~~~~~i~~-----------~~v~~~~~i~----~~~~~~~~~  357 (358)
                      .||+++.|.+           +.+++++.|.    .++|+++++
T Consensus       350 ~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v  393 (496)
T 3c8v_A          350 FTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLV  393 (496)
T ss_dssp             EECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEE
T ss_pred             EECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEE
Confidence            7777766643           4456667777    678887665

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.46  E-value=4.1e-13  Score=120.19  Aligned_cols=82  Identities=20%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             cCCcEEec-ceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc
Q 018327          243 ATGANIVG-NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  321 (358)
Q Consensus       243 ~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~  321 (358)
                      ...+.+.+ ++.+++++.|++++.|.+++.||++|+||++|+|.+|.|++++.|+++++|++++|+++|.|+.++++.++
T Consensus        56 ~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           56 QGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             SSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             CCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            45567777 77888888888888888888888888888888888888888888888888888888888887777777766


Q ss_pred             cEE
Q 018327          322 TIL  324 (358)
Q Consensus       322 ~~i  324 (358)
                      +.|
T Consensus       136 s~I  138 (334)
T 2pig_A          136 SEI  138 (334)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            664

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.46  E-value=1.3e-13  Score=121.54  Aligned_cols=99  Identities=20%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             EecceEECCCCEECCCcEE--CCCcEECCCCEECCCcEEe-eeEECCCcEECCC------cEEeccEEccCCEECCccEE
Q 018327          248 IVGNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH------ACISSSIIGWHSTVGQWARV  318 (358)
Q Consensus       248 i~~~~~i~~~~~i~~~~~i--~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~------~~i~~~~i~~~~~ig~~~~i  318 (358)
                      ...++.|+|++.||+++.|  +.+++||++|+||++|.|. ++.|+.++.....      ..-.+++||++|+||++++|
T Consensus       187 ~~~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~I  266 (310)
T 3f1x_A          187 SETGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATI  266 (310)
T ss_dssp             HHHSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEE
T ss_pred             ccCCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEE
Confidence            3455666666666666666  4556666666666666553 3333333311110      01123589999999999999


Q ss_pred             cCccEECCCcEECCceEEcCcEEccCcee
Q 018327          319 ENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      .++++||++++||++++|... +.|+..+
T Consensus       267 l~gv~IGd~a~IGagsvV~~d-Vp~~svv  294 (310)
T 3f1x_A          267 LGRVTIGKGATVGGNIWVTEN-VPAGSRI  294 (310)
T ss_dssp             ESSCEECTTCEECSSCEECSC-BCTTCEE
T ss_pred             CCCcEECCCCEECCCCEECCc-cCCCcEE
Confidence            998999999999999888642 3344433

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.46  E-value=1e-12  Score=109.45  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             CCcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEc
Q 018327          244 TGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE  319 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~  319 (358)
                      ..+.+++++.+++++.|+  ++++|.++++|+++++||++|.|. +++|++++.||++|.|.. +.|..++.||+++.|.
T Consensus        74 ~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig  153 (194)
T 3bfp_A           74 IVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLG  153 (194)
T ss_dssp             BCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEc
Confidence            346788889999899999  899998888998889999988887 788888888888888875 7777777777777777


Q ss_pred             CccEECCCcEECCceEEcCcEEccCceeccCCCCCcccC
Q 018327          320 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       320 ~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      .+++|..+++||+++++     ++++.|.+++|++++++
T Consensus       154 ~~~~i~~~~~Ig~~~~I-----gagsvv~~~v~~~~~~~  187 (194)
T 3bfp_A          154 INSCVLPNLSLADDSIL-----GGGATLVKNQDEKGVFV  187 (194)
T ss_dssp             TTCEECTTCEECTTCEE-----CTTCEECSCBCSCCEEC
T ss_pred             CCCEECCCCEECCCCEE-----CCCCEEccccCCCCEEE
Confidence            77777777666666665     45677788899887763

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.46  E-value=3e-13  Score=125.80  Aligned_cols=97  Identities=12%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-------------------
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------------  302 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-------------------  302 (358)
                      +.+++.|.+++.||+++.|++++.| .+++|++++.|+.++.|.+++||++|.|++++.|.                   
T Consensus       271 I~~~~~i~~~~~Ig~~~~ig~~~~i-~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~  349 (401)
T 2ggo_A          271 IGPNSYLRPYTILVEKNKIGASVEV-KESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRIS  349 (401)
T ss_dssp             ECSSCEECTTEEECSSCEEEETCEE-ESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEE
T ss_pred             ECCCCEEcCCcEECCCCEECCCCEE-ecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEE
Confidence            3444455555556666666666666 47777888888888888888888888888888887                   


Q ss_pred             ------ccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          303 ------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       303 ------~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                            +++||++|+||.++.|.+++.||++++|++++.+.+.
T Consensus       350 ~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~  392 (401)
T 2ggo_A          350 SGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD  392 (401)
T ss_dssp             CSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc
Confidence                  5788888888888888888888888888888888654

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.45  E-value=5.9e-13  Score=112.82  Aligned_cols=87  Identities=11%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             eEECCCCEECCCcEECC---CcEECCCCEECCCcEE----eeeEECCCcEECCCcEEecc--------------------
Q 018327          252 VLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL----SRCTVMRGVRIKKHACISSS--------------------  304 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i----~~~~i~~~~~i~~~~~i~~~--------------------  304 (358)
                      +.|++++.|++++.+..   ++.||++|.|++++.+    .+++||++|.|+++++|.++                    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            77788888888777752   4889999999986555    57899999999999999863                    


Q ss_pred             EEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +||++|+||.++.|.+++.||++++|++++++..
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~  172 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK  172 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence            7888888888888888888888888888888764

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.45  E-value=1.1e-12  Score=120.58  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             ccCCcEEecceEECCCCEECCCcEEC------CCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe------------
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIG------PDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS------------  302 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~------~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~------------  302 (358)
                      +++++.|.++++|++++.||+++.|+      .++.||++|.|+.+|.|. ++.||++|.|+++++|.            
T Consensus       139 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~  218 (374)
T 2iu8_A          139 IEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFG  218 (374)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTT
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCC
Confidence            33444444444444444444444443      344444444444444443 45566666666666663            


Q ss_pred             ---------ccEEccCCEECCccEEc
Q 018327          303 ---------SSIIGWHSTVGQWARVE  319 (358)
Q Consensus       303 ---------~~~i~~~~~ig~~~~i~  319 (358)
                               .++||++|+||++++|.
T Consensus       219 ~~~~i~~~g~v~Ig~~v~IG~~~~I~  244 (374)
T 2iu8_A          219 QHKHLKHLGKVIIEDDVEIGANTTID  244 (374)
T ss_dssp             EEEECCCCCCEEECTTCEECTTCEEE
T ss_pred             ceeEeeeeccEEECCCCEECCCcEEc
Confidence                     25677777777777663

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.44  E-value=4.8e-13  Score=116.09  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             cceEECCCCEECCCcEE----CCCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEe----ccEEccCCEECCccEE
Q 018327          250 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----SSIIGWHSTVGQWARV  318 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~----~~~i~~~~~ig~~~~i  318 (358)
                      ..+.|++++.+.+.+.+    ..++.||++|.|++++.|.   ++.||++|.|+++|.|.    ++.||++|.||+++.|
T Consensus        62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I  141 (252)
T 3jqy_B           62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVIL  141 (252)
T ss_dssp             CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEE
T ss_pred             CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEE
Confidence            45666777766665555    3466788888888888884   68899999999999998    6899999999988866


Q ss_pred             cCc-------------------cEECCCcEECCc------eEEc-CcEEccCceeccCCCCCccc
Q 018327          319 ENM-------------------TILGEDVHVCDE------IYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       319 ~~~-------------------~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      .+.                   ++||++|.||++      +.|+ ++.+++++.|.+++|+++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~~  206 (252)
T 3jqy_B          142 RASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAA  206 (252)
T ss_dssp             ECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             ecCCCcccccccccccccccCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCCEE
Confidence            543                   355555555554      4553 67788999999999998765

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.44  E-value=1.5e-13  Score=119.45  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             ecceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEE---eccEEccCCEECCccEEcCccE
Q 018327          249 VGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI---SSSIIGWHSTVGQWARVENMTI  323 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~ig~~~~i~~~~~  323 (358)
                      ..++.|++++.||++++|.  .+++||++|+||++|.|     +++|+|+.....   ..++||++|+||.+++|.++++
T Consensus       162 ~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I-----~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~  236 (287)
T 3mc4_A          162 IFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSI-----LHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQ  236 (287)
T ss_dssp             HTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEE-----ETTCEEEC-----CCCSCEECTTCEECTTCEEESSCE
T ss_pred             ccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEE-----cCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcE
Confidence            3455666666666666665  45555555555555555     333444332222   2368888999999999998899


Q ss_pred             ECCCcEECCceEEcC
Q 018327          324 LGEDVHVCDEIYSNG  338 (358)
Q Consensus       324 i~~~~~i~~~~~i~~  338 (358)
                      ||++++||++++|..
T Consensus       237 IG~~a~IGagsvV~k  251 (287)
T 3mc4_A          237 VGQCSKIAAGSVVLK  251 (287)
T ss_dssp             ECTTCEECTTCEECS
T ss_pred             ECCCCEECCCCEEcc
Confidence            999999999888864

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.44  E-value=8.1e-13  Score=114.32  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             eEECCCCEECCCcEECCCcEECCCCEECCCcEEee-----eEECCCcEECCCcEEe------------------------
Q 018327          252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACIS------------------------  302 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~------------------------  302 (358)
                      ..|++++.|++++.|.+++.||++|.|+++|.|..     ++||++|.|+++|.|.                        
T Consensus        60 ~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~  139 (247)
T 1qre_A           60 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY  139 (247)
T ss_dssp             CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred             cEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccC
Confidence            33444444444444444555555555555555542     1566666666666664                        


Q ss_pred             ccEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327          303 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  336 (358)
Q Consensus       303 ~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i  336 (358)
                      +++||++|.||+++.|.++++||++|.||+++.+
T Consensus       140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I  173 (247)
T 1qre_A          140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFV  173 (247)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEE
T ss_pred             ceEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            2566777777776666655666666666666544

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.43  E-value=7.6e-13  Score=110.20  Aligned_cols=35  Identities=14%  Similarity=0.083  Sum_probs=26.9

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++|+||.++.|.+++.||++++||+++++..
T Consensus       133 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  167 (195)
T 3nz2_A          133 IVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQ  167 (195)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCCCEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            47788888888888877788888888877777754

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.42  E-value=7.9e-13  Score=110.43  Aligned_cols=52  Identities=17%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             eEECCCcEECCCcEEe------------------c-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          287 CTVMRGVRIKKHACIS------------------S-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~------------------~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++|.|+++|.|.                  + ++||++|+||.++.|.+++.||++++||+++++..
T Consensus        95 v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A           95 ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             EEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECc
Confidence            3667777777777662                  2 47888888888888888888888888888888764

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.42  E-value=2.2e-12  Score=107.01  Aligned_cols=53  Identities=13%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             eEECCCcEECCCcEEec-------------------cEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          287 CTVMRGVRIKKHACISS-------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       287 ~~i~~~~~i~~~~~i~~-------------------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      +.||++|.|+++|.|.+                   +.||++|+||.++.|.+++.||++++||+++++...
T Consensus        99 v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  170 (190)
T 3hjj_A           99 VRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD  170 (190)
T ss_dssp             EEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             eEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc
Confidence            35666666666666632                   478888888888888888888888888888777643

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.42  E-value=2.1e-12  Score=112.95  Aligned_cols=59  Identities=29%  Similarity=0.466  Sum_probs=26.3

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  301 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i  301 (358)
                      .+.+.+.+++.|++++.|+++++|++++.||++|.|+++|.|. ++.||++|.|++++.|
T Consensus         9 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I   68 (262)
T 2qia_A            9 HPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI   68 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEE
Confidence            3344444444444444444444444444444444444444444 4444444444444444

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=99.41  E-value=1.2e-12  Score=122.55  Aligned_cols=177  Identities=19%  Similarity=0.208  Sum_probs=122.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHHCCCC-----EEEEEecc-ChHHHHHHHH-hhhhccCc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAVGVT-----EVVLAINY-QPEVMLNFLK-EFEAKLGI   73 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~~gi~-----~i~vv~~~-~~~~i~~~l~-~~~~~~~~   73 (358)
                      .+||||||.|+||+.   ..||+|+|++ |+|++++.++++.+.+..     .+++.++. ..+.+++|++ +. +.+|+
T Consensus        77 avViLAGGlGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~-~~fGl  152 (505)
T 2oeg_A           77 VVLKLNGGLGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARY-PWLYQ  152 (505)
T ss_dssp             EEEEEECCCCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHC-HHHHT
T ss_pred             eEEEEcCCcccccCC---CCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-hccCC
Confidence            589999999999994   7999999999 999999999999988633     45555554 5788999998 52 22233


Q ss_pred             ---EEE-E---------------e-------ccCCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeec-cCHHHH
Q 018327           74 ---KII-C---------------S-------QETEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISE-YPFAEM  121 (358)
Q Consensus        74 ---~i~-~---------------~-------~~~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~-~~l~~~  121 (358)
                         .+. +               +       ....|.|+++.+...     ++.+.....+++++.++|.+.. .|+ .+
T Consensus       153 ~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~l  231 (505)
T 2oeg_A          153 VFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-RV  231 (505)
T ss_dssp             TCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-HH
T ss_pred             CccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-HH
Confidence               121 1               0       123356999887644     3333222234999999999764 456 89


Q ss_pred             HHHHHhcCCeeEEEe---cCC-CCeeeEEEc------CCCCc---------EEEEeecCCC--------CCCCeEEEEEE
Q 018327          122 IEFHKAHGGEASIMV---DEP-SKYGVVVME------ESTGK---------VEKFVEKPKL--------FVGNKINAGIY  174 (358)
Q Consensus       122 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~d------~~~~~---------v~~~~ek~~~--------~~~~~~~~Giy  174 (358)
                      +..|.+++.++++.+   ..+ ..+|++..+      .+ |+         +.++.+-|..        ..-.+.++...
T Consensus       232 lg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~d-g~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~  310 (505)
T 2oeg_A          232 LAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKD-GQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNL  310 (505)
T ss_dssp             HHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSS-SCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEE
T ss_pred             HHHHHhcCCcEEEEEEEecCCccceeEEEEecccccccC-CccccccCceeEEEeccCChhhhhcccCccccCeeEEEEE
Confidence            999999999888887   444 578888763      33 66         4444444432        12335788889


Q ss_pred             EEChhhhhhc
Q 018327          175 LLNPAVLDRI  184 (358)
Q Consensus       175 ~~~~~~l~~l  184 (358)
                      +|+-+.++.+
T Consensus       311 ~~~l~~l~~~  320 (505)
T 2oeg_A          311 WIRLPVLLET  320 (505)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9998877654

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.41  E-value=1.5e-12  Score=115.01  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=39.3

Q ss_pred             CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE
Q 018327          238 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  301 (358)
Q Consensus       238 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i  301 (358)
                      ....+++.+.|.+++.|++++.|+++++|++++.||++|.|++++.|. ++.||++|.|+++|.|
T Consensus        21 ~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   85 (283)
T 4eqy_A           21 SMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV   85 (283)
T ss_dssp             --CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred             CCcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence            344466666776666666666666666666666666666666666665 5555555555555555

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.41  E-value=2.7e-12  Score=112.37  Aligned_cols=50  Identities=12%  Similarity=0.242  Sum_probs=24.5

Q ss_pred             eeEECCCcEECCCcEEe--------ccEEccCCEECCccEEcCccEECCCcEECCceE
Q 018327          286 RCTVMRGVRIKKHACIS--------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIY  335 (358)
Q Consensus       286 ~~~i~~~~~i~~~~~i~--------~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~  335 (358)
                      +++||+++.|++++.|.        .+.||+++.|+.++.|..+++||+++.|++++.
T Consensus        79 ~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~  136 (270)
T 1j2z_A           79 ELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVT  136 (270)
T ss_dssp             EEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             ceEECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCcc
Confidence            34444555555555544        245555555555555544455555444444433

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.40  E-value=9e-13  Score=118.66  Aligned_cols=127  Identities=18%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             eecCeEEecCC--HHHHHHHHHHHHHhhc---c----cCcc---cc-c-CCcEEecceEECCCCEECCCcEECCC-cEEC
Q 018327          209 VLPGFWMDIGQ--PRDYITGLRLYLDSLR---K----KSSL---KL-A-TGANIVGNVLVHESAQIGEGCLIGPD-VAVG  273 (358)
Q Consensus       209 ~~~~~~~di~t--~~dy~~a~~~~l~~~~---~----~~~~---~~-~-~~~~i~~~~~i~~~~~i~~~~~i~~~-~~ig  273 (358)
                      ....+|.+.++  |++|......+..+-.   .    ..+.   .+ . .++.|.+++.|++++.||++++|+++ ++|+
T Consensus       167 l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig  246 (387)
T 2rij_A          167 LSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVN  246 (387)
T ss_dssp             SCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEEC
T ss_pred             CceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEEC
Confidence            34568999988  7788777766653210   0    0111   11 1 26666666666666666666666664 6666


Q ss_pred             CCCE-ECCCcEE----e-eeEECCCcEECCCcEE----ec-----cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          274 PGCV-VESGVRL----S-RCTVMRGVRIKKHACI----SS-----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       274 ~~~~-ig~~~~i----~-~~~i~~~~~i~~~~~i----~~-----~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .++. ||+ |.|    + +++||++|.|++++.|    .+     ++||++|+||.++.  +++.||++|+||++++|..
T Consensus       247 ~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~  323 (387)
T 2rij_A          247 FNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLE  323 (387)
T ss_dssp             TTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECT
T ss_pred             CCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECC
Confidence            6666 665 544    4 5788888888888864    33     68999999999998  6699999999999999864

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.40  E-value=1.4e-12  Score=108.62  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=57.3

Q ss_pred             ECCCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEecc-E------EccCCEECCccEEcCccEECCCcEECCceE
Q 018327          266 IGPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISSS-I------IGWHSTVGQWARVENMTILGEDVHVCDEIY  335 (358)
Q Consensus       266 i~~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~~-~------i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~  335 (358)
                      ++.++.||++|.|+.+|.|.   ..+||++|.|+++|.|... .      ...++.++..++|+++|+||.+++|.+++.
T Consensus        73 ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~  152 (195)
T 3nz2_A           73 FGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVT  152 (195)
T ss_dssp             CSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCE
T ss_pred             eCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCE
Confidence            33444445555555555553   2377888888888888763 2      223344455556666666666666666666


Q ss_pred             Ec-CcEEccCceeccCCCCCccc
Q 018327          336 SN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       336 i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      |+ ++++++++.|.+|+|+++++
T Consensus       153 IG~~~vIgagsvV~~dvp~~~v~  175 (195)
T 3nz2_A          153 IGARSVVAANSVVNQDVPPDTLV  175 (195)
T ss_dssp             ECTTCEECTTCEECSCBCSSEEE
T ss_pred             ECCCCEECCCCEEccccCCCcEE
Confidence            64 66677788888999988765

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.39  E-value=2e-12  Score=106.96  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             CcEECCCCEECCCcEEe---eeEECCCcEECCCcEE-------------------eccEEccCCEECCccEEcCccEECC
Q 018327          269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACI-------------------SSSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i-------------------~~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      ++.||+++.|+.+|.|.   ...||++|.|+++|.|                   ..++||++|+||.++.|.++++||+
T Consensus        76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~  155 (188)
T 3srt_A           76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD  155 (188)
T ss_dssp             TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred             CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence            44444444444444443   2367888888888887                   2367888888888888888888888


Q ss_pred             CcEECCceEEcCc
Q 018327          327 DVHVCDEIYSNGG  339 (358)
Q Consensus       327 ~~~i~~~~~i~~~  339 (358)
                      +++||+++++...
T Consensus       156 ~~vIgagsvV~~d  168 (188)
T 3srt_A          156 NVVIGAGSVVTKD  168 (188)
T ss_dssp             SEEECTTCEECSC
T ss_pred             CCEECCCCEECcc
Confidence            8888888877643

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.39  E-value=2.1e-12  Score=109.36  Aligned_cols=108  Identities=14%  Similarity=0.139  Sum_probs=81.1

Q ss_pred             cceEECCCCEECCC-cEECC---CcEECCCCEECCCcEEe----eeEECCCcEECCCcEE----eccEEccCCEECCccE
Q 018327          250 GNVLVHESAQIGEG-CLIGP---DVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI----SSSIIGWHSTVGQWAR  317 (358)
Q Consensus       250 ~~~~i~~~~~i~~~-~~i~~---~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i----~~~~i~~~~~ig~~~~  317 (358)
                      ..+++++++.|.+. +.|.+   ++.||++|.|++++.|.    ++.||++|.|++++.+    .+++||++|.|++++.
T Consensus        35 ~~v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~  114 (215)
T 2wlg_A           35 NSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYE  114 (215)
T ss_dssp             CEEEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEE
T ss_pred             CEEEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEE
Confidence            45788888888777 56654   38899999999988886    3889999999985555    4578899999988888


Q ss_pred             EcCc-------------------cEECCCcEECCce------EEc-CcEEccCceeccCCCCCccc
Q 018327          318 VENM-------------------TILGEDVHVCDEI------YSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       318 i~~~-------------------~~i~~~~~i~~~~------~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      |...                   ++||+++.||+++      .|+ ++.+.+++.|.+++|+++++
T Consensus       115 I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~  180 (215)
T 2wlg_A          115 IRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCV  180 (215)
T ss_dssp             EESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCE
T ss_pred             EECCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEE
Confidence            7752                   3555555555554      453 67778899999999998775

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.37  E-value=2e-12  Score=106.51  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             CcEECCCCEECCCcEE---eeeEECCCcEECCCcEEe-------------------ccEEccCCEECCccEEcCccEECC
Q 018327          269 DVAVGPGCVVESGVRL---SRCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i---~~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      ++.||+++.|+.+|.|   .+..||++|.|+++|.|.                   ++.||++|+||.++.|.++++||+
T Consensus        74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~  153 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGD  153 (185)
T ss_dssp             TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECT
T ss_pred             CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECC
Confidence            3333444444444444   245667777777777773                   368899999999999998899999


Q ss_pred             CcEECCceEEcCcEEccCce
Q 018327          327 DVHVCDEIYSNGGVVLPHKE  346 (358)
Q Consensus       327 ~~~i~~~~~i~~~~v~~~~~  346 (358)
                      +++||+++++... +.++..
