Citrus Sinensis ID: 018344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Secondary Structure (PSIPRED)
ccHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHcccccccEEEccccccccEEEEEcccccEEEEEccccccccEEEEEccEEEEEEEcccccccEEEcccccccEEEEEccccccHHHHHHHccccccccEEEEcccccEEEEEEccccccEEEEccccccEEEEcccccccEEEEcccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEcccEEEEcccccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccEEEcHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccEEEEEEEccccccccccEEEEcccEEEEEEcccEccccccccccccHEEEEEEEEEccHHHHHHHHHccccHEEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEEccccccccccccccccEEEccccccccEEEEccccccHHHHHHHHccccHHHEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEccccccEEEEcccccccccccccHHEEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEcccccccccccccccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MNRCLSYAFASNVKELKldvgccriynlPQIVFYLKSIYVldfefcklepprstvTLFSLRKLCLSFVHVDDEVIRDMVagcplieyininncpglkslqllglnklkeikldsnrcglervyingvnVHSVDIKVylepcevnvsscknlthlrldglsitDKWLYNQISELPFLEYLALHYCMKLRsinissprlKELVFERCEELVEfeldtpnlsifkCFNYVESFSSNALALSQTLLCFishpvdneWYLKFIKLLARFNLCSNvlnlqcnheavliprelreilcppltyhkhvSFSVLSEILEVSLANLVDCLLWitphaetlsiewpninfyeLSFQVQYIFNFIEFKT
Flexible Loop (DISEMBL)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Low Complexity Region (SEG)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGlkslqllglnklkEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Disordered region (IsUnstruct)
***CLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEF**
Disordered Region (DISOPRED)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFK*
Disordered Region (DISEMBL)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Disordered Region (DISPRO)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQVQYIFNFIEFKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
O80741	322	Probable F-box protein At	yes	no	0.271	0.301	0.326	1e-06
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.319	0.25	0.283	5e-06
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.308	0.236	0.293	2e-05
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.464	0.364	0.274	0.0001
Q9FX89	385	Putative F-box protein At	no	no	0.364	0.337	0.289	0.0001
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.408	0.311	0.263	0.0006
P59997	1161	Lysine-specific demethyla	yes	no	0.338	0.104	0.321	0.0006
Q84W80	481	F-box/LRR-repeat protein	no	no	0.543	0.403	0.251	0.0006
Q9Y2K7	1162	Lysine-specific demethyla	yes	no	0.338	0.104	0.321	0.0006

>sp|O80741|FB351_ARATH Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At1g60180 PE=4 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 51  PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEI 110
           PR +V+  SL+KL L F  + DE I  +++GCP++E + +++C  L  L L    +L+ +
Sbjct: 29  PRCSVSWTSLKKLSLRFCELSDECIAKILSGCPILESLTLSHCIYLTVLDLSKSLRLRTL 88

Query: 111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCE-VNVSS 147
           ++  N        I   ++H + +K Y  PC  V+VSS
Sbjct: 89  EIACNIDNTRPRQIVAPHIHRLRLKTYQSPCALVDVSS 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 5   LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSL 60
           + +A + NV+ L +   D    + Y  P I +   S+ +LD      +  P  TV+  SL
Sbjct: 111 IEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSL 170

Query: 61  RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSN--RCG 118
           R L L F  + DE I ++++GCP++E + ++ C  L+ L L     L+ + ++    R G
Sbjct: 171 RNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINQQYRRTG 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 5   LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSL 60
           + +A + NV+ L +   D    + Y  P I +   S+  LD      +  P   V+  SL
Sbjct: 112 IEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSL 171

Query: 61  RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR 116
           R L L F  + DE + ++++GCP++E + ++ C  L+ L L     L+  +LD NR
Sbjct: 172 RNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLR--RLDINR 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 20/186 (10%)

Query: 5   LSYAFASNVKELKLDV--GCCRIYNLPQIVFYLKS-----IYVLDFEFCKLEPPRSTVTL 57
           + +A + NV  L LD+       +  P   F++ S       VLDF          T+  
Sbjct: 117 IKFAMSRNVDHLSLDLWNQVANKFKFPDF-FHINSSLKQLTVVLDFS--------DTMIA 167

Query: 58  FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC 117
             L+KL LS   + DE + +++ GCP++E + +++C GL+ L L    +L+ ++++ N  
Sbjct: 168 ICLKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIW 227

Query: 118 --GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLT-HLRLDGLSITDKWLYNQISEL 173
              L  + I   + H + ++    PC  V+VSS K    ++ +D  S T K  + Q++ L
Sbjct: 228 VPELTAMQIVAPHTHCLRLRNSKLPCSLVDVSSLKEAKLNICIDSFSKTIKADFLQVTLL 287

Query: 174 PFLEYL 179
             LE L
Sbjct: 288 KMLEKL 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 1   MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSI--YVLDFEFCKLEPPRSTVTLF 58
           ++  + +A + NV+ L L     R+Y++P  ++   S+   VL  E  +L P R +V+  
Sbjct: 109 IDGWIKFAMSRNVENLFLSFDF-RLYDVPDYLYINSSVKQLVLGTESSELNP-RCSVSWS 166

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           SL KL L      DE I  +++GCP+IE + ++ C  L  L L     LK +++  +  G
Sbjct: 167 SLTKLSL----FSDESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKILEIHGSIWG 222

Query: 119 LERVYINGVNVHSVDIKV 136
               +I   ++HS+ +K 
Sbjct: 223 SGPKHIVAPHIHSLTLKT 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 1   MNRCLSYAFASNVKELKLDVG-CCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFS 59
           +N  + +A + NV +L L    C   YN     +   S+  ++  +  L P R  V+  S
Sbjct: 112 VNSSIEFAMSHNVDDLSLAFRRCSPFYNFDDCFYTNSSLKRVELRYVDLMP-RCMVSWTS 170

Query: 60  LRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL---LGLNKLKEIKLDSNR 116
           L+ L L+   + DE   ++++GCP++E +++  C  LK L L   L L +L+  ++   R
Sbjct: 171 LKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLKYLNLSKSLRLTRLEIERISYIR 230

Query: 117 CGLERVYINGVNVHSVDIKVYLEPCE-VNVSS 147
             +  + I    +H + ++     C  V+VSS
Sbjct: 231 APMLSMQIVAPYIHYLRLRDSEAHCTFVDVSS 262

Arabidopsis thaliana (taxid: 3702)

>sp|P59997|KDM2A_MOUSE Lysine-specific demethylase 2A OS=Mus musculus GN=Kdm2a PE=1 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 90   INNCPGLKSLQLLGLNKLKEIKLDSNRCGLER-------VYINGVNVHSVDIKVYLEPCE 142
            +N  PGLK L L G +      L ++ C L R       V I    +  +      +P +
Sbjct: 972  VNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPGQ 1031

Query: 143  VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL--RSINI-----SSP 195
             N S  +N+T  RL GL ITD  L   I  +P L  L L +C  L  +S N+     SS 
Sbjct: 1032 DNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSST 1091

Query: 196  R--LKELVFERCEELVE 210
            R  L EL    C +L +
Sbjct: 1092 RYSLTELNMAGCNKLTD 1108

Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. Preferentially demethylates dimethylated H3 'Lys-36' residue while it has weak or no activity for mono- and tri-methylated H3 'Lys-36'. May also recognize and bind to some phosphorylated proteins and promote their ubiquitination and degradation. Required to maintain the heterochromatic state. Associates with centromeres and represses transcription of small non-coding RNAs that are encoded by the clusters of satellite repeats at the centromere. Required to sustain centromeric integrity and genomic stability, particularly during mitosis.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 29/223 (13%)

Query: 5   LSYAFASNVKELKLDVGCCRIYNLPQIVF---YLKSIYVLDF----EFCKLEPPRSTVTL 57
           +++A + NV+ L L +   + Y++P+ ++    LK +Y LDF    +F  L P + +V+ 
Sbjct: 130 INFAMSRNVENLSLYLDEDK-YDIPEFLYINSSLKQLY-LDFGCKKDFISLNP-KCSVSW 186

Query: 58  FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC 117
            SL+ L L   ++ DE I  +++GCP++E + +  C  LK L L    +L  +++ + RC
Sbjct: 187 TSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI-TRRC 245

Query: 118 GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLTHLRLDGLSITDKWL---YNQISEL 173
            +E   +   ++  + +    +PC  V+VSS      L +   +I D  L   ++Q   +
Sbjct: 246 RMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQ-AELDITAYAIVDNKLEADFHQTMVV 304

Query: 174 PFLE-------------YLALHYCMKLRSINISSPRLKELVFE 203
             LE             +L +    +LR ++    + K L+ E
Sbjct: 305 KMLEKCQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALILE 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y2K7|KDM2A_HUMAN Lysine-specific demethylase 2A OS=Homo sapiens GN=KDM2A PE=1 SV=3

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 90   INNCPGLKSLQLLGLNKLKEIKLDSNRCGLER-------VYINGVNVHSVDIKVYLEPCE 142
            +N  PGLK L L G +      L ++ C L R       V I    +  +      +P +
Sbjct: 973  VNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQ 1032

Query: 143  VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL--RSINI-----SSP 195
             N S  +N+T  RL GL ITD  L   I  +P L  L L +C  L  +S N+     SS 
Sbjct: 1033 DNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSST 1092

Query: 196  R--LKELVFERCEELVE 210
            R  L EL    C +L +
Sbjct: 1093 RYSLTELNMAGCNKLTD 1109

Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. Preferentially demethylates dimethylated H3 'Lys-36' residue while it has weak or no activity for mono- and tri-methylated H3 'Lys-36'. May also recognize and bind to some phosphorylated proteins and promote their ubiquitination and degradation. Required to maintain the heterochromatic state. Associates with centromeres and represses transcription of small non-coding RNAs that are encoded by the clusters of satellite repeats at the centromere. Required to sustain centromeric integrity and genomic stability, particularly during mitosis.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.929	0.707	0.367	9e-52
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.929	0.707	0.367	1e-51
147833276	521	hypothetical protein VITISV_011919 [Viti	0.901	0.618	0.309	7e-23
224124628	524	f-box family protein [Populus trichocarp	0.815	0.555	0.281	8e-22
224119688	563	f-box family protein [Populus trichocarp	0.932	0.591	0.295	2e-20
255549680	514	hypothetical protein RCOM_1485780 [Ricin	0.691	0.480	0.362	7e-20
224121624	528	predicted protein [Populus trichocarpa]	0.672	0.454	0.315	1e-19
124359451	469	hypothetical protein MtrDRAFT_AC149039g1	0.761	0.579	0.285	1e-17
225442254	520	PREDICTED: putative F-box protein At3g44	0.893	0.613	0.302	1e-17
297743071	552	unnamed protein product [Vitis vinifera]	0.893	0.577	0.302	2e-17

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 187/335 (55%), Gaps = 3/335 (0%)

Query: 1   MNRCLSYAFASNVKELKLDVGC--CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLF 58
           ++R + Y   S V+EL++ V     + YNLPQ VF  +S+ VL    CKL P      L 
Sbjct: 96  VDRWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           S++ + L  V  +DE ++ +V+ CP I++I +++C GL+SL L   N+L  +++ +N  G
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNN-SG 214

Query: 119 LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178
           L       +N+ + + +   +PC +N+SSCKNL  L+L  ++ITD W     SE P LE 
Sbjct: 215 LYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEI 274

Query: 179 LALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALS 238
           LAL YC  L S+ ISS  LK+ +   CE +   ++D P LS  +    V SFS NA ALS
Sbjct: 275 LALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALS 334

Query: 239 QTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHK 298
           Q  +       DN W +K I+ LA FN   ++       ++V+IP+ELRE    PL   K
Sbjct: 335 QADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVK 394

Query: 299 HVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333
           H+   ++  +   SL +LV  LLWI P  +T+++E
Sbjct: 395 HLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVE 429

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 188/335 (56%), Gaps = 3/335 (0%)

Query: 1   MNRCLSYAFASNVKELKLDVGC--CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLF 58
           ++R + Y   S V+EL++ V     + YNLPQ VF  +S+ VL    CKL P      L 
Sbjct: 96  VDRWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           S++ + L  V  +DE ++ +V+ CP I++I +++C GL++L L   N+L  +++ +N  G
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNN-SG 214

Query: 119 LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178
           L       +N+ + + +   +PC +N+SSCKNL  L+L  ++ITD W     SE P LE 
Sbjct: 215 LYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEI 274

Query: 179 LALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALS 238
           LAL YC  L S+ ISS  LK+ +   CE +   ++DTP LS  +    V SFS NA ALS
Sbjct: 275 LALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALS 334

Query: 239 QTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHK 298
           Q  +       DN W +K I+ LA FN   ++       ++V+IP+ELRE    PL   K
Sbjct: 335 QADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVK 394

Query: 299 HVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333
           H+   ++  +   SL +LV  LLWI P  +T+++E
Sbjct: 395 HLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVE 429

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 177/359 (49%), Gaps = 37/359 (10%)

Query: 5   LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           +  A    VKEL L        + Y LP  +F   +I VL  E C+LE     + L +LR
Sbjct: 109 IDAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEIC-GDIDLPALR 167

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GL 119
           KLCL  +  D++ IR +++ CPLIE ++I +C GL+ L + GL  L  +++    C   L
Sbjct: 168 KLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVI---CCYNL 224

Query: 120 ERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179
            R+ I+  ++  +       PC++ ++ C+ L  L L    IT+ +L N  S  P LE L
Sbjct: 225 RRIEIDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERL 284

Query: 180 ALHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS----- 232
            +    +L+ I IS  +LK  EL     ++  + ++D PNL  F    Y    +S     
Sbjct: 285 EID-STRLQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSM 343

Query: 233 NALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCS---NVLNLQC-NHEAVLIPRELRE 288
           N  +L +  + F ++   N++   FI  L  F   S    V+NL   + E ++IPR+LR 
Sbjct: 344 NTSSLREAEIHFRNY---NDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRP 400

Query: 289 ILCPPLTYHKHVSFSVLSEILEVSLAN----LVDCLLWITPHAETLSI-EWPNINFYEL 342
           IL PP+   KH+        L VS  +    ++D +LW+  H +TLSI    N+ F ++
Sbjct: 401 ILSPPVYDIKHL-------YLRVSYCSRFQYIIDRMLWMC-HPQTLSILSGTNVRFLKV 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 162/341 (47%), Gaps = 50/341 (14%)

Query: 7   YAFASNVKELKLD-VG----CCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           YA  +NVKEL+LD VG    C   Y+LP  V   +S+ VL  +   LEPP++ V  F   
Sbjct: 128 YAIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQNLVLDF--- 184

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLER 121
                                P I+ + +  C G+++L +     LK + L+S +  LE+
Sbjct: 185 ---------------------PFIKELRLEKCKGMQTLSVSS-QTLKIVVLESCQ-RLEK 221

Query: 122 VYINGVNVHSVDIKVYL-EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA 180
           V I+  N+ S          C V++++CK+L +L L    ITD+W+ +++++   LE   
Sbjct: 222 VEIDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFK 281

Query: 181 LHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIF---------KCFNYVESFS 231
           +  C  L + ++S+  LK +    C  L + E+ + +L+ F         + F Y  SF 
Sbjct: 282 VVGCRLLENFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFH 341

Query: 232 SNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHE-AVLIPRELREIL 290
           +  ++LS      + HP+ ++W+  F   L+ F+ C   L + C+ E A+++P + R+ L
Sbjct: 342 AK-VSLS------VDHPLPHDWFSSFRDFLSCFDHCKE-LEIACSIEMALIVPIDSRDSL 393

Query: 291 CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLS 331
            PPL   K++            L  L+D LLW  P    LS
Sbjct: 394 LPPLYDLKYLKVVAKFPTKSEDLVGLLDSLLWFAPRLTVLS 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 174/355 (49%), Gaps = 22/355 (6%)

Query: 5   LSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEF-CKLEPPRSTVTLFSLRKL 63
           L  A    V E  L+      Y LP+ +   + I VL      KL  PR  +   SLR L
Sbjct: 141 LELATKCGVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVL 200

Query: 64  CLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVY 123
            L  V VD+ ++++++ GCPLIE + +  C G+KS+++ G  KLKE++++     LER+ 
Sbjct: 201 SLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVNEGDSVLERME 260

Query: 124 INGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEY 178
           I+  ++ +      L      ++++ C+NL  L+L   +IT+   +   + I++ P L+ 
Sbjct: 261 IHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQDLIAQFPALKV 320

Query: 179 LALH-YCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV--ESFSSNAL 235
           LAL+ Y   +  I IS+P+L++L       L +  + +P+L  FK F Y    +FS +  
Sbjct: 321 LALNCYATSVSRIKISNPQLEKLQLW-SSALTKVTITSPSLHSFKHFTYGFPSAFSLDQS 379

Query: 236 ALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAV-LIPRELREILCPPL 294
           +L +  L      + +  +L+  + L  FN     L L+ N+  +  IP  L  I  P L
Sbjct: 380 SLQKATLHVHKGALYSSDFLQLREYLGNFNQIRR-LTLRINYVGIRFIPETLNNISIPAL 438

Query: 295 TYHKHVSFSVL-SEILEVSLANL------VDCLLWITPHAETLSI--EWPNINFY 340
              KH+   +  S     SLANL      VD LLW+  H ET+ +   W + N +
Sbjct: 439 PDIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVC-HPETILLISGWSSENLF 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549680|ref|XP_002515891.1| hypothetical protein RCOM_1485780 [Ricinus communis] gi|223544796|gb|EEF46311.1| hypothetical protein RCOM_1485780 [Ricinus communis]

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 144/270 (53%), Gaps = 23/270 (8%)

Query: 74  VIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSV 132
           +I++++  CPLI+ + +  C GLK+L LL  NKL   ++D + C GL+ V +   N+ + 
Sbjct: 1   MIQNLMLSCPLIDDLRLIYCTGLKTL-LLSSNKL--YRVDIHFCHGLKNVEVLSPNLQTF 57

Query: 133 DIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN 191
                    C++N++ CK+L  L L+  +++D W  N +S    +E L L  C  LR I 
Sbjct: 58  WYHGKKSTRCKINLAMCKDLKSLTLEDANMSDDWFQNLLSNFSLIEQLILSKCNALRHIT 117

Query: 192 ISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSS-NALALSQTLLCFISHPV- 249
           IS   LK+L    C EL E ++DTPNL  F+       FSS N  +L +  L F S  + 
Sbjct: 118 ISGRWLKKLALMECRELTEADIDTPNLLSFEYRGQKMPFSSLNPFSLKEAKLYFESSRLQ 177

Query: 250 -DNEWYLKFIKL---LARFNLCSNVLNLQC-NHEAVLIPRELREILCPPLTYHKHVSFSV 304
            DN   L F +L   L RF+ CS  L L   +++ V+I  +LREIL P +       F V
Sbjct: 178 PDNGGQLLFYELRNFLHRFD-CSKSLKLVIRSNKDVIIHEDLREILVPEI-------FDV 229

Query: 305 LSEILE--VSLANLVDCLLWITPHAETLSI 332
             EI++   SL  ++D LL  T H ETLSI
Sbjct: 230 KLEIIKPSTSLEVILDSLL-RTWHPETLSI 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 4/244 (1%)

