Citrus Sinensis ID: 018335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccccEEEcccccEEEEEEEcccccEEcccccccccEEEEEEEcccccccccccccHHHHHccccccccccccccccccEEEccccEEEccccEEEccccccccccEEEEEEEEccccccccEEEEEEccEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEccEEEEEEcccccEEEEEEccEEEEcccccHHccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEcccccEEEcccccccEEEEEEEEcccccccccccccHHHHHHccEccccccccEEEEEEEEEEEccEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEcccEEEEEccEEEEEEEEEccEEEEHHHccccccc
Coil and Loop (DISEMBL)
maakrflngsdpeeppekrtrtrpsfaSVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQrgvskynpcrsltrssslriqalepsslklifsqklslpiftgskitdvennplqIVVVDtrsngliapaslpqpikIELVvldgdfppgdrdhwtpeefesnivkertgkrplltgdvnvtardgvapigdieftdnsswirSRKFRIGAkvargsyqgVRICEAITDAFVVkdhrgelykkhhppmleDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRlrkilgpgmsEKMWEVTMQHARKCvmgnklyifrghnciILLNPICQVVRAVINNQTYLTRDLTKLNRV
Flexible Loop (DISEMBL)
maakrflngsdpeeppekrtrtrpSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEvqrgvskynpcrsltrssSLRIQALEPSSLKLIFSQKLSLPIFTgskitdvennPLQIVVVDTRSNGLiapaslpqpiKIELVVLDGDFppgdrdhwtpeefesnivkertgkrplltgdvnvtardgvapigdieftdnsswirsRKFRIgakvargsyqgvriCEAITDAFVVKDHRgelykkhhppmledEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNqtyltrdltklnrv
Low Complexity Region (SEG)
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV
Disordered region (IsUnstruct)
**************************ASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRS*******RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPG**DHWT*******IV*****KRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDL******
Disordered Region (DISOPRED)
*****************************IGEAVMVNSFQNF**AL**LLRRVVNEEVQRGVSKYNP*******************LKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT*****
Disordered Region (DISEMBL)
***********************PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV
Disordered Region (DISPRO)
*********************TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNP****************PSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
297734237	469	unnamed protein product [Vitis vinifera]	0.988	0.754	0.672	1e-137
224121274	435	predicted protein [Populus trichocarpa]	0.974	0.802	0.685	1e-135
357521187	474	hypothetical protein MTR_8g104510 [Medic	0.994	0.751	0.656	1e-133
225455998	487	PREDICTED: uncharacterized protein LOC10	0.988	0.726	0.640	1e-133
357521181	487	hypothetical protein MTR_8g104490 [Medic	0.994	0.731	0.653	1e-132
224133108	366	predicted protein [Populus trichocarpa]	0.905	0.885	0.685	1e-128
356513070	480	PREDICTED: uncharacterized protein LOC10	0.991	0.739	0.626	1e-126
356529562	489	PREDICTED: uncharacterized protein LOC10	0.991	0.725	0.618	1e-125
356522779	488	PREDICTED: uncharacterized protein LOC10	0.991	0.727	0.613	1e-125
356524378	486	PREDICTED: uncharacterized protein LOC10	0.997	0.734	0.615	1e-124

>gi|297734237|emb|CBI15484.3| unnamed protein product [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/360 (67%), Positives = 289/360 (80%), Gaps = 6/360 (1%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEV 58
           MAAKR LN  GSDP++P EKRTRTRP F SVIGE +M NSFQN  +ALEP+LRRVVNEEV
Sbjct: 1   MAAKRLLNDFGSDPDQPTEKRTRTRPFFTSVIGEVLMGNSFQNICTALEPMLRRVVNEEV 60

Query: 59  QRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVV 118
           +RG+   + C + TRS SLRIQALE S+L+LIF+++LSLPIFTG+KI   EN+PLQ+ +V
Sbjct: 61  ERGIR--SSC-TFTRSPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIV 117

Query: 119 DTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDV 178
           +T  + ++ P +LP  IK+E+VVLDGDFP GD + W+ +EFE NIV+ERTGKRPLL GDV
Sbjct: 118 ETSGDQMV-PTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDV 176

Query: 179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGE 238
            VT RDG+A IGDIEFTDNSSWIRSRKFR+GA+V  GS   V I EAIT+AF VKDHRGE
Sbjct: 177 IVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGE 236

Query: 239 LYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGM 298
           LYKKHHPPML DEVWRLEKIGKDGAFHKKL++  I TVQD LKLSIV+PQ+LR ILGPGM
Sbjct: 237 LYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGM 296

Query: 299 SEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV 358
           SEKMWEV ++HAR C +G  LYI RG+N  + LN ICQ+V   IN Q Y  ++L+ L+R 
Sbjct: 297 SEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLDRT 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121274|ref|XP_002318542.1| predicted protein [Populus trichocarpa] gi|222859215|gb|EEE96762.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/356 (68%), Positives = 293/356 (82%), Gaps = 7/356 (1%)

Query: 1   MAAKRFLN--GSDPEEP-PEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           MA KRFL   GSD ++P  +KR R RPSFASVIGEAVMVNS +NF  ALEP+LRRVVNEE
Sbjct: 1   MAGKRFLEEPGSDLDQPHDQKRMRRRPSFASVIGEAVMVNSLKNFCLALEPMLRRVVNEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVV 117
           ++  + +      LTRS SLRIQ+LEPSSL+L+FS+ L LPIFTGSKI D++++PLQI++
Sbjct: 61  METNLRRSTSF--LTRSPSLRIQSLEPSSLQLMFSKNLLLPIFTGSKIVDLDSSPLQILL 118

Query: 118 VDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGD 177
           VDTR + +++   LP PIKIE+VVLDGDFP  D   WT EEF SNIVKER GKRPLL GD
Sbjct: 119 VDTRGDQVVS-TYLPHPIKIEVVVLDGDFPSYDNRTWTSEEFNSNIVKERKGKRPLLAGD 177

Query: 178 -VNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHR 236
            ++VT RDG APIG+IEFTDNSSW+RSRKFR+GA+V   SYQGVRI EAIT+AFVVKDHR
Sbjct: 178 CLSVTLRDGFAPIGEIEFTDNSSWVRSRKFRLGARVVPESYQGVRIREAITEAFVVKDHR 237