T Consensus       154 ~~vIgagsvV~~~-vp~~~v  172 (185)
T 2p2o_A          154 NAVIASGAVVTKD-VPANAV  172 (185)
T ss_dssp             TCEECTTCEECSC-BCTTEE
T ss_pred             CCEECCCCEECCC-CCCCcE
Confidence            9999998888654 334433

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.36  E-value=3.7e-12  Score=121.78  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec--------cEEccCCEECC
Q 018327          243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS--------SIIGWHSTVGQ  314 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~  314 (358)
                      .+.+.+.+++.+++++.||.++.+ .+++||++|+|+..+.+++++||++|.||.++.+.+        ++||++|.||.
T Consensus       344 g~~~~i~~~~~i~~~v~IG~~v~i-k~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~  422 (501)
T 3st8_A          344 GPFTYLRPGTALGADGKLGAFVEV-KNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGS  422 (501)
T ss_dssp             CSSEEECTTCEECTTCEEEETEEE-ESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECT
T ss_pred             CCceeecCCcEEccccccCCeEEE-ccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECC
Confidence            344444444555555555555555 488999999999999999999999999999999965        78999999999


Q ss_pred             ccEEcCccEECCCcEECCceEEcCcEEccCce
Q 018327          315 WARVENMTILGEDVHVCDEIYSNGGVVLPHKE  346 (358)
Q Consensus       315 ~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~  346 (358)
                      ++.|.+++.||+++.||+++.|... |-|++.
T Consensus       423 ~~~l~~~v~Ig~~~~i~ags~v~~d-vp~~~l  453 (501)
T 3st8_A          423 DTMFVAPVTIGDGAYTGAGTVVRED-VPPGAL  453 (501)
T ss_dssp             TCEEESSEEECTTCEECTTCEECSC-BCTTCE
T ss_pred             CCEEcCCcEECCCCEECCCCEECcc-cCCCCe
Confidence            9999999999999999999999753 345554

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.35  E-value=3e-12  Score=105.13  Aligned_cols=54  Identities=15%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             eeEECCCcEECCCcEEe-------------------ccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327          286 RCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  339 (358)
Q Consensus       286 ~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~  339 (358)
                      ...||++|.|+++|.|.                   ++.||++|+||.++.|.+++.||++++||+++.+...
T Consensus        92 ~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d  164 (182)
T 1ocx_A           92 PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD  164 (182)
T ss_dssp             CEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc
Confidence            34677777777777773                   3688888888888888888888888888888888654

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.35  E-value=1.4e-12  Score=113.68  Aligned_cols=83  Identities=19%  Similarity=0.277  Sum_probs=51.2

Q ss_pred             ceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCccEEC
Q 018327          251 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILG  325 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i~  325 (358)
                      ++.|+|++.||++++|.  .+++||++|+||++|.|     +++|+|+....   ..+++||++|+||.+++|.++++||
T Consensus       157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I-----~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG  231 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSI-----LQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVG  231 (289)
T ss_dssp             SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred             ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEE-----cCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEEC
Confidence            44555555555555554  24444444444444444     33333332211   1236888899999999988888999


Q ss_pred             CCcEECCceEEcC
Q 018327          326 EDVHVCDEIYSNG  338 (358)
Q Consensus       326 ~~~~i~~~~~i~~  338 (358)
                      ++++||+++++..
T Consensus       232 ~~a~IGagsvV~~  244 (289)
T 1t3d_A          232 RGAKIGAGSVVLQ  244 (289)
T ss_dssp             TTCEECTTCEECS
T ss_pred             CCCEECCCCEEcc
Confidence            9999988888854

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=99.34  E-value=2.5e-11  Score=110.26  Aligned_cols=179  Identities=21%  Similarity=0.226  Sum_probs=129.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHH-------------CCCCEEEEEeccChHHHHHHHH
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKA-------------VGVTEVVLAINYQPEVMLNFLK   65 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~-------------~gi~~i~vv~~~~~~~i~~~l~   65 (358)
                      .+|+||+|.|+||+.   ..||+|+|+   .|+|+++++++.+.+             .++..+++...+..+.+++|++
T Consensus        37 avvlLAGG~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~  113 (405)
T 3oc9_A           37 ALITPAGGQGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK  113 (405)
T ss_dssp             EEEEECCSBCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred             EEEEecCCCcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence            368899999999966   899999999   899999999988864             4677667666677899999998


Q ss_pred             hhhhccCc---EEEEec---------------------cCCcCCCchHHHHHH-----hhccCCCCCcEEEEeCCe-eec
Q 018327           66 EFEAKLGI---KIICSQ---------------------ETEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDV-ISE  115 (358)
Q Consensus        66 ~~~~~~~~---~i~~~~---------------------~~~~~g~~~sl~~~~-----~~i~~~~~~~~lv~~gD~-i~~  115 (358)
                      +. +.+|+   .+.+..                     ...|.|+++......     +.+....-+.+++.++|. +..
T Consensus       114 ~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~  192 (405)
T 3oc9_A          114 EH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCK  192 (405)
T ss_dssp             HT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCC
T ss_pred             hC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccc
Confidence            73 33343   233222                     234568877555432     222222223889999999 666


Q ss_pred             cCHHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEE-cCCCCcEEEEeecCCC--C-------CCCeEEEEEEEEChhhh
Q 018327          116 YPFAEMIEFHKAHGGEASIMV---DEP-SKYGVVVM-EESTGKVEKFVEKPKL--F-------VGNKINAGIYLLNPAVL  181 (358)
Q Consensus       116 ~~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~-d~~~~~v~~~~ek~~~--~-------~~~~~~~Giy~~~~~~l  181 (358)
                      .....++..|.+++.++++.+   ..+ ...|.+.. |.. -+|.++.+.|..  .       .-+..+.++++|+.+++
T Consensus       193 ~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~-~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs~~fL  271 (405)
T 3oc9_A          193 DVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQER-IKVVEYTELTDELNKQLSNGEFIYNCGHISINGYSTSFL  271 (405)
T ss_dssp             SSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTE-EEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEEHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCe-eEEEEEeeCCHHHhhcCCCCceeeccceeEeeecCHHHH
Confidence            677899999999999988777   444 77888875 433 468888876653  1       23357899999999999


Q ss_pred             hhcc
Q 018327          182 DRIE  185 (358)
Q Consensus       182 ~~l~  185 (358)
                      +.+.
T Consensus       272 ~~i~  275 (405)
T 3oc9_A          272 EKAA  275 (405)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8664

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.34  E-value=6.3e-12  Score=104.68  Aligned_cols=70  Identities=13%  Similarity=0.197  Sum_probs=44.9

Q ss_pred             CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEe-------------------ccEEccCCEECCccEEcCccEECC
Q 018327          269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS-------------------SSIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      ++.||++|.|+.+|.|.   .+.||++|.|+++|.|.                   +++||++|+||.++.|.+++.||+
T Consensus        75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~  154 (203)
T 1krr_A           75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  154 (203)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             CeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence            34444444444444443   24566666666666553                   257888888888888887788888


Q ss_pred             CcEECCceEEcC
Q 018327          327 DVHVCDEIYSNG  338 (358)
Q Consensus       327 ~~~i~~~~~i~~  338 (358)
                      +++||+++++..
T Consensus       155 ~~vIgagsvV~~  166 (203)
T 1krr_A          155 NSVIGAGSIVTK  166 (203)
T ss_dssp             TCEECTTCEECS
T ss_pred             CCEECCCCEECC
Confidence            888888877754

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.34  E-value=1.6e-12  Score=110.44  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=58.6

Q ss_pred             CCcEEecceEECCCCEECCCcEEC-CCcEECCCCEECCCcEEe-eeEECCCcEECCCcEE--------------------
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIG-PDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI--------------------  301 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~-~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i--------------------  301 (358)
                      +.+....++.+++++.||++++|+ .+..+.++|+|+.++.|+ +++||++|.|+++++|                    
T Consensus        22 ~~~~~~~~~v~~~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~  101 (220)
T 4hur_A           22 RNLQFIKPTITNENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFR  101 (220)
T ss_dssp             SSEEESGGGCCSTTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGC
T ss_pred             CceEEecceEECCCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeec
Confidence            344455666677777777777662 122222333344333333 2344555555555543                    


Q ss_pred             ----------------eccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          302 ----------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       302 ----------------~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                                      .+++||++|+||.++.|.+++.||++++||+++.|..
T Consensus       102 ~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~  154 (220)
T 4hur_A          102 MGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  154 (220)
T ss_dssp             TTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccccccccccccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcc
Confidence                            2357888888888888888888888888888888764

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=99.33  E-value=1.3e-11  Score=115.80  Aligned_cols=178  Identities=19%  Similarity=0.236  Sum_probs=125.8

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------C------CCEEEEEeccChHHHHHH
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------G------VTEVVLAINYQPEVMLNF   63 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------g------i~~i~vv~~~~~~~i~~~   63 (358)
                      |.+|+||||.|+||+.   ..||+|+|++   |+|+++++++.+.+.        |      +..+++...+..+.+++|
T Consensus       104 vavvlLaGG~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~  180 (486)
T 2yqc_A          104 VAVLLMAGGQGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESF  180 (486)
T ss_dssp             EEEEEEEESBCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHH
T ss_pred             eEEEEEcCCccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHH
Confidence            4689999999999954   7899999999   999999999999886        6      778888888888889999


Q ss_pred             HHhhhhccCcE---EEEec----------------------cCCcCCCchHHHHHH-----hhccCCCCCcEEEEeCCee
Q 018327           64 LKEFEAKLGIK---IICSQ----------------------ETEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSDVI  113 (358)
Q Consensus        64 l~~~~~~~~~~---i~~~~----------------------~~~~~g~~~sl~~~~-----~~i~~~~~~~~lv~~gD~i  113 (358)
                      +++. +.+|+.   +.+..                      ...|.|+++.+....     +.+....-+.+.+...|.+
T Consensus       181 ~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~  259 (486)
T 2yqc_A          181 FIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNC  259 (486)
T ss_dssp             HHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBT
T ss_pred             Hhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCc
Confidence            9872 333432   22111                      113668887665442     2222222238888899985


Q ss_pred             ec--cCHHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEEcCCCC--cEEEEeecCCC------------CCCCeEEEEE
Q 018327          114 SE--YPFAEMIEFHKAHGGEASIMV---DEP-SKYGVVVMEESTG--KVEKFVEKPKL------------FVGNKINAGI  173 (358)
Q Consensus       114 ~~--~~l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~--~v~~~~ek~~~------------~~~~~~~~Gi  173 (358)
                      ..  -| ..++..|.+++.++++.+   ..+ ...|++.....+|  +|.++.|+|..            ......+++.
T Consensus       260 l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~  338 (486)
T 2yqc_A          260 LVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVN  338 (486)
T ss_dssp             TCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEE
T ss_pred             eeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhcccccccccccccceeEEE
Confidence            44  34 467888888888888776   234 6788887542115  47788887741            1235789999


Q ss_pred             EEEChhhhhh
Q 018327          174 YLLNPAVLDR  183 (358)
Q Consensus       174 y~~~~~~l~~  183 (358)
                      |+|+.++++.
T Consensus       339 ~~~~l~~L~~  348 (486)
T 2yqc_A          339 HYYSVEFLNK  348 (486)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEeHHHHHH
Confidence            9999998876

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.32  E-value=8.7e-12  Score=107.72  Aligned_cols=83  Identities=19%  Similarity=0.299  Sum_probs=49.4

Q ss_pred             ceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCccEEC
Q 018327          251 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILG  325 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i~  325 (358)
                      ++.|+|++.||++++|.  .+++||++|+||++|.|     +++|+|+....   ..+++||++|+||.+++|.++++||
T Consensus       137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I-----~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG  211 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVG  211 (267)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEEC
T ss_pred             ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEE-----cCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEEC
Confidence            44555555555555554  23444444444444444     33333322211   1236888888888888888888888


Q ss_pred             CCcEECCceEEcC
Q 018327          326 EDVHVCDEIYSNG  338 (358)
Q Consensus       326 ~~~~i~~~~~i~~  338 (358)
                      ++++||+++++..
T Consensus       212 ~~a~IGagsvV~~  224 (267)
T 1ssq_A          212 KYAKIGANSVVLN  224 (267)
T ss_dssp             TTCEECTTCEECS
T ss_pred             CCCEECCCCEEcc
Confidence            8888888888764

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.32  E-value=2.7e-11  Score=108.01  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=10.0

Q ss_pred             EEccCCEECCccEEcCccEECCC
Q 018327          305 IIGWHSTVGQWARVENMTILGED  327 (358)
Q Consensus       305 ~i~~~~~ig~~~~i~~~~~i~~~  327 (358)
                      .||+++.|+.++.|..++.||++
T Consensus       134 ~IG~~~~I~~~~~I~~~~~IG~~  156 (305)
T 3t57_A          134 VIGDNNLIMGSCHIAHDCKIGDR  156 (305)
T ss_dssp             EECSSCEECTTCEECTTCEECSS
T ss_pred             EEccCccccceEEEeCceEeCCc
Confidence            44444444444444443444333

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.29  E-value=3.1e-11  Score=100.52  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             cceEECCCCEECCCcEECC--CcEECCCCEECCCcEEeee-------------EECCCcEECCCcEEec-cEEccCCEEC
Q 018327          250 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC-------------TVMRGVRIKKHACISS-SIIGWHSTVG  313 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~-------------~i~~~~~i~~~~~i~~-~~i~~~~~ig  313 (358)
                      .++.||+++.|+.+++|..  ++.||++|.||++|.|..+             .++.+++||++|.|.. ++|.++++||
T Consensus        74 ~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG  153 (203)
T 1krr_A           74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG  153 (203)
T ss_dssp             TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEEC
Confidence            3445555555555554432  3678888888888887521             1344455555555554 4555566666


Q ss_pred             CccEEcCccEECCCcEECCceEEcC
Q 018327          314 QWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +++.|+.+++|.++  |.+++.+.|
T Consensus       154 ~~~vIgagsvV~~d--vp~~~vv~G  176 (203)
T 1krr_A          154 DNSVIGAGSIVTKD--IPPNVVAAG  176 (203)
T ss_dssp             TTCEECTTCEECSC--BCTTEEEET
T ss_pred             CCCEECCCCEECCC--cCCCcEEEc
Confidence            66666665666554  466666554

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.29  E-value=7.5e-12  Score=110.55  Aligned_cols=90  Identities=21%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             CCcEEecceEECCCCEE--CCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCc----EEec-cEEccCCEECCc
Q 018327          244 TGANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHA----CISS-SIIGWHSTVGQW  315 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~----~i~~-~~i~~~~~ig~~  315 (358)
                      .+..|++++.||+++.|  +.+++|++++.||++|.|+.++.|+ ++.+++++.++.++    +|++ +.||.+|.|..+
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilgg  241 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGN  241 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESS
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCC
Confidence            45556666666666666  4456666666666666666666665 44444444443332    4443 344444444444


Q ss_pred             cEEcCccEECCCcEECCc
Q 018327          316 ARVENMTILGEDVHVCDE  333 (358)
Q Consensus       316 ~~i~~~~~i~~~~~i~~~  333 (358)
                      ++|+.+|+||.+++|..+
T Consensus       242 v~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          242 IIVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             CEECSSEEECTTCEECSC
T ss_pred             cEECCCCEECCCCEECCC
Confidence            444444444444444443

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.27  E-value=1.3e-11  Score=116.41  Aligned_cols=91  Identities=14%  Similarity=0.214  Sum_probs=75.6

Q ss_pred             cEEecceEECCCCEECCCcEEC----CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccC------------
Q 018327          246 ANIVGNVLVHESAQIGEGCLIG----PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH------------  309 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~~~~i~----~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~------------  309 (358)
                      ..+.+...|++++.|+++++|.    .+++||++|.|+. +.|.+++||++|.||++|.|.++++..+            
T Consensus       303 ~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~  381 (451)
T 1yp2_A          303 SFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLL  381 (451)
T ss_dssp             CSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHH
T ss_pred             hccCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccc
Confidence            3556778888888888886662    2567777777775 7777899999999999999999877666            


Q ss_pred             -------CEECCccEEcCccEECCCcEECCceEEcC
Q 018327          310 -------STVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       310 -------~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                             +.||+++.|.+ ++||++|.||+++.+.+
T Consensus       382 ~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~  416 (451)
T 1yp2_A          382 AAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIIN  416 (451)
T ss_dssp             HTTTCCCSEECTTCEEES-EEECTTCEECTTCEECC
T ss_pred             cccCceeEEECCCCEEec-cEeCCCcEECCCCEEeC
Confidence                   99999999987 99999999999999864

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.27  E-value=6.3e-12  Score=109.87  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=14.3

Q ss_pred             ecceEECCCCEECCCcEECCCcEECCCCEECCCcEE
Q 018327          249 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  284 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i  284 (358)
                      ..++.|+|.+.|.+++.|++++.|++++.|+.++.|
T Consensus       182 ~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~I  217 (347)
T 3r5d_A          182 PAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGT  217 (347)
T ss_dssp             CTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEE
T ss_pred             cCCcEECCcCEECCCCEECCCCEECCCCEECCCCEE
Confidence            334444444444444443333333333333333333

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.25  E-value=8.5e-12  Score=105.91  Aligned_cols=17  Identities=0%  Similarity=0.129  Sum_probs=7.0

Q ss_pred             cEEccCceeccCCCCCc
Q 018327          339 GVVLPHKEIKSSILKPE  355 (358)
Q Consensus       339 ~~v~~~~~i~~~~~~~~  355 (358)
                      +.+++++.|.+++|+++
T Consensus       144 avIgagsvV~~dVp~~~  160 (220)
T 4hur_A          144 AIIAAEAVVTKNVAPYS  160 (220)
T ss_dssp             CEECTTCEECSCBCTTE
T ss_pred             CEEcCCCEEcccCCCCc
Confidence            33333444444444443

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.22  E-value=9.3e-11  Score=97.14  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=14.4

Q ss_pred             eEECCCCEECCCcEECC--CcEECCCCEECCCcEE
Q 018327          252 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRL  284 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i  284 (358)
                      +.||+++.|+++++|..  ++.||++|.|+++|.|
T Consensus        79 v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I  113 (190)
T 3hjj_A           79 IHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHI  113 (190)
T ss_dssp             EEECTTCEECTTCEEECSSCEEECTTCEECTTCEE
T ss_pred             eEECCceeeCCCeEEEeCCCeEECCceEEcCCcEE
Confidence            33334444444444432  3345555555555555

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.21  E-value=4.9e-11  Score=99.50  Aligned_cols=87  Identities=10%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeee-------------EECCCcEECCCcEEec-cEEccCCEEC
Q 018327          250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRC-------------TVMRGVRIKKHACISS-SIIGWHSTVG  313 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~-------------~i~~~~~i~~~~~i~~-~~i~~~~~ig  313 (358)
                      .++.||+++.|+++++|.  ..+.||++|.||++|.|.++             .+...++||++|.|.. ++|.++++||
T Consensus        73 ~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG  152 (199)
T 3ftt_A           73 WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIG  152 (199)
T ss_dssp             TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEEC
T ss_pred             CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEEC
Confidence            445555555555555553  23566666777777666321             2234444555544433 4455555555


Q ss_pred             CccEEcCccEECCCcEECCceEEcC
Q 018327          314 QWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +++.|+.+++|.++  |.+++.+.|
T Consensus       153 ~~~vIgagsvV~~d--vp~~~v~~G  175 (199)
T 3ftt_A          153 EGSVIGAGSVVTKD--IPPHSLAVG  175 (199)
T ss_dssp             TTCEECTTCEECSC--BCTTEEEET
T ss_pred             CCCEECCCCEECcc--cCCCCEEEE
Confidence            55555555555544  355555544

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.20  E-value=8.5e-11  Score=102.18  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             cCCcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCC
Q 018327          243 ATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHS  310 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~  310 (358)
                      ..+..|++++.||+++.|+  .+++|+++++||++|.|+.++.|+.         ++||++|.||.+|+|.+ +.||++|
T Consensus       162 ~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a  241 (287)
T 3mc4_A          162 IFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCS  241 (287)
T ss_dssp             HTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCC
Confidence            3567788888888888887  7888888899999999999988874         68888888888888875 6777777


Q ss_pred             EECCccEEcC
Q 018327          311 TVGQWARVEN  320 (358)
Q Consensus       311 ~ig~~~~i~~  320 (358)
                      .||++++|.+
T Consensus       242 ~IGagsvV~k  251 (287)
T 3mc4_A          242 KIAAGSVVLK  251 (287)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcc
Confidence            7777777765

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.19  E-value=1e-10  Score=103.04  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=21.0

Q ss_pred             CCcEEecceEECCCCEE--CCCcEECCCcEECCCCEECCCcEEe
Q 018327          244 TGANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLS  285 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~ig~~~~i~  285 (358)
                      .+..|++++.||+++.|  +.+++|+++++||++|.|+.+|.|+
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg  232 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLG  232 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEE
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEEC
Confidence            34444445555555555  4455555555555555555555554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.13  E-value=2.2e-10  Score=94.25  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             ecceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEe-------------------eeEECCCcEECCCcEEeccEEc
Q 018327          249 VGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS-------------------RCTVMRGVRIKKHACISSSIIG  307 (358)
Q Consensus       249 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~i~  307 (358)
                      ..++.||+++.|+.+++|.  .++.||++|.|+.+|.|.                   .++||++|.||.+|.|.     