Query: 26  YNLPQIVFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPL 84
           Y++P  +F  KS+ VL    C ++   S  + L SL+KL L  V +DD ++R +V  CPL
Sbjct: 142 YSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQKLALKEVQMDDHLLRRIVTCCPL 201

Query: 85  IEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCE-- 142
           +E I++  C GLK +Q+  L +LK+ ++ S+    E V I   ++ S      +   +  
Sbjct: 202 LEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPESVEIKSPSLESFHCSFTVRSVKPI 261

Query: 143 VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVF 202
           V+V +C+ L  L L G  +T+  L + + +   LE L +  C  L+ + ISS RLK L  
Sbjct: 262 VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLESLRVGDCPVLKKVKISSWRLKSLEI 321

Query: 203 ERCEELVEFELDTPN-LSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLL 261
             CE +++ E++TPN LS   C + V     NA +    +   + + +D  WY+   + L
Sbjct: 322 HSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSCHWQVEFSLMNTLDILWYMTLKEFL 381

Query: 262 ARFN 265
           A+ N
Sbjct: 382 AKLN 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359451|gb|ABN05895.1| hypothetical protein MtrDRAFT_AC149039g12v2 [Medicago truncatula]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 143/294 (48%), Gaps = 22/294 (7%)

Query: 54  TVTLFSLRKLCLSFVHVDDE-VIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL 112
           ++  FSLR L L  V   DE  I  +++ CPLIE+I +     +KSL + GL KLK +K+
Sbjct: 115 SIKFFSLRVLSLKHVLSRDENAIEHLISCCPLIEHITLRFVDNMKSLSIHGLLKLKTVKV 174

Query: 113 DSNRCGLERVYINGVNVHSVDI--KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI 170
           +    G++ VYI+   +  +      +  P ++    C+NL +L L+   I +KW     
Sbjct: 175 E----GIQEVYIDAPYLEKLRFCPDDFFAPYKIGFDRCQNLKYLSLESCIIANKWFLELF 230

Query: 171 SELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESF 230
            + PFLE L L  C     INISS +LK L    C ++ E  +D PNL  F  ++ V   
Sbjct: 231 PKFPFLESLELDSCTMSEKINISSVQLKVLEISFCSDMKEINIDAPNLLSFVYYS-VGCG 289

Query: 231 SSNA----LALSQTLLCFISHPVDNEWYL----KFIKLLARFNLCSNV-LNLQCNHEAVL 281
           SS+     L  S  L  +++  +D   +L    +F++ +   N+ S++ + ++   E V 
Sbjct: 290 SSDPIISYLRSSSQLKVYMNFFIDYYHHLCNLREFVQNIKPQNVLSSLSIYIRKPFEDVQ 349

Query: 282 IPRELREILCPPLTYHKHV-----SFSVLSEILEVSLANLVDCLLWITPHAETL 330
            P   +    PP   H H+     S ++ S I+ + L++     + + PH++  
Sbjct: 350 QPVVFQASSPPPSIKHLHLICVPQSETLFSSIVNILLSSCCPAFISLNPHSKAF 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 164/344 (47%), Gaps = 25/344 (7%)

Query: 5   LSYAFASNVKELKLDVGCCRI---YNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           +  A    VKEL L +    I   Y LP  +F   +I VL  E C+LE     V L +LR
Sbjct: 109 IDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEIC-GDVDLPALR 167

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GL 119
           KLCL  +  D++ IR +++ CPLIE ++I +C  LK L + GL  L  + +    C   L
Sbjct: 168 KLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT---CCYNL 224

Query: 120 ERVYINGVNVH--SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177
            R+ I+  ++     D +  L  C+V  +  + L  L L    IT+  L N +S +P LE
Sbjct: 225 RRIEIDAPSLQYFMYDHQRSL-LCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLE 283

Query: 178 YLALHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS--- 232
            L +    +L+ I IS  +LK  EL     +   + ++D PNL  F    Y    +S   
Sbjct: 284 RLEID-STRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMIS 342

Query: 233 --NALALSQTLLCFIS-HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI 289
             N  +L +  + F + +   + + L+  +   +   C  +  L  + E ++IPR+LR I
Sbjct: 343 SMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPI 402

Query: 290 LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333
             PP+   KH+   V           ++D +LW+  H +TLSIE
Sbjct: 403 PSPPVYDIKHLHLIVY---YCSRFQYIIDRMLWMC-HPQTLSIE 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 164/344 (47%), Gaps = 25/344 (7%)

Query: 5   LSYAFASNVKELKLDVGCCRI---YNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           +  A    VKEL L +    I   Y LP  +F   +I VL  E C+LE     V L +LR
Sbjct: 141 IDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEIC-GDVDLPALR 199

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GL 119
           KLCL  +  D++ IR +++ CPLIE ++I +C  LK L + GL  L  + +    C   L
Sbjct: 200 KLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT---CCYNL 256

Query: 120 ERVYINGVNVH--SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177
            R+ I+  ++     D +  L  C+V  +  + L  L L    IT+  L N +S +P LE
Sbjct: 257 RRIEIDAPSLQYFMYDHQRSL-LCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLE 315

Query: 178 YLALHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS--- 232
            L +    +L+ I IS  +LK  EL     +   + ++D PNL  F    Y    +S   
Sbjct: 316 RLEID-STRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMIS 374

Query: 233 --NALALSQTLLCFIS-HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI 289
             N  +L +  + F + +   + + L+  +   +   C  +  L  + E ++IPR+LR I
Sbjct: 375 SMNTSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPI 434

Query: 290 LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE 333
             PP+   KH+   V           ++D +LW+  H +TLSIE
Sbjct: 435 PSPPVYDIKHLHLIVY---YCSRFQYIIDRMLWMC-HPQTLSIE 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.529	0.392	0.230	5.3e-05
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.246	0.192	0.308	6.2e-05
TAIR|locus:2098088	461	DAF1 "AT3G62230" [Arabidopsis	0.336	0.260	0.291	9.4e-05
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.591	0.507	0.225	0.00025
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.481	0.377	0.257	0.00049

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 47/204 (23%), Positives = 95/204 (46%)

Query:     5 LSYAFASNVKELKLDVGCCRIYNLPQIVFY---LKSIYVLDF----EFCKLEPPRSTVTL 57
             +++A + NV+ L L +   + Y++P+ ++    LK +Y LDF    +F  L P + +V+ 
Sbjct:   130 INFAMSRNVENLSLYLDEDK-YDIPEFLYINSSLKQLY-LDFGCKKDFISLNP-KCSVSW 186

Query:    58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRC 117
              SL+ L L   ++ DE I  +++GCP++E + +  C                +++ + RC
Sbjct:   187 TSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI-TRRC 245

Query:   118 GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176
              +E   +   ++  + +    +PC  V+VSS      L +   +I D  L     +   +
Sbjct:   246 RMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQ-AELDITAYAIVDNKLEADFHQTMVV 304

Query:   177 EYLALHYCMKLRSINISSPRLKEL 200
             + L    C  +  + + +  LK L
Sbjct:   305 KML--EKCQNVEKLTLGANFLKML 326

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 29/94 (30%), Positives = 51/94 (54%)

Query:     5 LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLD--FEFCKLEPPRSTVTLFS 59
             + +A + NV+ L +   D    + Y  P I +   S+ +LD   +F  + P   TV+  S
Sbjct:   111 IEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPT-CTVSWKS 169

Query:    60 LRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93
             LR L L F  + DE I ++++GCP++E + ++ C
Sbjct:   170 LRNLTLRFCQIPDESIHNILSGCPILESLTLDTC 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098088 DAF1 "AT3G62230" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
 Identities = 40/137 (29%), Positives = 62/137 (45%)

Query:   170 ISELPFLEYLALHYCMK--LRSINISSPRLKELVFERCE-ELVEFELDTPNLSIFKCFNY 226
             I++ P LE L +  C +  L +I   + RL +LVF+ C     +  LD PN+ IFK F  
Sbjct:   195 IAKTPLLEILNIKNCWEIGLDAITGYNDRLMKLVFKYCSFSAQQTTLDVPNIQIFKYFGK 254

Query:   227 VESF---SSNALALSQTLLCF-------ISHPVDNEWYLKFIKLLARFNLCSNVLNL--Q 274
             V  F   S+N L + +  L +       +S       +L  +     F +C  VL L  +
Sbjct:   255 VYRFEFASANKL-MEEAYLDYREESRYNVSAGAIISGFLYSMLSAKTFTICPYVLQLIQE 313

Query:   275 CNHEAVL-IPRELREIL 290
             C     L  P E R+++
Sbjct:   314 CEDPVRLKAPMETRQLV 330

GO:0003674 "molecular_function" evidence=ND

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
 Identities = 52/231 (22%), Positives = 106/231 (45%)

Query:     1 MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSL 60
             +++ L +   + +KEL L +G    + +P  +F    +  L+   C+ +PP+       L
Sbjct:    99 IDQWLLFLSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYL 157

Query:    61 RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRCGLE 120
             + L L  + V  EVI  +++GCPL+E+++++                  + LD      +
Sbjct:   158 KSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMY--LYLDGE---FK 212

Query:   121 RVYI-NGVNVHSVDIKVYL--EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177
              +++ N   + ++ + +Y+  +  +   SS  NL    L G+ + +K     +  + F +
Sbjct:   213 DIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKF-LGGVPLLEKL----VGYIYFTK 267

Query:   178 YLALHYC---MKLRSINISSPRLKELVFERCEE-LVEFELDT--PNLSIFK 222
             YL++      + L  I++ +  L ++ FE  +E LV   L T  PNL   K
Sbjct:   268 YLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELK 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
 Identities = 50/194 (25%), Positives = 86/194 (44%)

Query:     5 LSYAFASNVKELKLDVG--CCRIYNLPQIVFYLKS-----IYVLDFEFCKLEPPRSTVTL 57
             + +A + NV  L LD+       +  P   F++ S       VLDF          T+  
Sbjct:   117 IKFAMSRNVDHLSLDLWNQVANKFKFPDF-FHINSSLKQLTVVLDFS--------DTMIA 167

Query:    58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRC 117
               L+KL LS   + DE + +++ GCP++E + +++C G              ++++ N  
Sbjct:   168 ICLKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIW 227

Query:   118 --GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLT-HLRLDGLSITDKWLYNQISEL 173
                L  + I   + H + ++    PC  V+VSS K    ++ +D  S T K  + Q++ L
Sbjct:   228 VPELTAMQIVAPHTHCLRLRNSKLPCSLVDVSSLKEAKLNICIDSFSKTIKADFLQVTLL 287

Query:   174 PFLEYLALHYCMKL 187
               LE   LH   KL
Sbjct:   288 KMLE--KLHNVEKL 299


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      357       344   0.00097  116 3  11 22  0.45    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  255 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.81u 0.18s 27.99t   Elapsed:  00:00:01
  Total cpu time:  27.81u 0.18s 27.99t   Elapsed:  00:00:01
  Start:  Sat May 11 08:46:10 2013   End:  Sat May 11 08:46:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.32
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.18
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.01
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.99
KOG4341	483	consensus F-box protein containing LRR [General fu	98.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.63
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.58
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.52
KOG4341	483	consensus F-box protein containing LRR [General fu	98.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.83
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.46
PLN03150	623	hypothetical protein; Provisional	97.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.08
PRK15386	426	type III secretion protein GogB; Provisional	96.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.66
PLN03150	623	hypothetical protein; Provisional	96.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.11
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.25
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	92.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.41
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.15
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	87.96
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	83.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.36
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.53
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=1.1e-14  Score=152.05  Aligned_cols=43  Identities=28%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             cCcccccCCCccEEEeeccccCC--CCC-ccCCCCCceEEeecccc
Q 018344           28 LPQIVFYLKSIYVLDFEFCKLEP--PRS-TVTLFSLRKLCLSFVHV   70 (357)
Q Consensus        28 lP~~i~~~~~L~~L~Ls~~~~~~--p~~-~~~l~~L~~L~L~~~~~   70 (357)
                      +|..+..+++|+.|+|++|.+..  |.. +..+++|++|+|++|.+
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence            34445555666666666655432  322 22555555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=8.1e-15  Score=153.05  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccE
Q 018344           34 YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKE  109 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~  109 (357)
                      .+++|++|+|++|.+..  |..+.++++|++|+|++|.+... ++..++++++|++|++++|.....+  .+.++++|+.
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            34556666666655432  44455566666666666544221 2333445555666666555422111  1223345555


Q ss_pred             EEecccC
Q 018344          110 IKLDSNR  116 (357)
Q Consensus       110 L~l~~c~  116 (357)
                      |++++|.
T Consensus       217 L~L~~n~  223 (968)
T PLN00113        217 IYLGYNN  223 (968)
T ss_pred             EECcCCc
Confidence            5555444

>PLN03210 Resistant to P

Probab=99.45  E-value=7e-13  Score=139.75  Aligned_cols=110  Identities=17%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             ceecCcccccCCCccEEEeecccc-CCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcC-
Q 018344           25 IYNLPQIVFYLKSIYVLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-  102 (357)
Q Consensus        25 ~~~lP~~i~~~~~L~~L~Ls~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~-  102 (357)
                      ...+|..+..+++|+.|+|+++.. ...+.+..+++|++|+|++|..- ..++..+.++++|+.|++++|..++.++.. 
T Consensus       623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            334444444455555555554432 22113445555555555554321 123334455556666666666555544332 


Q ss_pred             CCCCccEEEecccCCCcceeEeecceeeEEEEee
Q 018344          103 GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKV  136 (357)
Q Consensus       103 ~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~  136 (357)
                      ++++|+.|++++|. .+..+....++|+.|.+.+
T Consensus       702 ~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        702 NLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             CCCCCCEEeCCCCC-CccccccccCCcCeeecCC
Confidence            34556666666665 3333322234555555544

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.32  E-value=6.3e-13  Score=123.34  Aligned_cols=40  Identities=10%  Similarity=0.005  Sum_probs=22.1

Q ss_pred             HHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEe
Q 018344          260 LLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVL  305 (357)
Q Consensus       260 ~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~  305 (357)
                      .+.+++.|++|.+...+  ...++.    ...-.+++|+||++.++
T Consensus       387 ~f~gl~~LrkL~l~gNq--lk~I~k----rAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQ--LKSIPK----RAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhccchhhhheeecCce--eeecch----hhhccCcccceecCCCC
Confidence            34557777777665443  222222    22235677888887754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.32  E-value=3.6e-14  Score=132.50  Aligned_cols=150  Identities=20%  Similarity=0.272  Sum_probs=87.5

Q ss_pred             eecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHH-HHHcCCCCccEEeeecCCCCCccC--c
Q 018344           26 YNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIR-DMVAGCPLIEYININNCPGLKSLQ--L  101 (357)
Q Consensus        26 ~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~~~L~~L~L~~c~~l~~l~--l  101 (357)
                      ..+|..++.++.|+.|+||+|.+.. |..+..-.++-+|+||+|++  +.++ .++-++.-|-.|+|+++. +..++  +
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~  169 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNR-LEMLPPQI  169 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence            4677777777777777777777665 66666677777777777754  2222 233355556667777654 33332  2


Q ss_pred             CCCCCccEEEecccCC---CcceeEeecceeeEEEEeec-----CCCceeeccccccccceeecccccCHHHHHHHhccC
Q 018344          102 LGLNKLKEIKLDSNRC---GLERVYINGVNVHSVDIKVY-----LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISEL  173 (357)
Q Consensus       102 ~~~~~L~~L~l~~c~~---~l~~~~~~~p~L~~L~l~~~-----~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  173 (357)
                      ..+..|++|++++|..   .+... -...+|+.|+++++     .+|  ..+.++.||..++++.|++  ..++..+-++
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~P--tsld~l~NL~dvDlS~N~L--p~vPecly~l  244 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIP--TSLDDLHNLRDVDLSENNL--PIVPECLYKL  244 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCC--CchhhhhhhhhccccccCC--CcchHHHhhh
Confidence            2345566666666651   11110 01224445555552     223  4566677777777777766  4456666667


Q ss_pred             Cccceeeccc
Q 018344          174 PFLEYLALHY  183 (357)
Q Consensus       174 ~~L~~L~l~~  183 (357)
                      ++|+.|++++
T Consensus       245 ~~LrrLNLS~  254 (1255)
T KOG0444|consen  245 RNLRRLNLSG  254 (1255)
T ss_pred             hhhheeccCc
Confidence            7777777754

>PLN03210 Resistant to P

Probab=99.18  E-value=4.4e-11  Score=126.27  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=133.3

Q ss_pred             CCeEEEEEecCC-cceecCcccccCCCccEEEeeccccC-C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCC-RIYNLPQIVFYLKSIYVLDFEFCKLE-P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~~~~~-~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.+++  ++. ....+|. +..+++|+.|+|++|... . |..+.++++|+.|++++|..- ..++..+ ++++|+.|
T Consensus       635 ~Lk~L~L--s~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL~~L  709 (1153)
T PLN03210        635 GLRNIDL--RGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSLYRL  709 (1153)
T ss_pred             CCCEEEC--CCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCCCEE
Confidence            3444444  332 3456674 677899999999998643 3 778899999999999998431 1222222 68899999


Q ss_pred             eeecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecC--------CCc-eeeccccccccceeeccc
Q 018344           89 NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYL--------EPC-EVNVSSCKNLTHLRLDGL  159 (357)
Q Consensus        89 ~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~--------~~~-~~~~~~~~~L~~L~L~~~  159 (357)
                      ++++|..++.++-. ..+|++|+++++....-+..+.+++|++|.+.+..        .+. ......+++|+.|++++|
T Consensus       710 ~Lsgc~~L~~~p~~-~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        710 NLSGCSRLKSFPDI-STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             eCCCCCCccccccc-cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            99999877765432 26899999988862111112346778877776511        010 011223468999999987


Q ss_pred             ccCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEccccccccccc
Q 018344          160 SITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       160 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~L~~~~  212 (357)
                      .... .++..++++++|+.|++++|..++.+|..  .++|+.|++++|.+++.+.
T Consensus       789 ~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        789 PSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             CCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence            5433 24566889999999999999988877754  5789999999998776543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=3.1e-10  Score=103.50  Aligned_cols=68  Identities=12%  Similarity=-0.105  Sum_probs=35.3

Q ss_pred             cccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeec
Q 018344          264 FNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEW  334 (357)
Q Consensus       264 l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~  334 (357)
                      ...+++|.+..+..+.... ..+.+ ..+.+++|+++++..+. ............+....++++.|.++.
T Consensus       249 ~~~L~~L~l~~n~i~~~~~-~~l~~-~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         249 NISLLTLSLSCNDITDDGA-KDLAE-VLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             CCCceEEEccCCCCCcHHH-HHHHH-HHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            4677777776654332111 11111 12344678888888653 233332333334444447888888743

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.01  E-value=9.2e-11  Score=109.27  Aligned_cols=197  Identities=21%  Similarity=0.215  Sum_probs=106.4