Query: 237 GELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296
           GELYKKHHPPML+DEVWRLEKIGKDGAFHKKL+ A I TVQDFLKLS+V+P+RLR+ILG 
Sbjct: 238 GELYKKHHPPMLQDEVWRLEKIGKDGAFHKKLATARIHTVQDFLKLSVVDPRRLREILGH 297

Query: 297 GMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDL 352
           GMSEKMWEVT++HAR C +GNK ++FR  NC I  +PICQ+V AVI+  +Y +++L
Sbjct: 298 GMSEKMWEVTIKHARTCDLGNKHFVFRRPNCTITFDPICQIVHAVIDGSSYSSKEL 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521187|ref|XP_003630882.1| hypothetical protein MTR_8g104510 [Medicago truncatula] gi|355524904|gb|AET05358.1| hypothetical protein MTR_8g104510 [Medicago truncatula]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/364 (65%), Positives = 292/364 (80%), Gaps = 8/364 (2%)

Query: 1   MAAKRFLNGS--DPEEPPEKRTRTR--PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNE 56
           MAAKRF + S  D ++P +KR RT   PSFASVIGE VMV + QN FS LEPLLRRVVNE
Sbjct: 1   MAAKRFFDDSNQDKDKPNDKRIRTTTIPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNE 60

Query: 57  EVQRGVSK-YNPCRSLTRSSSLRIQALE-PSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           EV+R + + Y P RS+T+S SLR++ +E P SL+ +F  KLSLPIFTGSKI D++ N + 
Sbjct: 61  EVERAMRQCYPPVRSITKSPSLRLEGMEEPLSLQFMFKNKLSLPIFTGSKILDMDGNSIS 120

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           +++VD RSN  + P SL  PIKIE+VVLDGDFPP  ++  WT EEF ++IVKERTGKRPL
Sbjct: 121 VILVD-RSNDQVVPTSLSHPIKIEIVVLDGDFPPSKKESSWTSEEFNNSIVKERTGKRPL 179

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVK 233
           LTG++N+T RDG+APIGDIEFTDNSSWIRSRKFR+  ++A G+ Q VRI E +T+AFVVK
Sbjct: 180 LTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEAFVVK 239

Query: 234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
           DHRGELYKKHHPP L+DEVWRLEKIGKDGAFHKKL+  GI TVQ+FLKLS+V+P RLRKI
Sbjct: 240 DHRGELYKKHHPPSLKDEVWRLEKIGKDGAFHKKLTLEGITTVQEFLKLSVVDPLRLRKI 299

Query: 294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT 353
           LG GMSEKMW+VT++HA+ CVMGNKLY++RG    I LN ICQ+VRA IN QT   RD+ 
Sbjct: 300 LGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDIC 359

Query: 354 KLNR 357
            +++
Sbjct: 360 NMDK 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455998|ref|XP_002276900.1| PREDICTED: uncharacterized protein LOC100259493 [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/378 (64%), Positives = 289/378 (76%), Gaps = 24/378 (6%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTRPSFAS------------------VIGEAVMVNSFQ 40
           MAAKR LN  GSDP++P EKRTRTRP F S                  VIGE +M NSFQ
Sbjct: 1   MAAKRLLNDFGSDPDQPTEKRTRTRPFFTSNVYLNKISYLAMVLSHDSVIGEVLMGNSFQ 60

Query: 41  NFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIF 100
           N  +ALEP+LRRVVNEEV+RG+   + C + TRS SLRIQALE S+L+LIF+++LSLPIF
Sbjct: 61  NICTALEPMLRRVVNEEVERGIR--SSC-TFTRSPSLRIQALEASNLQLIFTKRLSLPIF 117

Query: 101 TGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFE 160
           TG+KI   EN+PLQ+ +V+T  + ++ P +LP  IK+E+VVLDGDFP GD + W+ +EFE
Sbjct: 118 TGTKIGYAENSPLQLHIVETSGDQMV-PTTLPYSIKVEIVVLDGDFPQGDCNTWSSKEFE 176

Query: 161 SNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGV 220
            NIV+ERTGKRPLL GDV VT RDG+A IGDIEFTDNSSWIRSRKFR+GA+V  GS   V
Sbjct: 177 DNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIEFTDNSSWIRSRKFRLGARVVPGSRHDV 236

Query: 221 RICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFL 280
            I EAIT+AF VKDHRGELYKKHHPPML DEVWRLEKIGKDGAFHKKL++  I TVQD L
Sbjct: 237 SIREAITEAFAVKDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLASENINTVQDLL 296

Query: 281 KLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRA 340
           KLSIV+PQ+LR ILGPGMSEKMWEV ++HAR C +G  LYI RG+N  + LN ICQ+V  
Sbjct: 297 KLSIVDPQKLRTILGPGMSEKMWEVVIKHARNCDLGKNLYILRGYNFTVTLNAICQIVMM 356

Query: 341 VINNQTYLTRDLTKLNRV 358
            IN Q Y  ++L+ L+R 
Sbjct: 357 DINGQIYARQELSNLDRT 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521181|ref|XP_003630879.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524901|gb|AET05355.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 238/364 (65%), Positives = 290/364 (79%), Gaps = 8/364 (2%)

Query: 1   MAAKRFLN--GSDPEEPPEKRTRTR--PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNE 56
           MAAKRFL+    D  +P +KR RT    SFASVIGE VMV + QN FS LEPLLRRVVNE
Sbjct: 1   MAAKRFLDDFNEDKVKPNDKRMRTTTTSSFASVIGEIVMVKNMQNLFSGLEPLLRRVVNE 60

Query: 57  EVQRGVSK-YNPCRSLTRSSSLRIQALE-PSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           EV+R + + Y P RS+T S SLR++A+E P S + +F +KLSLPIFTGS+I D++ N + 
Sbjct: 61  EVERAMRQCYPPVRSITNSPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGNSIN 120

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           +++VD +SN  I P SLP PIKIE+VVLDGDFPP +++  WT EEF SNIVKER GKRPL
Sbjct: 121 VILVD-KSNDQIVPTSLPHPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGKRPL 179