T Consensus        72 g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~-----  146 (185)
T 2p2o_A           72 GYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVIN-----  146 (185)
T ss_dssp             STTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEEC-----
T ss_pred             cCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEEC-----
Confidence            3566677777777776663  467888888888888884                   34555555555555544     


Q ss_pred             cCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          308 WHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       308 ~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++++||+++.|+.+++|.++  |++++.+.|
T Consensus       147 ~gv~IG~~~vIgagsvV~~~--vp~~~vv~G  175 (185)
T 2p2o_A          147 PGVTIGDNAVIASGAVVTKD--VPANAVVGG  175 (185)
T ss_dssp             TTCEECTTCEECTTCEECSC--BCTTEEEEE
T ss_pred             CCCEECCCCEECCCCEECCC--CCCCcEEEc
Confidence            34444444444444444433  455555543

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.12  E-value=7e-11  Score=99.66  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++|+||.++.|.+++.||++|+||+++.|..
T Consensus       112 v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~  146 (212)
T 3eev_A          112 TIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTK  146 (212)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            68888888888888888888888888888888764

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.12  E-value=5.7e-10  Score=92.14  Aligned_cols=34  Identities=18%  Similarity=0.381  Sum_probs=17.9

Q ss_pred             ceEECCCCEECCCcEECC--CcEECCCCEECCCcEE
Q 018327          251 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRL  284 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i  284 (358)
                      ++.||+++.|+.+++|..  +..||++|.||++|.|
T Consensus        76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I  111 (188)
T 3srt_A           76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQI  111 (188)
T ss_dssp             TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEE
T ss_pred             CeEECCcccccCceEEecCCceEECCeeEECCCcEE
Confidence            344444444444444432  2366666677766666

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.11  E-value=3.6e-10  Score=92.67  Aligned_cols=87  Identities=20%  Similarity=0.345  Sum_probs=43.9

Q ss_pred             cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEee-------------eEECCCcEECCCcEEec-cEEccCCEEC
Q 018327          250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTVG  313 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~ig  313 (358)
                      .++.||+++.|+++++|.  .++.||++|.|+++|.|..             ..++.+++||++|.|.. ++|.++++||
T Consensus        71 ~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG  150 (182)
T 1ocx_A           71 YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG  150 (182)
T ss_dssp             TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             CCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEEC
Confidence            445555555555555553  3556777777777777731             11123344444444433 3444444444


Q ss_pred             CccEEcCccEECCCcEECCceEEcC
Q 018327          314 QWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +++.|+.+++|.++  |++++.+.|
T Consensus       151 ~~~vIgagsvV~~d--ip~~~vv~G  173 (182)
T 1ocx_A          151 DNVVVASGAVVTKD--VPDNVVVGG  173 (182)
T ss_dssp             TTCEECTTCEECSC--BCSSEEEET
T ss_pred             CCCEECCCCEECCc--CCCCcEEEc
Confidence            44444444444444  455555544

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.11  E-value=7e-10  Score=95.81  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=60.6

Q ss_pred             cCCcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCC
Q 018327          243 ATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHS  310 (358)
Q Consensus       243 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~  310 (358)
                      ..+..|++++.||+++.|+  .+++|+++++||++|+|+.++.|++         ++||++|.||.++.|.+ +.||++|
T Consensus       135 ~~g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a  214 (267)
T 1ssq_A          135 AFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYA  214 (267)
T ss_dssp             HHSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCC
Confidence            3566777788888888887  4788988999999999999999884         57888888888887765 6677777


Q ss_pred             EECCccEEcC
Q 018327          311 TVGQWARVEN  320 (358)
Q Consensus       311 ~ig~~~~i~~  320 (358)
                      .||+++.+.+
T Consensus       215 ~IGagsvV~~  224 (267)
T 1ssq_A          215 KIGANSVVLN  224 (267)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcc
Confidence            7777666665

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.11  E-value=2e-10  Score=103.47  Aligned_cols=13  Identities=8%  Similarity=0.156  Sum_probs=5.0

Q ss_pred             EECCCcEECCCcE
Q 018327          288 TVMRGVRIKKHAC  300 (358)
Q Consensus       288 ~i~~~~~i~~~~~  300 (358)
                      +||++|.||.+|.
T Consensus       292 vIGdnv~IGagAv  304 (387)
T 2rij_A          292 SVGKACLLGANSV  304 (387)
T ss_dssp             EECTTCEECTTCE
T ss_pred             EEeCCCEECCCCc
Confidence            3333333333333

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.08  E-value=1e-09  Score=95.56  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             CCcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCE
Q 018327          244 TGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHST  311 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~  311 (358)
                      .+..|++++.||+++.|+  .+++|+++++||++|.|+.++.|++         ++||++|.||.++.|.+ +.||++|.
T Consensus       156 ~g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~  235 (289)
T 1t3d_A          156 FQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAK  235 (289)
T ss_dssp             HSCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCE
T ss_pred             cceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCE
Confidence            456777777778888776  4778888888888888888888874         56777777777777664 55666666


Q ss_pred             ECCccEEcC
Q 018327          312 VGQWARVEN  320 (358)
Q Consensus       312 ig~~~~i~~  320 (358)
                      ||.++.+.+
T Consensus       236 IGagsvV~~  244 (289)
T 1t3d_A          236 IGAGSVVLQ  244 (289)
T ss_dssp             ECTTCEECS
T ss_pred             ECCCCEEcc
Confidence            666555554

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.04  E-value=7e-10  Score=103.61  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             ceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      ++.|++++.| +++.|. +++||++|.||.+|.|.+|+|+++|.|+++|+|.+++||++|.||++++|..
T Consensus       324 ~~~ig~~~~I-~~~~i~-~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~  391 (420)
T 3brk_X          324 SSVVSGDCII-SGAALN-RSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGE  391 (420)
T ss_dssp             SCEECSSCEE-ESCEEE-SCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESS
T ss_pred             CCEECCCCEE-cCCEEe-CcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeC
Confidence            7777777777 677774 7889999999999999889999999999999988888888888888887775

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.02  E-value=4.3e-10  Score=94.76  Aligned_cols=35  Identities=14%  Similarity=0.120  Sum_probs=26.8

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++|+||.++.|.+++.||++++|++++.+..
T Consensus       119 v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  153 (219)
T 4e8l_A          119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  153 (219)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            67777888888887777777777777777777754

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.99  E-value=3.7e-10  Score=94.63  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=26.7

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      ++||++|+||.++.|.+++.||++++|++++.+..
T Consensus       114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~  148 (209)
T 1mr7_A          114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (209)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcC
Confidence            67777888888888877777777777777777654

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.95  E-value=1.5e-09  Score=91.46  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             ECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +..+++|++++.||.++.|..++.|+ ++++++++.|.+++|+++++
T Consensus       115 ~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~  161 (219)
T 4e8l_A          115 LKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIV  161 (219)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             ccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEE
Confidence            33446666666666666666666664 67777788888999988765

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.94  E-value=1.4e-09  Score=91.64  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=30.4

Q ss_pred             cCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          308 WHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       308 ~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      .++.++..++|+++|+||.++.|..++.|+ ++++++++.|.+++|+++++
T Consensus       104 ~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv  154 (212)
T 3eev_A          104 DGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVV  154 (212)
T ss_dssp             CCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             CCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE
Confidence            333444455555555555555555555554 55666677777888887765

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.92  E-value=1.3e-09  Score=91.20  Aligned_cols=47  Identities=15%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             EECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      .+..+++|++++.||.++.|..++.|+ ++++++++.|.+++|+++++
T Consensus       109 ~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~  156 (209)
T 1mr7_A          109 PIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA  156 (209)
T ss_dssp             CCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             cccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEE
Confidence            344445555556666666666666664 66667788888899988765

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.87  E-value=7.4e-09  Score=86.70  Aligned_cols=90  Identities=14%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             ecceEECCCCEECC--------CcEE--------CCCcEECCCCEECCCcEEe--ee--EECC---------------Cc
Q 018327          249 VGNVLVHESAQIGE--------GCLI--------GPDVAVGPGCVVESGVRLS--RC--TVMR---------------GV  293 (358)
Q Consensus       249 ~~~~~i~~~~~i~~--------~~~i--------~~~~~ig~~~~ig~~~~i~--~~--~i~~---------------~~  293 (358)
                      .++..||+++.|.+        ++++        .+.+.||++|.|+++|.|.  ..  ...+               .+
T Consensus        20 ~~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~   99 (212)
T 1xat_A           20 NPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFA   99 (212)
T ss_dssp             CTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGG
T ss_pred             cCCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeeccccccc
Confidence            45666666666654        2333        2467788888888888762  11  2211               13


Q ss_pred             EECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          294 RIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       294 ~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      .+++++.+.+ ++||++|+||.++.|.+++.||++++||+++.+..
T Consensus       100 ~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          100 GAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             GCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            3445565654 78899999999999998899999999888888865

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.79  E-value=2.9e-08  Score=83.13  Aligned_cols=72  Identities=8%  Similarity=0.010  Sum_probs=49.8

Q ss_pred             eeEECCCcEECCCcEEe--cc--E---------------------EccCCEECCccEEcCccEECCCcEECCceEEc-Cc
Q 018327          286 RCTVMRGVRIKKHACIS--SS--I---------------------IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GG  339 (358)
Q Consensus       286 ~~~i~~~~~i~~~~~i~--~~--~---------------------i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~  339 (358)
                      ...||++|.|+++++|.  +.  .                     +++++.+...++|+++|+||.+++|..++.|+ ++
T Consensus        56 ~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~  135 (212)
T 1xat_A           56 KLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGA  135 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTC
T ss_pred             CEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCCC
Confidence            45667777777777662  11  1                     22334455567777777777777777777775 78


Q ss_pred             EEccCceeccCCCCCccc
Q 018327          340 VVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       340 ~v~~~~~i~~~~~~~~~~  357 (358)
                      ++++++.|.+++|+++++
T Consensus       136 ~IgagsvV~~~vp~~~~~  153 (212)
T 1xat_A          136 IIGSRALVTGDVEPYAIV  153 (212)
T ss_dssp             EECTTCEECSCBCTTEEE
T ss_pred             EECCCCEEcccCCCCcEE
Confidence            888899999999998765

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=98.37  E-value=1.2e-05  Score=75.17  Aligned_cols=176  Identities=19%  Similarity=0.248  Sum_probs=106.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHHC----C-CCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i   75 (358)
                      +|+||||.|+||+-   ..||.++|+. |+++++..++.+.+.    | .-..+|.++. ..+.+++++++. +.++..+
T Consensus       130 vvlLaGGlGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~-~~fg~~V  205 (528)
T 3r3i_A          130 VVKLNGGLGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKY-NHCRVKI  205 (528)
T ss_dssp             EEEECCCBCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGG-TTSSCCE
T ss_pred             EEEeCCCCccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhc-CccCCCe
Confidence            67799999999976   7899999996 999999999888775    4 2244555555 578888888874 2334433


Q ss_pred             EEecc---------------------------CCcCCCchHHHHH------HhhccCCCCCcEEEEeCCeeeccCHHHHH
Q 018327           76 ICSQE---------------------------TEPLGTAGPLALA------RDKLIDDTGEPFFVLNSDVISEYPFAEMI  122 (358)
Q Consensus        76 ~~~~~---------------------------~~~~g~~~sl~~~------~~~i~~~~~~~~lv~~gD~i~~~~l~~~~  122 (358)
                      .+..|                           ..|.|.++ ++.+      ++.+....-+.+.+...|.+...--..++
T Consensus       206 ~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGd-iy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~L  284 (528)
T 3r3i_A          206 YTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGD-IYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYIL  284 (528)
T ss_dssp             EEEECCCBCCEETTTCCCC-------------CBCCBTTT-HHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHH
T ss_pred             EEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChH-HHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHH
Confidence            33221                           12344443 2222      23332233348999999995433224466


Q ss_pred             HHHHhc----CCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCCC--------CCCCeEEEEEEEEChhhhhhc
Q 018327          123 EFHKAH----GGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI  184 (358)
Q Consensus       123 ~~~~~~----~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l  184 (358)
                      ..+..+    +.+..+-+   ..+ ..-|.+... + |+  +.++.+-|..        ..-.+.++...+|+-+.++.+
T Consensus       285 g~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~-d-Gk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v  362 (528)
T 3r3i_A          285 NHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY-E-GKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRL  362 (528)
T ss_dssp             HHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS-S-SSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHH
T ss_pred             HHHHhcccccCCcEEEEEeEccccCCcccEEEEE-C-CeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHH
Confidence            666655    56665544   222 344555543 2 43  5555554431        122347888899998887755


Q ss_pred             c
Q 018327          185 E  185 (358)
Q Consensus       185 ~  185 (358)
                      .
T Consensus       363 ~  363 (528)
T 3r3i_A          363 Q  363 (528)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=97.91  E-value=0.0012  Score=61.16  Aligned_cols=175  Identities=19%  Similarity=0.204  Sum_probs=106.4

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHHC----C-CCEEEEEecc-ChHHHHHHHHhhhhccCc--
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGI--   73 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~--   73 (358)
                      +|+||+|.|+||+-   ..||.++|+ .|+++++..++.+.+.    + .=..+|.++. .++++++++++.. .+++  
T Consensus        79 vvlLaGGlGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~-~Fgl~~  154 (484)
T 3gue_A           79 VLKLNGGLGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYP-TLYEVF  154 (484)
T ss_dssp             EEEEECCCCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCH-HHHTTC
T ss_pred             EEEEcCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCc-ccCCCc
Confidence            57799999999976   689999999 7999999998877653    2 2345666666 5788999998732 1111  


Q ss_pred             -EEEEec-----------------------cCCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018327           74 -KIICSQ-----------------------ETEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEF  124 (358)
Q Consensus        74 -~i~~~~-----------------------~~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~  124 (358)
                       .+.+..                       ...|.|.++-....     ++.+....-+++.+...|.+...-=..++..
T Consensus       155 ~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~  234 (484)
T 3gue_A          155 DSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDY  234 (484)
T ss_dssp             CCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHH
T ss_pred             cceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHH
Confidence             111110                       11234555422221     2333223334899999999543222567788


Q ss_pred             HHhcCCeeEEEe---cCC-CCeeeEEEc---------CCCCc--EEEEeecCCC--------CCCCeEEEEEEEEChhhh
Q 018327          125 HKAHGGEASIMV---DEP-SKYGVVVME---------ESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVL  181 (358)
Q Consensus       125 ~~~~~~~~~~~~---~~~-~~~~~~~~d---------~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l  181 (358)
                      +.+++.++.+-+   ..+ ..-|.+...         .+ |+  +.++.+-|.+        ....+.+++-.+++-..+
T Consensus       235 ~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~d-G~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~l  313 (484)
T 3gue_A          235 MHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTR-RRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLMEL  313 (484)
T ss_dssp             HHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CC-CEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHHH
T ss_pred             HHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCC-CCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHHH
Confidence            888888877766   222 345655543         12 54  4555554431        122356888888887766


Q ss_pred             h
Q 018327          182 D  182 (358)
Q Consensus       182 ~  182 (358)
                      +
T Consensus       314 ~  314 (484)
T 3gue_A          314 K  314 (484)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=97.57  E-value=0.00012  Score=61.26  Aligned_cols=103  Identities=21%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             CeEEEEe--cCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEE-EEEeccChHHHHHHHHhhhhccCcEEEE
Q 018327            1 MKALILV--GGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEV-VLAINYQPEVMLNFLKEFEAKLGIKIIC   77 (358)
Q Consensus         1 m~avIla--~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i-~vv~~~~~~~i~~~l~~~~~~~~~~i~~   77 (358)
                      |.+||++  +..-+||.+   .+.+......++||++|+++.+..++++.+ ++++++..  ..    .+   +++.+..
T Consensus         4 ~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~----~~---~~~~~v~   71 (211)
T 2i5e_A            4 MRAVIPYKKAGAKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--LE----EM---TEARVLL   71 (211)
T ss_dssp             CEEEEECCCTTTTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--CS----SC---CSSEEEE
T ss_pred             eEEEEEeCCCCCccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--HH----hh---cCCEEEE
Confidence            6789999  556667654   222222336689999999999999999999 88887632  11    11   3555532


Q ss_pred             eccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHH
Q 018327           78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIE  123 (358)
Q Consensus        78 ~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~  123 (358)
                        +.  .|..+++.++.+.+  .  +.++++.||+.  ....++.+++
T Consensus        72 --~~--~gl~~sl~~a~~~~--~--~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           72 --DE--KDLNEALNRYLKEA--E--EPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             --CC--SCHHHHHHHHHHHC--C--SCEEEECSCCTTCCHHHHHHHTT
T ss_pred             --CC--CCHHHHHHHHHHhc--C--CCEEEEcCCcCCCCHHHHHHHHc
Confidence              33  68888999888776  2  38999999993  3333555554

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=96.86  E-value=0.0093  Score=50.64  Aligned_cols=92  Identities=10%  Similarity=0.109  Sum_probs=58.7

Q ss_pred             CcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe
Q 018327           30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN  109 (358)
Q Consensus        30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~  109 (358)
                      -++|+.++++.+...+.+.++++.+.......+ ...|.. .++  .+..| ...|.+.++..+...+.....+.++++.
T Consensus        36 ~~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~-~~~~~~-~~~--~~~~q-~~~gLg~rl~~a~~~~~~~~~~~vliig  110 (242)
T 3cgx_A           36 YRHFVQDMLQGLARLHADLHICYVPGDADLPEK-FKAWLG-PQH--MFAAQ-QGLDLGERMKHAMQKAFDDGYDRVVLMG  110 (242)
T ss_dssp             HHHHHHHHHHHHTTSSSEEEEEECCCCTTHHHH-HHHHHC-TTS--EEEEC-CSSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCchhhhhh-hhhhcc-CCc--EEecC-CCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            368999999999999887777776654443310 011111 122  33444 3458889999988765222234899999


Q ss_pred             CCe--eeccCHHHHHHHHH
Q 018327          110 SDV--ISEYPFAEMIEFHK  126 (358)
Q Consensus       110 gD~--i~~~~l~~~~~~~~  126 (358)
                      +|+  +...++.++++.+.
T Consensus       111 aD~P~L~~~~l~~a~~~l~  129 (242)
T 3cgx_A          111 SDIPDYPCELVQKALNDLQ  129 (242)
T ss_dssp             SSCTTCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHhc
Confidence            999  55556777776543

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=96.84  E-value=0.01  Score=56.55  Aligned_cols=141  Identities=14%  Similarity=0.193  Sum_probs=86.5

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC-C-CCEEEEEecc-ChHHHHHHHHhhhhccCcEEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV-G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKII   76 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~-g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~   76 (358)
                      +|+||+|.|+||+-   ..||.++|+.   |++++++.++++.+. | .-..+|.++. .++.+.++++++.-. ...+.
T Consensus       117 vvllaGGlGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~-~~~V~  192 (630)
T 3ogz_A          117 FVLVAGGLGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLE-VPNLH  192 (630)
T ss_dssp             EEEECCCEEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTCC-CTTEE
T ss_pred             EEEecCCcccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCCC-cccEE
Confidence            57799999999987   7899999997   999999999988754 3 2344566665 578899999984311 01111


Q ss_pred             Eecc----------------------CCcCCCchHHHH-----------------------HHhhccCCCCCcEEEEeCC
Q 018327           77 CSQE----------------------TEPLGTAGPLAL-----------------------ARDKLIDDTGEPFFVLNSD  111 (358)
Q Consensus        77 ~~~~----------------------~~~~g~~~sl~~-----------------------~~~~i~~~~~~~~lv~~gD  111 (358)
                      +..|                      ..|.|.++-...                       .++.+....-+.+.+...|
T Consensus       193 ~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vD  272 (630)
T 3ogz_A          193 VLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDT  272 (630)
T ss_dssp             EEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTT
T ss_pred             EEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccC
Confidence            1111                      113355442221                       1233222233488899999


Q ss_pred             eeeccC-HHHHHHHHHhcCCeeEEEe---cCCCCeeeEEE
Q 018327          112 VISEYP-FAEMIEFHKAHGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus       112 ~i~~~~-l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  147 (358)
                      .+.... -..++..+.+++.++.+-+   .....-|.+..
T Consensus       273 N~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~l~~  312 (630)
T 3ogz_A          273 NAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCR  312 (630)
T ss_dssp             BTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCEEEE
T ss_pred             CccccccCHHHhHHHHhcCCCEEEEEEECCCCcceeeEEE
Confidence            944222 3456777777878776666   22234455544

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=94.45  E-value=0.47  Score=39.82  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=66.6

Q ss_pred             cccCCc-chHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccC--------CcCCCchHHHHHH
Q 018327           26 VEFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET--------EPLGTAGPLALAR   94 (358)
Q Consensus        26 lpi~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~--------~~~g~~~sl~~~~   94 (358)
                      +|.-|. ..|..+|+++.+....  +++||-+...+...+.++++.+..++.+  +...        ...|.+.+.-.+.
T Consensus         7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~--i~~~~~~~~~~~~n~G~~~a~N~gi   84 (255)
T 1qg8_A            7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRF--YQSDISGVKERTEKTRYAALINQAI   84 (255)
T ss_dssp             EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE--EECCCCSHHHHHSSCHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEE--EecccccccccccccCHHHHHHHHH
Confidence            445444 4899999999887643  4555555456777778887644334443  4443        3456677777777


Q ss_pred             hhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327           95 DKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH  128 (358)
Q Consensus        95 ~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~  128 (358)
                      +..  ..+ .++++..|.+...+ +..+++.+.+.