Q ss_pred             CCCeEEEEEecCCcceecCcccc-cCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      +++.-..|+++.+....+-..-| ++.+|..|+|+.|.+.. | ..|.+|++|+.|+|..|.+.....- .+.++++|+.
T Consensus       171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~n  249 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQN  249 (873)
T ss_pred             CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhh
Confidence            44555556667777777775444 47789999999998776 4 4667799999999999876322111 1345666666


Q ss_pred             EeeecCCC--CCccCcC------------------------CCCCccEEEecccCCCcceeE----eecceeeEEEEeec
Q 018344           88 ININNCPG--LKSLQLL------------------------GLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVY  137 (357)
Q Consensus        88 L~L~~c~~--l~~l~l~------------------------~~~~L~~L~l~~c~~~l~~~~----~~~p~L~~L~l~~~  137 (357)
                      |.|..|..  ++.-.+.                        ++..|+.|+++.|.  ++.+.    -.+++|+.|+++.+
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEecccc
Confidence            66655432  2222223                        33444444444443  12221    12556666666553


Q ss_pred             CCC-c-eeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccc---ccccc---ccccccEEEcccccccc
Q 018344          138 LEP-C-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL---RSINI---SSPRLKELVFERCEELV  209 (357)
Q Consensus       138 ~~~-~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l---~~l~~---~~~~L~~L~l~~c~~L~  209 (357)
                      .+. + ...+..+..|+.|.|+.|.++ ..-...+.++.+|+.|++.++..-   ++...   ..++|++|.+.+. +++
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk  405 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLK  405 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eee
Confidence            221 0 123444555666666666552 112234555666666666543321   11111   1456666666665 555


Q ss_pred             ccc
Q 018344          210 EFE  212 (357)
Q Consensus       210 ~~~  212 (357)
                      .+.
T Consensus       406 ~I~  408 (873)
T KOG4194|consen  406 SIP  408 (873)
T ss_pred             ecc
Confidence            443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.99  E-value=7.2e-10  Score=110.23  Aligned_cols=172  Identities=19%  Similarity=0.091  Sum_probs=110.9

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .||++......+|..+..  +|+.|++++|.+.. |.   ..++|++|+|++|.++.  ++.   ..++|+.|++++|. 
T Consensus       205 ~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~-  273 (788)
T PRK15387        205 VLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP-  273 (788)
T ss_pred             EEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceeeccCCc-
Confidence            456677778889987754  79999999988776 43   36899999999997742  232   24688999998875 


Q ss_pred             CCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCc
Q 018344           96 LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF  175 (357)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  175 (357)
                      ++.+.- ...+|+.|++++|.  +..+....|+|+.|+++++.+.....  ...+|+.|++++|.++.  ++.+   .++
T Consensus       274 L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~--LP~l---p~~  343 (788)
T PRK15387        274 LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS--LPTL---PSG  343 (788)
T ss_pred             hhhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC--CcccccccccccCcccc--cccc---ccc
Confidence            444332 12578888888876  22222235678888887754331001  12357778888777732  3321   246


Q ss_pred             cceeeccccccccccccccccccEEEcccccccccc
Q 018344          176 LEYLALHYCMKLRSINISSPRLKELVFERCEELVEF  211 (357)
Q Consensus       176 L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~L~~~  211 (357)
                      |+.|++++ +.+..+|..+++|+.|.++++ .++.+
T Consensus       344 Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N-~L~~L  377 (788)
T PRK15387        344 LQELSVSD-NQLASLPTLPSELYKLWAYNN-RLTSL  377 (788)
T ss_pred             cceEecCC-CccCCCCCCCcccceehhhcc-ccccC
Confidence            88888854 456566666667777777765 45543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.85  E-value=2.4e-10  Score=102.53  Aligned_cols=175  Identities=16%  Similarity=0.234  Sum_probs=111.1

Q ss_pred             CccEEEeeccccCC--C--CCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----CCCCc
Q 018344           37 SIYVLDFEFCKLEP--P--RSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLL----GLNKL  107 (357)
Q Consensus        37 ~L~~L~Ls~~~~~~--p--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L  107 (357)
                      -|+.|.+.||.-..  +  ....++|++++|.+.++.. ++..+..+...|+.|++|++..|..++...+-    +|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            47788888876443  1  1335778888888888764 77777777778888888888888776654332    56788


Q ss_pred             cEEEecccCCCcce-----eEeecceeeEEEEeecC-CCc---eeeccccccccceeeccc-ccCHHHHHHHhccCCccc
Q 018344          108 KEIKLDSNRCGLER-----VYINGVNVHSVDIKVYL-EPC---EVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLE  177 (357)
Q Consensus       108 ~~L~l~~c~~~l~~-----~~~~~p~L~~L~l~~~~-~~~---~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~  177 (357)
                      +++++++|. ....     ..-.+..++.+...|.. .+.   ...-..+..+.++++..+ .++|..+..+-.++..|+
T Consensus       219 ~~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCP-QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCc-hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888886 3322     22223344445444421 110   011123445666666544 467777777777788888


Q ss_pred             eeecccccccccccc-----ccccccEEEccccccccccc
Q 018344          178 YLALHYCMKLRSINI-----SSPRLKELVFERCEELVEFE  212 (357)
Q Consensus       178 ~L~l~~~~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~  212 (357)
                      .|+.++|..+.+...     ...+|+.+.++.|.++++..
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~  337 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG  337 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence            888888877644332     26788888888887777654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.85  E-value=2e-11  Score=114.56  Aligned_cols=77  Identities=22%  Similarity=0.344  Sum_probs=54.4

Q ss_pred             EEEEEecCCcceecCcccc-cCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344           15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN   92 (357)
Q Consensus        15 ~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~   92 (357)
                      -+.|.++++..-.+|.+++ ++..|-.|+||+|.+.. |+.+..+.+|++|.|++|.+.--.+..+ ..+..|+.|++++
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~  206 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSN  206 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhccc
Confidence            4567888888888998776 47788888999988877 6678888888888888886533323321 2344455555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=7.1e-10  Score=95.51  Aligned_cols=202  Identities=15%  Similarity=0.177  Sum_probs=124.4

Q ss_pred             CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEe
Q 018344           58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIK  135 (357)
Q Consensus        58 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~  135 (357)
                      +.|++|+|++..++...+..+++.|..|+.|.+.+...-..+  .+..-.+|+.|++++|. ++.+...           
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~-----------  252 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENAL-----------  252 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHH-----------
Confidence            458899999888888888888889999988888886421111  11122578888888777 4333211           


Q ss_pred             ecCCCceeeccccccccceeecccccCHHHHHHHhcc-CCccceeeccccccc------cccccccccccEEEccccccc
Q 018344          136 VYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISE-LPFLEYLALHYCMKL------RSINISSPRLKELVFERCEEL  208 (357)
Q Consensus       136 ~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~-~~~L~~L~l~~~~~l------~~l~~~~~~L~~L~l~~c~~L  208 (357)
                            ..-+.+|+.|..|+++++..+.+.+.-++.+ -++|..|++++|..-      ..+...++++.+|++++|..+
T Consensus       253 ------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l  326 (419)
T KOG2120|consen  253 ------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML  326 (419)
T ss_pred             ------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence                  1245677777888888777655555544444 356777777766532      112222666666666666333


Q ss_pred             ccccccCCCcceEEeeeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccc
Q 018344          209 VEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELRE  288 (357)
Q Consensus       209 ~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~  288 (357)
                      +.                                             .....+-.|+.+++|++.-|+.   ++|+.+-+
T Consensus       327 ~~---------------------------------------------~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~  358 (419)
T KOG2120|consen  327 KN---------------------------------------------DCFQEFFKFNYLQHLSLSRCYD---IIPETLLE  358 (419)
T ss_pred             Cc---------------------------------------------hHHHHHHhcchheeeehhhhcC---CChHHeee
Confidence            22                                             1122344577788888877753   33443333


Q ss_pred             cCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeecCC
Q 018344          289 ILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPN  336 (357)
Q Consensus       289 ~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~~~  336 (357)
                      ..  ..|.|.+|++.++.      ....+..+.+.||||   .|+|..
T Consensus       359 l~--s~psl~yLdv~g~v------sdt~mel~~e~~~~l---kin~q~  395 (419)
T KOG2120|consen  359 LN--SKPSLVYLDVFGCV------SDTTMELLKEMLSHL---KINCQH  395 (419)
T ss_pred             ec--cCcceEEEEecccc------CchHHHHHHHhCccc---ccccee
Confidence            32  24789999999773      123567788999997   454443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.3e-10  Score=98.48  Aligned_cols=197  Identities=18%  Similarity=0.245  Sum_probs=123.8

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCccccc-CCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcC
Q 018344            6 SYAFASNVKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG   81 (357)
Q Consensus         6 ~~~~~~~v~~l~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~   81 (357)
                      ...+.+||..+.+--.....-.+.+...- -+.|++||||...+..   -.....|.+|+.|.|.++.+++.... -+..
T Consensus       154 ~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAk  232 (419)
T KOG2120|consen  154 GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAK  232 (419)
T ss_pred             HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhc
Confidence            44567888888764322111111111111 1359999999865443   12456789999999999988765444 4556


Q ss_pred             CCCccEEeeecCCCCCccCc----CCCCCccEEEecccCCCccee-----EeecceeeEEEEeecCCCc-----eeeccc
Q 018344           82 CPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEPC-----EVNVSS  147 (357)
Q Consensus        82 ~~~L~~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~~-----~~~~~~  147 (357)
                      -.+|+.|++++|.+++...+    .+|..|.+|++++|. ...+.     .-..++|..|+++|....+     ..-...
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            78899999999998776443    467889999999997 33322     1125677777777732211     122356


Q ss_pred             cccccceeeccc-ccCHHHHHHHhccCCccceeeccccccccc---ccc-ccccccEEEcccc
Q 018344          148 CKNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRS---INI-SSPRLKELVFERC  205 (357)
Q Consensus       148 ~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~---l~~-~~~~L~~L~l~~c  205 (357)
                      |++|.+|+|+++ .++++.+. .+-.++.|++|.++.|..+..   +.. ..|+|.+|++.+|
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            788888888754 45554433 445688888888888776521   111 2567777777776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.74  E-value=3.8e-08  Score=98.16  Aligned_cols=168  Identities=15%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      .++.|.  +..+....+|..   .++|++|++++|.+.. |.   ..++|++|++++|.++  .++.+   .++|+.|++
T Consensus       223 ~L~~L~--L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~~L~L  289 (788)
T PRK15387        223 HITTLV--IPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT--HLPAL---PSGLCKLWI  289 (788)
T ss_pred             CCCEEE--ccCCcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchh--hhhhc---hhhcCEEEC
Confidence            445554  556777788863   5789999999998776 43   3478899999988653  23332   245777888


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeecccc-ccccceeecccccCHHHHHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSC-KNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~-~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++|. ++.++. ..++|+.|++++|..  ..+....++|+.|.+.++.+.   .++.+ .+|+.|++++|.++.  ++. 
T Consensus       290 s~N~-Lt~LP~-~p~~L~~LdLS~N~L--~~Lp~lp~~L~~L~Ls~N~L~---~LP~lp~~Lq~LdLS~N~Ls~--LP~-  359 (788)
T PRK15387        290 FGNQ-LTSLPV-LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLT---SLPTLPSGLQELSVSDNQLAS--LPT-  359 (788)
T ss_pred             cCCc-cccccc-cccccceeECCCCcc--ccCCCCcccccccccccCccc---cccccccccceEecCCCccCC--CCC-
Confidence            7764 444432 226777888877752  111111234555555553322   11111 246666666665532  221 


Q ss_pred             hccCCccceeeccccccccccccccccccEEEcccc
Q 018344          170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c  205 (357)
                        ..++|+.|++++ +.+..+|....+|+.|+++++
T Consensus       360 --lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~N  392 (788)
T PRK15387        360 --LPSELYKLWAYN-NRLTSLPALPSGLKELIVSGN  392 (788)
T ss_pred             --CCcccceehhhc-cccccCcccccccceEEecCC
Confidence              123444455432 233334433344555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.73  E-value=5.9e-09  Score=95.02  Aligned_cols=197  Identities=18%  Similarity=0.132  Sum_probs=125.5

Q ss_pred             CCCeEEEEEecCC---cceecCcccccCCCccEEEeeccccCC-C-------CCccCCCCCceEEeeccccCH---HHHH
Q 018344           11 SNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLEP-P-------RSTVTLFSLRKLCLSFVHVDD---EVIR   76 (357)
Q Consensus        11 ~~v~~l~l~~~~~---~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-------~~~~~l~~L~~L~L~~~~~~~---~~l~   76 (357)
                      ..++++.+.-..-   ....++..+...+++++|+++++.... +       ..+..+++|+.|++++|.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3567776643321   224566666677889999998876552 1       234568899999999988743   2233


Q ss_pred             HHHcCCCCccEEeeecCCCCC----cc--CcCCC-CCccEEEecccCCCc---cee---EeecceeeEEEEeecCCCc--
Q 018344           77 DMVAGCPLIEYININNCPGLK----SL--QLLGL-NKLKEIKLDSNRCGL---ERV---YINGVNVHSVDIKVYLEPC--  141 (357)
Q Consensus        77 ~l~~~~~~L~~L~L~~c~~l~----~l--~l~~~-~~L~~L~l~~c~~~l---~~~---~~~~p~L~~L~l~~~~~~~--  141 (357)
                      .+... ++|++|++++|..-.    .+  .+..+ ++|++|++++|....   ..+   ....++|++|++++..+..  
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            33344 669999999886321    11  12234 789999999887321   111   1134578899888754321  


Q ss_pred             ----eeeccccccccceeecccccCHHH---HHHHhccCCccceeecccccccc----cccc----ccccccEEEccccc
Q 018344          142 ----EVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLR----SINI----SSPRLKELVFERCE  206 (357)
Q Consensus       142 ----~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~~L~l~~~~~l~----~l~~----~~~~L~~L~l~~c~  206 (357)
                          ...+..+++|++|+++++.+++..   +...+..+++|+.|++++|.--.    .+..    ..++|++|++++| 
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-  260 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-  260 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence                112344568999999999887643   44566788999999998764221    1111    1368999999998 


Q ss_pred             ccc
Q 018344          207 ELV  209 (357)
Q Consensus       207 ~L~  209 (357)
                      .++
T Consensus       261 ~i~  263 (319)
T cd00116         261 DIT  263 (319)
T ss_pred             CCC
Confidence            554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.72  E-value=3.1e-08  Score=99.06  Aligned_cols=175  Identities=16%  Similarity=0.139  Sum_probs=109.7

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .+++.......+|..+.  ++|+.|+|++|.+.. |..+  +++|++|++++|.++  .++..+  .++|+.|+|++|. 
T Consensus       182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~-  252 (754)
T PRK15370        182 ELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLT--SIPATL--PDTIQEMELSINR-  252 (754)
T ss_pred             EEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccc--cCChhh--hccccEEECcCCc-
Confidence            34556666778887664  579999999998776 5433  368999999999764  233222  2479999999986 


Q ss_pred             CCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccC
Q 018344           96 LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISEL  173 (357)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  173 (357)
                      +..++..-..+|+.|++++|..  ..+.. ..++|++|+++++.+.. ...+  .++|+.|++++|.++.  ++..  -.
T Consensus       253 L~~LP~~l~s~L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~--LP~~--l~  324 (754)
T PRK15370        253 ITELPERLPSALQSLDLFHNKI--SCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA--LPET--LP  324 (754)
T ss_pred             cCcCChhHhCCCCEEECcCCcc--CccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc--CCcc--cc
Confidence            4444332225799999987762  22211 13478888887754321 0111  1357888888887742  2221  13


Q ss_pred             Cccceeeccccccccccccc-cccccEEEccccccccc
Q 018344          174 PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVE  210 (357)
Q Consensus       174 ~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~  210 (357)
                      ++|+.|++++|. +..+|.. +++|+.|++++| +++.
T Consensus       325 ~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~  360 (754)
T PRK15370        325 PGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITV  360 (754)
T ss_pred             ccceeccccCCc-cccCChhhcCcccEEECCCC-CCCc
Confidence            678888886553 4445432 467888888877 4543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4e-09  Score=95.33  Aligned_cols=171  Identities=19%  Similarity=0.146  Sum_probs=122.7

Q ss_pred             cCCCccEEEeeccccCCCC---CccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCC---ccCcCCCCC
Q 018344           34 YLKSIYVLDFEFCKLEPPR---STVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLK---SLQLLGLNK  106 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~---~l~l~~~~~  106 (357)
                      ++++|+...|.++....+.   -...|++++.|+|+.|-+ ....+..++..+|+||.|+++.|...-   ......+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4678899899888765532   456899999999999988 778889999999999999999876321   111113478


Q ss_pred             ccEEEecccCCCc---ceeEeecceeeEEEEeecC-CC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeec
Q 018344          107 LKEIKLDSNRCGL---ERVYINGVNVHSVDIKVYL-EP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL  181 (357)
Q Consensus       107 L~~L~l~~c~~~l---~~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l  181 (357)
                      |+.|.+++|.+..   ..+...+|+|+.|.+.++. +- .......+..|+.|+|++|.+-+.......+.+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999998422   2234468999999998753 21 12233445669999999988755444456788999999999


Q ss_pred             cccccccccc----------cccccccEEEcccc
Q 018344          182 HYCMKLRSIN----------ISSPRLKELVFERC  205 (357)
Q Consensus       182 ~~~~~l~~l~----------~~~~~L~~L~l~~c  205 (357)
                      +.|. +.++.          ...++|+.|++...
T Consensus       279 s~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  279 SSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             cccC-cchhcCCCccchhhhcccccceeeecccC
Confidence            7553 22221          12678899988776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.66  E-value=9.9e-10  Score=87.35  Aligned_cols=154  Identities=23%  Similarity=0.212  Sum_probs=95.1

Q ss_pred             ecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc-cCcCCC
Q 018344           27 NLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS-LQLLGL  104 (357)
Q Consensus        27 ~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-l~l~~~  104 (357)
                      ++| .++.+++++.|.||++.+.. |+.+..+.+|++|++++|.+  +.++.-++++|.|+.|+++.+..... -.+.++
T Consensus        25 ~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   25 ELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             hcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence            444 56788889999999988766 66888999999999999954  45677788888899988886652111 123445


Q ss_pred             CCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccc
Q 018344          105 NKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (357)
Q Consensus       105 ~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~  184 (357)
                      |.|+.|+++.+..                 +....|  -.|-.+.-|+.|++++|.+  +.++.-++++.+|+.|.+..+
T Consensus       102 p~levldltynnl-----------------~e~~lp--gnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  102 PALEVLDLTYNNL-----------------NENSLP--GNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             chhhhhhcccccc-----------------ccccCC--cchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccC
Confidence            7777777776641                 001222  2333444466666666665  555555666666666666433


Q ss_pred             ccccccccc---cccccEEEcccc
Q 018344          185 MKLRSINIS---SPRLKELVFERC  205 (357)
Q Consensus       185 ~~l~~l~~~---~~~L~~L~l~~c  205 (357)
                      . +-++|..   ..+|++|.+.+.
T Consensus       161 d-ll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  161 D-LLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             c-hhhCcHHHHHHHHHHHHhcccc
Confidence            2 2222222   344555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.63  E-value=1.4e-09  Score=106.32  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=15.9