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVK 233
           LTG++N+T RDG+APIGDIEFTDNSSWIRSRKFR+  ++A G+ Q VRI E +T+ FVVK
Sbjct: 180 LTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVK 239

Query: 234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
           DHRGELYKKHHPP L DEVWRLEKIGKDGAFHKKL++ GI TVQ+FLKLS+V+P RLRKI
Sbjct: 240 DHRGELYKKHHPPSLNDEVWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRLRKI 299

Query: 294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRDLT 353
           LG GMSEKMW+VT++HA+ CVMGNKLY++RG    I LN ICQ+VRA IN QT   RD+ 
Sbjct: 300 LGIGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDIC 359

Query: 354 KLNR 357
            +++
Sbjct: 360 NMDK 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133108|ref|XP_002321484.1| predicted protein [Populus trichocarpa] gi|222868480|gb|EEF05611.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/328 (68%), Positives = 275/328 (83%), Gaps = 4/328 (1%)

Query: 29  VIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRSLTRSSSLRIQALEPSSLK 88
           VIGEAV +NS +N   +LEP++RRVVNEEV+ G  + + C SLTRSSSL+I+ALE SSL+
Sbjct: 4   VIGEAVTMNSLKNLCFSLEPMIRRVVNEEVE-GSLRRSTC-SLTRSSSLQIKALEASSLQ 61

Query: 89  LIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPP 148
           L++S+ L LPIFTGSKI D++++PLQI++VDTR + ++ P  LP P+KIE+VVLDGDFP 
Sbjct: 62  LMYSKSLLLPIFTGSKIVDLDSSPLQILLVDTRGDQMV-PTYLPHPLKIEVVVLDGDFPS 120

Query: 149 GDRDHWTPEEFESNIVKERTGKRPLLTGD-VNVTARDGVAPIGDIEFTDNSSWIRSRKFR 207
                WT EEF+SNIVKERTGKRPLL GD + VT RDG APIG+IEFTDNSSWIRSRKFR
Sbjct: 121 NGSSKWTSEEFDSNIVKERTGKRPLLAGDCLTVTLRDGFAPIGEIEFTDNSSWIRSRKFR 180

Query: 208 IGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKK 267
           +GA+VA GSYQGV+I EAIT+AFVVKDHRGELYKKHHPPML+DEVWRLEKIGKDGAFH+K
Sbjct: 181 LGARVAPGSYQGVKIREAITEAFVVKDHRGELYKKHHPPMLQDEVWRLEKIGKDGAFHRK 240

Query: 268 LSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNC 327
           L+A GI TVQDFLKLS+V+ Q+LR+ILGPGMSEKMWEVT++HAR C +GN  +IFR  NC
Sbjct: 241 LTAEGINTVQDFLKLSVVDRQKLRRILGPGMSEKMWEVTIKHARTCDLGNNHFIFRRPNC 300

Query: 328 IILLNPICQVVRAVINNQTYLTRDLTKL 355
            I LNPICQ+V A+I+  +Y  ++L  +
Sbjct: 301 TITLNPICQIVHAMIDGNSYSNKELASI 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513070|ref|XP_003525237.1| PREDICTED: uncharacterized protein LOC100802257 [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/369 (62%), Positives = 290/369 (78%), Gaps = 14/369 (3%)

Query: 1   MAAKRFLNGSDPEE---PPEKRTRT--RPSFASVIGEAVMVNSFQNFFSALEPLLRRVVN 55
           MAAKRF + SD +    P +KR RT  RPSFASVIGE VMV + QN FS LEPLLRRVVN
Sbjct: 1   MAAKRFFDDSDQDNNKPPGDKRMRTTPRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVN 60

Query: 56  EEVQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNP 112
           EEV+R +      R+++RS SLRI+A    +PS+ +L+FS+KL +PIFTGS+I D++ NP
Sbjct: 61  EEVERVMRHCTVPRTISRSPSLRIEAASLEKPSNYELMFSKKLLVPIFTGSRIVDIDGNP 120

Query: 113 LQIVVVDTRSNG---LIA-PASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERT 168
           +Q+++VD +S G   L+A P S+PQPIK+E+VVLDGDFP  +++ WT EEF +NIVKERT
Sbjct: 121 IQVILVD-KSGGDGELVAVPTSVPQPIKLEIVVLDGDFP-NNKESWTTEEFNNNIVKERT 178

Query: 169 GKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITD 228
           GKRPLLTG++N+T RDG+API +IEFTDNSSWIRSRKFR+  +VA GS   + I + +T+
Sbjct: 179 GKRPLLTGELNLTMRDGIAPIEEIEFTDNSSWIRSRKFRVAVRVAPGSNHTLPIRQGMTE 238

Query: 229 AFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQ 288
            FVVKDHRGELYKKH+PP L DEVWRLEKIGKDGAFHKKLS  GI +VQDFLKLS+V+  
Sbjct: 239 PFVVKDHRGELYKKHYPPKLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDVH 298

Query: 289 RLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYL 348
           RLRKILG GMSEKMWEVTM+HA+ C  GNK Y++RG N  + LN ICQ+VRA IN Q++ 
Sbjct: 299 RLRKILGVGMSEKMWEVTMKHAKTCEKGNKYYVYRGPNFSVFLNSICQLVRADINGQSFP 358

Query: 349 TRDLTKLNR 357
           +R+ + + R
Sbjct: 359 SRERSNMTR 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529562|ref|XP_003533359.1| PREDICTED: uncharacterized protein LOC100803213 [Glycine max]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/367 (61%), Positives = 286/367 (77%), Gaps = 12/367 (3%)

Query: 1   MAAKRFLNGSD--PEEPPEKRTR-TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           M+AKRF N SD  PE P  KR R TRPSFASVIGE VMV + +N FSA+EPLL+RVV EE
Sbjct: 1   MSAKRFFNDSDQDPENPGGKRMRNTRPSFASVIGEVVMVKNLENLFSAMEPLLKRVVGEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           V + + +++  RS  RS SLR+QA+   +PS+L+L FS++LSLPIFTGS+I DV+ NP+ 
Sbjct: 61  VDQAMRQWS--RSFARSPSLRLQAMDQQQPSTLQLCFSKRLSLPIFTGSRILDVDGNPIN 118