T Consensus        85 ~~a--~g~-~i~~lD~Dd~~~~~~l~~~~~~~~~~  116 (255)
T 1qg8_A           85 EMA--EGE-YITYATDDNIYMPDRLLKMVRELDTH  116 (255)
T ss_dssp             HHC--CCS-EEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred             HHc--CCC-EEEEeCCCCccChHHHHHHHHHHHhC
Confidence            776  443 88999999988766 88888887765

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=93.16  E-value=0.49  Score=39.25  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=66.2

Q ss_pred             ccccCCc-chHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327           25 LVEFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLIDD  100 (358)
Q Consensus        25 llpi~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~~~  100 (358)
                      .+|.-|. ..|..+|+.+.+....  +++||-+...+...+.++++.+.. .+.+  .. .+..|.+.+.-.+.+..  .
T Consensus        10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~--i~-~~n~G~~~a~N~g~~~a--~   84 (240)
T 3bcv_A           10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV--IH-KKNAGLGMACNSGLDVA--T   84 (240)
T ss_dssp             EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE--EE-CCCCCHHHHHHHHHHHC--C
T ss_pred             EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE--EE-CCCCChHHHHHHHHHHc--C
Confidence            3455454 4999999999887543  455554434455555565554332 3333  33 34567778888888777  4


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeE
Q 018327          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS  133 (358)
Q Consensus       101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~  133 (358)
                      . +.++++..|.+...+ ++.+++.+.+.+.++.
T Consensus        85 g-~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v  117 (240)
T 3bcv_A           85 G-EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAV  117 (240)
T ss_dssp             S-SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEE
T ss_pred             C-CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEE
Confidence            4 388999999987766 8888888776544443

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=92.67  E-value=0.81  Score=42.59  Aligned_cols=104  Identities=12%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             ccccCCc--chHHHHHHHHHHCCCC----EEEEEeccChH-HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhc
Q 018327           25 LVEFANK--PMILHQIEALKAVGVT----EVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL   97 (358)
Q Consensus        25 llpi~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i   97 (358)
                      .+|.-|.  ..|..+|+.+.+....    +|+||-+...+ +..+.++++.+..+..+.++...+..|.+.+...+.+..
T Consensus        34 IIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A  113 (472)
T 1xhb_A           34 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS  113 (472)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC
T ss_pred             EEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhc
Confidence            3455565  4899999999887532    56666554433 366666665444432344555555568888888888776


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCe
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGE  131 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~  131 (358)
                        ..+ .++++..|.....+ |+.+++.+.+....
T Consensus       114 --~gd-~i~flD~D~~~~p~~L~~ll~~~~~~~~~  145 (472)
T 1xhb_A          114 --RGQ-VITFLDAHCECTAGWLEPLLARIKHDRRT  145 (472)
T ss_dssp             --CSS-EEEEEESSEEECTTCHHHHHHHHHHCTTE
T ss_pred             --cCC-eEEEECCCeEeCccHHHHHHHHHHhCCCE
Confidence              443 88999999987766 89999988766543

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=88.20  E-value=1.7  Score=41.55  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             cccCCc--chHHHHHHHHHHCCCC----EEEEEeccChHHH-HHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327           26 VEFANK--PMILHQIEALKAVGVT----EVVLAINYQPEVM-LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI   98 (358)
Q Consensus        26 lpi~g~--pli~~~l~~l~~~gi~----~i~vv~~~~~~~i-~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~   98 (358)
                      +|.-|.  ..|..+|+++.+....    +|+||-+...+.. .+.++++.+... .+.++...+..|.+.+...+.+.. 
T Consensus       118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A-  195 (570)
T 2d7i_A          118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVA-  195 (570)
T ss_dssp             EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHC-
T ss_pred             EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhc-
Confidence            455566  4889999998776532    5666655443333 555555433322 344445555668888888888776 


Q ss_pred             CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327           99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (358)
Q Consensus        99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~  130 (358)
                       .. +.++++..|.....+ |..+++.+.+...
T Consensus       196 -~g-d~i~fLD~D~~~~p~~L~~ll~~l~~~~~  226 (570)
T 2d7i_A          196 -TG-DVITFLDSHCEANVNWLPPLLDRIARNRK  226 (570)
T ss_dssp             -CS-SEEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred             -CC-CEEEEEcCCccccccHHHHHHHHHHhCCC
Confidence             44 388899999977766 8999998876543

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=88.15  E-value=3.6  Score=39.70  Aligned_cols=104  Identities=16%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             ccccCCcc-hHHHHHHHHHHCC---CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327           25 LVEFANKP-MILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD  100 (358)
Q Consensus        25 llpi~g~p-li~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~  100 (358)
                      ++|.-|.+ .|..+|+.+....   .-+++||-+...+...+.++++.+..++.+.... ....|.+.+.-.+.+..  .
T Consensus        98 iIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-~~~~g~~~a~N~g~~~a--~  174 (625)
T 2z86_A           98 VIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQK-DYGYQLCAVRNLGLRAA--K  174 (625)
T ss_dssp             EEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-CCSCCHHHHHHHHHHHC--C
T ss_pred             EEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-CCCcchhHHHHHHHHhC--C
Confidence            45555665 8999999998774   3456666555556677777776544445443322 22234667777777776  4


Q ss_pred             CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCee
Q 018327          101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (358)
Q Consensus       101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~  132 (358)
                      .+ .++++.+|.+...+ +..+++.+.+....+
T Consensus       175 g~-~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~  206 (625)
T 2z86_A          175 YN-YVAILDCDMAPNPLWVQSYMELLAVDDNVA  206 (625)
T ss_dssp             SS-EEEEECTTEEECTTHHHHHHHHHHHCTTEE
T ss_pred             cC-EEEEECCCCCCCHHHHHHHHHHHhcCCceE
Confidence            43 88999999988766 888888877654433

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=82.49  E-value=7.5  Score=38.84  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             ccccCCcc--hHHHHHHHHHHCCCC----EEEEEeccChHHH---------------HHHHHhhhhccCcEEEEeccCCc
Q 018327           25 LVEFANKP--MILHQIEALKAVGVT----EVVLAINYQPEVM---------------LNFLKEFEAKLGIKIICSQETEP   83 (358)
Q Consensus        25 llpi~g~p--li~~~l~~l~~~gi~----~i~vv~~~~~~~i---------------~~~l~~~~~~~~~~i~~~~~~~~   83 (358)
                      ++|.-|.+  ++..+|+++.+....    +|+|+.+...+..               .+.++++.+..++.+..... ..
T Consensus       145 iIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~-~~  223 (802)
T 4hg6_A          145 LVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRER-NE  223 (802)
T ss_dssp             EEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSS-CC
T ss_pred             EEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecC-CC
Confidence            56666665  669999999887532    4666665443332               23344444444555533222 22


Q ss_pred             CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327           84 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (358)
Q Consensus        84 ~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~  130 (358)
                      .|.+.++..+.+..  +.+ .++++.+|.....+ ++.++..+.+...
T Consensus       224 ~GKa~alN~gl~~a--~gd-~Il~lDaD~~~~pd~L~~lv~~~~~dp~  268 (802)
T 4hg6_A          224 HAKAGNMSAALERL--KGE-LVVVFDADHVPSRDFLARTVGYFVEDPD  268 (802)
T ss_dssp             SHHHHHHHHHHHHC--CCS-EEEECCTTEEECTTHHHHHHHHHHHSSS
T ss_pred             CcchHHHHHHHHhc--CCC-EEEEECCCCCcChHHHHHHHHHHhcCCC
Confidence            46677788888776  443 88899999988777 8899988765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	2e-56
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	2e-55
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	8e-47
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	8e-42
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	5e-37
d1jyka_	229	c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer	9e-23
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	3e-20
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	1e-16
d2cu2a2	268	c.68.1.20 (A:1-268) Putative mannose-1-phosphate g	2e-12
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	1e-10
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-04
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	9e-10
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	1e-09
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-07
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	9e-05
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	1e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	4e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	0.002
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	5e-07
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	7e-07
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	3e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	3e-05
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	1e-04
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	2e-04
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	6e-04
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.001
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.002
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	0.003
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.003
d1h7ea_	245	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	0.004

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (466), Expect = 2e-56
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 14/253 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK +IL GG GTRL P+T  V K L+   +KPMI + +  L   G+ E+++    + +  
Sbjct: 2   MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ GI++  +++  P G A    +    L  +      VL  ++     F+ 
Sbjct: 62  FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSP 119

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
            +    A    A++    V +P ++GVV  ++   +     EKPK    N    G+Y  +
Sbjct: 120 KLRHVAARTEGATVFGYQVMDPERFGVVEFDD-NFRAISLEEKPKQPKSNWAVTGLYFYD 178

Query: 178 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY 230
             V++  +    S   E     +       G L   +L     W+D G     I     +
Sbjct: 179 SKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST-F 237

Query: 231 LDSLRKKSSLKLA 243
           + ++ K+   K+A
Sbjct: 238 VQTVEKRQGFKIA 250

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  181 bits (461), Expect = 2e-55
 Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 13/234 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            K +IL GG GTRL P TL++ K L+   +KPMI + +  L   G+ E+++    Q    
Sbjct: 2   RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    +  G+ +  + +  P G A    +              VL  ++   + F E
Sbjct: 62  FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++         AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  +
Sbjct: 120 LLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYD 178

Query: 178 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYI 224
             V+D       S   E     V       G+L   ++     W+D G     +
Sbjct: 179 QQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  158 bits (402), Expect = 8e-47
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 14/253 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           MK ++L GG GTRL P+T +V K L+   +KPMI + +  L   G+ ++++    +   +
Sbjct: 4   MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
              L    ++ G++     + EP G A    + +D + D   +   VL  +V   + F+E
Sbjct: 64  YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSE 121

Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
           ++    +    A I    V +P  +GVV  +   G+V    EKP     N +  G+Y  +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYFYD 180

Query: 178 PAVLDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY 230
             V++       S   E     V  +    GKL   ++     W+D G     +     +
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS-F 239

Query: 231 LDSLRKKSSLKLA 243
           +++++K+    +A
Sbjct: 240 IETIQKRQGFYIA 252

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score =  144 bits (364), Expect = 8e-42
 Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 31/258 (12%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            KA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+
Sbjct: 3   SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62

Query: 61  LNFLKEF--------------------EAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100
             +   +                    +      +      +   T G L    + + DD
Sbjct: 63  KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122

Query: 101 TGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDE-PSKYGVVVMEESTGKVEKFVE 159
             E F     D +++      I+FHKAHG +A++     P ++G + ++    +  +   
Sbjct: 123 --EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQAGQVRSFQEKP 180

Query: 160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQ 219
           K    +   IN G ++LNP+V+D I+   T+ E+E    +A +G+L A   PGFW  +  
Sbjct: 181 KGDGAM---INGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT 237

Query: 220 PRDYITGLRLYLDSLRKK 237
            RD +     YL+ L +K
Sbjct: 238 LRDKV-----YLEGLWEK 250

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  133 bits (335), Expect = 5e-37
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 46/269 (17%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQPEV 59
           +  +IL GG GTRL PLT    KP V    N  +I   +       ++++ +   +    
Sbjct: 12  VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 71

Query: 60  MLNFLKEFEAKLG-------------IKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106
           +   L    A                 +          GTA  +        + T   + 
Sbjct: 72  LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYL 131

Query: 107 VLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKP 161
           +L  D +    + + I+ H+    + ++          + +G++ ++E  G++ +F EKP
Sbjct: 132 ILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKP 190

Query: 162 KLFVGNK---------------------INAGIYLLNPAVLDRIE----LRPTSIEKEVF 196
           +                            + GIY+++  V+  +             EV 
Sbjct: 191 QGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250

Query: 197 PKIALEG-KLFAMVLPGFWMDIGQPRDYI 224
           P     G ++ A +  G+W DIG    + 
Sbjct: 251 PGATSLGMRVQAYLYDGYWEDIGTIEAFY 279

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 93.2 bits (230), Expect = 9e-23
 Identities = 48/234 (20%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           +KA+IL  G GTRLRPLT + PK LV+   KP+I +QIE LK  G+ ++++ + Y  E  
Sbjct: 4   VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 63

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
               +++  +L      +                   +    E            Y F  
Sbjct: 64  DYLKEKYGVRLVFNDKYAD------------YNNFYSLYLVKEELANSYVIDADNYLFKN 111

Query: 121 MIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 180
           M           S+  ++ +    +V  +   KV+  +   K     +I +G+   +   
Sbjct: 112 MFRNDLTRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVSFWDAPT 167

Query: 181 LDRI--ELRPTSIEKE--------VFPKIALEGKLFAMVLPG-FWMDIGQPRDY 223
            ++I   +    +  E        +      E  ++   L G    +I   +DY
Sbjct: 168 AEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDY 221

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 86.7 bits (213), Expect = 3e-20
 Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 27/252 (10%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           A+IL  G GTR++      PK L + A   M+ H   ++ A+   + V  + ++ E++  
Sbjct: 4   AIILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN-SDVISEYPFAEM 121
            L               ++E LGT   + +    L   +G    +   + +I+      +
Sbjct: 61  VLAGQ-------TEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 113

Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKIN---AGIYL 175
           I+FH  H   A+I+    D P  YG +V  ++   +    +K       +I     G Y+
Sbjct: 114 IDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV 173

Query: 176 LNPAV----LDRIELRP--TSIEKEVFPKIALE--GKLFAMVLPGFWMDIG--QPRDYIT 225
            +       L  I                I  E   K+ A  L  F   +G        T
Sbjct: 174 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALAT 233

Query: 226 GLRLYLDSLRKK 237
              +    +  K
Sbjct: 234 AESVMRRRINHK 245

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 76.7 bits (187), Expect = 1e-16
 Identities = 37/174 (21%), Positives = 57/174 (32%), Gaps = 10/174 (5%)

Query: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
           M  +IL  G GTR+      +PK L   A K M+ H I+A   +G   V L   +  +++
Sbjct: 3   MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59

Query: 61  LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
                         +    + E LGT   +  A     DD        +  +IS      
Sbjct: 60  KQA------LKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQR 113

Query: 121 MIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 174
           + +      G   + V      G   +    GKV   VE        +    I 
Sbjct: 114 LRDAKPQG-GIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEIN 166

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

 Score = 64.3 bits (155), Expect = 2e-12
 Identities = 49/263 (18%), Positives = 80/263 (30%), Gaps = 51/263 (19%)

Query: 1   MK--ALILVGGFGTRLRPL-TLSVPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ 56
           MK  AL++ GG G RL PL     PKP +     K ++   +E L  +   E  L    +
Sbjct: 1   MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60

Query: 57  PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY 116
            +                I    E     TAG + L   + + +  E   VL +D     
Sbjct: 61  DQEA------VARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGD 114

Query: 117 PFAEMIEFHKAHG--------GEASIMVDEPSKYGVVVMEESTG---KVEKFVEKPKLFV 165
             A                            ++YG + +    G   + E FVEKP    
Sbjct: 115 DEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAE 174

Query: 166 GNKINAGIYLLNPAVLDR--------------------IELRPTSIEKEVFPKIA----- 200
             +     Y+ N  V                         L   +  +EV+  +      
Sbjct: 175 ALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISID 234

Query: 201 ---LE--GKLFAMVLPGFWMDIG 218
              +E   ++  ++    W D+G
Sbjct: 235 YGVMEKAERVRVVLGRFPWDDVG 257

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 9/66 (13%), Positives = 24/66 (36%)

Query: 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 307
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 308 WHSTVG 313
              T+G
Sbjct: 71  AACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 266 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG 325
            G DV +    ++E  V     T+   V+I     I +S+IG    +  +  VE+   L 
Sbjct: 17  HGRDVEIDTNVIIEGNV-----TLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-ANLA 70

Query: 326 EDVHV 330
               +
Sbjct: 71  AACTI 75

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 6/162 (3%)

Query: 3   ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
           ALI   G G R        PK  VE  +K ++ H +   +     ++ + +    +   +
Sbjct: 6   ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62

Query: 63  FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMI 122
            ++    ++ +     Q        G   L    L  +      +L  D       +E +
Sbjct: 63  KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAE---TDNILVHDAARCCLPSEAL 119

Query: 123 EFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLF 164
                  G A+            +    +G++   V++  L+
Sbjct: 120 ARLIEQAGNAAEGGILAVPVADTLKRAESGQISATVDRSGLW 161

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score = 56.0 bits (134), Expect = 1e-09
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 1  MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
            A++L GG         +   K LV +  +PM+   +EAL A G++ V +  N      
Sbjct: 3  PSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPA 61

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSII 306
           I  +  VH +A + EG  IG +  +GP C+V   V +     +   V +  H  I     
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 307 GWHSTV-------GQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 348
            +            ++A       +G+   + + +  + G V      K
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTK 110

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-SSSIIGWHST 311
           ++ +SA +    ++    ++G    +        C V   V I +   + S  ++  H+ 
Sbjct: 1   MIDKSAFVHPTAIVEEGASIGANAHIGPF-----CIVGPHVEIGEGTVLKSHVVVNGHTK 55

Query: 312 VGQWARVENMTILGEDVHVCDEIYSNGGV 340
           +G+   +     +GE             V
Sbjct: 56  IGRDNEIYQFASIGEVNQDLKYAGEPTRV 84

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK-KHACISS 303
           + I    ++   A+I +G  IG    +G G  ++ GV+L +  T+     +         
Sbjct: 1   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 60

Query: 304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 339
           +++G      ++    +  I+GED  + +    N G
Sbjct: 61  AVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPG 96

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 310
           N +     +I     I     +     +   V + R  +  G RI  +  I SS +    
Sbjct: 63  NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122

Query: 311 TVGQWARVE-NMTILGEDV 328
            +   ARV     IL    
Sbjct: 123 AIYGDARVLNQSEILAIQG 141

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 250 GNVLV-HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW 308
           G+  +  E+A    G  I  +  +   C + + VR+     +    I   A IS ++   
Sbjct: 55  GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114

Query: 309 HSTVGQWARVENMTILGEDVHV 330
            S+V +   +     +     +
Sbjct: 115 SSSVREECAIYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 10/73 (13%), Positives = 25/73 (34%)

Query: 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 305
           A       +  +A+I + C +  +V +G    ++         +   V I+  +      
Sbjct: 64  AMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA 123

Query: 306 IGWHSTVGQWARV 318
           I   + V   + +
Sbjct: 124 IYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 245 GANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHA 299
           G  I GN  + +   +     IG         +  G  +   V +   +V     I   A
Sbjct: 69  GTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDA 128

Query: 300 CI--SSSIIG--------------WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 341
            +   S I+               +       +R+ +   L  +  +      +   V
Sbjct: 129 RVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEV 186

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 1  MK--ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
          +   A++   GFG R++      PK  +   N+ ++ H + AL A
Sbjct: 2  LDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLA 43

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.3 bits (111), Expect = 7e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 1  MK-ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
          M  A++L  G G R+     +VPK  +E   + +  + +     
Sbjct: 3  MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLK 43

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA 43
           ++L GG G R++    S+PK  +    +P+ L+       
Sbjct: 7  VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSR 44

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALK 42
           ++L  G  TR       V K  +   N P+ L+  + L 
Sbjct: 4  LIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLS 40

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          KPLV+   KPMI+H +E  +  G   +++A +++    
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVAR 55

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
          KPL +   KPMI H  E     G + V++A + +    
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 3  ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIE 39
           ++L GG   R+      V K L+E   KP+  H  +
Sbjct: 6  GVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 307
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 308 WHSTVGQWARVENMTILGEDVHVCDEIY 335
              T+G +AR+     L E  HV + + 
Sbjct: 71  AACTIGPFARLRPGAELLEGAHVGNFVE 98

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWH 309
              +  +   G    I  +V +     +   V++ + C +   V          +++   
Sbjct: 8   RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67

Query: 310 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 351
           +            +      +      N   +   +  K S 
Sbjct: 68  NLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK 109

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG--------------VRIK 296
           +  V E+A +    ++    +V P  V+   +                          I 
Sbjct: 16  SAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIG 75

Query: 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKS 349
           ++  I  + +   + VG +  +   +++ +   + D +    G VV P+KEI  
Sbjct: 76  EYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPD 129

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 309
              +    +I     I  +V +     + +   L+  T +    I   A I++S+I   
Sbjct: 8   ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEES 66

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL 71
          KPL++   KPMI H  E AL+  GV EV +A +             +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIM 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	100.0
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	100.0
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	100.0
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	100.0
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	100.0
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.96
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.96
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.94
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.92
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.69
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.67
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.67
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.66
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.65
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.64
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.63
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.61
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.61
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.59
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.59
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.59
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.56
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.56
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.54
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.52
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.5
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.49
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.47
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.46
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.46
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.44
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.44
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.42
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.42
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.41
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.41
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.36
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.34
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.34
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.3
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.3
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.29
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.26
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.23
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.22
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.17
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.12
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.09
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.05
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.0
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.82
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.76
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.65
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.65
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.56
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	97.75
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	96.31
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	94.31
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	93.23
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	91.96

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.6e-40  Score=291.15  Aligned_cols=227  Identities=23%  Similarity=0.368  Sum_probs=199.2

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+.|..+|+++|++++++ ..+.+++++.+ .+.+++++.+..
T Consensus         2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~-~~~~g~~I~y~~   80 (292)
T d1fxoa_           2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-GSNWGLDLQYAV   80 (292)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhcc-ccccCeEEEEcc
Confidence            6899999999999999999999999999999999999999999999999988875 56677777775 467789999999


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      |..+.|+++++..+.+++  ..++.|+++.+|.+++.++..+++.|.++.+.+++++   ++|++||++..|++ +++..