Q ss_pred             EecCCcceecCcccccCCCccEEEeecccc
Q 018344           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKL   48 (357)
Q Consensus        19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~   48 (357)
                      |++.+....+|.++..|.+|+.++...+.+
T Consensus       247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  247 DISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             ecchhhhhcchHHHHhcccceEecccchhH
Confidence            334444555565555566666655554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.63  E-value=2.7e-08  Score=81.62  Aligned_cols=126  Identities=22%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             cCCCccEEEeeccccCCCCCcc-CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--c-CCCCCccE
Q 018344           34 YLKSIYVLDFEFCKLEPPRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--L-LGLNKLKE  109 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l-~~~~~L~~  109 (357)
                      ++.++++|+|.++.+..-...+ .+.+|++|+|++|.++.  +.. +..++.|++|++++|. ++.+.  + ..+|+|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            4446677777777665422333 46677777777776521  121 2345667777777654 33332  1 13466666


Q ss_pred             EEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeecc
Q 018344          110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALH  182 (357)
Q Consensus       110 L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l~  182 (357)
                      |.+++|..  .       ++       ..+   ..+..+++|+.|++.+|.+++  .--...+..+|+|+.||-.
T Consensus        93 L~L~~N~I--~-------~l-------~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKI--S-------DL-------NEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS------------SC-------CCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCCcC--C-------Ch-------HHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            66666551  0       00       000   234567888899999888865  2234567889999999854

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.61  E-value=1.2e-09  Score=86.89  Aligned_cols=141  Identities=21%  Similarity=0.276  Sum_probs=102.8

Q ss_pred             EecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC
Q 018344           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK   97 (357)
Q Consensus        19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~   97 (357)
                      .++.++...+|+.+..+.+|++|+++++.+.. |..+..+++|+.|++..|.+  ..++.=++.+|.||.|++.+++.-.
T Consensus        39 tLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             hcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccccccc
Confidence            45678889999999999999999999998877 77899999999999998854  3345557889999999999976322


Q ss_pred             c-c--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCC
Q 018344           98 S-L--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELP  174 (357)
Q Consensus        98 ~-l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  174 (357)
                      . +  .+..+..|+-|.++++.+                   ..+|  .+++.+++|+.|.+..|++  -.++.-++.+.
T Consensus       117 ~~lpgnff~m~tlralyl~dndf-------------------e~lp--~dvg~lt~lqil~lrdndl--l~lpkeig~lt  173 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDF-------------------EILP--PDVGKLTNLQILSLRDNDL--LSLPKEIGDLT  173 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCc-------------------ccCC--hhhhhhcceeEEeeccCch--hhCcHHHHHHH
Confidence            1 1  111224555555555541                   1123  4667778888888887776  44566677788


Q ss_pred             ccceeecccc
Q 018344          175 FLEYLALHYC  184 (357)
Q Consensus       175 ~L~~L~l~~~  184 (357)
                      .|++|++.++
T Consensus       174 ~lrelhiqgn  183 (264)
T KOG0617|consen  174 RLRELHIQGN  183 (264)
T ss_pred             HHHHHhcccc
Confidence            8888888654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.58  E-value=9.4e-08  Score=95.67  Aligned_cols=175  Identities=13%  Similarity=0.155  Sum_probs=114.2

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l   96 (357)
                      |+++++....+|..++  .+|+.|++++|.+.. |..+  .++|+.|+|++|.+.  .++..+  ..+|+.|++++|. +
T Consensus       204 L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~--~LP~~l--~s~L~~L~Ls~N~-L  274 (754)
T PRK15370        204 LILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT--ELPERL--PSALQSLDLFHNK-I  274 (754)
T ss_pred             EEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC--cCChhH--hCCCCEEECcCCc-c
Confidence            4556777888998765  589999999998776 4332  358999999999774  223222  2479999998764 5


Q ss_pred             CccCcCCCCCccEEEecccCCCcceeEee-cceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344           97 KSLQLLGLNKLKEIKLDSNRCGLERVYIN-GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP  174 (357)
Q Consensus        97 ~~l~l~~~~~L~~L~l~~c~~~l~~~~~~-~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  174 (357)
                      +.++-.-.++|+.|++++|.+  ..+... .++|+.|+++++.+.. ...  -.++|+.|++++|.++.  ++..+  .+
T Consensus       275 ~~LP~~l~~sL~~L~Ls~N~L--t~LP~~lp~sL~~L~Ls~N~Lt~LP~~--l~~sL~~L~Ls~N~Lt~--LP~~l--~~  346 (754)
T PRK15370        275 SCLPENLPEELRYLSVYDNSI--RTLPAHLPSGITHLNVQSNSLTALPET--LPPGLKTLEAGENALTS--LPASL--PP  346 (754)
T ss_pred             CccccccCCCCcEEECCCCcc--ccCcccchhhHHHHHhcCCccccCCcc--ccccceeccccCCcccc--CChhh--cC
Confidence            554432235899999998863  222111 2367777777654321 011  22578888888887743  33222  36


Q ss_pred             ccceeeccccccccccccc-cccccEEEcccccccccc
Q 018344          175 FLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF  211 (357)
Q Consensus       175 ~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~  211 (357)
                      +|+.|++++| .+..+|.. +++|+.|++++| +++.+
T Consensus       347 sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N-~Lt~L  382 (754)
T PRK15370        347 ELQVLDVSKN-QITVLPETLPPTITTLDVSRN-ALTNL  382 (754)
T ss_pred             cccEEECCCC-CCCcCChhhcCCcCEEECCCC-cCCCC
Confidence            8999999765 34445532 567889999888 56654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.58  E-value=7.9e-09  Score=101.30  Aligned_cols=185  Identities=19%  Similarity=0.243  Sum_probs=111.9

Q ss_pred             HhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344            9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus         9 ~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ++++|+-..+|++.+....+|..+..+..|+.|+++++.+.. |....+..+|++++|.+|..  ..++.-+..+.+|++
T Consensus        41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQY  118 (1081)
T ss_pred             hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccc
Confidence            455777667788887777888877777788888888876655 55667778888888888743  334555667778888


Q ss_pred             EeeecCCCCC-ccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCC--ceeeccccccccc-eeecccccCH
Q 018344           88 ININNCPGLK-SLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTH-LRLDGLSITD  163 (357)
Q Consensus        88 L~L~~c~~l~-~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~-L~L~~~~i~~  163 (357)
                      |+++++.... .+.+..+..+..+..++|. ....+...  .++.+++......  +..+...   +++ ++|.+|.+. 
T Consensus       119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~-~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~---l~~~ldLr~N~~~-  191 (1081)
T KOG0618|consen  119 LDLSFNHFGPIPLVIEVLTAEEELAASNNE-KIQRLGQT--SIKKLDLRLNVLGGSFLIDIYN---LTHQLDLRYNEME-  191 (1081)
T ss_pred             cccchhccCCCchhHHhhhHHHHHhhhcch-hhhhhccc--cchhhhhhhhhcccchhcchhh---hheeeecccchhh-
Confidence            8888765322 1222223333344444442 11111110  1333333322111  1122333   444 888888773 


Q ss_pred             HHHHHHhccCCccceeeccccccccccccccccccEEEccccc
Q 018344          164 KWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCE  206 (357)
Q Consensus       164 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~  206 (357)
                         ...+.++++|+.+.. .++.+..+....++++.|..++|+
T Consensus       192 ---~~dls~~~~l~~l~c-~rn~ls~l~~~g~~l~~L~a~~n~  230 (1081)
T KOG0618|consen  192 ---VLDLSNLANLEVLHC-ERNQLSELEISGPSLTALYADHNP  230 (1081)
T ss_pred             ---hhhhhhccchhhhhh-hhcccceEEecCcchheeeeccCc
Confidence               223567888888877 456666777778888999888884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.2e-08  Score=90.57  Aligned_cols=85  Identities=19%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             cccCCCccEEEeeccccCCCC---CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCC
Q 018344           32 VFYLKSIYVLDFEFCKLEPPR---STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNK  106 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~p~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~  106 (357)
                      ...+++|+.|+|+.|.+..|.   .-..++.|++|.|+.|.++...+.++...+|+|+.|.+.+|..+..-.  .--+..
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            345788999999998776532   334689999999999999988899999999999999999885322211  112357


Q ss_pred             ccEEEecccC
Q 018344          107 LKEIKLDSNR  116 (357)
Q Consensus       107 L~~L~l~~c~  116 (357)
                      |++|+++++.
T Consensus       248 L~~LdLs~N~  257 (505)
T KOG3207|consen  248 LQELDLSNNN  257 (505)
T ss_pred             HhhccccCCc
Confidence            8889998887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.46  E-value=2.2e-08  Score=90.13  Aligned_cols=136  Identities=23%  Similarity=0.356  Sum_probs=83.3

Q ss_pred             CCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----CCCCccEEEecccCCCcceeEeecceeeEE
Q 018344           58 FSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLL----GLNKLKEIKLDSNRCGLERVYINGVNVHSV  132 (357)
Q Consensus        58 ~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L  132 (357)
                      .-||.|.++++.- .+..+.....+||++|+|++.+|..++.-...    .|++|+++++..|. .++.....       
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk-------  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLK-------  209 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHH-------
Confidence            5789999999864 77888999999999999999999977654332    35889999888877 33322110       


Q ss_pred             EEeecCCCceeeccccccccceeeccc-ccCHHHHHHHhccCCccceeeccccccccc--c---ccccccccEEEccccc
Q 018344          133 DIKVYLEPCEVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRS--I---NISSPRLKELVFERCE  206 (357)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~--l---~~~~~~L~~L~l~~c~  206 (357)
                                -...+|++|++++++++ .+++..+.....++..++.+...+|...+.  +   .....-+.++++..|.
T Consensus       210 ----------~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~  279 (483)
T KOG4341|consen  210 ----------YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN  279 (483)
T ss_pred             ----------HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc
Confidence                      01235566666666554 244444555555565566665555544311  1   1113344555555665


Q ss_pred             ccccc
Q 018344          207 ELVEF  211 (357)
Q Consensus       207 ~L~~~  211 (357)
                      .+++.
T Consensus       280 ~lTD~  284 (483)
T KOG4341|consen  280 QLTDE  284 (483)
T ss_pred             cccch
Confidence            55543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.43  E-value=2.7e-09  Score=95.48  Aligned_cols=182  Identities=22%  Similarity=0.211  Sum_probs=111.9

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .++..++...++|+.++.+..++.|+.+.+.... |..++.+++|+.++.+.+.+.  .++.-++.|..|+.|+-.++..
T Consensus        72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen   72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhcccccc
Confidence            4566677788888888888888888888887666 667788888888888877542  1223344455556555554432


Q ss_pred             ----------------------CCccCc--CCCCCccEEEecccCCCcceeEe---ecceeeEEEEeecCCCceeecccc
Q 018344           96 ----------------------LKSLQL--LGLNKLKEIKLDSNRCGLERVYI---NGVNVHSVDIKVYLEPCEVNVSSC  148 (357)
Q Consensus        96 ----------------------l~~l~l--~~~~~L~~L~l~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~  148 (357)
                                            ++.+.-  -.+..|++|+...+-  ++.+.-   ...+|+.|.+..+.+.+-++|++|
T Consensus       150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc  227 (565)
T KOG0472|consen  150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL--LETLPPELGGLESLELLYLRRNKIRFLPEFPGC  227 (565)
T ss_pred             ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh--hhcCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence                                  111100  012345555544332  111111   122344444544544444588899


Q ss_pred             ccccceeecccccCHHHHHH-HhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344          149 KNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (357)
Q Consensus       149 ~~L~~L~L~~~~i~~~~~~~-l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c  205 (357)
                      ..|+++++..|.+  +.++. ..++++++..||+ ..++++.+|..   ..+|.+|++++.
T Consensus       228 s~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDL-RdNklke~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  228 SLLKELHVGENQI--EMLPAEHLKHLNSLLVLDL-RDNKLKEVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             HHHHHHHhcccHH--HhhHHHHhcccccceeeec-cccccccCchHHHHhhhhhhhcccCC
Confidence            9999999998888  66664 4458899999998 45566666654   456677777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.42  E-value=3.3e-08  Score=88.46  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      +|.-..+|.+.....++|..+-  .+-+.++|..|.+..  |..|..+++||+|+|++|.++.-. +..+.+++.|.+|.
T Consensus        45 ~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lv  121 (498)
T KOG4237|consen   45 DVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLV  121 (498)
T ss_pred             CCCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHH
Confidence            3445667777777777776542  356777887776554  568899999999999999774322 44566778888888


Q ss_pred             eecCCCCCccCc---CCCCCccEEEecccC--CCcceeEeecceeeEEEEeecCCC--ceeeccccccccceeecccc
Q 018344           90 INNCPGLKSLQL---LGLNKLKEIKLDSNR--CGLERVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        90 L~~c~~l~~l~l---~~~~~L~~L~l~~c~--~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~  160 (357)
                      +-+++.++++.-   .++.+|+.|.+.-|+  +..++..-..|++.-|.+..+...  ....+..+.+++++++.-+.
T Consensus       122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            877666776643   344556666665444  123333344666666666553322  13456667778888886554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.14  E-value=1e-06  Score=77.90  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=19.0

Q ss_pred             CCCCCceEEeeccccCH---HHHHHHHcCCCCccEEeeecCC
Q 018344           56 TLFSLRKLCLSFVHVDD---EVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~---~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .+|.|++|+||.|.+..   ..+..++++|..|++|.|.+|.
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G  131 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG  131 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence            34455555555555422   2333444455555555555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.12  E-value=4.5e-07  Score=78.67  Aligned_cols=128  Identities=20%  Similarity=0.117  Sum_probs=87.8

Q ss_pred             CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEE
Q 018344           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDI  134 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l  134 (357)
                      .+..|++++|++|.+  ..+..-+.-.|.++.|++++|.....-++..+++|+.|++++|.. ........+-++++|.+
T Consensus       282 TWq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccch--hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            467899999999965  234444556799999999998765555555678999999998862 12222334557888888


Q ss_pred             eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      .++.+..-..+..+-+|..|++.+|+|..-.-...++++|.||.+.+.+++
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            775443112455566788889999888442223457889999998886554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.10  E-value=1.8e-08  Score=90.34  Aligned_cols=39  Identities=8%  Similarity=0.028  Sum_probs=24.9

Q ss_pred             CCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeecCCccee
Q 018344          293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFY  340 (357)
Q Consensus       293 ~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~~~~~~~  340 (357)
                      .+.+|+.|++..+.       .+.++-.+.+|.+|.+|.+  .+++|+
T Consensus       503 nm~nL~tLDL~nNd-------lq~IPp~LgnmtnL~hLeL--~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNND-------LQQIPPILGNMTNLRHLEL--DGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCc-------hhhCChhhccccceeEEEe--cCCccC
Confidence            35666777775431       3345666778888888888  445577

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.07  E-value=4.4e-06  Score=68.62  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             EEEEEecCCcceecCcccc-cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        15 ~l~l~~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .-.|++.++....+. .+. .+.+|+.|+|++|.+..-..+..++.|++|++++|.++.-. +.+...+|+|++|++++|
T Consensus        21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred             ccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence            334455565555554 454 47899999999999877447888999999999999884210 223356899999999987


Q ss_pred             CC--CCcc-CcCCCCCccEEEecccC
Q 018344           94 PG--LKSL-QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        94 ~~--l~~l-~l~~~~~L~~L~l~~c~  116 (357)
                      ..  +..+ .+..+++|+.|++.+|.
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCc
Confidence            63  2222 34456889999998886

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.02  E-value=1.4e-06  Score=77.07  Aligned_cols=186  Identities=19%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             hHHHHHHhCCCeEEEEEecCC----cceecCc-------ccccCCCccEEEeeccccCC--CC----CccCCCCCceEEe
Q 018344            3 RCLSYAFASNVKELKLDVGCC----RIYNLPQ-------IVFYLKSIYVLDFEFCKLEP--PR----STVTLFSLRKLCL   65 (357)
Q Consensus         3 ~~i~~~~~~~v~~l~l~~~~~----~~~~lP~-------~i~~~~~L~~L~Ls~~~~~~--p~----~~~~l~~L~~L~L   65 (357)
                      +|+.-+.++.-+--.+++++.    ...++|+       .+..|..|++|+||+|-+.+  +.    .+.++..|++|.|
T Consensus        48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L  127 (382)
T KOG1909|consen   48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL  127 (382)
T ss_pred             HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence            577777665443334556642    2234444       34567799999999998765  32    2457899999999


Q ss_pred             eccccCHHHHHHH------------HcCCCCccEEeeecCCCCCcc-------CcCCCCCccEEEecccCCCcceeEeec
Q 018344           66 SFVHVDDEVIRDM------------VAGCPLIEYININNCPGLKSL-------QLLGLNKLKEIKLDSNRCGLERVYING  126 (357)
Q Consensus        66 ~~~~~~~~~l~~l------------~~~~~~L~~L~L~~c~~l~~l-------~l~~~~~L~~L~l~~c~~~l~~~~~~~  126 (357)
                      .+|.+....-..+            +..-+.|+++...+|.. ...       .+..++.|+.+.+..+......+..  
T Consensus       128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a--  204 (382)
T KOG1909|consen  128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA--  204 (382)
T ss_pred             hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHH--
Confidence            9998854433322            22345566665555431 110       0112245555555555411111100  


Q ss_pred             ceeeEEEEeecCCCceeeccccccccceeecccccCH---HHHHHHhccCCccceeeccccccc--------cccccccc
Q 018344          127 VNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKL--------RSINISSP  195 (357)
Q Consensus       127 p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~l~~~~~l--------~~l~~~~~  195 (357)
                                    ....+..|++|+.|+|..|.++.   ..+...++.+|+|+.|.+++|..-        ..+.-..+
T Consensus       205 --------------l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p  270 (382)
T KOG1909|consen  205 --------------LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP  270 (382)
T ss_pred             --------------HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence                          01234456666666666665543   233445556666666666655422        11111245


Q ss_pred             cccEEEcccc
Q 018344          196 RLKELVFERC  205 (357)
Q Consensus       196 ~L~~L~l~~c  205 (357)
                      +|+.+.+.+|
T Consensus       271 ~L~vl~l~gN  280 (382)
T KOG1909|consen  271 SLEVLELAGN  280 (382)
T ss_pred             CCceeccCcc
Confidence            5666666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=2.7e-06  Score=84.63  Aligned_cols=147  Identities=19%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             CCccEEEeeccccCC---CCCc-cCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEE
Q 018344           36 KSIYVLDFEFCKLEP---PRST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEI  110 (357)
Q Consensus        36 ~~L~~L~Ls~~~~~~---p~~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L  110 (357)
                      .+|++|+++|.....   |..+ .-||+|++|.+++..+..+.+..+..++|+|+.||+++++ ++.+ .++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence            479999998854322   2222 3589999999999988556688888999999999999976 3333 44555677777