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           IV++D +SNG   P SL   IK+E+VV+DGDFP  D D  WT EEF  +IVKER GKRPL
Sbjct: 119 IVLMD-KSNGQGVPTSLSNAIKLEIVVVDGDFPLNDNDEDWTSEEFNRHIVKERNGKRPL 177

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSY-QGVRICEAITDAFVV 232
           L G++NV  RDG+AP GDIEFTDNSSWIR RKFR+  +V  G+   GVRI EA+T+AFVV
Sbjct: 178 LAGELNVIMRDGIAPTGDIEFTDNSSWIRCRKFRVAVRVVPGTNPGGVRIREAMTEAFVV 237

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRK 292
           KDHRGELYKKHHPPML DEVWRLEKIGKDGAFH+KLS+ GIKTVQDFLKL++++  +LR 
Sbjct: 238 KDHRGELYKKHHPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDALKLRN 297

Query: 293 ILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRD- 351
           ILG GMS+KMWEVT++HA  C +G+K+YI+RG    I L+P+C+++RA +N  T+  RD 
Sbjct: 298 ILGMGMSDKMWEVTIKHAMTCDIGSKMYIYRGPEFTIFLDPVCKLIRADVNGHTFSNRDP 357

Query: 352 LTKLNRV 358
           ++ LN+ 
Sbjct: 358 MSHLNKA 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522779|ref|XP_003530023.1| PREDICTED: uncharacterized protein LOC100792405 [Glycine max]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/367 (61%), Positives = 287/367 (78%), Gaps = 12/367 (3%)

Query: 1   MAAKRFLNGSD--PEEPPEKRTR-TRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEE 57
           MAAKRF N SD  P+ P +KR R TRPSFASVIGE VM+ + +N FSA+EPLLRRV+ EE
Sbjct: 1   MAAKRFFNDSDQDPDNPGDKRMRNTRPSFASVIGEVVMIKNMENLFSAMEPLLRRVIGEE 60

Query: 58  VQRGVSKYNPCRSLTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQ 114
           V R + ++    S  RS SLR+QAL   +PS+L+L FS++LSLPIFTGS+I +V+  P+ 
Sbjct: 61  VDRVMRQW--PHSFARSPSLRLQALDQQQPSTLQLWFSKRLSLPIFTGSRILEVDGKPIN 118

Query: 115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDH-WTPEEFESNIVKERTGKRPL 173
           IV++D +S+G + P SLP  IK+E+VVLDGDFPP D D  WT EEF  ++VKER GKRPL
Sbjct: 119 IVLMD-KSSGKVVPTSLPHAIKLEIVVLDGDFPPDDNDEDWTSEEFNRHVVKERIGKRPL 177

Query: 174 LTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQG-VRICEAITDAFVV 232
           L G++NV  RDG+APIGDIEFTDNS WIR RKFR+  +VA G+ QG VRI EAI++AF V
Sbjct: 178 LAGELNVIMRDGIAPIGDIEFTDNSCWIRCRKFRVAVRVAPGTNQGGVRIREAISEAFAV 237

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRK 292
           KDHRGELYKKH+PPML DEVWRLEKIGKDGAFH+KLS+ GIKTVQDFLKL++++  +LR 
Sbjct: 238 KDHRGELYKKHYPPMLHDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDTLKLRN 297

Query: 293 ILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRD- 351
           ILG GMS+KMWEVT++HA  C  G+K++I+RG +  I L+P+C+++RA  N  T+  RD 
Sbjct: 298 ILGIGMSDKMWEVTIKHAMTCDTGSKMHIYRGPDYTIFLDPVCKLIRADFNGHTFSNRDA 357

Query: 352 LTKLNRV 358
           ++ LN+ 
Sbjct: 358 MSPLNKA 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524378|ref|XP_003530806.1| PREDICTED: uncharacterized protein LOC100788183 [Glycine max]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/372 (61%), Positives = 283/372 (76%), Gaps = 15/372 (4%)

Query: 1   MAAKRFLNGSDPEE----PPEKRTRT--RPSFASVIGEAVMVNSFQNFFSALEPLLRRVV 54
           MAAKRF + SD +     P +KR RT  RPSFASVIGE VMV + QN FS LEPLLRRVV
Sbjct: 1   MAAKRFFDDSDQDNNNKPPGDKRMRTTPRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVV 60

Query: 55  NEEVQRGVSKYNPCRS-LTRSSSLRIQAL---EPSSLKLIFSQKLSLPIFTGSKITDVEN 110
           NEE++R +  ++  RS L+RS SLRI+A    + S  +L+FS+KLS+PIFTGS+I D++ 
Sbjct: 61  NEEMERVMRHFSVPRSILSRSPSLRIEAASMEQESKYELVFSKKLSVPIFTGSRIVDIDG 120

Query: 111 NPLQIVVVDTRSNGLIA-PASLPQPIKIELVVLDGDFPPGDRDH----WTPEEFESNIVK 165
           N + +++VD     ++A P SL  PIK+E+VVLDGDFP  + +     WT EEF ++IVK
Sbjct: 121 NSIHVILVDKSGGEVVAVPTSLGHPIKLEIVVLDGDFPAPNNNKEEYSWTSEEFNNHIVK 180

Query: 166 ERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEA 225
           ERTGKRPLLTG++N+T RDG+A I +IEFTDNSSWIRSRKFR+  +VA GS Q VRI E 
Sbjct: 181 ERTGKRPLLTGELNLTMRDGIALIEEIEFTDNSSWIRSRKFRVAVRVAPGSNQTVRIREG 240

Query: 226 ITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIV 285
           IT+ FVVKDHRGELYKKHHPPML DEVWRLEKIGKDGAFHKKLS  GI +VQDFLKL  V
Sbjct: 241 ITEPFVVKDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLYFV 300

Query: 286 EPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQ 345
           +  RL+KILG GMS+KMW+VT++HA+ C  GNK Y +RGHN  + LN ICQ+VRA IN Q
Sbjct: 301 DFHRLKKILGVGMSDKMWDVTIKHAKTCEKGNKYYAYRGHNFTVFLNSICQLVRADINGQ 360