T Consensus        81 q~~~~Gta~ai~~a~~~i--~~~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~-~ki~~  157 (292)
T d1fxoa_          81 QPSPDGLAQAFLIGESFI--GNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAIS  157 (292)
T ss_dssp             CSSCCCGGGHHHHTHHHH--TTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEEE
T ss_pred             CCCCCcHHHHHHhhhhhc--CCCceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCC-CCEeE
Confidence            999999999999999999  4443667778888999999999999999988888877   78999999999987 99999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~~  229 (358)
                      +.|||.++.|+++.+|+|+|++++++.+..-     ......|+++.+++++++..+.+.  .+|.|++|+++|++|+..
T Consensus       158 ~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~  237 (292)
T d1fxoa_         158 LEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQF  237 (292)
T ss_dssp             EEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHH
T ss_pred             EEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHH
Confidence            9999999999999999999999998876422     233446889999999988777664  369999999999999976


Q ss_pred             HH
Q 018327          230 YL  231 (358)
Q Consensus       230 ~l  231 (358)
                      +.
T Consensus       238 v~  239 (292)
T d1fxoa_         238 IA  239 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-40  Score=289.08  Aligned_cols=226  Identities=23%  Similarity=0.380  Sum_probs=194.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHH-HHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEV-MLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~-i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+.|..+|+++|++++++.... +++++.+ .+++++++.|..
T Consensus         2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y~~   80 (291)
T d1mc3a_           2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE   80 (291)
T ss_dssp             CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred             ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999986554 4555554 567799999999


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      |.++.|+++|+..+.+++  +.++.+|++.+|.++..++..+++.|.++...+++++   ++|++||+++.|++ ++|..
T Consensus        81 Q~~plGta~Ai~~a~~fi--~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~-g~i~~  157 (291)
T d1mc3a_          81 QPSPDGLAQAFIIGETFL--NGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAIS  157 (291)
T ss_dssp             CSSCCCSTHHHHHTHHHH--TTSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEEE
T ss_pred             CCCCCchHHHHHHHHHHh--CCCCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccC-cceeE
Confidence            999999999999999999  4442455556666888899999999998888888877   89999999999987 99999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~~  229 (358)
                      +.|||..+.++++.+|+|+|++++++.+....     ..-..|+++.+++++.+..+.+.  .+|.|++|+++|++|+..
T Consensus       158 i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~  237 (291)
T d1mc3a_         158 LEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTF  237 (291)
T ss_dssp             CCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHH
T ss_pred             EEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHH
Confidence            99999999999999999999999999875421     22235788888988887666553  369999999999999975


Q ss_pred             H
Q 018327          230 Y  230 (358)
Q Consensus       230 ~  230 (358)
                      .
T Consensus       238 v  238 (291)
T d1mc3a_         238 V  238 (291)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=3.3e-35  Score=260.48  Aligned_cols=227  Identities=24%  Similarity=0.388  Sum_probs=192.0

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ   79 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~   79 (358)
                      |+|||||||.|+||+|+|...||||+|++|+|||+|+++.|..+|+++++|++++.. +.+++++.+ .+.+++.+.++.
T Consensus         4 MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~-~~~~~~~i~~v~   82 (295)
T d1lvwa_           4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-GSQFGVRFSYRV   82 (295)
T ss_dssp             CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTSEEEEEE
T ss_pred             cEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc-chhcCCEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999865 455556554 356688898899


Q ss_pred             cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      +..+.||++|++.+.+.+  +.++.++++++|.++..++..++..+......+++.+   ++|..||++..+.+ ++|..
T Consensus        83 e~~~~gta~Al~~a~~~l--~~~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~-~~v~~  159 (295)
T d1lvwa_          83 QEEPRGIADAFIVGKDFI--GDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVIS  159 (295)
T ss_dssp             CSSCCCGGGHHHHTHHHH--TTSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEEE
T ss_pred             CCCCCCHHHHHHHHHHHc--CCCCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCC-CcEEE
Confidence            999999999999999999  4443677788888888899999999999888888877   77889999999886 89999


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCce--EEEeecCeEEecCCHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKL--FAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v--~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      |.|||..+.+.++++|+|++++++|..+...     ......++++.++..+..  +.+..+.+|.|++++++|.+++..
T Consensus       160 ~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~  239 (295)
T d1lvwa_         160 IEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSF  239 (295)
T ss_dssp             EEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHH
T ss_pred             EeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHH
Confidence            9999998889999999999999998766422     222335677777777664  445566799999999999999876


Q ss_pred             HH
Q 018327          230 YL  231 (358)
Q Consensus       230 ~l  231 (358)
                      +.
T Consensus       240 i~  241 (295)
T d1lvwa_         240 IE  241 (295)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=4.7e-35  Score=261.69  Aligned_cols=233  Identities=20%  Similarity=0.332  Sum_probs=186.4

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh-------hccC
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-------AKLG   72 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-------~~~~   72 (358)
                      +.|||||||.|+||+|+|..+||+|||++|+ |||+|+|++|.++|+++|+|++++..+.+.+|+.+-.       +..+
T Consensus        12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~   91 (307)
T d1yp2a2          12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG   91 (307)
T ss_dssp             EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred             eEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccccc
Confidence            3699999999999999999999999999875 9999999999999999999999999999999987521       1223


Q ss_pred             cEEEEeccCC------cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCC
Q 018327           73 IKIICSQETE------PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSK  141 (358)
Q Consensus        73 ~~i~~~~~~~------~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~  141 (358)
                      ....+..+..      ..|+++++..++..+.+...++|++++||.+++.++..+++.|..++..+++..     +....
T Consensus        92 ~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (307)
T d1yp2a2          92 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA  171 (307)
T ss_dssp             EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred             cceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccc
Confidence            3333333322      358899999999988665556899999999999999999999999988887776     45578


Q ss_pred             eeeEEEcCCCCcEEEEeecCCCC---------------------CCCeEEEEEEEEChhhhhhccC----CCCCcccchH
Q 018327          142 YGVVVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRIEL----RPTSIEKEVF  196 (358)
Q Consensus       142 ~~~~~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~d~l  196 (358)
                      ||++.+|++ ++|..|.|||...                     ...+.++|+|+|+++.|..+..    ...++..|++
T Consensus       172 ~gvv~~d~~-~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i  250 (307)
T d1yp2a2         172 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI  250 (307)
T ss_dssp             SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred             cceEEECCC-CcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHH
Confidence            999999987 9999999998521                     2347889999999999876532    2345678899


Q ss_pred             HHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHHHhh
Q 018327          197 PKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSL  234 (358)
Q Consensus       197 ~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~  234 (358)
                      +.+++++ +++++.++|+|.|++||++|++|++.+++..
T Consensus       251 ~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~  289 (307)
T d1yp2a2         251 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP  289 (307)
T ss_dssp             HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSS
T ss_pred             HHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCC
Confidence            9988776 5999999999999999999999998887643

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.8e-32  Score=234.77  Aligned_cols=228  Identities=30%  Similarity=0.542  Sum_probs=181.7

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA-----------   69 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~-----------   69 (358)
                      +||||||||+|+||+|+|...||||+|++|+|||+|+|+.|.++|+++|++++++..+.+++|+.+...           
T Consensus         3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~   82 (259)
T d1tzfa_           3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE   82 (259)
T ss_dssp             CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred             ceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhcc
Confidence            489999999999999999999999999999999999999999999999999999999999999975211           


Q ss_pred             ---------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCC
Q 018327           70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEP  139 (358)
Q Consensus        70 ---------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~  139 (358)
                               .....+.+..+....++..++..+.+.+  ..+++|+++.+|.+++.++..+++.+.......+... ..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T d1tzfa_          83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV--KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPP  160 (259)
T ss_dssp             TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGT--TTSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECCC
T ss_pred             ccchhhhccccccceeEEeccccccccchhhhhhhhc--cCCCceEEeccccccccchhhhhhhhcccccceeecccccc
Confidence                     0112233444556677888888888777  4445899999999999999999998888777666665 666


Q ss_pred             CCeeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCC
Q 018327          140 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQ  219 (358)
Q Consensus       140 ~~~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t  219 (358)
                      ..++......  .++..+.+.+. ..+.+..+|+|++++++++.+.....++..++++.|+++++++++.++++|.|+||
T Consensus       161 ~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt  237 (259)
T d1tzfa_         161 GRFGALDIQA--GQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDT  237 (259)
T ss_dssp             CCSEEEEEET--TEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCS
T ss_pred             ccCCceeccc--ceEEeeeeccc-cceeeecceeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCC
Confidence            6777666554  57776666554 45678999999999999999988888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 018327          220 PRDYITGLRLYLDS  233 (358)
Q Consensus       220 ~~dy~~a~~~~l~~  233 (358)
                      ++||..+++.+.+.
T Consensus       238 ~~d~~~~~~~~~~~  251 (259)
T d1tzfa_         238 LRDKVYLEGLWEKG  251 (259)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999877753

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=1.8e-29  Score=215.47  Aligned_cols=212  Identities=23%  Similarity=0.353  Sum_probs=162.6

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |+|||||||.|+||+|+|...||+|+|++|+|||+|+|+.|.++|+++|+|++++..+.+..+..    .+++++.+..+
T Consensus         4 mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~----~~~i~i~~~~~   79 (229)
T d1jyka_           4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKE----KYGVRLVFNDK   79 (229)
T ss_dssp             CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHH----HHCCEEEECTT
T ss_pred             eeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhh----hcccccccccc
Confidence            89999999999999999999999999999999999999999999999999999987676643333    34788888888


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                      .++.|++++++.+.+.+  +.  +|++..+|.++...+...+      .....+.+  .++..++.+..+++ +++..+.
T Consensus        80 ~~~~Gt~~sl~~a~~~l--~~--~~ii~~dd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~  148 (229)
T d1jyka_          80 YADYNNFYSLYLVKEEL--AN--SYVIDADNYLFKNMFRNDL------TRSTYFSVYREDCTNEWFLVYGDD-YKVQDII  148 (229)
T ss_dssp             TTTSCTHHHHHTTGGGC--TT--EEEEETTEEESSCCCCSCC------CSEEEEECEESSCSSCCEEEECTT-CBEEEEE
T ss_pred             ccccccccccccchhhh--cc--cccccccccccccchhhhh------hccccceeeeeeccccceeEEccC-CceeeEE
Confidence            88899999999999887  32  6777666666554443211      11222222  67778888888887 8999998


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhcc---------C-CCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIE---------L-RPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGL  227 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~---------~-~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy~~a~  227 (358)
                      ++|.   +.+..+|+|++++...+.+.         . ....+..+++..++++..++.+...+ .|.+++|++||.+++
T Consensus       149 ~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~  225 (229)
T d1jyka_         149 VDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE  225 (229)
T ss_dssp             CCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHH
T ss_pred             Eecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHH
Confidence            8764   45677899999987655331         1 11223345667777777888887765 699999999999997


Q ss_pred             HHH
Q 018327          228 RLY  230 (358)
Q Consensus       228 ~~~  230 (358)
                      +.+
T Consensus       226 ~~~  228 (229)
T d1jyka_         226 EIL  228 (229)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            654

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.4e-29  Score=217.29  Aligned_cols=220  Identities=25%  Similarity=0.360  Sum_probs=156.9

Q ss_pred             Ce--EEEEecCCccccCcC-CCCCCCccccc-CCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEE
Q 018327            1 MK--ALILVGGFGTRLRPL-TLSVPKPLVEF-ANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         1 m~--avIla~G~g~rl~~~-t~~~pK~llpi-~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i   75 (358)
                      |+  |||||||.|+||||+ +..+||+|+|+ +|+|||+|+++++... +.+++++++++..+.+.++..     .+..+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i   75 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYA-----DGIRL   75 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGC-----SSSEE
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhc-----cccce
Confidence            77  899999999999999 67889999997 6799999999998874 578899999887666554332     23443


Q ss_pred             EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCH--HHHHHHH---HhcCCeeEEEe---cCCCCeeeEEE
Q 018327           76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPF--AEMIEFH---KAHGGEASIMV---DEPSKYGVVVM  147 (358)
Q Consensus        76 ~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l--~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~  147 (358)
                        +.+..+.|++.++..+...+....++.++|++||.++..++  ...+..+   .+++..+++.+   +.+..||++..
T Consensus        76 --i~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~  153 (268)
T d2cu2a2          76 --LLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL  153 (268)
T ss_dssp             --EEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred             --eeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEe
Confidence              34566778888888776554333445899999999987663  3344432   23444555555   66789999998


Q ss_pred             cCCCC---cEEEEeecCCCC-------CCCeEEEEEEEEChhhhhhccCC-------------CCCcccchHHH------
Q 018327          148 EESTG---KVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRIELR-------------PTSIEKEVFPK------  198 (358)
Q Consensus       148 d~~~~---~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~~l~~~-------------~~~~~~d~l~~------  198 (358)
                      +++.+   +|..|.|||...       .+.++++|+|+|+++.+......             ......+.++.      
T Consensus       154 ~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSi  233 (268)
T d2cu2a2         154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI  233 (268)
T ss_dssp             EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred             ccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccc
Confidence            76422   799999999721       34689999999999877432110             00111122221      


Q ss_pred             ----HHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327          199 ----IALEGKLFAMVLPGFWMDIGQPRDYITGL  227 (358)
Q Consensus       199 ----l~~~~~v~~~~~~~~~~di~t~~dy~~a~  227 (358)
                          |.+..++.+++++++|.|++|.+++.+..
T Consensus       234 DyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (268)
T ss_dssp             HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             hhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence                22445699999999999999999998764

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.94  E-value=1.3e-25  Score=193.63  Aligned_cols=221  Identities=23%  Similarity=0.318  Sum_probs=169.5

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||||.|+||+|   ..||||+|++|+|||+|+++.|.++|++++++++++..+....+...     ...  +....
T Consensus         3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~-----~~~--~~~~~   72 (250)
T d1g97a2           3 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTE--FVTQS   72 (250)
T ss_dssp             EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTT-----TSE--EEECS
T ss_pred             EEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhccc-----ccc--ccccc
Confidence            499999999999999   68999999999999999999999999999999999987766666543     122  23455


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~  157 (358)
                      .+.|+..++..+...+.....+.+++..+|. +...+++.+++.+.......++..   ..+..++.+..+.. ..+..+
T Consensus        73 ~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~  151 (250)
T d1g97a2          73 EQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRI  151 (250)
T ss_dssp             SCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEEE
T ss_pred             cccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeec-eEEEEe
Confidence            6678989999988888654442344444444 445569999999999888887776   56677888777765 788888


Q ss_pred             eecCCC----CCCCeEEEEEEEEChhhhhhcc----C---CCCCcccchHHHHHhcC-ceEEEeecCeEEe--cCCHHHH
Q 018327          158 VEKPKL----FVGNKINAGIYLLNPAVLDRIE----L---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMD--IGQPRDY  223 (358)
Q Consensus       158 ~ek~~~----~~~~~~~~Giy~~~~~~l~~l~----~---~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~d--i~t~~dy  223 (358)
                      .+++..    ....+..+|+|+|+...+....    .   ....+..++++.+.+.+ ++.++..+++|.+  ++|++|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL  231 (250)
T d1g97a2         152 VEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVAL  231 (250)
T ss_dssp             ECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHH
T ss_pred             eccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHH
Confidence            887653    2567899999999987665332    1   12334567888888776 5889999998865  7899999


Q ss_pred             HHHHHHHHHh
Q 018327          224 ITGLRLYLDS  233 (358)
Q Consensus       224 ~~a~~~~l~~  233 (358)
                      ..|.+.+.++
T Consensus       232 ~~ae~~~~~~  241 (250)
T d1g97a2         232 ATAESVMRRR  241 (250)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887776654

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.2e-24  Score=184.68  Aligned_cols=219  Identities=25%  Similarity=0.333  Sum_probs=156.9

Q ss_pred             CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      |++||||||.|+||+|   ++||||+|++|+|||+|+|+.|...|+++++|++++..+.+..+..+      ....+..+
T Consensus         3 MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~------~~~~~~~~   73 (248)
T d2oi6a2           3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD------DNLNWVLQ   73 (248)
T ss_dssp             EEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC------TTEEEEEC
T ss_pred             ceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeeccc------cccccccc
Confidence            8999999999999998   78999999999999999999999999999999999987777766544      23344556


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHh-cCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA-HGGEASIMV---DEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~  156 (358)
                      ..+.|+++++..+.+.+  ..+.++++..+|.++... ..+...+.. .....+++.   .++..++.+..+.  ++...
T Consensus        74 ~~~~g~~~~~~~~~~~i--~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  148 (248)
T d2oi6a2          74 AEQLGTGHAMQQAAPFF--ADDEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITREN--GKVTG  148 (248)
T ss_dssp             SSCCCHHHHHHHHGGGS--CTTSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECSCCTTSCEEEEET--TEEEE
T ss_pred             ccCcccHHHHHhhhhhh--ccccceeeecCccccccc-hhHHHHHHHhhccccceeEEEecCCcccccccccc--Cccce
Confidence            77889999999999988  344488888888865432 222222222 223333333   6777787777665  55555


Q ss_pred             EeecCC----CCCCCeEEEEEEEEChhhhhh-cc---CC---CCCcccchHHHHHhcC-ceEEEeecCeEE--ecCCHHH
Q 018327          157 FVEKPK----LFVGNKINAGIYLLNPAVLDR-IE---LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWM--DIGQPRD  222 (358)
Q Consensus       157 ~~ek~~----~~~~~~~~~Giy~~~~~~l~~-l~---~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~--di~t~~d  222 (358)
                      +.+++.    .....+..+|.|.|+.+.+.. +.   ..   ...+..|+++.+++.+ .+..+..+++|-  .++||+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eD  228 (248)
T d2oi6a2         149 IVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQ  228 (248)
T ss_dssp             EECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHH
T ss_pred             eeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHH
Confidence            544322    235567899999999876643 22   11   1223467888888876 477777777663  3889999


Q ss_pred             HHHHHHHHHHh
Q 018327          223 YITGLRLYLDS  233 (358)
Q Consensus       223 y~~a~~~~l~~  233 (358)
                      +.+|.+.+..+
T Consensus       229 L~~ae~i~~~~  239 (248)
T d2oi6a2         229 LSRLERVYQSE  239 (248)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998766543

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=2.7e-16  Score=132.21  Aligned_cols=210  Identities=13%  Similarity=0.078  Sum_probs=126.5

Q ss_pred             Ce-EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327            1 MK-ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~-avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~   78 (358)
                      |+ |||||||.|+||+.   ..||+|++++|+|||+|+|+.+.+++ +++|+|+++....   +++.... .....+.+.
T Consensus         3 M~iAIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~---~~~~~~~-~~~~~~~~~   75 (221)
T d1vpaa_           3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWF---EVVEKRV-FHEKVLGIV   75 (221)
T ss_dssp             CEEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGH---HHHHTTC-CCTTEEEEE
T ss_pred             CeEEEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhh---hHHHhhh-ccccccccc
Confidence            55 69999999999975   78999999999999999999999875 8999999875432   2333211 112233332


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEK  156 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~  156 (358)
                      ..  ..+...+...+...+.....+.++++.||..+ + ..+..+++.+.+.........  ... .+...+.  ++...
T Consensus        76 ~~--~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~~~--~~d-~~~~~~~--~~~~~  148 (221)
T d1vpaa_          76 EG--GDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLALK--NSD-ALVRVEN--DRIEY  148 (221)
T ss_dssp             EC--CSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEEEE--CCS-EEEEEET--TEEEE
T ss_pred             cc--cccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhccccccccccc--ccc-eeEeecC--cccee
Confidence            22  23445666666666544444589999999843 3 347888888776543222221  111 1222222  22222


Q ss_pred             EeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      +.     ....+...+.+.|+.+.+....+....+ .|....+...+ ++..+.-+.....++||+|+..|...+
T Consensus       149 ~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~ll  217 (221)
T d1vpaa_         149 IP-----RKGVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA  217 (221)
T ss_dssp             EC-----CTTEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred             cc-----hHHHHHhhhhhhhhHHHHHHHHHhCCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHH
Confidence            21     1223556677788877776654443333 34444444444 455544333344689999987775443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.67  E-value=1.4e-15  Score=124.34  Aligned_cols=124  Identities=14%  Similarity=0.071  Sum_probs=78.6

Q ss_pred             EEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEE--CCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEEC
Q 018327          214 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLV--HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  290 (358)
Q Consensus       214 ~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~  290 (358)
                      ..-++++....+....+.+ ........++|.+.+.+++.+  ++++.|+++++|++++.||++|.|+.++.|. ++.|+
T Consensus        50 ~iaIG~~~~R~~~~~~~~~-~~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  128 (193)
T d3bswa1          50 FIAIGNNEIRKKIYQKISE-NGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  128 (193)
T ss_dssp             EECCSCHHHHHHHHHHHHH-TTCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEECCcHHHHHHHHHhhh-hccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence            3456666544444433332 222344455667777666666  3356666777776667777777777777666 66777


Q ss_pred             CCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          291 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       291 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +++.+++++.+.+ +.||++|+||.++.|.+++.||++++||+++++..
T Consensus       129 ~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~  177 (193)
T d3bswa1         129 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  177 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECc
Confidence            7777777777666 57777777777777777777777777776666643

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.7e-16  Score=133.80  Aligned_cols=211  Identities=13%  Similarity=0.114  Sum_probs=121.8

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .|||||||.|+||+.   +.||+|+|++|+|||+|+|+.+.++ ++++++|++++......++...  ....+.+  .. 