Q ss_pred             EecccCCCc-cee--EeecceeeEEEEeecCC---C-----ceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344          111 KLDSNRCGL-ERV--YINGVNVHSVDIKVYLE---P-----CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL  179 (357)
Q Consensus       111 ~l~~c~~~l-~~~--~~~~p~L~~L~l~~~~~---~-----~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  179 (357)
                      .+.+=.+.. ..+  -..+.+|+.|+++....   +     .-.....+|+|+.|+.+++.++++.+..++..-|+|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            665433111 111  22466788888876211   1     001122478899999999999888888888888888887


Q ss_pred             eccc
Q 018344          180 ALHY  183 (357)
Q Consensus       180 ~l~~  183 (357)
                      ..-.
T Consensus       281 ~~~~  284 (699)
T KOG3665|consen  281 AALD  284 (699)
T ss_pred             hhhh
Confidence            7543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.94  E-value=1.9e-06  Score=87.81  Aligned_cols=199  Identities=19%  Similarity=0.243  Sum_probs=108.8

Q ss_pred             CCCeEE-EEEecC-CcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKEL-KLDVGC-CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l-~l~~~~-~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ...+.| .||++. ....++|.+++++-+|++|+|++..... |.++.+|..|.+|++..+..-. .++.+...+++|++
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRV  646 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccE
Confidence            334444 356663 3556788888888888888888877665 7778888888888888764311 12444555788888


Q ss_pred             EeeecCC-CCCcc---CcCCCCCccEEEecccCC-CcceeEeecceee----EEEEeecCCC-ceeeccccccccceeec
Q 018344           88 ININNCP-GLKSL---QLLGLNKLKEIKLDSNRC-GLERVYINGVNVH----SVDIKVYLEP-CEVNVSSCKNLTHLRLD  157 (357)
Q Consensus        88 L~L~~c~-~l~~l---~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~----~L~l~~~~~~-~~~~~~~~~~L~~L~L~  157 (357)
                      |.+..-. .....   .+..+.+|+.++...+.. .+.+. ...+.|.    .+...+.... .......+.+|+.|.+.
T Consensus       647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~  725 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL  725 (889)
T ss_pred             EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence            8886543 11111   122334555555543331 00110 1111111    1111111111 12345567778888888


Q ss_pred             ccccCHHHHH---H-Hhc-cCCccceeeccccccccccc--cccccccEEEcccccccccc
Q 018344          158 GLSITDKWLY---N-QIS-ELPFLEYLALHYCMKLRSIN--ISSPRLKELVFERCEELVEF  211 (357)
Q Consensus       158 ~~~i~~~~~~---~-l~~-~~~~L~~L~l~~~~~l~~l~--~~~~~L~~L~l~~c~~L~~~  211 (357)
                      ++.+.+..+.   . ... .++++..+.+.+|.....+.  ...++|+.|.+.+|+.++++
T Consensus       726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             cCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence            7776542221   0 011 25566666666666665544  33788888888888766653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.89  E-value=2.7e-06  Score=73.89  Aligned_cols=119  Identities=21%  Similarity=0.277  Sum_probs=68.1

Q ss_pred             CCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCc--CCCCCccEEEe
Q 018344           36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL--LGLNKLKEIKL  112 (357)
Q Consensus        36 ~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l--~~~~~L~~L~l  112 (357)
                      +.|+.++||+|.+.. .....-.|.++.|++++|.+.  .+.. +..+++|+.|+|++|. +..+.-  ..+.++++|.+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence            457777777766544 223344577777777777552  1222 4556777777777754 222110  12246666666


Q ss_pred             cccCC----CcceeEeecceeeEEEEeecCCCc---eeeccccccccceeecccccC
Q 018344          113 DSNRC----GLERVYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus       113 ~~c~~----~l~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      ++|..    ++..    +=+|+.|++.++.+.-   -..++++|.|+++.|.+|.+.
T Consensus       360 a~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            66541    1111    1256666666643321   135678899999999998774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.83  E-value=3.1e-05  Score=51.90  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             ecCCcceecCcccc-cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc
Q 018344           20 VGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH   69 (357)
Q Consensus        20 ~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~   69 (357)
                      ++.+....+|...+ .+++|++|++++|.+..  |..+.++++|++|++++|.
T Consensus         8 l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    8 LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455556665433 36666666666665544  3455666666666666653

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=8.3e-06  Score=70.85  Aligned_cols=178  Identities=15%  Similarity=0.052  Sum_probs=112.7

Q ss_pred             CCCeEEEEEecCC-cceecCcccccCCCccEEEeeccccCCCC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCC-RIYNLPQIVFYLKSIYVLDFEFCKLEPPR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      .+|+++++..... ...++-..+.+++.|+.|+|+.|.+.++-  ....+.+|++|.|.+..+......+....+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            3677777643321 12233344456788999999999887632  12456799999999998888888888899999999


Q ss_pred             EeeecCCCCC----ccCcCCC-CCccEEEecccCC----CcceeEeecceeeEEEEeecCCC---ceeecccccccccee
Q 018344           88 ININNCPGLK----SLQLLGL-NKLKEIKLDSNRC----GLERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLR  155 (357)
Q Consensus        88 L~L~~c~~l~----~l~l~~~-~~L~~L~l~~c~~----~l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~  155 (357)
                      |+++.|..-+    .-..... +.+++|+...|..    ....+.-..|++.++-+..+.+.   ....+..++.+--|.
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            9998875311    1111111 4677777777752    11111223677776666553221   112333455566778


Q ss_pred             ecccccCHHHHHHHhccCCccceeecccccccc
Q 018344          156 LDGLSITDKWLYNQISELPFLEYLALHYCMKLR  188 (357)
Q Consensus       156 L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~  188 (357)
                      |+.+++.+-+-.+.+.++|.|..|.++..+...
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            888888654445667889999999987665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.79  E-value=9.8e-07  Score=84.95  Aligned_cols=155  Identities=19%  Similarity=0.211  Sum_probs=91.7

Q ss_pred             CcccccCCCccEEEeeccccCCCCCcc---------------------------------CCCCCceEEeeccccCHHHH
Q 018344           29 PQIVFYLKSIYVLDFEFCKLEPPRSTV---------------------------------TLFSLRKLCLSFVHVDDEVI   75 (357)
Q Consensus        29 P~~i~~~~~L~~L~Ls~~~~~~p~~~~---------------------------------~l~~L~~L~L~~~~~~~~~l   75 (357)
                      |-.|+.+++|++|.|.+|.+....++.                                 .+-.|.+.+.++|.+  ..+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhH
Confidence            777888888888888887654421111                                 122334444444432  222


Q ss_pred             HHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccce
Q 018344           76 RDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL  154 (357)
Q Consensus        76 ~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L  154 (357)
                      ...+.-+|.||.|+|++|..-+.-.+..|++|++||++.|+. .++.+....-.|+.|.+.++....-.++.++.+|+.|
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L  259 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL  259 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence            333445677888888887643333455668888898888763 3334433333577777777543322355677778888


Q ss_pred             eecccccCHHHHHHHhccCCccceeeccccc
Q 018344          155 RLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       155 ~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      ++++|-+.+-.--..++.+..|..|.+.+++
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            8888776552222334555667777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.77  E-value=1.7e-05  Score=74.72  Aligned_cols=146  Identities=23%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             cccCCCccEEEeeccccCC-CCCccCCC-CCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcC--CCCCc
Q 018344           32 VFYLKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL--GLNKL  107 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~-p~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~--~~~~L  107 (357)
                      +...+.++.|++.++.... +.....+. +|+.|+++.+.+.  .++.-+..+++|+.|++++|. +..+.-.  ..+.|
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence            3334456666666655444 33333442 6666666666432  222334556666666666654 2222211  33556


Q ss_pred             cEEEecccCCCcceeEeecc-eeeEEEEeec-CCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecc
Q 018344          108 KEIKLDSNRCGLERVYINGV-NVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH  182 (357)
Q Consensus       108 ~~L~l~~c~~~l~~~~~~~p-~L~~L~l~~~-~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~  182 (357)
                      +.|+++++........+..+ .|+++.+.+. .......+..+.++..+.+.++.+.+  +...++.+++++.|+++
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLS  263 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceeccc
Confidence            66666655411101111122 2555555443 11111233444445555555554421  13344555556666663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.75  E-value=1.1e-05  Score=54.06  Aligned_cols=58  Identities=26%  Similarity=0.305  Sum_probs=42.5

Q ss_pred             CCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           36 KSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        36 ~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      ++|++|++++|.+.. | ..+.++++|++|++++|.+..- -+..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            368899999987766 3 4778889999999998876321 12346678888888888764

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.75  E-value=1.1e-05  Score=72.58  Aligned_cols=55  Identities=22%  Similarity=0.228  Sum_probs=44.2

Q ss_pred             EEEecCCcceecCccccc-CCCccEEEeeccccCC--CCCccCCCCCceEEeec-cccC
Q 018344           17 KLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSF-VHVD   71 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~-~~~~   71 (357)
                      .+++..+.+..+|+..|+ +++|++|+||.|.+..  |..|.++++|.+|.+.+ |.++
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            455567788999988775 9999999999987654  77899999999988877 6553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.69  E-value=2e-05  Score=74.12  Aligned_cols=164  Identities=21%  Similarity=0.256  Sum_probs=113.7

Q ss_pred             EEecCCcceecCcccccCC-CccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~-~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      +++..+...++|......+ +|+.|+++++.+.. |.....+++|+.|++++|.+  ..++...+..++|+.|+++++. 
T Consensus       121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~L~~L~ls~N~-  197 (394)
T COG4886         121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNK-  197 (394)
T ss_pred             EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhhhhhhhhhheeccCCc-
Confidence            4556677889999888885 99999999998876 56789999999999999965  3345555578999999999976 


Q ss_pred             CCccCcC--CCCCccEEEecccC-CCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhc
Q 018344           96 LKSLQLL--GLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQIS  171 (357)
Q Consensus        96 l~~l~l~--~~~~L~~L~l~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  171 (357)
                      +..++..  ....|+++.++++. .......-..+++..+.+.+..... ....+.+++++.|++.++.+++  +.. +.
T Consensus       198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~--i~~-~~  274 (394)
T COG4886         198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS--ISS-LG  274 (394)
T ss_pred             cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc--ccc-cc
Confidence            4444432  33458899998884 1111112224445545443322210 1355677889999999998854  222 77


Q ss_pred             cCCccceeeccccccc
Q 018344          172 ELPFLEYLALHYCMKL  187 (357)
Q Consensus       172 ~~~~L~~L~l~~~~~l  187 (357)
                      ...+++.|++++....
T Consensus       275 ~~~~l~~L~~s~n~~~  290 (394)
T COG4886         275 SLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccCccCEEeccCcccc
Confidence            8889999998765443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.63  E-value=9.9e-06  Score=78.06  Aligned_cols=85  Identities=25%  Similarity=0.349  Sum_probs=57.4

Q ss_pred             cccCCCccEEEeecc-ccCC--C----CCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCccEEeeecCCCCCccCcC-
Q 018344           32 VFYLKSIYVLDFEFC-KLEP--P----RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-  102 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~-~~~~--p----~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~-  102 (357)
                      ...+..|+.|++++| ....  +    .....+++|+.|+++++. +++..+..+...|++|++|.+.+|..++...+. 
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            345778888888763 2211  1    133456888888888887 577777777777888888887777765443322 


Q ss_pred             ---CCCCccEEEecccC
Q 018344          103 ---GLNKLKEIKLDSNR  116 (357)
Q Consensus       103 ---~~~~L~~L~l~~c~  116 (357)
                         ++++|++|++++|.
T Consensus       290 i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHhcCcccEEeeecCc
Confidence               45778888888877

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.47  E-value=0.00016  Score=66.96  Aligned_cols=155  Identities=15%  Similarity=0.207  Sum_probs=80.3

Q ss_pred             cCCCccEEEeeccccCC-CCCccCC-CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344           34 YLKSIYVLDFEFCKLEP-PRSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK  111 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~-p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~  111 (357)
                      .|.++++|++++|.+.. |    .+ ++|++|.+++|.- ...++..+  .++|++|++++|..+..++    ++|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccccc----cccceEE
Confidence            46788888888886655 4    23 3688888887632 11122212  2478888888886665432    4677787


Q ss_pred             ecccCCCcceeEeecceeeEEEEeecCCCceeecc-cc-ccccceeecccccCHHHHHHHhccC-Cccceeeccccc--c
Q 018344          112 LDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVS-SC-KNLTHLRLDGLSITDKWLYNQISEL-PFLEYLALHYCM--K  186 (357)
Q Consensus       112 l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~L~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~--~  186 (357)
                      +..+.  ...+....++|+.|.+.+.......... .+ ++|+.|.+.++....  ++   ..+ ++|+.|+++.+.  .
T Consensus       119 L~~n~--~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~--LP---~~LP~SLk~L~ls~n~~~s  191 (426)
T PRK15386        119 IKGSA--TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII--LP---EKLPESLQSITLHIEQKTT  191 (426)
T ss_pred             eCCCC--CcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc--Cc---ccccccCcEEEeccccccc
Confidence            76433  2222222346666666431100000011 12 467888887665421  11   112 367777775432  1


Q ss_pred             cccc-ccccccccEEEcccccc
Q 018344          187 LRSI-NISSPRLKELVFERCEE  207 (357)
Q Consensus       187 l~~l-~~~~~~L~~L~l~~c~~  207 (357)
                      +... ...++++ .|.+.+|-.
T Consensus       192 LeI~~~sLP~nl-~L~f~n~lk  212 (426)
T PRK15386        192 WNISFEGFPDGL-DIDLQNSVL  212 (426)
T ss_pred             ccCccccccccc-Eechhhhcc
Confidence            1111 1113455 666666633

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.46  E-value=3e-05  Score=74.69  Aligned_cols=101  Identities=13%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             CCCccEEEeeccccCCC----CCccCCCCCceEEeecc-c-c--CHHHHHHHHcCCCCccEEeeecCCCCCccCcC----
Q 018344           35 LKSIYVLDFEFCKLEPP----RSTVTLFSLRKLCLSFV-H-V--DDEVIRDMVAGCPLIEYININNCPGLKSLQLL----  102 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~p----~~~~~l~~L~~L~L~~~-~-~--~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~----  102 (357)
                      +++|+.|.+.+|.....    .....+++|+.|+++++ . .  .......+...|++|+.|++++|..++...+.    
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666555532221    12344566666666541 1 1  11122234445566666666655543332221    


Q ss_pred             CCCCccEEEecccCCCcc-----eeEeecceeeEEEEee
Q 018344          103 GLNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKV  136 (357)
Q Consensus       103 ~~~~L~~L~l~~c~~~l~-----~~~~~~p~L~~L~l~~  136 (357)
                      .|++|++|.+..|. .+.     .+.-.+|+|++|++++
T Consensus       267 ~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  267 RCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             hCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeec
Confidence            14556666655554 221     1222355566666554

>PLN03150 hypothetical protein; Provisional

Probab=97.39  E-value=0.00029  Score=70.14  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             ccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEec
Q 018344           38 IYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLD  113 (357)
Q Consensus        38 L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~  113 (357)
                      ++.|+|+++.+..  |..+.++++|+.|+|++|.+... ++..++.+++|+.|+|++|..-..+  .+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4445555554433  33444555555555555544221 2333445555555555554322111  12334455555555


Q ss_pred             ccC
Q 018344          114 SNR  116 (357)
Q Consensus       114 ~c~  116 (357)
                      +|.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.31  E-value=9.6e-06  Score=76.27  Aligned_cols=94  Identities=22%  Similarity=0.258  Sum_probs=56.7

Q ss_pred             EecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC
Q 018344           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK   97 (357)
Q Consensus        19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~   97 (357)
                      |++.+...++|..+..+..|+.+.|+.+.+.. |..+.++..|.+|+|+.|.++  .++.-+..|| |+.|-++++. ++
T Consensus        81 DlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNk-l~  156 (722)
T KOG0532|consen   81 DLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNK-LT  156 (722)
T ss_pred             hccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCc-cc
Confidence            44455666777766666677777776655444 556677777777777777442  2333344555 6777776654 33


Q ss_pred             cc--CcCCCCCccEEEecccC
Q 018344           98 SL--QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        98 ~l--~l~~~~~L~~L~l~~c~  116 (357)
                      .+  .+...++|..|+.+.|.
T Consensus       157 ~lp~~ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNE  177 (722)
T ss_pred             cCCcccccchhHHHhhhhhhh
Confidence            32  33334667777777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.19  E-value=0.00028  Score=43.69  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=15.5

Q ss_pred             CccEEEeeccccCC-CCCccCCCCCceEEeecccc
Q 018344           37 SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (357)
Q Consensus        37 ~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~   70 (357)
                      +|++|++++|.+.. |+.+.+|++|++|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45555555554444 32344555555555555543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.18  E-value=0.00031  Score=70.18  Aligned_cols=123  Identities=16%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             CCCccEEeeecCCCCCccC---cC-CCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccccce
Q 018344           82 CPLIEYININNCPGLKSLQ---LL-GLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL  154 (357)
Q Consensus        82 ~~~L~~L~L~~c~~l~~l~---l~-~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L  154 (357)
                      -.+|++|++++......-+   ++ -+|+|++|.+.+-.+.   ........|+|.+|+++|+.+..-.+.+++++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            3578888887743322111   11 2488888888764422   223345678888888888655422356677888888


Q ss_pred             eecccccCH-HHHHHHhccCCccceeecccccccccc---------ccccccccEEEcccc
Q 018344          155 RLDGLSITD-KWLYNQISELPFLEYLALHYCMKLRSI---------NISSPRLKELVFERC  205 (357)
Q Consensus       155 ~L~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~l~~l---------~~~~~~L~~L~l~~c  205 (357)
                      .+.+-.+.. ..+.. +-++.+|+.||+|........         ....|.|+.|+.++-
T Consensus       201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            888877754 33344 345889999998854433111         112567777776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.00031  Score=61.35  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             ccccCCCccEEEeeccccCCCC---C-ccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCC---CccCcC
Q 018344           31 IVFYLKSIYVLDFEFCKLEPPR---S-TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGL---KSLQLL  102 (357)
Q Consensus        31 ~i~~~~~L~~L~Ls~~~~~~p~---~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l---~~l~l~  102 (357)
                      +++....+..|.+.+|.+....   . -...+.++.++|.+|.+ ..+.+..++.++|.|+.|+++.|..-   ..++. 
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-  118 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-  118 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-
Confidence            3444445556677777665422   1 23578999999999998 66778888899999999999887632   22221 


Q ss_pred             CCCCccEEEeccc
Q 018344          103 GLNKLKEIKLDSN  115 (357)
Q Consensus       103 ~~~~L~~L~l~~c  115 (357)
                      -..+|+.|.+.+.
T Consensus       119 p~~nl~~lVLNgT  131 (418)
T KOG2982|consen  119 PLKNLRVLVLNGT  131 (418)
T ss_pred             cccceEEEEEcCC
Confidence            1135555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.08  E-value=0.00013  Score=74.76  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             eecCcccccCCCccEEEeeccc--cCC-CC-CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344           26 YNLPQIVFYLKSIYVLDFEFCK--LEP-PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-  100 (357)
Q Consensus        26 ~~lP~~i~~~~~L~~L~Ls~~~--~~~-p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-  100 (357)
                      ..++... .+++|+.|-+.++.  +.. +. .|..+|.|++|+|++|. ....+|..++.+-+|++|+++++. +..++ 
T Consensus       536 ~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~  612 (889)
T KOG4658|consen  536 EHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG-ISHLPS  612 (889)
T ss_pred             hhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC-ccccch
Confidence            3444332 34578888887764  322 22 36678888888888763 344567778888888888888754 44332 