Query: 346 TYLTRDLTKLNR 357
           T+  R+L+ + R
Sbjct: 361 TFPGRELSNMTR 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.955	0.758	0.603	1.9e-106
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.974	0.539	0.495	1.6e-88
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.966	0.556	0.488	3.7e-87
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.969	0.577	0.490	4.4e-84
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.955	0.570	0.46	2.3e-78
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.944	0.601	0.459	4.8e-78
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.902	0.573	0.397	4.2e-56

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 216/358 (60%), Positives = 273/358 (76%)

Query:     1 MAAKRFLNG--SDPEEPPEKRTRT-RPSFASVIGEAVMVNSFQNFF-SALEPLLRRVVNE 56
             MA KR      SD E   EKR ++  PS AS I         +N   S LEP++R+VV +
Sbjct:     1 MAGKRLFQDLDSDQENKSEKRIKSVLPSLASPISSVFGALISENTLRSVLEPVIRKVVRQ 60

Query:    57 EVQRGVSKYNPCRSLTRSSSLRIQALEPSS--LKLIFSQKLSLPIFTGSKITDVENNPLQ 114
             EV+ G+SK      L+RSSS RI+A E ++  LKLIF + L  PIFTGSKI+DV+NNPL+
Sbjct:    61 EVEYGISKRF---RLSRSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDVDNNPLE 117

Query:   115 IVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLL 174
             I++VD  SN    P +L +PIK+++V L GDFP GD+  WT +EFESNI+KER GKRPLL
Sbjct:   118 IILVDD-SN---KPVNLNRPIKLDIVALHGDFPSGDK--WTSDEFESNIIKERDGKRPLL 171

Query:   175 TGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSY-QGVRICEAITDAFVVK 233
              G+V+VT R+GVA IG+I FTDNSSWIRSRKFRIGAKVA+GS  QGV +CEA+T+A VV+
Sbjct:   172 AGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAIVVR 231

Query:   234 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKI 293
             DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLS+  I TVQDFLKLS+V+   LR+I
Sbjct:   232 DHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDELRQI 291

Query:   294 LGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPICQVVRAVINNQTYLTRD 351
             LGPGMS++ WEVT++HAR+C++GNKLYI RG N  ++LNPIC+V++A+I+     +++
Sbjct:   292 LGPGMSDRKWEVTLKHARECILGNKLYISRGPNFFMILNPICEVMKALIDGHVLSSQE 349

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 180/363 (49%), Positives = 249/363 (68%)

Query:     3 AKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGV 62
             AKR L+G+D ++P  KR    P+FASVI EA+ V+S Q   S+LEP+LRRVV+EE++R +
Sbjct:    12 AKRNLDGNDDDQPERKR----PAFASVIVEALKVDSLQKLCSSLEPILRRVVSEELERAL 67

Query:    63 SKYNPCRSLTRSSSL---RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVD 119
             +K  P R LT SS     RI+  +   L+L F  +LSLP+FTG K+   +   + +V++D
Sbjct:    68 AKLGPAR-LTGSSGSSPKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGAVIHVVLID 126

Query:   120 TRSNGLIAPASLPQP-IKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDV 178
               +   +     P+   K+ +VVL+GDF   D + WT EEFES++VKER+GKRPLLTG+V
Sbjct:   127 ANTGRAVVYG--PEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRPLLTGEV 184

Query:   179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGE 238
              VT ++GV  +G++ FTDNSSWIRSRKFR+G +V  G   G+RI EA T+AFVVKDHRGE
Sbjct:   185 YVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVVKDHRGE 244

Query:   239 LYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGM 298
             LYKKH+PP L D+VWRL+KIGKDGAFHKKL+A GI TV+DFL++ + +  +LR ILG GM
Sbjct:   245 LYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRTILGSGM 304

Query:   299 SEKMWEVTMQHARKCVMGNKLYIFRGH---NCIILLNPICQVVRAVINNQTYLTRDLTKL 355
             S KMW+  ++HA+ CV  +KLYI+      N  ++ N I ++   +  +Q +    LT  
Sbjct:   305 SNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIYELSGLISGDQYFSADSLTDS 364

Query:   356 NRV 358
              +V
Sbjct:   365 QKV 367

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 170/348 (48%), Positives = 238/348 (68%)

Query:     1 MAAKRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQR 60
             M  KR L   D ++  ++  R RP+ ASVI EA+ ++S Q   S+LEP+LRRVV+EEV+R
Sbjct:    12 MREKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPILRRVVSEEVER 71

Query:    61 GVSKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDT 120
              ++K  P R   RSS  RI+ +   +L+L F  +LS+P+FTG KI   +   + +V++D 
Sbjct:    72 ALAKLGPARLSERSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGEQGAAIHVVLLDM 131

Query:   121 RSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNV 180
              + G +         K+++VVLDGDF   D D W+ EEFE ++VKER GKRPLLTGDV V
Sbjct:   132 -TTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQGKRPLLTGDVQV 190

Query:   181 TARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELY 240
             T ++GV  +G++ FTDNSSWIR RKFR+G +V+ G  +G+R+ EA T+AF VKDHRGELY
Sbjct:   191 TLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEAFTVKDHRGELY 250

Query:   241 KKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSE 300
             KKH+PP L+DEVWRLEKIGKDGAFHKKL+ AGI  V++FL+L + + Q+LR ILG GMS 
Sbjct:   251 KKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQKLRTILGSGMSN 310

Query:   301 KMWEVTMQHARKCVMGNKLYIFRGHNCI-ILLNPICQVVRAVINNQTY 347
             +MWE   +H++ CV+   LY++   + + ++ N I +    +   Q Y
Sbjct:   311 RMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEFSGLISGKQYY 358

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 178/363 (49%), Positives = 247/363 (68%)

Query:     4 KRFLNGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVS 63
             KR    +D ++P  KR    P+ ASVI EA+ V+S Q   S+LEP+LRRVV+EEV+R ++
Sbjct:     2 KRNFERNDDDKPERKR----PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALA 57

Query:    64 KYNPCRSLTRS--SSLRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTR 121
             K  P R  T S  S  RI   +  +L+L F  +LSLP+FTG ++   +   + +V++D  
Sbjct:    58 KLVPTRLTTSSVFSPKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLIDAN 117

Query:   122 SNGLIAPASL-PQP-IKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVN 179
             +     P ++ P+  +K+E+VVL GDF   D + WT EEFES++VKER GKRPLLTGD+ 
Sbjct:   118 TG---RPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLF 174