T Consensus         5 ~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~--~~~~v~~--~~-   76 (225)
T d1i52a_           5 CAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLA--NHPQITV--VD-   76 (225)
T ss_dssp             EEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGG--GCTTEEE--EE-
T ss_pred             EEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhc--ccccccc--cc-
Confidence            389999999999985   7999999999999999999999888 5899999998765444333222  1112222  22 


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV  158 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~  158 (358)
                       ...+..++++.+...+  .+.+.+++..+|.. . ...+..+.+..................... ....+ +......
T Consensus        77 -~~~~~~~sv~~~~~~~--~~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~-~~~~~-~~~~~~~  151 (225)
T d1i52a_          77 -GGDERADSVLAGLKAA--GDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKR-AEPGK-NAIAHTV  151 (225)
T ss_dssp             -CCSSHHHHHHHHHHTS--TTCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEECCSCEEE-ECTTS-SSEEEEE
T ss_pred             -CCcchhHHHHhhhccc--CccceeeeeccCCCCCCHHHHHHHHhhhhhcccccccccceeeccch-hcccc-ccccccc
Confidence             2234568899998888  44447778888873 3 334666666655444333333211111111 11121 3333332


Q ss_pred             ecCCCCCCCeEEEEEEEEChhhhhhccC---CCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHH
Q 018327          159 EKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL  229 (358)
Q Consensus       159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~  229 (358)
                      ++    .......+.+.|..+.+.....   .......|....+...+ ++..+.-+..-..++||+|+..|...
T Consensus       152 ~~----~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~  222 (225)
T d1i52a_         152 DR----NGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY  222 (225)
T ss_dssp             CC----TTCEEEEEEEEEEHHHHHHHHHHHHHTTCCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred             ch----HHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHH
Confidence            22    1223344566676665543321   11112245454454444 45444433222458999999888653

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.66  E-value=6.8e-16  Score=132.54  Aligned_cols=117  Identities=20%  Similarity=0.294  Sum_probs=79.7

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec----------------
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS----------------  303 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~----------------  303 (358)
                      .+++++.|++++.|++++.||++|+|+++++||++|+|+++|.|. ++.||+++.|.++++|..                
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~i   81 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELII   81 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEE
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEe
Confidence            466777888888888888888888887778888888888877777 677777777776666621                


Q ss_pred             ----------------------cEEcc------------CCEEC------------CccEEcCccEECCCcEECCceEEc
Q 018327          304 ----------------------SIIGW------------HSTVG------------QWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       304 ----------------------~~i~~------------~~~ig------------~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                                            +.+|+            ++.||            ..++|+++|+||.++.|.+++.|+
T Consensus        82 g~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG  161 (259)
T d1j2za_          82 GEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIA  161 (259)
T ss_dssp             CSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred             ccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEec
Confidence                                  11222            22222            223344455555555566666664


Q ss_pred             -CcEEccCceeccCCCCCccc
Q 018327          338 -GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 -~~~v~~~~~i~~~~~~~~~~  357 (358)
                       ++.+++++.|.+|+|+++++
T Consensus       162 ~~a~IgagSvV~kdVp~~~i~  182 (259)
T d1j2za_         162 KGCMIAGKSALGKDVPPYCTV  182 (259)
T ss_dssp             TTCEECTTCEECSBBCTTEEE
T ss_pred             cceeeeeeeeeccccccceeE
Confidence             78889999999999998875

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.65  E-value=9e-16  Score=129.33  Aligned_cols=210  Identities=13%  Similarity=0.148  Sum_probs=118.1

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .+||||||.|+||+.   ..||+|++++|+|||+|+|+.+.++. ++.|+|++++...   ++++++....+..+.+.. 
T Consensus         6 ~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~---~~~~~~~~~~~~~~~~~~-   78 (226)
T d1w77a1           6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR---DIFEEYEESIDVDLRFAI-   78 (226)
T ss_dssp             EEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGT---HHHHTTTTSCSSEEEEEC-
T ss_pred             EEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhh---hhhhcccccccccccccc-
Confidence            489999999999986   79999999999999999999999886 7888888875432   344444444455554432 


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEe-cCCCCeeeEEEcCCCCcEEEE
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMV-DEPSKYGVVVMEESTGKVEKF  157 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~v~~~  157 (358)
                       ......++++.++..+.... +.+++..||..+  ...+..+++.+.+.+....... .+....    ...+ +.....
T Consensus        79 -gg~~r~~sv~~~l~~~~~~~-~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i~~~~~~d~~~~----~~~~-~~~~~~  151 (226)
T d1w77a1          79 -PGKERQDSVYSGLQEIDVNS-ELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKE----VNSD-SLVVKT  151 (226)
T ss_dssp             -CCSSHHHHHHHHHHTSCTTC-SEEEEEETTCTTCCHHHHHHHHHHHHHHSEEEEEEECCSCCCC----BCTT-SCBC--
T ss_pred             -ccchhhhhhhhhHhhhcccc-ccceecccccccccHHHhhhhhhhhhccCceeeccccccceEE----EccC-Cceeec
Confidence             22234678888888875433 378888999833  3347888887776654333322 211111    0111 111111


Q ss_pred             eecCCCCCCCeEEEEEEEEChhhhhhcc----CCCCCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327          158 VEKPKLFVGNKINAGIYLLNPAVLDRIE----LRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  230 (358)
Q Consensus       158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~----~~~~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~  230 (358)
                      .    ........-+.+.|+.+.+....    .....+ .|....+.. +.++..+.-+..-..++||+|+..|.+.+
T Consensus       152 ~----~r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL  224 (226)
T d1w77a1         152 L----DRKTLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL  224 (226)
T ss_dssp             --------CCEEEEEEEEECHHHHHHHHHHHHHSCCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred             c----cchhhhHHHHHHhHhhHHHHHHHHHHHhcCCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence            1    11223445567888876665321    122222 222212222 33454443332334589999999996543

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.64  E-value=1.8e-15  Score=125.49  Aligned_cols=107  Identities=18%  Similarity=0.234  Sum_probs=90.0

Q ss_pred             cccCCcEEecceEECCCCEECCCcEE----CCCcEECCCCEECCCcEEe------------------------eeEECCC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS------------------------RCTVMRG  292 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i----~~~~~ig~~~~ig~~~~i~------------------------~~~i~~~  292 (358)
                      ++++++.|.+++.||+++.|+++|+|    +.+..||++|.|+++|.|.                        .+.||++
T Consensus        30 ~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~  109 (210)
T d1qrea_          30 YIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN  109 (210)
T ss_dssp             EECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTT
T ss_pred             EECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccc
Confidence            34566666666778888888888888    4577889999999999883                        4789999


Q ss_pred             cEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          293 VRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       293 ~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      |+||+++.|.+ +.||++|+||.++.+.+ +.||++++|++++.+.|+++.+++.|.
T Consensus       110 v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~g~~i~~g~~I~  165 (210)
T d1qrea_         110 VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYIP  165 (210)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEEC
T ss_pred             cccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEecCcEeCCCcEEC
Confidence            99999999975 89999999999999998 789999999999998888887777664

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.63  E-value=2.5e-15  Score=128.91  Aligned_cols=116  Identities=20%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-e------------------------------eEEC
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-R------------------------------CTVM  290 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~------------------------------~~i~  290 (358)
                      ++|++.|++++.|++++.|+++|+|++++.||++|.|+++|.|. +                              ..||
T Consensus         8 I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v~IG   87 (262)
T d2jf2a1           8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIG   87 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEEEEC
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceEEEC
Confidence            45555555555555555555555555555555555555555554 2                              2345


Q ss_pred             CCcEECCCcEEec--------------------cEEccCCEECCccEEcCc------cEECCCcEECCceE------Ec-
Q 018327          291 RGVRIKKHACISS--------------------SIIGWHSTVGQWARVENM------TILGEDVHVCDEIY------SN-  337 (358)
Q Consensus       291 ~~~~i~~~~~i~~--------------------~~i~~~~~ig~~~~i~~~------~~i~~~~~i~~~~~------i~-  337 (358)
                      +++.|++++.+..                    +.|+++|.||+++.+.++      ++||++|.||.++.      |+ 
T Consensus        88 ~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~  167 (262)
T d2jf2a1          88 DRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGA  167 (262)
T ss_dssp             SSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeeh
Confidence            5555555555432                    233444444444443332      33333333333333      32 


Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++.++.++.|.+|+|+++++
T Consensus       168 ~a~igagS~Vtkdvp~~~~~  187 (262)
T d2jf2a1         168 HVMVGGCSGVAQDVPPYVIA  187 (262)
T ss_dssp             TCEECSSCEECSBBCTTEEE
T ss_pred             hceeeccceEeecCCccccc
Confidence            46778889999999998765

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9.5e-16  Score=105.25  Aligned_cols=72  Identities=13%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCc
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW  315 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~  315 (358)
                      +...+.+++.||+++.|+++++|.+++.||++|+||++|.|.+|.|+++++|+++|+|++++|+++|.||++
T Consensus         7 ~~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1           7 ARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             CeEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            345578888888888888888888888888888888888888888888888888888888888888888763

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.61  E-value=8.6e-14  Score=118.39  Aligned_cols=215  Identities=20%  Similarity=0.198  Sum_probs=140.0

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      |||+|.+.++|+..      |+|++++|+|||+|+++.+..++ +++|+|+++.  +++......    ++..+......
T Consensus         5 ~iIpAR~~SkRl~~------Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~~~----~~~~~~~~~~~   72 (245)
T d1h7ea_           5 IVIPARYGSSRLPG------KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA----FGGKAIMTRND   72 (245)
T ss_dssp             EEEECCSCCSSSTT------GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH----TTCEEEECCSC
T ss_pred             EEEcCCCCCcCCCC------ccccccCCccHHHHHHHHHHhCCCCCeEEEeccc--ccchhhhhh----cCceEEEecCc
Confidence            78999999999844      99999999999999999998885 7888877764  444444443    35666554333


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHhcCCeeEEEe---------cCCCCeeeEEEcCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMV---------DEPSKYGVVVMEES  150 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~  150 (358)
                      . .++..++..+...+  .. +.++.+.+|..+.  ..+..+++.+...........         ..+... .......
T Consensus        73 ~-~~~~~~~~~~~~~~--~~-d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-k~~~~~~  147 (245)
T d1h7ea_          73 H-ESGTDRLVEVMHKV--EA-DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTV-KVVVNTR  147 (245)
T ss_dssp             C-SSHHHHHHHHHHHS--CC-SEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSC-EEEECTT
T ss_pred             c-ccccHHHHHHHHhc--CC-CEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcce-eeccchh
Confidence            3 34456666777776  33 3778889999543  347888887776655433332         111111 1222232


Q ss_pred             CCcEEEEeecCCCC------CCCeEEEEEEEEChhhhhhccCCCCC-cc----cchHHHHHhcCceEEEeecCeEEecCC
Q 018327          151 TGKVEKFVEKPKLF------VGNKINAGIYLLNPAVLDRIELRPTS-IE----KEVFPKIALEGKLFAMVLPGFWMDIGQ  219 (358)
Q Consensus       151 ~~~v~~~~ek~~~~------~~~~~~~Giy~~~~~~l~~l~~~~~~-~~----~d~l~~l~~~~~v~~~~~~~~~~di~t  219 (358)
                       +....+...+...      .......|+|.|+++.++.+.....+ ++    -|.++.+-.+.++.....++.+.++||
T Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt  226 (245)
T d1h7ea_         148 -QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDT  226 (245)
T ss_dssp             -CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSS
T ss_pred             -hhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCC
Confidence             5566665544321      23357889999999998865432211 11    134554445557888888888899999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 018327          220 PRDYITGLRLYLDSLR  235 (358)
Q Consensus       220 ~~dy~~a~~~~l~~~~  235 (358)
                      ++||..+...+..+..
T Consensus       227 ~~Dl~~a~~il~~~~~  242 (245)
T d1h7ea_         227 PACLEKVRALMAQELA  242 (245)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999777665543

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.59  E-value=1.1e-13  Score=117.78  Aligned_cols=214  Identities=18%  Similarity=0.163  Sum_probs=138.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      -|||+|.|.++|+.-      |.|.+++|+|||+|+++.+..+++++|+|.++.  +++.++..++    |..+.+....
T Consensus         3 i~iIpAR~gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsTd~--~~i~~~~~~~----g~~v~~~~~~   70 (246)
T d1vh1a_           3 VVIIPARYASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVATDH--EDVARAVEAA----GGEVCMTRAD   70 (246)
T ss_dssp             EEEEECCCCCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT----TCEEEECC--
T ss_pred             EEEEecCCCCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEecC--ccccchhhcc----cccceeeccc
Confidence            489999999999844      999999999999999999999999999998875  5666666553    6677666555


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEe---cCC-----CCeeeEEEcCCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMV---DEP-----SKYGVVVMEEST  151 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~d~~~  151 (358)
                      ...++ ++...+.........+.++.+.+|..+  ..++..+++.+.....+....+   ...     ...--...+.+ 
T Consensus        71 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~-  148 (246)
T d1vh1a_          71 HQSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE-  148 (246)
T ss_dssp             ---CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred             ccccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc-
Confidence            54444 344444444432333478888999954  3347888888887766554443   111     11112334555 


Q ss_pred             CcEEEEeecCC-------------CCCCCeEEEEEEEEChhhhhhccCCCCC-cc----cchHHHHHhcCceEEEeecC-
Q 018327          152 GKVEKFVEKPK-------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IE----KEVFPKIALEGKLFAMVLPG-  212 (358)
Q Consensus       152 ~~v~~~~ek~~-------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~----~d~l~~l~~~~~v~~~~~~~-  212 (358)
                      +++..+.+.+.             .....+...|+|+|++..+........+ .+    -|.++.+.....+..+..+. 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~  228 (246)
T d1vh1a_         149 GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEV  228 (246)
T ss_dssp             SBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred             CcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCC
Confidence            78887765432             1233467899999999988765322111 11    13455554455687777665 


Q ss_pred             eEEecCCHHHHHHHHHH
Q 018327          213 FWMDIGQPRDYITGLRL  229 (358)
Q Consensus       213 ~~~di~t~~dy~~a~~~  229 (358)
                      ...||||++|+..+.+.
T Consensus       229 ~~~~IDt~~Dl~~a~k~  245 (246)
T d1vh1a_         229 PGTGVDTPEDLERVRAE  245 (246)
T ss_dssp             CCCCCCSHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHhc
Confidence            46799999999888653

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.59  E-value=7.9e-15  Score=123.46  Aligned_cols=209  Identities=15%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      |||||||.|+||+.   ..||+|++++|+|||+|+++.+.+++ ++.++||+++. +.+.+++.....  .... +.  .
T Consensus         6 AIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~~--~~~~-~~--~   76 (226)
T d1vgwa_           6 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAFP--QVRV-WK--N   76 (226)
T ss_dssp             EEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHCT--TSEE-EC--C
T ss_pred             EEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchh-hhhhhhhccccc--ceee-cc--c
Confidence            89999999999974   78999999999999999999999987 67777777654 344455544211  1221 11  1


Q ss_pred             CcCCCchHHHHHHhhc----cCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEE
Q 018327           82 EPLGTAGPLALARDKL----IDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVE  155 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i----~~~~~~~~lv~~gD~-i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~  155 (358)
                      ......+++..+...+    .....+.+++.++|. +. ...+..+++.+........+.....  ......+.  +.+.
T Consensus        77 g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~~~~~--~~~~~~~~--~~i~  152 (226)
T d1vgwa_          77 GGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILAVPVA--DTLKRAES--GQIS  152 (226)
T ss_dssp             CCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEEEECC--SCEEEESS--SBEE
T ss_pred             cccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeeccccc--ccceeccC--CeEE
Confidence            2222334444443322    222333677888887 33 3448888888877666554443211  12222232  5666


Q ss_pred             EEeecCCCCCCCeEEEEEEEEChhhhhh-ccCCCCCcccchHHHHHhc-CceEEEeecCeEEecCCHHHHHHHHH
Q 018327          156 KFVEKPKLFVGNKINAGIYLLNPAVLDR-IELRPTSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLR  228 (358)
Q Consensus       156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~-l~~~~~~~~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~  228 (358)
                      ...++..    -.....-..|..+.+.. +.........|....+... .++..+.-+.....++||+|+..|..
T Consensus       153 ~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~  223 (226)
T d1vgwa_         153 ATVDRSG----LWQAQTPQLFQAGLLHRALAAENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL  223 (226)
T ss_dssp             EEECCTT----EEEEEEEEEEEHHHHHHHHHC----CCCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             eccchHH----HHHHHhhhcccHHHHHHHHHHhhcCCCCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence            5554322    11111224555454432 2222211113433334333 34655544444567999999988754

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=1.5e-13  Score=117.52  Aligned_cols=216  Identities=16%  Similarity=0.147  Sum_probs=141.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||+|.|.++|+..      |.|.+++|+|||+|+++.+.++++++|+|+++.  +++.+...+    ++..+.+....
T Consensus         3 ~~iIpAR~gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~~----~~~~~~~~~~~   70 (255)
T d1vica_           3 TVIIPARFASSRLPG------KPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKS----FGAEVCMTSVN   70 (255)
T ss_dssp             EEEEECCCCCSSSTT------GGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH----TTCEEEECCCS
T ss_pred             EEEEecCCCCCCCCC------chhhhhCCcCHHHHHHHHHHHCCCCeEEEEcCC--cccchhhhh----hccccceeeec
Confidence            589999999999833      999999999999999999999999998887765  455555444    36667666666


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHhcCCeeEEEe--------cCCCCeeeEEEcCCC
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMV--------DEPSKYGVVVMEEST  151 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~  151 (358)
                      ...++............ ...+.++.+.||..+.  .++..+++.+.......+...        ...........+.+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~-~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  148 (255)
T d1vica_          71 HNSGTERLAEVVEKLAI-PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD-  148 (255)
T ss_dssp             SCCHHHHHHHHHHHTTC-CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred             cCCcchhhHHHHHHhhc-cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccC-
Confidence            55555444444443332 3333678889999443  347888888877766655544        11122223444554 


Q ss_pred             CcEEEEeecCC-----------------CCCCCeEEEEEEEEChhhhhhccCCCCC-cc----cchHHHHHhcCceEEEe
Q 018327          152 GKVEKFVEKPK-----------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IE----KEVFPKIALEGKLFAMV  209 (358)
Q Consensus       152 ~~v~~~~ek~~-----------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~----~d~l~~l~~~~~v~~~~  209 (358)
                      +++..+.+.+.                 .........|+|+|++..+..+.....+ .+    -+.++.+.....+..+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~  228 (255)
T d1vica_         149 GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVEL  228 (255)
T ss_dssp             SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred             CcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEE
Confidence            77777765432                 1123356789999999988765322111 11    12344444455677666


Q ss_pred             ecC-eEEecCCHHHHHHHHHHHH
Q 018327          210 LPG-FWMDIGQPRDYITGLRLYL  231 (358)
Q Consensus       210 ~~~-~~~di~t~~dy~~a~~~~l  231 (358)
                      .+. .+.||||++||..|...+.
T Consensus       229 ~~~~~~idIDt~eDl~~ae~ilk  251 (255)
T d1vica_         229 AKEVPAVGVDTAEDLEKVRAILA  251 (255)
T ss_dssp             CSSCCCCCCCSHHHHHHHHHHHH
T ss_pred             eCCCCCcCCCCHHHHHHHHHHHH
Confidence            654 5789999999999976543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=2.5e-14  Score=117.50  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             CccEECCCcEECCceEEc-CcEEccCceeccCCCCCcccC
Q 018327          320 NMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       320 ~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      +++++|.++.|.+++.|+ ++++++++.|.||+|+++++.
T Consensus       147 ~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~  186 (196)
T d1g97a1         147 NNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAI  186 (196)
T ss_dssp             TTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             cCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEE
Confidence            345555555555556674 778899999999999998763

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.56  E-value=1e-14  Score=120.94  Aligned_cols=95  Identities=13%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEE----e-eeEECCCcEECCCcEEe------------------------c
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRL----S-RCTVMRGVRIKKHACIS------------------------S  303 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i----~-~~~i~~~~~i~~~~~i~------------------------~  303 (358)
                      .|+|++.|+++++|.+++.||++|.||++|.|    . +..||++|.|+++|+|.                        +
T Consensus        24 ~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (210)
T d1qrea_          24 VIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYA  103 (210)
T ss_dssp             EECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEES
T ss_pred             ccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccc
Confidence            34444444444444445555555666666555    2 45677777777777773                        3


Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      +.||++|+||.++.|.++|.||+++.||+++++.++.++.+..|
T Consensus       104 ~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vI  147 (210)
T d1qrea_         104 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVL  147 (210)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEE
T ss_pred             eeeccccccccccccccCCcccCCcEeeCCccccccccccCcEE
Confidence            67999999999999988899999999999998876666555554

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.54  E-value=3.3e-14  Score=117.95  Aligned_cols=116  Identities=12%  Similarity=0.160  Sum_probs=94.5

Q ss_pred             cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEecc---------EEccCC
Q 018327          241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSS---------IIGWHS  310 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~---------~i~~~~  310 (358)
                      ++.|++.++..++|++++.+.+ +++..+++||++|.|..++.|+ .+.||++|+|+.++.|.+.         +|+++|
T Consensus       104 RvvPga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~  182 (274)
T d3tdta_         104 RVVPPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNC  182 (274)
T ss_dssp             EECTTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTC
T ss_pred             EeCCCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCc
Confidence            4668888889999999987765 6888899999999999999999 5789999999999999873         599999


Q ss_pred             EECCccEEcCccEECCCcEECCceEEcCcE-E---ccCceeccCCCCCccc
Q 018327          311 TVGQWARVENMTILGEDVHVCDEIYSNGGV-V---LPHKEIKSSILKPEIV  357 (358)
Q Consensus       311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~-v---~~~~~i~~~~~~~~~~  357 (358)
                      .||+++.+..+++||++++|++|+++..++ +   ..+....+++|+++||
T Consensus       183 ~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~d~~~g~~~~g~vP~~svv  233 (274)
T d3tdta_         183 FIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVV  233 (274)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCCEEETTTCCEESSEECTTEEE
T ss_pred             EeccCceEecCEEecCceEeccceEEeccccceeccCCcEeccccCCCCEE
Confidence            999999999999999999999999997541 1   2233334446666554

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.52  E-value=5.7e-14  Score=120.31  Aligned_cols=78  Identities=24%  Similarity=0.333  Sum_probs=66.6

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-----------------
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-----------------  303 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-----------------  303 (358)
                      +++.+.|+|+++|+++++||+++.|+++++|+++|+||++|+|+ +++|++++.|++++.+..                 