Q ss_pred             -cCCCCCccEEEecccCCCccee---EeecceeeEEEEeec
Q 018344          101 -LLGLNKLKEIKLDSNRCGLERV---YINGVNVHSVDIKVY  137 (357)
Q Consensus       101 -l~~~~~L~~L~l~~c~~~l~~~---~~~~p~L~~L~l~~~  137 (357)
                       +.++..|.+|++..+. ....+   ....++|++|.+...
T Consensus       613 ~l~~Lk~L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTG-RLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHHHHHhhheecccccc-ccccccchhhhcccccEEEeecc
Confidence             2344667777777665 22222   223567777777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.94  E-value=0.0015  Score=60.56  Aligned_cols=134  Identities=16%  Similarity=0.209  Sum_probs=67.9

Q ss_pred             CCCCCceEEeeccccCHHHHHHHHcCCC-CccEEeeecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCP-LIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI  134 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~-~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l  134 (357)
                      .++++++|++++|.+.  .++    .+| +|++|.+++|..++.++-.-.++|++|.+++|. .+..+   .++|++|.+
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEe
Confidence            4677777777777432  222    223 477777777776655442112567777777775 33322   235666666


Q ss_pred             eecCCCceeecccc-ccccceeeccccc-CHHHHHHHhccC-CccceeeccccccccccccccccccEEEcccc
Q 018344          135 KVYLEPCEVNVSSC-KNLTHLRLDGLSI-TDKWLYNQISEL-PFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (357)
Q Consensus       135 ~~~~~~~~~~~~~~-~~L~~L~L~~~~i-~~~~~~~l~~~~-~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c  205 (357)
                      .+....   .++.+ ++|+.|.+.+... .....+   ..+ ++|+.|++++|..+......+.+|+.|.++.+
T Consensus       120 ~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATD---SIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCCCc---ccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            543221   12223 2466666643221 000001   112 46777777766654321223456777776553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00054  Score=58.76  Aligned_cols=115  Identities=21%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             chHHHHHHh-----CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeecccc-CHHHH
Q 018344            2 NRCLSYAFA-----SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVI   75 (357)
Q Consensus         2 ~~~i~~~~~-----~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~~l   75 (357)
                      .+|+.+...     ..|+++.+|-+....-.+....-...+|+.|++.++.+.+-..+-.+|+||+|.++.|+. ....+
T Consensus         4 ~~~~~~e~~~rsp~~~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l   83 (260)
T KOG2739|consen    4 KRLIHLELRGRSPREQVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGL   83 (260)
T ss_pred             hhhHHHhhccCChhhhhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccc
Confidence            345555444     345667676433222234433345667888888888777655677889999999999954 22345


Q ss_pred             HHHHcCCCCccEEeeecCCC--CCcc-CcCCCCCccEEEecccC
Q 018344           76 RDMVAGCPLIEYININNCPG--LKSL-QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        76 ~~l~~~~~~L~~L~L~~c~~--l~~l-~l~~~~~L~~L~l~~c~  116 (357)
                      .-++..||+|++|++++|..  +..+ .+..+.+|..|++..|.
T Consensus        84 ~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   84 EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             eehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            55666789999999999763  2222 12234677788888776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.66  E-value=0.00039  Score=65.77  Aligned_cols=135  Identities=19%  Similarity=0.283  Sum_probs=72.4

Q ss_pred             CcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--
Q 018344           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--   99 (357)
Q Consensus        23 ~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--   99 (357)
                      +....+|..+.++..|+.|+|+.|.+.. |..+..| -|++|-+++|.++  .++.-++..+.|..|+.+.|.. ..+  
T Consensus       108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei-~slps  183 (722)
T KOG0532|consen  108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEI-QSLPS  183 (722)
T ss_pred             ccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccc--cCCcccccchhHHHhhhhhhhh-hhchH
Confidence            3455667777777777777777766554 4333333 3677777776542  1233344556666666666542 222  


Q ss_pred             CcCCCCCccEEEecccCC-Cc-ceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCH
Q 018344          100 QLLGLNKLKEIKLDSNRC-GL-ERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus       100 ~l~~~~~L~~L~l~~c~~-~l-~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      .+.++.+|+.|.+..++. .+ .+.. .+ .|.+|+++.+.+. ....|..|+.|+.|.|++|.+..
T Consensus       184 ql~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            222334555555555541 11 1111 11 4555566553321 12667777888888888877643

>PLN03150 hypothetical protein; Provisional

Probab=96.66  E-value=0.0021  Score=64.06  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             EEEecCCcc-eecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRI-YNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~-~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .|+++.+.. ..+|..+..+++|+.|+|++|.+.+  |..+..+++|+.|+|++|.++.. ++..++++++|+.|+|++|
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCC
Confidence            355666544 3788899999999999999998865  66789999999999999988543 4566789999999999998


Q ss_pred             CCCCccC--cCC-CCCccEEEecccC
Q 018344           94 PGLKSLQ--LLG-LNKLKEIKLDSNR  116 (357)
Q Consensus        94 ~~l~~l~--l~~-~~~L~~L~l~~c~  116 (357)
                      ..-..++  +.. ..++..+++.+|.
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCc
Confidence            6432322  111 1345677777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.59  E-value=0.00017  Score=68.41  Aligned_cols=81  Identities=28%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             cccCCCccEEEeeccccCCCCC-ccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccE
Q 018344           32 VFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKE  109 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~p~~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~  109 (357)
                      +..+++|+.|++.++.+..... ...+++|++|++++|.+ +...+    ..++.|+.|++.+|..-..-.+..+..|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhc
Confidence            4456677777777776665333 56677777777777766 22222    234457777777765322112222456666


Q ss_pred             EEecccC
Q 018344          110 IKLDSNR  116 (357)
Q Consensus       110 L~l~~c~  116 (357)
                      +++++|.
T Consensus       167 l~l~~n~  173 (414)
T KOG0531|consen  167 LDLSYNR  173 (414)
T ss_pred             ccCCcch
Confidence            6666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.44  E-value=4.2e-05  Score=74.09  Aligned_cols=16  Identities=31%  Similarity=0.328  Sum_probs=10.2

Q ss_pred             cccccccceeeccccc
Q 018344          146 SSCKNLTHLRLDGLSI  161 (357)
Q Consensus       146 ~~~~~L~~L~L~~~~i  161 (357)
                      ..+..|+.|.|.||.+
T Consensus       276 wsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  276 WSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHHHHHHHhhcCCcc
Confidence            3455677777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.35  E-value=0.01  Score=49.18  Aligned_cols=81  Identities=21%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC--CCcc-CcCCCCCccEEE
Q 018344           35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSL-QLLGLNKLKEIK  111 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~--l~~l-~l~~~~~L~~L~  111 (357)
                      ......++|+++.+..-..+..++.|.+|.|.+|.++.-. +.+-.-+|+|..|.|.+|+.  +..+ .+..||+|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3467778888887765446778899999999999873211 23334578889999988763  1121 334567888887


Q ss_pred             ecccC
Q 018344          112 LDSNR  116 (357)
Q Consensus       112 l~~c~  116 (357)
                      +-++.
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            77665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.22  E-value=0.0032  Score=38.89  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=26.3

Q ss_pred             CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        58 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      ++|++|++++|.+++  ++..++++++|+.|++++|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999997753  45557889999999998875

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.0013  Score=56.52  Aligned_cols=100  Identities=23%  Similarity=0.203  Sum_probs=56.1

Q ss_pred             CCCccEEeeecCCCCCccCcCCCCCccEEEecccCC----CcceeEeecceeeEEEEeecCCCc---eeeccccccccce
Q 018344           82 CPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC----GLERVYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHL  154 (357)
Q Consensus        82 ~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~----~l~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L  154 (357)
                      ...|+.|++.++...+...+..+|+|++|.++.|.+    ++......+|+|+++.++++.+..   ......+.+|+.|
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            445666666666544444455567888888887731    222223346777777777754321   1123455667777


Q ss_pred             eecccccCH--HHHHHHhccCCccceeec
Q 018344          155 RLDGLSITD--KWLYNQISELPFLEYLAL  181 (357)
Q Consensus       155 ~L~~~~i~~--~~~~~l~~~~~~L~~L~l  181 (357)
                      ++..+..+.  +.-...+.-+|+|+.|+-
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccc
Confidence            777665432  222344555677777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.11  E-value=0.0044  Score=53.68  Aligned_cols=88  Identities=17%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             cCcccccCCCccEEEeeccccCC-----C-------CCccCCCCCceEEeecccc---CHHHHHHHHcCCCCccEEeeec
Q 018344           28 LPQIVFYLKSIYVLDFEFCKLEP-----P-------RSTVTLFSLRKLCLSFVHV---DDEVIRDMVAGCPLIEYININN   92 (357)
Q Consensus        28 lP~~i~~~~~L~~L~Ls~~~~~~-----p-------~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~~~L~~L~L~~   92 (357)
                      +-..+.+-++|+.-+++......     +       ....+||.|+..+||.|.+   ....+..++++...|++|.|++
T Consensus        50 l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N  129 (388)
T COG5238          50 LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN  129 (388)
T ss_pred             HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence            33444556678888877642211     1       1345789999999999987   3455667788888999999998


Q ss_pred             CCCCCcc----------------CcCCCCCccEEEecccC
Q 018344           93 CPGLKSL----------------QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        93 c~~l~~l----------------~l~~~~~L~~L~l~~c~  116 (357)
                      |.. ..+                ...+-|.|+......|+
T Consensus       130 nGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238         130 NGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             CCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            863 111                01123778888777776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.07  E-value=0.01  Score=49.15  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      +|++++....++. +-.++.|..|.|..|.+..  |..-.-+|+|++|.|.+|++ ....+.. +..||.|++|.+-+++
T Consensus        47 iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   47 IDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             ecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            5666665554442 3457899999999988766  44445689999999999977 4444444 3579999999998876


Q ss_pred             C
Q 018344           95 G   95 (357)
Q Consensus        95 ~   95 (357)
                      .
T Consensus       125 v  125 (233)
T KOG1644|consen  125 V  125 (233)
T ss_pred             h
Confidence            3

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.58  E-value=0.0022  Score=60.85  Aligned_cols=124  Identities=22%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             CCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEec
Q 018344           35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD  113 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~  113 (357)
                      +..++.+++..+.+.. -.....+.+|..|++.+|.+  ..+...+.++++|++|+++++..-..-.+..++.|+.|.+.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence            4555555555555443 22456677777777777744  22233245567777777777653222233344557777777


Q ss_pred             ccCC-CcceeEeecceeeEEEEeecCCCceee--ccccccccceeeccccc
Q 018344          114 SNRC-GLERVYINGVNVHSVDIKVYLEPCEVN--VSSCKNLTHLRLDGLSI  161 (357)
Q Consensus       114 ~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~L~~L~L~~~~i  161 (357)
                      +|.. ....+ -..+.|+.+.+++........  ...+.+++.+.+.++.+
T Consensus       149 ~N~i~~~~~~-~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  149 GNLISDISGL-ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cCcchhccCC-ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence            6652 11111 114455666665543321112  24556666677766654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.0029  Score=52.29  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             cceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCccC
Q 018344           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (357)
Q Consensus        24 ~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~  100 (357)
                      ..+++|-.-..--.++.++-+++.+..  -..+.+++.++.|.+.+|.- .+..+..+-+-.|+|+.|++++|+.++.-.
T Consensus        89 g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen   89 GYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             ceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            345777543333357777777765432  22566788888999999865 888888888888999999999999877654


Q ss_pred             cC---CCCCccEEEecc
Q 018344          101 LL---GLNKLKEIKLDS  114 (357)
Q Consensus       101 l~---~~~~L~~L~l~~  114 (357)
                      +.   .+++|+.|.+.+
T Consensus       169 L~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHHhhhhHHHHhcC
Confidence            33   346777776653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.0028  Score=55.02  Aligned_cols=61  Identities=18%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             cceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344          126 GVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (357)
Q Consensus       126 ~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  186 (357)
                      .|.|+.|.++-+.+..-..+..|++|++|+|..|.|.+-.--..+.++|+|+.|.|..++.
T Consensus        40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            4455555554443332235678999999999999886533344578999999999976543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.27  E-value=0.012  Score=50.98  Aligned_cols=172  Identities=16%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             cCCCccEEEeeccccCCC------CCccCCCCCceEEeecccc---CHHH------HHHHHcCCCCccEEeeecCCC-CC
Q 018344           34 YLKSIYVLDFEFCKLEPP------RSTVTLFSLRKLCLSFVHV---DDEV------IRDMVAGCPLIEYININNCPG-LK   97 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p------~~~~~l~~L~~L~L~~~~~---~~~~------l~~l~~~~~~L~~L~L~~c~~-l~   97 (357)
                      .+++++.++||+|.+...      ..+.+-.+|+..+++....   .++.      +-..+..||.|+..+|+.|.. .+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            477899999999987761      1345678899999987643   2221      222345899999999998753 11


Q ss_pred             cc-----CcCCCCCccEEEecccCCCcc---ee------------EeecceeeEEEEeecCCC-c-----eeeccccccc
Q 018344           98 SL-----QLLGLNKLKEIKLDSNRCGLE---RV------------YINGVNVHSVDIKVYLEP-C-----EVNVSSCKNL  151 (357)
Q Consensus        98 ~l-----~l~~~~~L~~L~l~~c~~~l~---~~------------~~~~p~L~~L~l~~~~~~-~-----~~~~~~~~~L  151 (357)
                      ..     -+++...|++|.+.+|..+..   .+            .-+.|.|+++....+..- +     ...+.+-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            11     123447899999998863211   01            225788888877653221 1     1123333579


Q ss_pred             cceeecccccCHHHHHH----HhccCCccceeeccccccc--cccc-----cccccccEEEcccc
Q 018344          152 THLRLDGLSITDKWLYN----QISELPFLEYLALHYCMKL--RSIN-----ISSPRLKELVFERC  205 (357)
Q Consensus       152 ~~L~L~~~~i~~~~~~~----l~~~~~~L~~L~l~~~~~l--~~l~-----~~~~~L~~L~l~~c  205 (357)
                      +.+.+..|.|..+.+..    -+..+.+|+.|++..+..-  .+..     ..-+.|++|.+.+|
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            99999988886643332    2456889999999754422  1111     11345789999988

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.39  E-value=0.0065  Score=47.26  Aligned_cols=81  Identities=21%  Similarity=0.404  Sum_probs=57.0

Q ss_pred             CeEEE-EEecCCcceecCcccccC---CCccEEEeeccccCC-CCC-ccCCCCCceEEeeccccCHHHHHHHHcCCCCcc
Q 018344           13 VKELK-LDVGCCRIYNLPQIVFYL---KSIYVLDFEFCKLEP-PRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIE   86 (357)
Q Consensus        13 v~~l~-l~~~~~~~~~lP~~i~~~---~~L~~L~Ls~~~~~~-p~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~   86 (357)
                      .+|+. +|++.+....+|+.+..+   ..|+..+|++|.+.. |.. ...++..+.++|++|.+++  ++.-+...|.|+
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr  103 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALR  103 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhh
Confidence            34443 566666666677666554   456666899998876 443 3567899999999997644  344467789999


Q ss_pred             EEeeecCCC
Q 018344           87 YININNCPG   95 (357)
Q Consensus        87 ~L~L~~c~~   95 (357)
                      .|+++.|+.
T Consensus       104 ~lNl~~N~l  112 (177)
T KOG4579|consen  104 SLNLRFNPL  112 (177)
T ss_pred             hcccccCcc
Confidence            999999875

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=0.0084  Score=52.16  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             cCCCccEEEeeccccCCCCCccCCCCCceEEeecccc-CHHHHHHHHcCCCCccEEeeecCCCCCcc-------CcCCCC
Q 018344           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGLKSL-------QLLGLN  105 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-------~l~~~~  105 (357)
                      .++.|++|.||-|.+..-..+..|++|++|.|..|.+ +.+.+.- +.++|+|+.|.|..|+-...-       -+.-+|
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            4678999999998877755778899999999999988 4444444 568999999999876643221       112357


Q ss_pred             CccEEE
Q 018344          106 KLKEIK  111 (357)
Q Consensus       106 ~L~~L~  111 (357)
                      +|++||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            787775

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.22  E-value=0.17  Score=27.15  Aligned_cols=25  Identities=36%  Similarity=0.777  Sum_probs=20.9

Q ss_pred             CCceEEeecccc-CHHHHHHHHcCCC
Q 018344           59 SLRKLCLSFVHV-DDEVIRDMVAGCP   83 (357)
Q Consensus        59 ~L~~L~L~~~~~-~~~~l~~l~~~~~   83 (357)
                      +||+|.|..+.+ .+..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            588999999988 5557899999887

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.07  E-value=0.027  Score=43.93  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             EEEecCCcceecCccccc-CCCccEEEeeccccCC-CCCccCCCCCceEEeecccc
Q 018344           17 KLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~-~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~   70 (357)
                      .++++++....+|+.+.. .+.++.|+|+++.+.. |..+..++.|+.|+++.|.+
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence            345555555555544432 3345555555554444 44455555555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.41  E-value=0.19  Score=25.64  Aligned_cols=14  Identities=21%  Similarity=0.214  Sum_probs=8.2

Q ss_pred             CccEEEeeccccCC
Q 018344           37 SIYVLDFEFCKLEP   50 (357)
Q Consensus        37 ~L~~L~Ls~~~~~~   50 (357)
                      +|++|++++|.+..
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            35666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.20  E-value=0.3  Score=25.45  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=13.5

Q ss_pred             CCCCceEEeeccccCHHHHHHH
Q 018344           57 LFSLRKLCLSFVHVDDEVIRDM   78 (357)
Q Consensus        57 l~~L~~L~L~~~~~~~~~l~~l   78 (357)
                      +++|++|+|++|.++++.+..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677888888887766666554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.29  E-value=0.59  Score=35.87  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             cCcccc-cCCCccEEEeecc-ccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC-CCCccCcCCC
Q 018344           28 LPQIVF-YLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLLGL  104 (357)
Q Consensus        28 lP~~i~-~~~~L~~L~Ls~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~-~l~~l~l~~~  104 (357)
                      +|...+ +|++|+.+.+... .-.....+.++++|+.+.+..+-....  ...+.+|+.|+.+.+.... .+..-....+
T Consensus         3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~   80 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNC   80 (129)
T ss_dssp             E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred             ECHHHHhCCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeeccccccccccccccccccccccccc
Confidence            444443 4667888777642 212234667777788887776411111  2234566677777775411 1112122234