Query:   180 VTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGEL 239
             V  ++GV  +G+I FTDNSSWIRSRKFR+G +V  G   G+RI EA T+AF VKDHRGEL
Sbjct:   175 VVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGEL 234

Query:   240 YKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMS 299
             YKKH+PP L DEVWRLEKIGKDGAFHK+L+AAGI TV+ FL+  + +  +LR ILG GMS
Sbjct:   235 YKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMS 294

Query:   300 EKMWEVTMQHARKCVMGNKLYIFR---GHNCIILLNPICQVVRAVINNQTYLTRD-LTKL 355
              KMW++ ++HA+ CV+  KLYI+      +  ++ N I ++   +  +Q YL+ D L++ 
Sbjct:   295 NKMWDLLVEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIYELSGLITEDQ-YLSADSLSES 353

Query:   356 NRV 358
              +V
Sbjct:   354 QKV 356

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 161/350 (46%), Positives = 225/350 (64%)

Query:    11 DPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNPCRS 70
             D ++ PE + +  P+ ASVI EAV V+S Q   S+LEPL RR+V+EEV+R +S+    + 
Sbjct:    12 DTDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERALSRLGNAKL 71

Query:    71 LTRSSS-LRIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPA 129
              +RS    RIQ     +L+L F  ++   +FTG K+     + + +V++D  +  ++   
Sbjct:    72 TSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDANTGNVVQTG 131

Query:   130 SLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPI 189
                   K+ +VVL+GDF   D + WT E FES  VKER GKRP+LTGD  +  ++GV  +
Sbjct:   132 E-ESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVLKEGVGTL 190

Query:   190 GDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLE 249
             G++ FTDNSSWIRSRKFR+G K A G      I EA T+ F VKDHRGELYKKH+PP + 
Sbjct:   191 GELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELYKKHYPPAVH 250

Query:   250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQH 309
             DEVWRL++I KDG  HKKL  A I TV+DFL+L + +PQ+LR +LG GMS +MWE T++H
Sbjct:   251 DEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRMWENTVEH 310

Query:   310 ARKCVMGNKLYIF---RGHNCIILLNPICQVVRAVINNQTYLTRDLTKLN 356
             A+ CV+G KLY+F   + H   ++ N I +  R +I N  +L+  L  LN
Sbjct:   311 AKTCVLGGKLYVFYTDQTHATGVVFNHIYEF-RGLITNGQFLS--LESLN 357

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 160/348 (45%), Positives = 228/348 (65%)

Query:     8 NGSDPEEPPEKRTRTRPSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKYNP 67
             N    +  PE + +  P+ ASVI EAV V+S Q   S+LEPL RR+V+EEV+R +S+   
Sbjct:    13 NQEHADNLPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERAISRLEN 72

Query:    68 CRSLTRSSSL-RIQALEPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLI 126
              +S +RS+   +IQ L+  +L+L F  ++   +FTG K+   + + + +V++D  +  +I
Sbjct:    73 SKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSAIHVVLIDANTGNVI 132

Query:   127 APASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGV 186
                      K+ +VVLDGDF   D   WT E FES  VKER GKRP+LTGD +V  ++GV
Sbjct:   133 QTGE-ESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPILTGDRHVIIKEGV 191

Query:   187 APIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPP 246
               +G + FTDNSSWIRSRKFR+G K A G +    I EA T+ F VKDHRGELYKKH+PP
Sbjct:   192 GTLGKLTFTDNSSWIRSRKFRLGVKPATGFH----IREAKTEPFAVKDHRGELYKKHYPP 247

Query:   247 MLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVT 306
             +L DEVWRL+KI KDGA HKKL  + I TV+DFL++ + +PQ+LR +LG GMS +MW+ T
Sbjct:   248 VLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSLLGSGMSNRMWDNT 307

Query:   307 MQHARKCVMGNKLYIF---RGHNCIILLNPICQVVRAVINNQTYLTRD 351
             ++HA+ CV+G KLY +   + H   ++ N I +  + +I N  +L+ +
Sbjct:   308 VEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEF-QGLIANGHFLSSE 354

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 135/340 (39%), Positives = 190/340 (55%)

Query:    25 SFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSKY--NPCRSLTRSSSLRIQAL 82
             +F  V+ + +   S   F   +E ++RR+V EE+QR +  +  + C S+ RS S    + 
Sbjct:    24 TFKKVVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERSRSETPSSR 83

Query:    83 EPSSLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVL 142
               S LKL F       IFTGSKI   + +PL I +VD  +N L++        ++ELV L
Sbjct:    84 --SRLKLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSS-RVELVPL 140

Query:   143 DGDFPPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPI-GDIEFTDNSSWI 201
             + DF     + WT E F  NI+ +R GKRPLLTGD+ V  ++GV  I GDI F+DNSSW 
Sbjct:   141 NADFT---EESWTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWT 197

Query:   202 RSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKD 261
             RSRKFR+GAK+      G    EA ++AF  +D RGE YKKHHPP   DEVWRLEKI KD
Sbjct:   198 RSRKFRLGAKLT-----GDGAVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKD 252

Query:   262 GAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGN-KLY 320
             G    +L+   I TV+DF +L  V    L  I+G G+S+K W   + HA  CV+   + Y
Sbjct:   253 GVSATRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECY 312

Query:   321 IFRGHN--CIILLNPICQVVRAVINNQTYLTRDLTKLNRV 358
             I+  +     +L N + +++R   N       D   L+++
Sbjct:   313 IYNANTPGVTLLFNSVYELIRVSFNGNDIQNLDQPILDQL 352


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      358       358   0.00081  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  236 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.38u 0.08s 29.46t   Elapsed:  00:00:02
  Total cpu time:  29.38u 0.08s 29.46t   Elapsed:  00:00:02
  Start:  Sat May 11 08:23:22 2013   End:  Sat May 11 08:23:24 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-143

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  408 bits (1051), Expect = e-143
 Identities = 159/275 (57%), Positives = 200/275 (72%), Gaps = 6/275 (2%)