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~   81 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEP   81 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccC
Confidence            46789999999999999999999999999999999999999999 899999999988888744                 


Q ss_pred             --cEEccCCEECCccEEc
Q 018327          304 --SIIGWHSTVGQWARVE  319 (358)
Q Consensus       304 --~~i~~~~~ig~~~~i~  319 (358)
                        ..||+++.|++++.+.
T Consensus        82 ~~v~IG~~v~ig~~~~i~   99 (262)
T d2jf2a1          82 TRVEIGDRNRIRESVTIH   99 (262)
T ss_dssp             CEEEECSSCEECTTCEEE
T ss_pred             ceEEECCeeeecceEecc
Confidence              3567777766666654

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.2e-14  Score=97.50  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             EECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327          265 LIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  332 (358)
Q Consensus       265 ~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~  332 (358)
                      .|.+++.||++|.|++++.|. ++.||++|.||++|.|.++.|++++.|++++.|.+ ++||++++||+
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~-~~Ig~~~~IGP   77 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-ANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEES-EEECTTCEESC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEEC-CEECCCCEECc
Confidence            466788899999999999999 79999999999999999999999999999999987 99999999986

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6.2e-14  Score=114.30  Aligned_cols=107  Identities=23%  Similarity=0.293  Sum_probs=73.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||||+|+||+.    .||+|++++|+|||+|+++.+... +.+++|+++...+..    .    ..+..+......
T Consensus         5 ~~iILAgG~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~~----~----~~~~~v~~d~~~   71 (188)
T d1e5ka_           5 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIY----Q----ASGLKVIEDSLA   71 (188)
T ss_dssp             EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHHH----H----TTSCCEECCCTT
T ss_pred             eEEEEcCCCCcCCCC----CCcccCEECCEehhHHHHhhhccc-ccccccccCccHHhh----h----hcCCCccccccc
Confidence            489999999999964    489999999999999999999876 667777777653321    1    223444333333


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHH
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEF  124 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~  124 (358)
                      ...+....+..+....  .. +.+++++||..+ ..+ ++.+++.
T Consensus        72 ~~~~~~~g~~~~~~~~--~~-~~vlv~~~D~P~i~~~~i~~L~~~  113 (188)
T d1e5ka_          72 DYPGPLAGMLSVMQQE--AG-EWFLFCPCDTPYIPPDLAARLNHQ  113 (188)
T ss_dssp             CCCSHHHHHHHHHHHC--CS-SEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             cccchhHHHHHHHHhc--cc-ceEEEeccCCCCCCHHHHHHHHHh
Confidence            3345556666666554  33 489999999943 444 5665553

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=1.8e-13  Score=117.19  Aligned_cols=43  Identities=12%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      +.||++|+||.++.|.+++.||+++.||+++.|...+ -|+..+
T Consensus       140 v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kdV-p~~~i~  182 (259)
T d1j2za_         140 IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDV-PPYCTV  182 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEECSBB-CTTEEE
T ss_pred             ccccccceecceeeeecccEeccceeeeeeeeecccc-ccceeE
Confidence            5688888888888888888888888888888886543 444444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.46  E-value=4.3e-13  Score=107.55  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=81.5

Q ss_pred             ccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-----eEECCCcEECCCcEEeccEEccCCEEC
Q 018327          242 LATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHSTVG  313 (358)
Q Consensus       242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~ig  313 (358)
                      +.+.+.|.+++.||+++.|+++++|+..   ..||+++.+++++.+..     +++++++.+.+.+.+.++.|+++++||
T Consensus        21 I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~ig  100 (172)
T d1xhda_          21 IADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIG  100 (172)
T ss_dssp             ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEEC
T ss_pred             ECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEEe
Confidence            4555555566666666666666666432   47778888888887762     678888888888888889999999999


Q ss_pred             CccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327          314 QWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK  348 (358)
Q Consensus       314 ~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~  348 (358)
                      .++.|.+++.||++|+|++++.|.. ..+.|++.+.
T Consensus       101 ~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~  136 (172)
T d1xhda_         101 MGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAF  136 (172)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTEEEE
T ss_pred             cccEeeCCcEEcCcccccceEEEeeCeEECCCeEEE
Confidence            9999999999999999999999864 4555665553

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.9e-14  Score=120.38  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=82.6

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET   81 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~   81 (358)
                      .|||||||+|+||++++. .||+|+|++|+|||+|+++.+..++++.+++++++....          .  ..   ....
T Consensus         4 ~avIlA~G~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~----------~--~~---~~~~   67 (231)
T d2dpwa1           4 SAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP----------A--PA---LTLP   67 (231)
T ss_dssp             EEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS----------C--CS---EEEC
T ss_pred             eEEEECCCCCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeeccccc----------e--ee---eecc
Confidence            499999999999998774 489999999999999999999999999998888764221          0  00   1123


Q ss_pred             CcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhc
Q 018327           82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAH  128 (358)
Q Consensus        82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~  128 (358)
                      ...|..++++.+++.+  .  +++++++||..  ....++.+++.+.+.
T Consensus        68 ~~~~~~~~v~~al~~~--~--~~~lv~~~D~P~i~~~~i~~l~~~~~~~  112 (231)
T d2dpwa1          68 DRGGLLENLEQALEHV--E--GRVLVATGDIPHLTEEAVRFVLDKAPEA  112 (231)
T ss_dssp             CCSSHHHHHHHHHHTC--C--SEEEEEETTCTTCCHHHHHHHHHHCCSC
T ss_pred             cchHHHHHHHHHHHhh--c--CceEEeeCCCccCCHHHHHHHHHHhhhc
Confidence            4568889999999887  2  38999999993  334478888765443

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.2e-13  Score=108.69  Aligned_cols=87  Identities=17%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             ceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEcCccEECC
Q 018327          251 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGE  326 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~  326 (358)
                      ++.||+++.|+.+|+|.  ....||++|.|+++|.|. ++.+++.+....++.+.. +.||++|+||.++.|.+|+.||+
T Consensus        72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~  151 (182)
T d1ocxa_          72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD  151 (182)
T ss_dssp             TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECC
Confidence            34444444444444442  233555555555555555 444555555555555554 46777777777777777777777


Q ss_pred             CcEECCceEEc
Q 018327          327 DVHVCDEIYSN  337 (358)
Q Consensus       327 ~~~i~~~~~i~  337 (358)
                      +++||+++++.
T Consensus       152 ~~vIgagsvV~  162 (182)
T d1ocxa_         152 NVVVASGAVVT  162 (182)
T ss_dssp             TCEECTTCEEC
T ss_pred             CCEECCCCEEc
Confidence            77776666654

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.5e-13  Score=112.31  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=25.0

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  338 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~  338 (358)
                      +.|+++|+||.++.|.+|+.||++|+|++++++..
T Consensus       131 v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~k  165 (200)
T d1krra_         131 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK  165 (200)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EEEccCcccceeeecccccccCCCcEEeCCCEEee
Confidence            35777777777777777777777777777777653

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=8.9e-13  Score=108.54  Aligned_cols=42  Identities=7%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             EEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCcccC
Q 018327          317 RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       317 ~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      .|++++++|.++.|.+++.++ ++++++++.|.+|+|++++++
T Consensus       145 ~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~v  187 (201)
T d2oi6a1         145 IIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAI  187 (201)
T ss_dssp             EECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             EeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEE
Confidence            455566666666666677775 788899999999999998754

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.42  E-value=1.2e-12  Score=106.62  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             CCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327          244 TGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  320 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~  320 (358)
                      ..+.++|++.|++++.|+.  ++.|.++++|+++|+||++|.|. +++|+++|.|+++|.+     ++++.++.+++|++
T Consensus        73 ~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i-----~~~~~i~g~v~Ig~  147 (193)
T d3bswa1          73 IVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHV-----SVGAKCAGNVKIGK  147 (193)
T ss_dssp             BCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE-----CTTCEECTTCEECT
T ss_pred             cceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccc-----cccccccccceeec
Confidence            3456677777777777743  56666666777776666666665 5556655555555555     44555555555555


Q ss_pred             ccEECCCcEECCceEEc-CcEEccCceeccCCCCCcccC
Q 018327          321 MTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIVM  358 (358)
Q Consensus       321 ~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~~  358 (358)
                      +|+||.++.|.+++.|+ ++.+++++.|.+|+|++++++
T Consensus       148 ~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~  186 (193)
T d3bswa1         148 NCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFV  186 (193)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEEC
T ss_pred             cccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEEE
Confidence            55566666666666663 566777889999999998864

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.41  E-value=1.1e-12  Score=105.03  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             ceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec-----cEEccCCEECCccEEc--
Q 018327          251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVE--  319 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~--  319 (358)
                      ...|++++.|+++++|.+++.||++|.|+.+|.|.    ...||+++.+++++.+..     +++++++.++.++.+.  
T Consensus        12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~   91 (172)
T d1xhda_          12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSC   91 (172)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESC
T ss_pred             CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccc
Confidence            35677777777777777777888888888888885    368999999999988876     4677777666555543  


Q ss_pred             ---CccEECCCcEECCceEEc-CcEEccCceec--cCCCCCccc
Q 018327          320 ---NMTILGEDVHVCDEIYSN-GGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       320 ---~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~--~~~~~~~~~  357 (358)
                         +++.+|.++.|.+++.|+ ++.+++++.|.  +++|+++++
T Consensus        92 ~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~  135 (172)
T d1xhda_          92 HIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLA  135 (172)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             ccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEE
Confidence               345555555555556664 66777777776  468888765

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.3e-12  Score=106.60  Aligned_cols=89  Identities=11%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEecc-E------EccCCEECCccEEcCccEECCCcEECCceEEc-
Q 018327          269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISSS-I------IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-  337 (358)
Q Consensus       269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~~-~------i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-  337 (358)
                      ++.||++|.|+.+|.|.   .+.||++|.|++++.|.+. .      ...+..++..++|+++++||.+++|.+++.|+ 
T Consensus        74 nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~  153 (200)
T d1krra_          74 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD  153 (200)
T ss_dssp             TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCC
Confidence            44455555555555552   3467888888888887653 2      23334455556677777777777777777774 


Q ss_pred             CcEEccCceeccCCCCCccc
Q 018327          338 GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       338 ~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++++++++.|.+|+|+++++
T Consensus       154 ~~vIgagSvV~kdvp~~~iv  173 (200)
T d1krra_         154 NSVIGAGSIVTKDIPPNVVA  173 (200)
T ss_dssp             TCEECTTCEECSCBCTTEEE
T ss_pred             CcEEeCCCEEeeEcCCCcEE
Confidence            77778899999999998876

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.38  E-value=4.1e-12  Score=106.17  Aligned_cols=201  Identities=13%  Similarity=0.151  Sum_probs=125.8

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc-
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE-   80 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~-   80 (358)
                      |||+|.|.++|+ |     .|+|++++|+|||+|+|+.+..++ +++|+|.+..  +++.+.+.++    +..+..... 
T Consensus         7 aiIpar~~S~R~-p-----~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~--~~i~~i~~~~----~~~~~~~~~~   74 (225)
T d1eyra_           7 AVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKNF----GVEVVLRPAE   74 (225)
T ss_dssp             EEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHT----TCEEEECCHH
T ss_pred             EEEccCCCCcCC-C-----CccccccCCeEHHHHHHHHHHHcCCCceEEEeecc--chhhhhhhhh----cceeeeeccc
Confidence            799999999998 3     499999999999999999999998 6887776653  5566655543    555543332 


Q ss_pred             --CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--cCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCCCCcE
Q 018327           81 --TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEESTGKV  154 (358)
Q Consensus        81 --~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~v  154 (358)
                        ....++.+.+..+.+.+.... +.++.+.+|..+-  .++..+++.+.....+..+.+  .....+.......+ +..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~-d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~  152 (225)
T d1eyra_          75 LASDTASSISGVIHALETIGSNS-GTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINN-GEY  152 (225)
T ss_dssp             HHSTTCCHHHHHHHHHHHHTCCS-EEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECSS-SCE
T ss_pred             cccccccchhhcccccccccccc-ceEEEeeccccccccccccccceeeccccccccceeeccccccccccccccc-ccc
Confidence              222344566677777664433 3788899999443  448888888777766654444  22222222233333 555


Q ss_pred             EEEeecCC-------CCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHHH
Q 018327          155 EKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYITG  226 (358)
Q Consensus       155 ~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~a  226 (358)
                      ..+.....       .......+.++|+++.+.+..-..    +         -.+....+..+ ....|+||++||..|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~~----~---------~~~~~~~~~i~~~~~~dIdt~eDl~~a  219 (225)
T d1eyra_         153 APMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC----F---------FIAPTKLYIMSHQDSIDIDTELDLQQA  219 (225)
T ss_dssp             EESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHHTS----S---------CCSSCEEEECCTTTTCCCCSHHHHHHH
T ss_pred             cccccccccccccccCcceeeecceeEEeeHHHHHHcCC----c---------cCCCeEEEEcCccceECCCCHHHHHHH
Confidence            44432211       011124678899999887765210    0         01234444443 245799999999988


Q ss_pred             HHHH
Q 018327          227 LRLY  230 (358)
Q Consensus       227 ~~~~  230 (358)
                      ...+
T Consensus       220 e~i~  223 (225)
T d1eyra_         220 ENIL  223 (225)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.36  E-value=1.7e-12  Score=99.53  Aligned_cols=85  Identities=20%  Similarity=0.332  Sum_probs=63.3

Q ss_pred             ceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCC-------------------cEECCCcEEeccEEccCCE
Q 018327          251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHST  311 (358)
Q Consensus       251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~  311 (358)
                      ++.|++++.|. ++.+ .+|+||++|.||+++.|.+++++++                   +.||++|.|.+++|+++|.
T Consensus        14 ~s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~   91 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR   91 (135)
T ss_dssp             EEEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred             eCEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence            46677777775 3445 4788888888888888886666544                   6788888888888888888


Q ss_pred             ECCccEEcCccEECCCcEECCceEEc
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      ||+++.+.+++.+.+.+.++.++.+.
T Consensus        92 IG~g~~i~~~~~~~~~~~~~~~~~i~  117 (135)
T d1yp2a1          92 IGDNVKIINKDNVQEAARETDGYFIK  117 (135)
T ss_dssp             ECTTCEECCSSCCSCEEEGGGTEEEE
T ss_pred             ECCCcEECCCcccccceeeCCCEEEC
Confidence            88888887777776666666666664

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.34  E-value=2.5e-12  Score=105.50  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=78.5

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      .+||||||.|+||+.   +.||+|++++|+|||+|+++.+.... ++.|+|++++ .+    ++.++.+  ...+..   
T Consensus         3 s~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~~~~~--~~~~v~---   69 (205)
T d1w55a1           3 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-IT----YMKKFTK--NYEFIE---   69 (205)
T ss_dssp             EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC-HH----HHHTTCS--SSEEEE---
T ss_pred             EEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc-cc----ccccccc--cccccc---
Confidence            589999999999986   78999999999999999999998876 6777776553 22    2333222  233321   


Q ss_pred             CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHhc
Q 018327           81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAH  128 (358)
Q Consensus        81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~-~l~~~~~~~~~~  128 (358)
                       ......+|++.+++.+  +. +.+++..||. +.+. .++.+++.+.+.
T Consensus        70 -Gg~~r~~Sv~~gl~~~--~~-~~VlIhd~~rP~i~~~~i~~li~~~~~~  115 (205)
T d1w55a1          70 -GGDTRAESLKKALELI--DS-EFVMVSDVARVLVSKNLFDRLIENLDKA  115 (205)
T ss_dssp             -CCSSHHHHHHHHHTTC--CS-SEEEEEETTCTTCCHHHHHHHHTTGGGC
T ss_pred             -cccchhhhhhhhhhhh--hh-cceeeeccCcccCcHHHHHHHHhhhhcc
Confidence             2334467888888887  33 3788999999 3333 378887766543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=6.9e-12  Score=102.57  Aligned_cols=42  Identities=19%  Similarity=0.083  Sum_probs=29.3

Q ss_pred             EccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327          306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  348 (358)
Q Consensus       306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~  348 (358)
                      ||++|++|.++.|.+++.||++++||+++.+... +-|+..+.
T Consensus       145 Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkd-vp~~~i~~  186 (196)
T d1g97a1         145 IGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD-VPADAIAI  186 (196)
T ss_dssp             ECTTCEECTTCEEESSCEECTTCEECTTCEECSC-BCTTCEEC
T ss_pred             EecCCEEeeeeEEcCCcEECCCCEECCCCEECcC-cCCCCEEE
Confidence            5777777777777777888888888888887654 34444433

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=1.1e-11  Score=99.27  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=39.2

Q ss_pred             CCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327          290 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK  348 (358)
Q Consensus       290 ~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~  348 (358)
                      +.++.+........+.||++|+||.++.|.+++.||++|+|++++.+. +..+.|+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~  134 (173)
T d1v3wa_          75 GEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVL  134 (173)
T ss_dssp             CSSCEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEE
T ss_pred             CcceeeeeeeeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEc
Confidence            344444444444456778888888888888888888888888888875 44555555544

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=1.7e-11  Score=98.18  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             eEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec----------------cEEccCCE
Q 018327          252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS----------------SIIGWHST  311 (358)
Q Consensus       252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~----------------~~i~~~~~  311 (358)
                      ..|++++.|+++++|.+++.||++|.||++|.|.    +..+++++.++..+.+..                ..+...+.
T Consensus        11 ~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
T d1v3wa_          11 PRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAK   90 (173)
T ss_dssp             CEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCE
T ss_pred             CEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeee
Confidence            3555555555556665666666666666666664    356788888877777653                12233344


Q ss_pred             ECCccEEcCccEECCCcEECCceEEcCcEEccCceec--cCCCCCccc
Q 018327          312 VGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK--SSILKPEIV  357 (358)
Q Consensus       312 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~--~~~~~~~~~  357 (358)
                      ||+++.|+.+++|+.+++||+++++     ++++.|.  +++|+++++
T Consensus        91 Ig~~~~ig~~~~i~~gv~Ig~~~vI-----gagsvV~~~~~i~~~~iv  133 (173)
T d1v3wa_          91 VGNYVIIGISSVILDGAKIGDHVII-----GAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             ECSSEEECTTCEECTTCEECSSEEE-----CTTCEECTTCEECTTEEE
T ss_pred             cCCcccccceeeecCCEEEcceeEE-----cCCcEEeCCeEeCCCCEE
Confidence            5555555555555555555555544     4455554  346777664

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.29  E-value=4.1e-12  Score=97.31  Aligned_cols=27  Identities=11%  Similarity=0.312  Sum_probs=13.4

Q ss_pred             CEECCccEEcCccEECCCcEECCceEEc
Q 018327          310 STVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      +.||++++|.+ ++|+++++||+++.+.
T Consensus        73 v~Ig~~~~I~~-~iIg~~~~IG~g~~i~   99 (135)
T d1yp2a1          73 IGIGKNCHIKR-AIIDKNARIGDNVKII   99 (135)
T ss_dssp             SEECTTCEEES-EEECTTCEECTTCEEC
T ss_pred             CEECcceEecc-ceecCCCEECCCcEEC
Confidence            34555555543 5555555555555543

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=4.6e-11  Score=99.93  Aligned_cols=202  Identities=14%  Similarity=0.165  Sum_probs=120.2

Q ss_pred             eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327            2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE   80 (358)
Q Consensus         2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~   80 (358)
                      -|||+|.|.++||.      .|.|++++|+|||+|+++.+..++ +++|+|.+..  +++.+....+    ++.+.....
T Consensus         5 ~aiIpaR~~S~Rlp------~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~--~~i~~~~~~~----~~~~~~~~~   72 (228)
T d1qwja_           5 AALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDH--DEIENVAKQF----GAQVHRRSS   72 (228)
T ss_dssp             EEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHT----TCEEEECCG
T ss_pred             EEEeccCCCCCCCC------CcchhhhCCeeHHHHHHHHHHhcCCcceEEEecch--hhhhhhhhhc----Ccccccccc
Confidence            49999999999994      399999999999999999999888 7777776653  4555555543    555544332


Q ss_pred             CCc---CCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCCCCc
Q 018327           81 TEP---LGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEESTGK  153 (358)
Q Consensus        81 ~~~---~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~  153 (358)
                      ...   ....+.+..+....  ...+.++++.+|..+  ..+++.+++.+..++.+..+.+  ..+..+........ +.
T Consensus        73 ~~~~~~~~~~~~i~~~~~~~--~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~  149 (228)
T d1qwja_          73 ETSKDSSTSLDAIVEFLNYH--NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVR-EV  149 (228)
T ss_dssp             GGSSTTCCHHHHHHHHHTTC--TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCCCSSTT-CC
T ss_pred             ccccccchhhhhhhhccccc--cccceeeeecccccccCchhhhhhhhhhhccCccccccccccccccchhhhhhcc-cc
Confidence            222   23344555555444  223377788899843  3458999999888777766554  22222211111110 00


Q ss_pred             EEEEe----ecCC--CCCC-CeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHHHH
Q 018327          154 VEKFV----EKPK--LFVG-NKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYIT  225 (358)
Q Consensus       154 v~~~~----ek~~--~~~~-~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy~~  225 (358)
                      .....    ..+.  .... ...+.++|+++.+.+..-     .+         ...+...+..+. ...||||++||..