Q ss_pred             CCccEEEec
Q 018344          105 NKLKEIKLD  113 (357)
Q Consensus       105 ~~L~~L~l~  113 (357)
                      ++|+.+.+.
T Consensus        81 ~~l~~i~~~   89 (129)
T PF13306_consen   81 TNLKNIDIP   89 (129)
T ss_dssp             TTECEEEET
T ss_pred             ccccccccC
Confidence            566666553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.15  E-value=0.098  Score=43.51  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             ccccccccceeeccccc-CHHHHHHHhccCCccceeeccccccccccccc----cccccEEEccccc
Q 018344          145 VSSCKNLTHLRLDGLSI-TDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCE  206 (357)
Q Consensus       145 ~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~  206 (357)
                      +.+++.++.|.+.++.. .|..+..+-.-.|+|+.|+|+.|+.+++-...    .++|+.|.+.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            33445556666665543 33334444444566666666666665432221    4555555555443

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=87.96  E-value=1.1  Score=28.49  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             CCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEeec
Q 018344          293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEW  334 (357)
Q Consensus       293 ~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~~  334 (357)
                      ...+|+.+++.++.  ....-.+++..+++++|.||+++|.+
T Consensus        12 l~s~Lk~v~~~~f~--g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen   12 LLSHLKFVEIKGFR--GEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             hhheeEEEEEEeee--CcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            34688999998875  23334678899999999999999853

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=83.66  E-value=0.86  Score=21.60  Aligned_cols=11  Identities=18%  Similarity=0.323  Sum_probs=4.3

Q ss_pred             CccEEEeeccc
Q 018344           37 SIYVLDFEFCK   47 (357)
Q Consensus        37 ~L~~L~Ls~~~   47 (357)
                      +|+.|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            34444444444

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.36  E-value=1.5  Score=23.31  Aligned_cols=20  Identities=35%  Similarity=0.345  Sum_probs=9.6

Q ss_pred             CCCceEEeeccc-cCHHHHHH
Q 018344           58 FSLRKLCLSFVH-VDDEVIRD   77 (357)
Q Consensus        58 ~~L~~L~L~~~~-~~~~~l~~   77 (357)
                      ++|++|+|++|. +++..+..
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHH
Confidence            445555555553 34444444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.53  E-value=1.7  Score=23.67  Aligned_cols=22  Identities=41%  Similarity=0.365  Sum_probs=15.9

Q ss_pred             CCCceEEeeccccCHHHHHHHH
Q 018344           58 FSLRKLCLSFVHVDDEVIRDMV   79 (357)
Q Consensus        58 ~~L~~L~L~~~~~~~~~l~~l~   79 (357)
                      ++|++|+|++|.+.++....+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5688888888888766655543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.64  E-value=2.2  Score=41.13  Aligned_cols=87  Identities=18%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             HHHHcCCCCccEEeeecCCCCCccCcC----CCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccc
Q 018344           76 RDMVAGCPLIEYININNCPGLKSLQLL----GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL  151 (357)
Q Consensus        76 ~~l~~~~~~L~~L~L~~c~~l~~l~l~----~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L  151 (357)
                      +.+-.+.|.+..++|++|....--.++    ..|+|+.|+|++|. .....   .          ...   ..+++ ..|
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~-~~~~~---~----------~el---~K~k~-l~L  272 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH-SKISS---E----------SEL---DKLKG-LPL  272 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccch-hhhcc---h----------hhh---hhhcC-CCH
Confidence            444446777888887776531111111    12667777776653 00000   0          000   12223 238


Q ss_pred             cceeecccccCH------HHHHHHhccCCccceee
Q 018344          152 THLRLDGLSITD------KWLYNQISELPFLEYLA  180 (357)
Q Consensus       152 ~~L~L~~~~i~~------~~~~~l~~~~~~L~~L~  180 (357)
                      ++|.+.||.++.      +.+..+-..||.|..||
T Consensus       273 eel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  273 EELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             HHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence            888888887754      33344455788888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 22/238 (9%)

Query: 3   RCLSYAFASNVKELKLDVGCCRI--YNLPQIVFYLKSIYVLDFEFCKLEP---------P 51
             L+ A A +++ LKLD  C       L  IV + + I  L  E                
Sbjct: 130 DRLAKARADDLETLKLD-KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 52  RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-GLNKLKEI 110
           +   +L  L      F  +  + +  +   C  +  + + +   L+ +        L+E 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 111 KLDS--NRCGLERVYINGVNVHSVDI----KVYLEPCEVNVSSCKNLTHLRLDGLSITDK 164
              S     G+   Y+N V    +       +      +       +  L L    +  +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 165 WLYNQISELPFLEYLALHYCMK---LRSINISSPRLKELVFERCEELVEFELDTPNLS 219
                I + P LE L     +    L  +     +LK L  ER  +    E +   +S
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN-----------KL 107
            L  + +    + +E +  +      +    +      + +  L L+           KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 108 KEIKLDSNRC-----GLERVYINGVNVHSVDIKVYLEPCEVN-------VSSCKNLTHLR 155
           +       +      GL  +     NV  + +         +          C NL  L 
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY----VGESDEGLMEFSRGCPNLQKLE 494

Query: 156 LDGLSITDKWLYNQISELPFLEYLALHYC------MKLRSINISSPRLKELVFERCEEL 208
           + G   +++ +   +++LP L YL +           L  +      ++ +   R  E+
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 17/174 (9%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAG-CPLIEYININNCPGL--KSLQLL--GLNKLKEIKLD 113
            L+ +    + V D  +  +       +E + ++ C G     L  +     K+K + ++
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 114 SNRC------GLERVYINGVNVHSVDIKVYLEPCEVN-------VSSCKNLTHLRLDGLS 160
            +         L  +  +  ++  ++     E  +++         +C++L  +++    
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 161 -ITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFEL 213
            +     +   + L      +L+  + +    ++    ++L       +   E+
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 4e-09
 Identities = 64/410 (15%), Positives = 115/410 (28%), Gaps = 111/410 (27%)

Query: 12  NVKELKLDVGCCRIYNLPQIVFY---LKSIYV-------LDFEF-CKLEPPRSTVTLF-- 58
                  +  C  + ++P+ +     +  I +           F   L      V  F  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 59  ------------SLRKLCL-------SFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99
                        ++            ++   D +  D        +Y N++       L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKY-NVSRLQPYLKL 140

Query: 100 QLLGLNKLKEIKLDSNRCGLERVYING-------VNVHSV--DIKVYLE-PCEV---NVS 146
           +      L E++   N      V I+G            V    KV  +   ++   N+ 
Sbjct: 141 R----QALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCE 206
           +C N     L+ L      L  QI   P     + H       I+     L+ L+  +  
Sbjct: 191 NC-NSPETVLEMLQK----LLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 207 E---LVEFELD-TPNLSIFKCFNY------VESFSSNALALSQTLLCFISHPVDNEWYLK 256
           E   LV   L    N   +  FN          F      LS       +H   +   + 
Sbjct: 244 ENCLLV---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMT 297

Query: 257 FIKLLARFNLCSNVLNLQCN---HEAV--------LIPRELREILCPPLTYHKHVSFSVL 305
                 + +L    L+ +      E +        +I   +R+ L       KHV+   L
Sbjct: 298 LTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL 355

Query: 306 SEILEVSLANL---------VDCLL-----WITPHAETLSIEWPNINFYE 341
           + I+E SL  L             +      I      LS+ W ++   +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSD 403

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 60/387 (15%), Positives = 114/387 (29%), Gaps = 84/387 (21%)

Query: 24  RIYNLPQI-----VFYLKSIYVLDFEFCKLEPPRSTVTLFSLR---KLCL-SFVHVDDEV 74
           R+YN  Q+     V  L+    L     +L P ++ V +  +    K  +   V +  +V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKV 176

Query: 75  IRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI 134
              M      I ++N+ NC   +++ L  L KL   ++D N         N + +    I
Sbjct: 177 QCKMDFK---IFWLNLKNCNSPETV-LEMLQKLL-YQIDPNWTSRSDHSSN-IKLRIHSI 230

Query: 135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL---RSIN 191
           +  L     +      L  L L  +   +                 L  C  L   R   
Sbjct: 231 QAELRRLLKSKPYENCL--LVLLNVQ--NAKA---------WNAFNLS-CKILLTTRFKQ 276

Query: 192 ISSPRLKELVFERCEELVEFELDTPN-LSIF-KCFNY-VESFSSNALALSQTLLCFISHP 248
           ++             +     L      S+  K  +   +      L  +   L  I+  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 249 VDNE---W----YLKFIKLLARFNLCSNVLN---LQCNHEA-------VLIPRELREILC 291
           + +    W    ++   KL        NVL     +   +          IP  L  ++ 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 292 PPLTYHKHVSFSVLSEILEVSLAN---------LVDCLLWITPHAETL-----SIEWPNI 337
             +         V++++ + SL           +    L +    E       SI    +
Sbjct: 397 FDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----V 450

Query: 338 NFYELSFQV-----------QYIFNFI 353
           + Y +               QY ++ I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHI 477

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 29/188 (15%)

Query: 44  EFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC---------- 93
                +P     + F ++ + LS   ++   +  +++ C  ++ +++             
Sbjct: 79  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138

Query: 94  ---PGLKSLQLLGLNKLKEIKLD--SNRC-GLERVYING-VNVHSVDIKVYLEPCEVNVS 146
                L  L L G +   E  L    + C  L+ + ++   +     ++V +        
Sbjct: 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV----- 193

Query: 147 SCKNLTHLRLDGLS--ITDKWLYNQISELPFLEYLALHYCMKL--RSINI--SSPRLKEL 200
             + +T L L G    +    L   +   P L +L L   + L             L+ L
Sbjct: 194 -SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 201 VFERCEEL 208
              RC ++
Sbjct: 253 SLSRCYDI 260

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 25/198 (12%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL--KSLQLL--GLNKLKEIKLDS 114
            L ++ L  + V D+ +  +       + + +++C G     L  +      LKE+ L  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-- 163

Query: 115 NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS--ITDKWLYNQISE 172
               ++ V  + ++                  +  +L  L +  L+  ++   L   ++ 
Sbjct: 164 RESDVDDVSGHWLSHFP--------------DTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 173 LPFLEYLALHYCMK---LRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVES 229
            P L+ L L+  +    L ++   +P+L+EL        V  ++ +           +  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 230 FSSNALALSQTLLCFISH 247
            S    A+   L    S 
Sbjct: 270 LSGFWDAVPAYLPAVYSV 287

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 36/180 (20%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN--KLKEIKLDSNR 116
            L  L LS+  V    +  ++  CP ++ + + +      L++L      L+E+++  + 
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 117 CGLERVYINGVNVHSVDIKVYLEPCE---------VNVS---------SCKNLTHLRLDG 158
             +       V +    +      C            ++         +  N+T  RL  
Sbjct: 350 PFVME---PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

Query: 159 LS----------ITDKWLYNQISELPFLEYLALHYCM---KLRSINISSPRLKELVFERC 205
           +             D      +     L  L+L   +       I   + +++ L     
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 32/180 (17%)

Query: 8   AFASNVKELK-LDVGCCRIYN--LPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLC 64
           + +    +L+ +   C ++ N  L  I     ++        + + P             
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL----- 420

Query: 65  LSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI 124
                  D     +V  C  +  ++++     K  + +G          +    +E + +
Sbjct: 421 -------DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIG----------TYAKKMEMLSV 463

Query: 125 NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184
                  + +   L       S C +L  L +      DK L    S+L  +  L +  C
Sbjct: 464 AFAGDSDLGMHHVL-------SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 54/273 (19%)

Query: 57  LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC--------PGLKSLQLLGL--NK 106
                K  L    V D V          I+ I  NN           L ++  L L  NK
Sbjct: 20  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 76

Query: 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--- 163
           L +IK  +N   L  ++++   +  +           ++   K L  L L+   I+D   
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDLS----------SLKDLKKLKSLSLEHNGISDING 126

Query: 164 -------KWLY---NQISELPFLEYLALHYCMKLRSINISSPRLKELV-FERCEELVEFE 212
                  + LY   N+I+++  L  L      KL ++++   ++ ++V      +L    
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLT-----KLDTLSLEDNQISDIVPLAGLTKLQNLY 181

Query: 213 LDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNE--WYLKFIKLLARFNLCSNV 270
           L           N++    + A   +  +L   S    N+   +   + +          
Sbjct: 182 LS---------KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 271 LNLQCNHEAVLIPRELREILCPPLTYHKHVSFS 303
           L             +   +      +   VSF 
Sbjct: 233 LVTPEIISDDGDYEKP-NVKWHLPEFTNEVSFI 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 45/200 (22%)

Query: 17  KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVI 75
            + +    +  LP  +     +  L      L   P S  +L  LR+L +          
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR--------- 158

Query: 76  RDMVAGCPLIEYI--NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVD 133
                 CP +  +   + +       Q  GL  L+ ++L+     +  +           
Sbjct: 159 -----ACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTG--IRSL----------- 198

Query: 134 IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI--N 191
                 P    +++ +NL  L++    ++   L   I  LP LE L L  C  LR+    
Sbjct: 199 ------PAS--IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 192 ISS-PRLKELVFERCEELVE 210
                 LK L+ + C  L+ 
Sbjct: 249 FGGRAPLKRLILKDCSNLLT 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 11  SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSFV 68
           S ++EL L      +  LP  +  L ++  L     K E     S     SL  L +   
Sbjct: 278 SGLQELDLTA--THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 69  HVDDEVIRDMVAGCPLIEYININNCP----GLKSLQLLGLNKLKEIKLDSNRCGLERVYI 124
               E+    +     +  +++++         +LQL  L+ L+ + L  N         
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-------P 388

Query: 125 NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184
             +   +                C  L  L L    +  K   +    L  L+ L L + 
Sbjct: 389 LSLKTEAF-------------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 185 MKLRSINISS----PRLKEL 200
             L   +       P L+ L
Sbjct: 436 -LLDISSEQLFDGLPALQHL 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.57
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.52
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.5
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.26
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.19
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.02
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.01
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.93
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.92
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.92
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.68
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.48
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.94
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.8

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.71  E-value=3e-17  Score=149.19  Aligned_cols=197  Identities=19%  Similarity=0.266  Sum_probs=150.5

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      .+|+.+++  +++....+|..++++++|++|+|++|.+.. |..+.++++|++|+|++|.++  .++..++.+++|++|+
T Consensus        81 ~~l~~L~L--~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALEL--RSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEE--ESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEc--cCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEE
Confidence            67777765  556667999999999999999999998776 778899999999999999875  3455678899999999


Q ss_pred             eecCCCCCccCc-----------CCCCCccEEEecccCCC-cceeEeecceeeEEEEeecCCC-ceeeccccccccceee
Q 018344           90 INNCPGLKSLQL-----------LGLNKLKEIKLDSNRCG-LERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRL  156 (357)
Q Consensus        90 L~~c~~l~~l~l-----------~~~~~L~~L~l~~c~~~-l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L  156 (357)
                      +++|..+..++.           .++++|++|++++|... ++.....+++|++|+++++.+. ....+..+++|+.|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence            999887665532           23689999999998731 2222234778999999885432 1235778889999999


Q ss_pred             cccccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc
Q 018344          157 DGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       157 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~  212 (357)
                      ++|.+.+. ++..+.++++|+.|++++|.....++..   .++|++|++++|..++.+.
T Consensus       237 s~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          237 RGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             TTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             cCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            98876543 3445678899999999888877766643   5788999999986555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=4.3e-17  Score=161.17  Aligned_cols=193  Identities=12%  Similarity=0.131  Sum_probs=133.1

Q ss_pred             cCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcCC------CCccEEeeecCCCC
Q 018344           28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGC------PLIEYININNCPGL   96 (357)
Q Consensus        28 lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~------~~L~~L~L~~c~~l   96 (357)
                      +|..+.  ++++|++|+|++|.+..  |..+.++++|++|++++|. ++...++.-++.+      ++|++|++++|.. 
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence            999999  99999999999998655  7789999999999999998 7764456555554      9999999999874 


Q ss_pred             CccC----cCCCCCccEEEecccCCCccee--EeecceeeEEEEeecCCC-ceeecccccc-ccceeecccccCHHHHHH
Q 018344           97 KSLQ----LLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLYN  168 (357)
Q Consensus        97 ~~l~----l~~~~~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~-~~~~~~~~~~-L~~L~L~~~~i~~~~~~~  168 (357)
                      +.++    +.++++|++|++++|.. ...+  ....++|++|+++++.+. ....+.++++ |++|++++|.++  .++.
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~  394 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPN  394 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCC-EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCS
T ss_pred             CccCchhhhccCCCCCEEeCcCCcC-ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccch
Confidence            3443    45678999999999872 2122  234678888888874322 1134667777 889999888875  2344


Q ss_pred             HhccC--Cccceeecccccccccccc----------ccccccEEEccccccccccc---c-cCCCcceEEeee
Q 018344          169 QISEL--PFLEYLALHYCMKLRSINI----------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFN  225 (357)
Q Consensus       169 l~~~~--~~L~~L~l~~~~~l~~l~~----------~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~  225 (357)
                      .+...  ++|+.|++++|.....++.          ..++|+.|+++++ .++++.   + ..++|+.+...+
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC
Confidence            44443  3788888876654332222          1346777888777 455433   1 134555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=1.3e-16  Score=145.88  Aligned_cols=189  Identities=15%  Similarity=0.210  Sum_probs=130.4

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..++++++  +++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+..  ++ .+..+++|++|++
T Consensus        44 ~~L~~L~l--~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVV--AGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEEC--CSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEEC
T ss_pred             ccccEEEE--eCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEEC
Confidence            45666654  4555666764 77789999999999887762248889999999999997743  22 3678899999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCCCccee--EeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~  168 (357)
                      ++|..-..-.+..+++|++|++++|. ....+  ...+++|++|.+++........+..+++|++|++++|.+.+-  +.
T Consensus       118 ~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~  194 (347)
T 4fmz_A          118 NEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP  194 (347)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG
T ss_pred             cCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc--cc
Confidence            98864322235567889999999886 33222  234678888888875443212367788899999988887542  11


Q ss_pred             HhccCCccceeeccccccccccc-c-ccccccEEEcccccccccc
Q 018344          169 QISELPFLEYLALHYCMKLRSIN-I-SSPRLKELVFERCEELVEF  211 (357)
Q Consensus       169 l~~~~~~L~~L~l~~~~~l~~l~-~-~~~~L~~L~l~~c~~L~~~  211 (357)
                       +..+++|+.|+++++. +..++ . ..++|++|++++| .++++
T Consensus       195 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n-~l~~~  236 (347)
T 4fmz_A          195 -LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNN-KITDL  236 (347)
T ss_dssp             -GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred             -ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCC-ccCCC
Confidence             6778888888886653 32222 2 2567888888887 45543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=8.8e-17  Score=162.80  Aligned_cols=286  Identities=12%  Similarity=0.071  Sum_probs=175.6

Q ss_pred             cCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHc-------CCCCccEEeeecCCC
Q 018344           28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVA-------GCPLIEYININNCPG   95 (357)
Q Consensus        28 lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~-------~~~~L~~L~L~~c~~   95 (357)
                      +|..+.  ++++|++|+|++|.+..  |..+.++++|++|+|++|. ++...++.-++       .+++|++|++++|..
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            999988  99999999999998655  7788999999999999998 77634454333       456999999999874