Query: 87  LKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDF 146
           LKL+F  KLSLPIFTGSKI   +  P++I +VD  +     P S     K+E+VVL GDF
Sbjct: 2   LKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTGVTSGPLS---SAKLEVVVLHGDF 58

Query: 147 PPGDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKF 206
              D ++WT EEF  NIVKER GKRPLLTGDV VT ++GVA IG+I FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 207 RIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHK 266
           R+GA+V  GSY GVR+ EA+T++FVVKDHRGELYKKHHPP LEDEVWRLEKIGKDGAFHK
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 267 KLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFR--- 323
           +L+A+GI TV+DFL+L   +P +LR+ILG GMS KMWE T+ HA+ CV+G+K YI+R   
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 324 GHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV 358
             N  +  N + ++V    +       +L++L + 
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQA 273

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	90.13
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	88.28
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	88.16
PRK04301	317	radA DNA repair and recombination protein RadA; Va	85.35
PF14520	60	HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU	83.91
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	83.62
PRK03609	422	umuC DNA polymerase V subunit UmuC; Reviewed	80.77

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=1.3e-116  Score=847.78  Aligned_cols=270  Identities=58%  Similarity=0.976  Sum_probs=265.8

Q ss_pred             ceEEEEccCCCCCcccCCceeecCCCCeEEEEEEcCCCCeeecCCCCCcceEEEEEecCCCCCCCCCCCCHHHHhhcccc
Q 018335           86 SLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVK  165 (358)
Q Consensus        86 ~~~L~F~n~l~~pifT~~kI~a~~g~~i~V~l~D~~t~n~iv~~g~~ss~kveIvVLdGDF~~~~~e~WT~eEF~~~IV~  165 (358)
                      +|||+|+|+|++|+|||++|+|+||+||+|+|+|++|+   |++||+||+|||||||||||+++++++||+|||++|||+
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~---v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~   77 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG---VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVK   77 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC---ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEee
Confidence            58999999999999999999999999999999998876   999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccEEEEecCceeecCCeEEecCCccccCCceEEEEEeecCCCCceeeeeeeecceEEeecCCcccccCCC
Q 018335          166 ERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHP  245 (358)
Q Consensus       166 ~R~Gk~pLL~Gdl~v~L~~Gva~l~di~FtDnSs~~rSrKFRLgarv~~~~~~g~RI~EAvse~FvVkd~Rge~~kKh~p  245 (358)
                      +|+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+||||||
T Consensus        78 ~r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p  157 (299)
T PF07887_consen   78 EREGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYP  157 (299)
T ss_pred             cCCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCCCceEEEe--
Q 018335          246 PMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFR--  323 (358)
Q Consensus       246 P~L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~~k~y~y~--  323 (358)
                      |+|+|||||||+|||+|+|||+|+++||+||+|||+++++||++||+|||+|||++||++||+|||||++++++|+|+  
T Consensus       158 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~~~  237 (299)
T PF07887_consen  158 PSLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYYDE  237 (299)
T ss_pred             CCCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             cCcEEEEEccceeEeeeEECCeEeecccCccccCC
Q 018335          324 GHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV  358 (358)
Q Consensus       324 ~~~~~l~FN~i~~lvga~~~g~~~~~~~l~~~~k~  358 (358)
                      ++|++|+|||||+||||+|+|||++.++|++.||+
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~  272 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKA  272 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHH
Confidence            67999999999999999999999999999999984

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=90.13  E-value=0.36  Score=47.66  Aligned_cols=48  Identities=31%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             hhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335          264 FHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (358)
Q Consensus       264 ~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~  316 (358)
                      .-++|+++||.||+||+..   +|..|.+++  ++|...++.+..||.+|...
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~   60 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPM   60 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            3489999999999999875   899999998  79999999999999988653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=88.28  E-value=0.6  Score=46.19  Aligned_cols=49  Identities=35%  Similarity=0.311  Sum_probs=43.0

Q ss_pred             hhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335          263 AFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (358)
Q Consensus       263 ~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~  316 (358)
                      ..-++|+++||.||+||+..   ++..|.++.  |+|...++.+++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            34589999999999998765   799999998  79999999999999988654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=88.16  E-value=0.61  Score=46.88  Aligned_cols=60  Identities=32%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335          252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG  316 (358)
Q Consensus       252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~  316 (358)
                      +-.|..-|-.-.--++|+++||.||+||+..   ++..|.+++  ++|....+.+.+||.+|...
T Consensus        28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~   87 (342)
T PLN03186         28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPL   87 (342)
T ss_pred             HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhccc
Confidence            4444442333334499999999999999875   788999998  79999999999999888654

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=85.35  E-value=0.65  Score=45.27  Aligned_cols=56  Identities=25%  Similarity=0.356  Sum_probs=44.8

Q ss_pred             eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335          252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV  314 (358)
Q Consensus       252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv  314 (358)
                      +-.|.+||+.  .-++|.++||+|++|++.   .+++.|.+++  |++.+.++.+.+-|+.+.
T Consensus         8 l~~l~gIg~~--~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~--g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          8 LEDLPGVGPA--TAEKLREAGYDTVEAIAV---ASPKELSEAA--GIGESTAAKIIEAAREAA   63 (317)
T ss_pred             HhhcCCCCHH--HHHHHHHcCCCCHHHHHc---CCHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence            4455566654  459999999999999965   4899999999  688889999998887644

>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A

Probab=83.91  E-value=0.49  Score=35.45  Aligned_cols=50  Identities=38%  Similarity=0.576  Sum_probs=40.3

Q ss_pred             eeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335          255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR  311 (358)
Q Consensus       255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk  311 (358)
                      +.+||+.-  .++|.++||.|++|+..+   +++.|.++=  |++.+.=+.+++.|+
T Consensus        10 I~Gig~~~--a~~L~~~G~~t~~~l~~a---~~~~L~~i~--Gig~~~a~~i~~~~~   59 (60)
T PF14520_consen   10 IPGIGPKR--AEKLYEAGIKTLEDLANA---DPEELAEIP--GIGEKTAEKIIEAAR   59 (60)
T ss_dssp             STTCHHHH--HHHHHHTTCSSHHHHHTS---HHHHHHTST--TSSHHHHHHHHHHHH
T ss_pred             CCCCCHHH--HHHHHhcCCCcHHHHHcC---CHHHHhcCC--CCCHHHHHHHHHHHh
Confidence            44555553  388999999999998764   888999985  689999999998886

...