T Consensus       150 ~~~~~~~~~~~~~~qd~~~~y~~ng~~~~~k~~~~~~~-----~~---------~~~k~~~~~i~~~~~idIDt~eD~~~  215 (228)
T d1qwja_         150 TEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEMG-----YL---------QGGKMAYYEMRAEHSVDIDVDIDWPI  215 (228)
T ss_dssp             CCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHHTT-----CS---------SCSSEEEEECCGGGCCCHHHHCSHHH
T ss_pred             ccchhhhhhhccccccccceeeeeeEEEEEeHHHHhhC-----Cc---------CCCCEEEEEcCccceECCCCHHHHHH
Confidence            00000    0010  1111 134566777777766531     00         123455555543 4579999999998


Q ss_pred             HHHHHHH
Q 018327          226 GLRLYLD  232 (358)
Q Consensus       226 a~~~~l~  232 (358)
                      |.+.+..
T Consensus       216 Ae~~l~k  222 (228)
T d1qwja_         216 AEQRVLR  222 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776653

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.23  E-value=1.9e-12  Score=106.31  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=19.4

Q ss_pred             cEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          316 ARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       316 ~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      ++|+++|+||.++.|.+++.|+ ++.+++++.|.+++|+++++
T Consensus       114 v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~  156 (203)
T d1mr7a_         114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLA  156 (203)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             eEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEE
Confidence            3344444444444444444442 44444455555555555443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=7.3e-12  Score=105.06  Aligned_cols=85  Identities=19%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEE---eccEEccCCEECCccEEcCccEE
Q 018327          250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI---SSSIIGWHSTVGQWARVENMTIL  324 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~ig~~~~i~~~~~i  324 (358)
                      .++.|+|++.||+++.|.  .+.+||+++.||++|.|     .++++++.....   +..+||++|+||.+++|.+++.|
T Consensus       136 ~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~I  210 (241)
T d1ssqa_         136 FDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEV  210 (241)
T ss_dssp             HSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEE
T ss_pred             eeeccccCCEEccCcccCccceEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEEcCCcEE
Confidence            345555666666666554  25566666666666555     444444432222   23689999999999999999999


Q ss_pred             CCCcEECCceEEcCc
Q 018327          325 GEDVHVCDEIYSNGG  339 (358)
Q Consensus       325 ~~~~~i~~~~~i~~~  339 (358)
                      |++++||+++++...
T Consensus       211 G~~a~IgAgsvV~kd  225 (241)
T d1ssqa_         211 GKYAKIGANSVVLNP  225 (241)
T ss_dssp             CTTCEECTTCEECSC
T ss_pred             CCCCEECCCCEECCC
Confidence            999999999887653

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.17  E-value=1.8e-10  Score=95.28  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=12.6

Q ss_pred             EECCCCEECCCcEECCCcEECCCCEECCCcEE
Q 018327          253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  284 (358)
Q Consensus       253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i  284 (358)
                      ++.-+|.||+++.|...+.||+.|.||++|.|
T Consensus       127 ~VNigA~ig~~~midt~a~vgs~aqIG~~vhi  158 (274)
T d3tdta_         127 YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL  158 (274)
T ss_dssp             EECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred             EeccccEEcCCcEEcccceecceeEECCCeEE
Confidence            33333334444444333344444444443333

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.12  E-value=1.7e-11  Score=100.49  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  347 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i  347 (358)
                      +.||++|+||.++.|.+++.||+++.|++++.+.+. +.|+..+
T Consensus       114 v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kd-v~~~~i~  156 (203)
T d1mr7a_         114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD-IAPYMLA  156 (203)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEECSC-BCTTEEE
T ss_pred             eEECCEEEECCceeEEeEEEEcCCCEEecCeEEeee-CCCCEEE
Confidence            679999999999999999999999999999999754 3444433

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.4e-10  Score=91.98  Aligned_cols=48  Identities=17%  Similarity=0.118  Sum_probs=37.1

Q ss_pred             cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCCC
Q 018327          304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIL  352 (358)
Q Consensus       304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~  352 (358)
                      +.|+++|++|.++.|.+++.||+++.|++++.+... +-|++.+....|
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kd-Vp~~si~vg~~~  191 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN-VGENALAISRVP  191 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEECSC-BCTTCEECCCCC
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeee-cCCCCEEEeccc
Confidence            468888899999999999999999999999988664 356665455444

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.05  E-value=9.1e-11  Score=96.24  Aligned_cols=97  Identities=13%  Similarity=0.063  Sum_probs=56.6

Q ss_pred             cccCCcEEecceEECCCCEECCC----------------cEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcE
Q 018327          241 KLATGANIVGNVLVHESAQIGEG----------------CLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHAC  300 (358)
Q Consensus       241 ~~~~~~~i~~~~~i~~~~~i~~~----------------~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~  300 (358)
                      .+...+.+.|++.||+++.++..                +.+.+++.||++|.|+++|+|.    ...+.+++.+.+.+.
T Consensus        10 ~~i~~~I~~pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~   89 (208)
T d1xata_          10 KLLSEQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHF   89 (208)
T ss_dssp             EESTTTCCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGG
T ss_pred             cChHhccCCCCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeeccccc
Confidence            34444555666666666655432                1112356778888888887763    233444444333222


Q ss_pred             E----------------eccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327          301 I----------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  337 (358)
Q Consensus       301 i----------------~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~  337 (358)
                      .                .+++||++|+||.++.|.+++.||++|+||+++.|.
T Consensus        90 ~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt  142 (208)
T d1xata_          90 MHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT  142 (208)
T ss_dssp             CCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ccccccccccccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEe
Confidence            1                125677777777777777777777777777777664

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=7.9e-10  Score=88.44  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEecc-------EEccCCEECCccEE
Q 018327          246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS-------IIGWHSTVGQWARV  318 (358)
Q Consensus       246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~-------~i~~~~~ig~~~~i  318 (358)
                      .++.++.++.    +|.++.|+++++|+++|+|.+++.|   .||++|.|+++|.|...       ....++.++..++|
T Consensus        59 ~~i~~p~~~~----~G~ni~IG~~~~I~~~~~I~d~~~I---~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~I  131 (182)
T d1ocxa_          59 AYIEPTFRCD----YGYNIFLGNNFFANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTI  131 (182)
T ss_dssp             EEECSCEEES----SSTTEEECSSEEECSSEEEECSSCE---EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEE
T ss_pred             eEEECCEEEE----eccceeECCccEECCCcEEecCCeE---EECCCeEECcCceEeecccccceeeeeccceEcceeEE
Confidence            4455555443    4555555555556666666544432   56666666666666552       34566677777888


Q ss_pred             cCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          319 ENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       319 ~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                      +++++||.++.|.+++.|+ ++++++++.|.+|+|+++++
T Consensus       132 g~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kdvp~~~i~  171 (182)
T d1ocxa_         132 GNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVV  171 (182)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEE
T ss_pred             CceEeeCceeeccCcEEECCCCEECCCCEEccCCCCCeEE
Confidence            8888888888888888885 88889999999999999876

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=7.9e-08  Score=85.05  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=119.7

Q ss_pred             EEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHH-----CCCCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKA-----VGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKI   75 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~-----~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i   75 (358)
                      +|+||||.|+||+-   ..||.++|++ |+++++..++.+.+     ...-.++|.++. .+++++++++++ ..+++.+
T Consensus        77 vv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~~fg~~i  152 (378)
T d2icya2          77 VLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-TNSNVDI  152 (378)
T ss_dssp             EEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-TTSSSCE
T ss_pred             EEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-ccCCCce
Confidence            67899999999976   7899999995 89999999998875     233356777776 568899999985 3344444


Q ss_pred             EEecc------------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018327           76 ICSQE------------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK  126 (358)
Q Consensus        76 ~~~~~------------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~  126 (358)
                      .+..|                        ..|-|.++.....     ++.+....-+.+.+...|.+....-..++..|.
T Consensus       153 ~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~  232 (378)
T d2icya2         153 HTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLI  232 (378)
T ss_dssp             EEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHH
T ss_pred             EEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHH
Confidence            43221                        1145776644432     333433344599999999976543467788888


Q ss_pred             hcCCeeEEEe---cCC-CCeeeEEE-cCCCCcEEEEeecCCC--------CCCCeEEEEEEEEChhhhhhcc
Q 018327          127 AHGGEASIMV---DEP-SKYGVVVM-EESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRIE  185 (358)
Q Consensus       127 ~~~~~~~~~~---~~~-~~~~~~~~-d~~~~~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l~  185 (358)
                      +++.++++-+   ..+ ..-|.+.. |.. -++.++.+.|..        ..-.+.+++.++|+-++++.+.
T Consensus       233 ~~~~~~~~kvv~Kt~~dek~G~l~~~dg~-~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~~  303 (378)
T d2icya2         233 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLV  303 (378)
T ss_dssp             HHTCSEEEEEEECCTTCCSSCEEEEETTE-EEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHH
T ss_pred             hcCCcceeEEEecCCCCCceeEEEEECCc-eeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHHH
Confidence            8888887766   222 33444443 332 456677766642        1223589999999999888663

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.76  E-value=4.2e-08  Score=85.86  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccE
Q 018327          244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWAR  317 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~  317 (358)
                      +.+.+.+++.|+.++.|++.+.|.+++.|+++++|+ ++.|. ++.|++++.|++++.+.++.+..++.|..++.
T Consensus        62 ~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~  135 (320)
T d2f9ca1          62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSE  135 (320)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCE
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcE
Confidence            345555555555555555555555555555555554 44554 55555555555555554444444444443333

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=9.7e-08  Score=79.44  Aligned_cols=77  Identities=21%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             CCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCE
Q 018327          244 TGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHST  311 (358)
Q Consensus       244 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~  311 (358)
                      .+..|++.+.|+++..+..  +.+|++++.||++|.|..++.++.         ..||++|.||.|+.|-+ ..||+++.
T Consensus       136 ~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~  215 (241)
T d1ssqa_         136 FDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAK  215 (241)
T ss_dssp             HSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCE
T ss_pred             eeeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCE
Confidence            4455666666666666643  666666677777777777766641         34566666665554443 34444444


Q ss_pred             ECCccEEcC
Q 018327          312 VGQWARVEN  320 (358)
Q Consensus       312 ig~~~~i~~  320 (358)
                      ||.++.+..
T Consensus       216 IgAgsvV~k  224 (241)
T d1ssqa_         216 IGANSVVLN  224 (241)
T ss_dssp             ECTTCEECS
T ss_pred             ECCCCEECC
Confidence            444444443

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.65  E-value=2.8e-07  Score=80.49  Aligned_cols=15  Identities=7%  Similarity=0.031  Sum_probs=6.4

Q ss_pred             EECCCcEECCceEEc
Q 018327          323 ILGEDVHVCDEIYSN  337 (358)
Q Consensus       323 ~i~~~~~i~~~~~i~  337 (358)
                      .+..++.|+.++.+.
T Consensus       162 ~I~~~~~Iggna~i~  176 (320)
T d2f9ca1         162 RIVHQVQLYGNATIT  176 (320)
T ss_dssp             EECSSCEECSSCEEE
T ss_pred             EEeeeeeeCCCcccc
Confidence            333444444444443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=4.7e-08  Score=79.70  Aligned_cols=108  Identities=7%  Similarity=0.018  Sum_probs=64.3

Q ss_pred             cceEECCCCEECCCcEECCCcEECC--CCEE--CCCcEE-eeeEECCCcEECCCcEEec----cEEccCC----------
Q 018327          250 GNVLVHESAQIGEGCLIGPDVAVGP--GCVV--ESGVRL-SRCTVMRGVRIKKHACISS----SIIGWHS----------  310 (358)
Q Consensus       250 ~~~~i~~~~~i~~~~~i~~~~~ig~--~~~i--g~~~~i-~~~~i~~~~~i~~~~~i~~----~~i~~~~----------  310 (358)
                      ..++++||..||+++++......+.  ++..  ..++.+ .+..||++|.|+++|+|..    ..+++.+          
T Consensus        13 ~~~I~~pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~   92 (208)
T d1xata_          13 SEQVSNPNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHE   92 (208)
T ss_dssp             TTTCCCTTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCS
T ss_pred             HhccCCCCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeecccccccc
Confidence            3456677777777666643211110  0110  111111 1355677777777776632    2222222          


Q ss_pred             -----------EECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327          311 -----------TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV  357 (358)
Q Consensus       311 -----------~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~  357 (358)
                                 .+...++|+++|+||.++.|.+++.|+ ++++++++.|.+|+|+++++
T Consensus        93 ~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~  151 (208)
T d1xata_          93 EPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIV  151 (208)
T ss_dssp             CGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEE
T ss_pred             cccccccccCccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEE
Confidence                       223357778888888888888888885 88888999999999998876

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=97.75  E-value=0.00036  Score=63.28  Aligned_cols=176  Identities=22%  Similarity=0.261  Sum_probs=109.3

Q ss_pred             EEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHHC----------C-CCEEEEEecc-ChHHHHHHHHhh
Q 018327            3 ALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAV----------G-VTEVVLAINY-QPEVMLNFLKEF   67 (358)
Q Consensus         3 avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~~----------g-i~~i~vv~~~-~~~~i~~~l~~~   67 (358)
                      +|+||||.|+||+-   ..||.++|+   .++++++..++.+.+.          + .=.++|.++. .++++++++++.
T Consensus       105 vvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~~  181 (501)
T d1jv1a_         105 VLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKH  181 (501)
T ss_dssp             EEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHT
T ss_pred             EEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHhc
Confidence            57799999999976   789999998   4899999988776552          2 2345666666 578899999973


Q ss_pred             hhccCcE---EEEecc---------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccC-
Q 018327           68 EAKLGIK---IICSQE---------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYP-  117 (358)
Q Consensus        68 ~~~~~~~---i~~~~~---------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~-  117 (358)
                       ..+|+.   +.+..|                     ..|.|.++-....     ++.+....-+.+.+...|.+.... 
T Consensus       182 -~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~  260 (501)
T d1jv1a_         182 -KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA  260 (501)
T ss_dssp             -GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred             -cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcccccc
Confidence             222221   222111                     1244665533322     222222233489999999865332 


Q ss_pred             HHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCC------CC----CCCeEEEEEEEEChhhh
Q 018327          118 FAEMIEFHKAHGGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPK------LF----VGNKINAGIYLLNPAVL  181 (358)
Q Consensus       118 l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~------~~----~~~~~~~Giy~~~~~~l  181 (358)
                      -..++..+..++.++.+-+   ..+ +.-|.+...+  |+  +.++.+-|.      ..    .-...++...+|+-+++
T Consensus       261 Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~d--g~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~fl  338 (501)
T d1jv1a_         261 DPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVD--GVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFL  338 (501)
T ss_dssp             CHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEET--TEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHH
T ss_pred             CHHHHHHHHhcccceeEEEEEcCCCCcccceEEEEC--CeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHHH
Confidence            3677888888888877766   223 3556665432  44  444444331      11    12357888999998888


Q ss_pred             hhc
Q 018327          182 DRI  184 (358)
Q Consensus       182 ~~l  184 (358)
                      +.+
T Consensus       339 ~~~  341 (501)
T d1jv1a_         339 RDV  341 (501)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=96.31  E-value=0.014  Score=46.31  Aligned_cols=102  Identities=20%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             CeEEEEec-CC-ccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327            1 MKALILVG-GF-GTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS   78 (358)
Q Consensus         1 m~avIla~-G~-g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~   78 (358)
                      |+|||+.- +. =+||.|.-..  +.-.. .-+-|+.++++.+...+++.+++++.....      ..  ......+.  
T Consensus         1 m~~iiPiK~~~aKTRL~~~L~~--~~r~~-L~~~ml~~tl~~l~~~~~~~v~~vs~~~~~------~~--~~~~~~~~--   67 (208)
T d2i5ea1           1 MRAVIPYKKAGAKSRLSPVLSL--QEREE-FVELMLNQVISSLKGAGIEQVDILSPSVYG------LE--EMTEARVL--   67 (208)
T ss_dssp             CEEEEECCCTTTTGGGTTTSCH--HHHHH-HHHHHHHHHHHHHHHTTCSEEEEEESSCTT------CS--SCCSSEEE--
T ss_pred             CeEEEecCCCCCccCcCcccCH--HHHHH-HHHHHHHHHHHHHHhCCCcEEEEEcCcHHH------HH--HhhcCCcc--
Confidence            89999863 22 2455442110  00000 124599999999999999999888875321      01  11122332  


Q ss_pred             ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHH
Q 018327           79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM  121 (358)
Q Consensus        79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~  121 (358)
                       + ...|..+++.++.+.   .. +.++++.+|+  +...++.++
T Consensus        68 -~-~~~~L~~al~~a~~~---~~-~~vliig~DlP~L~~~~l~~a  106 (208)
T d2i5ea1          68 -L-DEKDLNEALNRYLKE---AE-EPVLIVMADLPLLSPEHIKEI  106 (208)
T ss_dssp             -E-CCSCHHHHHHHHHHH---CC-SCEEEECSCCTTCCHHHHHHH
T ss_pred             -c-CCCCHHHHHHHHHhc---CC-CCEEEecCCcCcCCHHHHHHH
Confidence             1 234666777777654   33 3999999999  444445544

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.022  Score=45.48  Aligned_cols=101  Identities=12%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             cccCCcc-hHHHHHHHHHHCCC-CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327           26 VEFANKP-MILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE  103 (358)
Q Consensus        26 lpi~g~p-li~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~  103 (358)
                      +|.-|+| .|..+|+++.+... +.++||.+...+...+.+.+........+.+..  +..|.+.+.-.+.+..  .+ |
T Consensus         9 i~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~--~~~g~~~a~n~~~~~a--~g-e   83 (265)
T d1omza_           9 MQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKP--QTANKMRNRLQVFPEV--ET-N   83 (265)
T ss_dssp             EEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEE--CSSCCGGGGGSCCTTC--CS-S
T ss_pred             EEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEec--CCCCchhhhhhhHHhC--Cc-C
Confidence            4556776 99999999988864 455555554433333333332222222333322  3347776666666665  33 3


Q ss_pred             cEEEEeCCeeeccC-HHHHHHHHHhcCCe
Q 018327          104 PFFVLNSDVISEYP-FAEMIEFHKAHGGE  131 (358)
Q Consensus       104 ~~lv~~gD~i~~~~-l~~~~~~~~~~~~~  131 (358)
                      .++++.+|.+...+ ++.+++.+.+....
T Consensus        84 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~  112 (265)
T d1omza_          84 AVLMVDDDTLISAQDLVFAFSIWQQFPDQ  112 (265)
T ss_dssp             EEEEECTTEEECHHHHHHHHHHHTTSTTS
T ss_pred             EEEEeCcccCCCHHHHHHHHHHHHhCCCc
Confidence            89999999988776 88888877665443

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.23  E-value=0.72  Score=36.62  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             cccCC-cchHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEecc------CCcCCCchHHHHHHhh
Q 018327           26 VEFAN-KPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE------TEPLGTAGPLALARDK   96 (358)
Q Consensus        26 lpi~g-~pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~------~~~~g~~~sl~~~~~~   96 (358)
                      +|.-| ...|..+|+++.....+  +++|+-+...+...+.++++.+...+.+.....      .+..|.+.++-.+.+.
T Consensus         7 ip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~   86 (255)
T d1qg8a_           7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEM   86 (255)
T ss_dssp             EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccccccccc
Confidence            34434 44899999999887654  455554445678888888876555555433221      2344666677777777


Q ss_pred             ccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327           97 LIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG  130 (358)
Q Consensus        97 i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~  130 (358)
                      .  ..+ .++++.+|.++..+ +..+++.+.....
T Consensus        87 a--~g~-~i~~lD~Dd~~~p~~l~~~~~~~~~~~~  118 (255)
T d1qg8a_          87 A--EGE-YITYATDDNIYMPDRLLKMVRELDTHPE  118 (255)
T ss_dssp             C--CCS-EEEEEETTEEECTTHHHHHHHHHHHCTT
T ss_pred             c--ccc-cccccccccccccchHHHHHHHHHhCCC
Confidence            7  443 88999999987766 8888887766543

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.96  E-value=0.74  Score=38.26  Aligned_cols=105  Identities=11%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             ccccCCcc--hHHHHHHHHHHCCCC----EEEEEeccCh-HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhc
Q 018327           25 LVEFANKP--MILHQIEALKAVGVT----EVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL   97 (358)
Q Consensus        25 llpi~g~p--li~~~l~~l~~~gi~----~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i   97 (358)
                      .+|.-|..  .|..+|+++.+....    +|+||=+... +..++.++++.+.....+.++...+..|.+.+.-.+.+..
T Consensus        27 IIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a  106 (328)
T d1xhba2          27 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVS  106 (328)
T ss_dssp             EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHC
T ss_pred             EEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhh
Confidence            34555743  689999998876432    5555533222 2233334443333334455555556678888888887776


Q ss_pred             cCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCee
Q 018327           98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA  132 (358)
Q Consensus        98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~  132 (358)
                        ..+ .++++.+|.+...+ +..+++.+.+....+
T Consensus       107 --~gd-~i~flD~D~~~~p~~l~~l~~~~~~~~~~~  139 (328)
T d1xhba2         107 --RGQ-VITFLDAHCECTAGWLEPLLARIKHDRRTV  139 (328)
T ss_dssp             --CSS-EEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred             --hcc-eeeecCcccccChhHHHHHHHHHhcCCCeE
Confidence              443 88999999987766 888988887766543