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=83.62  E-value=1  Score=45.34  Aligned_cols=60  Identities=27%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335          251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (358)
Q Consensus       251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl  315 (358)
                      ++..|+.-|-.-..-++|.++||+||+|++..   ++..|-++.  |+|...++.+++.|+..+.
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~--g~s~~~~~ki~~~a~~~~~   89 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIK--GLSEAKVDKICEAAEKLLN   89 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence            35566553433445699999999999998865   788899987  7999999999999987654

>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed

Probab=80.77  E-value=1.2  Score=45.26  Aligned_cols=51  Identities=31%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335          251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR  311 (358)
Q Consensus       251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk  311 (358)
                      +|..|-+||+.  .-++|...||+|++|+.++   ++..|++.||.     .+..+..||.
T Consensus       180 Pv~~l~GiG~~--~~~~L~~lGi~TigdL~~~---~~~~L~~~fG~-----~~~~l~~~a~  230 (422)
T PRK03609        180 PVEEVWGVGRR--ISKKLNAMGIKTALDLADT---NIRFIRKHFNV-----VLERTVRELR  230 (422)
T ss_pred             ChhhcCCccHH--HHHHHHHcCCCcHHHHhcC---CHHHHHHHHCH-----HHHHHHHHhC
Confidence            46667778885  4499999999999999986   78899999973     5777777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 54/310 (17%), Positives = 104/310 (33%), Gaps = 70/310 (22%)

Query: 5   RFLNGSDPEEPPEKRTRTRPSFASVIGEAV--MVNSFQNFFSALEPLLRRVVNEEVQRGV 62
           ++L+    + P E  T T P   S+I E++   + ++ N+                    
Sbjct: 309 KYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNW-------------------- 347

Query: 63  SKYNPCRSLTRSSSLRIQALEPSSLKLIFSQKLSLPIF-TGSKIT---------DVENNP 112
            K+  C  LT      +  LEP+  + +F     L +F   + I          DV  + 
Sbjct: 348 -KHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 113 LQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRD--HWTPEEFESNIVKERTGK 170
           + +VV       L+        I I  + L+      +    H        +IV      
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVDHYNIP 456

Query: 171 RPLLTGDVNVTARDG--VAPIG----DIEFTDNSSWIRSR--KFR-IGAKVARGSYQGVR 221
           +   + D+     D    + IG    +IE  +  +  R     FR +  K+ R       
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWN 515

Query: 222 ICEAITDAFVVKDHRGELYKKH---HPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKT-VQ 277
              +I +   ++  +   YK +   + P  E  V  +        F  K+    I +   
Sbjct: 516 ASGSILN--TLQQLK--FYKPYICDNDPKYERLVNAILD------FLPKIEENLICSKYT 565

Query: 278 DFLKLSIVEP 287
           D L+++++  
Sbjct: 566 DLLRIALMAE 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	93.72
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	90.66
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	82.87

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=93.72  E-value=0.016  Score=44.56  Aligned_cols=62  Identities=29%  Similarity=0.443  Sum_probs=51.0

Q ss_pred             CCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc-ccCC
Q 018335          248 LEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK-CVMG  316 (358)
Q Consensus       248 L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt-Cvl~  316 (358)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..+   +++.|-.|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            4567777887776655  99999999999997654   788899998  7999999999999998 7553

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=90.66  E-value=0.24  Score=39.35  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHH
Q 018335          265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQ  308 (358)
Q Consensus       265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~  308 (358)
                      -++|.+++|.||+||+.   .|+.+|.+++|  +|-+.=-.+..
T Consensus        17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r   55 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRR   55 (83)
T ss_dssp             HHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHH
Confidence            48899999999999975   69999999994  56544433333

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=82.87  E-value=0.39  Score=44.50  Aligned_cols=59  Identities=25%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             CceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335          250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (358)
Q Consensus       250 DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl  315 (358)
                      +++..|++|+..  +-++|.++||+||+||+.+   ++..|-++.  |+|.+.=+.+++.|+.+..
T Consensus         3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~   61 (322)
T 2i1q_A            3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD   61 (322)
T ss_dssp             --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred             ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence            456667755544  5699999999999999864   577888877  6888877788888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1zeta2	273	e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom	0.001
d1jx4a2	240	e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul	0.001
d1b22a_	70	a.60.4.1 (A:) DNA repair protein Rad51, N-terminal	0.002

>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 233 KDHRGELYKKHHPPMLEDEVWRLEKI-GKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLR 291
           K ++  +        L   +  +++I G      K L A GI +V+D    S   P+ L 
Sbjct: 188 KPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFS---PKILE 244

Query: 292 KILGPGMSEKMWE 304
           K LG  +++++ +
Sbjct: 245 KELGISVAQRIQK 257

>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DinB homolog (DBH)
species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 232 VKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLR 291
           +K    E  K+    +   +V      G      +KL   GI  + D L +      +L+
Sbjct: 163 IKVIDDEEVKRLIRELDIADVP-----GIGNITAEKLKKLGINKLVDTLSIE---FDKLK 214

Query: 292 KILGPGMSEKMWEV 305
            ++G   ++ +  +
Sbjct: 215 GMIGEAKAKYLISL 228

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV-MG 316
           KKL  AG  TV+          + L  I   G+SE   +  +  A K V MG
Sbjct: 24  KKLEEAGFHTVEAVAYAP---KKELINI--KGISEAKADKILAEAAKLVPMG 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	91.65

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=0.035  Score=40.27  Aligned_cols=52  Identities=25%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             eecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335          257 KIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM  315 (358)
Q Consensus       257 ~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl  315 (358)
                      +||...+  ++|.++|++||++..   ...++.|-+|-  |++.+.=+.+++-|+.++.
T Consensus        10 Gig~~~~--~kL~~aG~~Tve~ia---~~t~~~L~~i~--Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMADV--KKLRESGLHTAEAVA---YAPRKDLLEIK--GISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHHH--HHHHTTSCCSHHHHH---HSCSHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHH--HHHHHcCCCcHHHHH---hCCHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence            5666555  999999999999975   46778899986  7999999999999998764