Q ss_pred             CCccC----cCCCCCccEEEecccCCC-cceeEeecceeeEEEEeecCCC-ceeecccccc-ccceeecccccCHHHHHH
Q 018344           96 LKSLQ----LLGLNKLKEIKLDSNRCG-LERVYINGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLYN  168 (357)
Q Consensus        96 l~~l~----l~~~~~L~~L~l~~c~~~-l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~-L~~L~L~~~~i~~~~~~~  168 (357)
                       ..++    +.++++|+.|++++|... ++ ....+++|+.|+++++.+. ....+.++++ |+.|++++|.++  .++.
T Consensus       561 -~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~  636 (876)
T 4ecn_A          561 -EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPN  636 (876)
T ss_dssp             -CBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCS
T ss_pred             -CccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCch
Confidence             3443    456789999999999732 22 2234789999999885432 1235677888 999999999885  3444


Q ss_pred             HhccCC--ccceeecccccccccccc--------ccccccEEEccccccccccc---c-cCCCcceEEeeeee----eeE
Q 018344          169 QISELP--FLEYLALHYCMKLRSINI--------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----ESF  230 (357)
Q Consensus       169 l~~~~~--~L~~L~l~~~~~l~~l~~--------~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~~----~~~  230 (357)
                      .+...+  +|+.|++++|.....++.        ..++|+.|++++| .++.+.   + ..++|+.+...+..    |..
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            444443  488999876654332221        1247888888877 555443   1 33556655554432    111


Q ss_pred             eccc--------ccceeEEEEEEecCCChHHHHHHHHHHh--hcccccceeEEeeccccceecccccccCCCCCCCcceE
Q 018344          231 SSNA--------LALSQTLLCFISHPVDNEWYLKFIKLLA--RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHV  300 (357)
Q Consensus       231 ~~~~--------~~L~~~~l~~~~~~~~~~~~~~l~~~l~--~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L  300 (357)
                      ....        ..|+.++++.+....       +...+.  .+++|+.|.+..+....  +|..+.     .+++|+.|
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~-------lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~-----~L~~L~~L  781 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDDFRATTLPYLSNMDVSYNCFSS--FPTQPL-----NSSQLKAF  781 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCCC-------CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCTTCCEE
T ss_pred             HhccccccccccCCccEEECCCCCCcc-------chHHhhhccCCCcCEEEeCCCCCCc--cchhhh-----cCCCCCEE
Confidence            1111        156666664322111       122232  66777777775543332  444333     24667777


Q ss_pred             EEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344          301 SFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (357)
Q Consensus       301 ~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l  332 (357)
                      .+..+++.........++.-+..+|+|++|.+
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            77542100000111122333456777777777

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.63  E-value=1.2e-15  Score=139.57  Aligned_cols=271  Identities=13%  Similarity=0.083  Sum_probs=182.2

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      +.++.++  ++++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+...  +. +..+++|++|++
T Consensus        66 ~~L~~L~--l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           66 TNLEYLN--LNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNL  139 (347)
T ss_dssp             TTCCEEE--CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCccEEE--ccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEEC
Confidence            4566665  46666777777 778999999999999887754788999999999999987432  22 678999999999


Q ss_pred             ecCCCCCcc-CcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344           91 NNCPGLKSL-QLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (357)
Q Consensus        91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~  168 (357)
                      ++|..+..+ .+..+++|++|++++|.. .... ...+++|++|+++++.+.....+..+++|+.++++++.+++...  
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--  216 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--  216 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence            999765544 345668999999999873 1111 23578999999988654322236788899999999998865322  


Q ss_pred             HhccCCccceeecccccccccccc--ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEEe
Q 018344          169 QISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFIS  246 (357)
Q Consensus       169 l~~~~~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~  246 (357)
                       +..+++|+.|++++|. +..++.  ..++|++|++++| .++++..    +             .....++.++++.+.
T Consensus       217 -~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~----~-------------~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTN-QISDINA----V-------------KDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             -GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG----G-------------TTCTTCCEEECCSSC
T ss_pred             -hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCC-ccCCChh----H-------------hcCCCcCEEEccCCc
Confidence             7889999999997764 333332  2578999999988 5555320    0             011233334332211


Q ss_pred             cCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCC
Q 018344          247 HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPH  326 (357)
Q Consensus       247 ~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~  326 (357)
                      ....        +.+..+++++.|.+..+..... .++.+.     .+++|++|.+.+++ .  ..   +.+  +..+|+
T Consensus       277 l~~~--------~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-----~l~~L~~L~L~~n~-l--~~---~~~--~~~l~~  334 (347)
T 4fmz_A          277 ISDI--------SVLNNLSQLNSLFLNNNQLGNE-DMEVIG-----GLTNLTTLFLSQNH-I--TD---IRP--LASLSK  334 (347)
T ss_dssp             CCCC--------GGGGGCTTCSEEECCSSCCCGG-GHHHHH-----TCTTCSEEECCSSS-C--CC---CGG--GGGCTT
T ss_pred             cCCC--------hhhcCCCCCCEEECcCCcCCCc-ChhHhh-----ccccCCEEEccCCc-c--cc---ccC--hhhhhc
Confidence            1111        2356778888888876543221 122222     35788999998653 1  11   112  677889


Q ss_pred             CCeeEe
Q 018344          327 AETLSI  332 (357)
Q Consensus       327 le~L~l  332 (357)
                      |++|.+
T Consensus       335 L~~L~l  340 (347)
T 4fmz_A          335 MDSADF  340 (347)
T ss_dssp             CSEESS
T ss_pred             cceeeh
Confidence            999888

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.63  E-value=3.8e-16  Score=157.70  Aligned_cols=171  Identities=15%  Similarity=0.122  Sum_probs=120.5

Q ss_pred             ccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344           33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK  111 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~  111 (357)
                      ..+++|++|++++|.+.. ++.+.++++|++|++++|.++.. ++..+..+++|++|++++|......+...+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            567888888888887765 33478889999999998877533 3555778899999999888754344444668899999


Q ss_pred             ecccCCCccee---Eee-cceeeEEEEeecCCC--ceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          112 LDSNRCGLERV---YIN-GVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       112 l~~c~~~l~~~---~~~-~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      +++|. ....+   ... +++|++|+++++.+.  ....++++++|++|++++|.+++......+.++++|+.|++++|.
T Consensus       276 L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          276 LAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             CcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            98886 22111   112 488999999874321  124577888999999999988654344457889999999998775


Q ss_pred             cccccccc----cccccEEEcccc
Q 018344          186 KLRSINIS----SPRLKELVFERC  205 (357)
Q Consensus       186 ~l~~l~~~----~~~L~~L~l~~c  205 (357)
                      ....++..    .++|+.|+++++
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSN  378 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSS
T ss_pred             cCccccHHHHhhhcCCcEEEccCC
Confidence            44344433    237888888777

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=1.5e-15  Score=144.68  Aligned_cols=184  Identities=16%  Similarity=0.150  Sum_probs=113.8

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..++.+++  .+.....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+...  .. +.++++|++|++
T Consensus        46 ~~l~~L~l--~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQA--DRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEEC--CSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             ccccEEec--CCCCCccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC--hh-hcCCCCCCEEEC
Confidence            45666654  4555667774 677899999999999877622388999999999999987432  22 778999999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++|..-....+..+++|++|++++|.. .... ...+++|++|.+.+..... ..+.++++|+.|+++++.+++-   ..
T Consensus       120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~  194 (466)
T 1o6v_A          120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSNKVSDI---SV  194 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSSCCCCC---GG
T ss_pred             CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCc-hhhccCCCCCEEECcCCcCCCC---hh
Confidence            988632222356678999999988862 1111 1235666777665421111 1355566666666666665431   12


Q ss_pred             hccCCccceeecccccccccccc-ccccccEEEcccc
Q 018344          170 ISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERC  205 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c  205 (357)
                      +..+++|+.|++++|......+. ..++|++|++++|
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN  231 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence            45566666666654432211111 1345555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=7e-16  Score=151.06  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             CCCCCceEEeeccccC---HHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEEecccCCCc--c---eeEee
Q 018344           56 TLFSLRKLCLSFVHVD---DEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGL--E---RVYIN  125 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~---~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l--~---~~~~~  125 (357)
                      ++++|++|+++++.++   ...++.++.+|++|++|++++|.. ..+  .+.++++|++|+++.+....  .   .....
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4455555555555442   344455555555555555555431 110  01122444444444221000  0   00112


Q ss_pred             cceeeEEEEeecCC-CceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---cccccccEEE
Q 018344          126 GVNVHSVDIKVYLE-PCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLKELV  201 (357)
Q Consensus       126 ~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~~~~~L~~L~  201 (357)
                      +++|+++.+.+... .....+..+++|++|+++++.+++..+...+.++++|+.|+++.+..-..++   ..+++|++|+
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence            33444444433111 0112344566777777777776666665666777777777775221111111   1245666776


Q ss_pred             ccc
Q 018344          202 FER  204 (357)
Q Consensus       202 l~~  204 (357)
                      +++
T Consensus       349 L~~  351 (592)
T 3ogk_B          349 IER  351 (592)
T ss_dssp             EEC
T ss_pred             eec
Confidence            664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=1.5e-16  Score=160.65  Aligned_cols=177  Identities=17%  Similarity=0.069  Sum_probs=100.6

Q ss_pred             ecCcccccCCCccEEEeeccccCC--CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--C
Q 018344           27 NLPQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--Q  100 (357)
Q Consensus        27 ~lP~~i~~~~~L~~L~Ls~~~~~~--p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~  100 (357)
                      .+|..+.++++|++|+|++|.+..  |.  .+.++++|++|+|++|.+.......+..++++|++|++++|..-...  .
T Consensus        91 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            344555566666666666665543  33  45566666666666665421111111245566666666665421111  0


Q ss_pred             ---cCCCCCccEEEecccCCCcceeE-eecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCCc
Q 018344          101 ---LLGLNKLKEIKLDSNRCGLERVY-INGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF  175 (357)
Q Consensus       101 ---l~~~~~L~~L~l~~c~~~l~~~~-~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  175 (357)
                         +.++++|++|++++|. ...... ..+++|++|+++++.... ...++++++|++|++++|.+++. ++..+.++++
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~  248 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTE  248 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSS
T ss_pred             hhhhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCC
Confidence               3445667777776665 211111 346778888887743321 12367788888888888887543 4556788888


Q ss_pred             cceeeccccccccccccc-cccccEEEcccc
Q 018344          176 LEYLALHYCMKLRSINIS-SPRLKELVFERC  205 (357)
Q Consensus       176 L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c  205 (357)
                      |+.|++++|.....++.. .++|++|++++|
T Consensus       249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n  279 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAEN  279 (768)
T ss_dssp             CCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred             CCEEECCCCcccCccCccccCCCCEEECcCC
Confidence            888888776544333322 456777777666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.61  E-value=3.2e-16  Score=149.64  Aligned_cols=185  Identities=17%  Similarity=0.141  Sum_probs=102.0

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++........+|..+.  +++++|+|++|.+..  +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|. 
T Consensus        16 v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-   91 (477)
T 2id5_A           16 VLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNR-   91 (477)
T ss_dssp             EECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCc-
Confidence            4444555566666543  467777777766554  34566777777777777755321 12234566777777777664 


Q ss_pred             CCccC---cCCCCCccEEEecccCCCcce---eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRCGLER---VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~~l~~---~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      ++.+.   +.++++|++|++++|.. ...   ....+++|++|+++++.+..  ...+.++++|++|++++|.+++ ...
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~  169 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPT  169 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCH
T ss_pred             CCccCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cCh
Confidence            33332   33456777777776652 111   11235667777776643321  1245566677777777766643 123


Q ss_pred             HHhccCCccceeecccccccccccc----ccccccEEEcccccccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELV  209 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~  209 (357)
                      ..+.++++|+.|+++++. +..++.    ..++|++|++++|..+.
T Consensus       170 ~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcccc
Confidence            345666777777775443 222211    13556666666654443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=2.7e-15  Score=142.88  Aligned_cols=288  Identities=15%  Similarity=0.106  Sum_probs=152.7

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      +.++.++  ++++....+|+ +.++++|++|++++|.+.....+.++++|++|++++|.+...  +. +..+++|++|++
T Consensus        68 ~~L~~L~--Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQIN--FSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEE--CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEE
T ss_pred             cCCCEEE--CCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEEC
Confidence            3455554  56666677776 778889999999888776622378888899999888877332  22 677888888888


Q ss_pred             ecCCCCCccCcCC---------------------CCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccc
Q 018344           91 NNCPGLKSLQLLG---------------------LNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCK  149 (357)
Q Consensus        91 ~~c~~l~~l~l~~---------------------~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~  149 (357)
                      ++|..-..-.+.+                     +++|++|++++|...-......+++|++|+++++.......++.++
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  221 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT  221 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccC
Confidence            8775211112223                     3445555555544110011112455666665553322111244455


Q ss_pred             cccceeecccccCHHHHHHHhccCCccceeecccccccccccc-ccccccEEEccccccccccc--ccCCCcceEEeeee
Q 018344          150 NLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY  226 (357)
Q Consensus       150 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~~~L~~~~~~~~  226 (357)
                      +|+.|+++++.+++-   ..+..+++|+.|++++|......+. ..++|++|++++| .++.+.  -..++|+.+...+.
T Consensus       222 ~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN  297 (466)
T ss_dssp             TCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCC
Confidence            666666666655431   1245566666666654432211111 1456666666666 343322  12234444443332


Q ss_pred             e--eeE-ecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344          227 V--ESF-SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS  303 (357)
Q Consensus       227 ~--~~~-~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~  303 (357)
                      .  ... ......|+.++++.+......       . +..+++++.|.+..+....  ++      ....+++|+.|++.
T Consensus       298 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~--~~------~l~~l~~L~~L~l~  361 (466)
T 1o6v_A          298 QLEDISPISNLKNLTYLTLYFNNISDIS-------P-VSSLTKLQRLFFYNNKVSD--VS------SLANLTNINWLSAG  361 (466)
T ss_dssp             CCSCCGGGGGCTTCSEEECCSSCCSCCG-------G-GGGCTTCCEEECCSSCCCC--CG------GGTTCTTCCEEECC
T ss_pred             cccCchhhcCCCCCCEEECcCCcCCCch-------h-hccCccCCEeECCCCccCC--ch------hhccCCCCCEEeCC
Confidence            2  000 112345666655432211111       1 4567777777775543221  11      12245778888887


Q ss_pred             EeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344          304 VLSEILEVSLANLVDCLLWITPHAETLSI  332 (357)
Q Consensus       304 ~~~~~~~~~~~~~l~~Ll~~~p~le~L~l  332 (357)
                      .+. .  ..   ..+  +..+|+|+.|.+
T Consensus       362 ~n~-l--~~---~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          362 HNQ-I--SD---LTP--LANLTRITQLGL  382 (466)
T ss_dssp             SSC-C--CB---CGG--GTTCTTCCEEEC
T ss_pred             CCc-c--Cc---cch--hhcCCCCCEEec
Confidence            553 1  11   122  678889998888

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=2.2e-15  Score=147.48  Aligned_cols=284  Identities=16%  Similarity=0.200  Sum_probs=150.4

Q ss_pred             cCCCccEEEeeccccCC--CC----CccCCCCCceEEeeccc--cCHHHHHHHHcCCCCccEEeeecCCC----------
Q 018344           34 YLKSIYVLDFEFCKLEP--PR----STVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPG----------   95 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--p~----~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~~~L~~L~L~~c~~----------   95 (357)
                      +|++|++|++++|.+..  +.    ....+++|++|+++++.  ++...+..+..++++|++|++++|..          
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~  233 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR  233 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence            56677777777765433  11    22356788888888775  56677777777788888888887732          


Q ss_pred             ---CCccCcC-------------------------------------------CCCCccEEEecccCCCc---ceeEeec
Q 018344           96 ---LKSLQLL-------------------------------------------GLNKLKEIKLDSNRCGL---ERVYING  126 (357)
Q Consensus        96 ---l~~l~l~-------------------------------------------~~~~L~~L~l~~c~~~l---~~~~~~~  126 (357)
                         ++.+.+.                                           .+++|++|++++|...-   ..+.-.+
T Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~  313 (594)
T 2p1m_B          234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC  313 (594)
T ss_dssp             CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred             CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence               2222100                                           12445555555444110   0011134


Q ss_pred             ceeeEEEEeecCCC--ceeeccccccccceee---------cccccCHHHHHHHhccCCccceeeccccccccccc----
Q 018344          127 VNVHSVDIKVYLEP--CEVNVSSCKNLTHLRL---------DGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN----  191 (357)
Q Consensus       127 p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L---------~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~----  191 (357)
                      |+|++|.+.+....  .......+++|++|++         ..+.+++..+..+..++++|+.|.+ +|+.+....    
T Consensus       314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l  392 (594)
T 2p1m_B          314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITI  392 (594)
T ss_dssp             TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHH
T ss_pred             CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHH
Confidence            55555555543110  0001123555666655         2234555545555555666666644 343332211    


Q ss_pred             -cccccccEEEcc-----ccccccccc---------ccCCCcceEEeeeeee-----eEecccccceeEEEEEEecCCCh
Q 018344          192 -ISSPRLKELVFE-----RCEELVEFE---------LDTPNLSIFKCFNYVE-----SFSSNALALSQTLLCFISHPVDN  251 (357)
Q Consensus       192 -~~~~~L~~L~l~-----~c~~L~~~~---------i~~~~L~~~~~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~  251 (357)
                       ...++|++|+++     +|.++++..         -..++|+.+...+...     ........|+.+++..+...  .
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~--~  470 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS--D  470 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSS--H
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCc--H
Confidence             125677777777     555666221         1235666666654220     00012456777777543221  1


Q ss_pred             HHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeE
Q 018344          252 EWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLS  331 (357)
Q Consensus       252 ~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~  331 (357)
                         ..+..+..++++|+.|.+..+..........     ...+++|++|++.+++ .    ..+.+..+...+|+++...
T Consensus       471 ---~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~-----~~~l~~L~~L~l~~~~-~----~~~~~~~l~~~lp~l~i~~  537 (594)
T 2p1m_B          471 ---LGMHHVLSGCDSLRKLEIRDCPFGDKALLAN-----ASKLETMRSLWMSSCS-V----SFGACKLLGQKMPKLNVEV  537 (594)
T ss_dssp             ---HHHHHHHHHCTTCCEEEEESCSCCHHHHHHT-----GGGGGGSSEEEEESSC-C----BHHHHHHHHHHCTTEEEEE
T ss_pred             ---HHHHHHHhcCCCcCEEECcCCCCcHHHHHHH-----HHhCCCCCEEeeeCCC-C----CHHHHHHHHHhCCCCEEEE
Confidence               2344556778999999988776532222111     1235789999998775 2    1234455667889987766


Q ss_pred             ee
Q 018344          332 IE  333 (357)
Q Consensus       332 l~  333 (357)
                      +.
T Consensus       538 ~~  539 (594)
T 2p1m_B          538 ID  539 (594)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.9e-15  Score=152.98  Aligned_cols=156  Identities=15%  Similarity=0.168  Sum_probs=108.2

Q ss_pred             CCCccCCCCCceEEeeccccCHH----------------HHHHHHc--CCCCccEEeeecCCCCCccC--cCCCCCccEE
Q 018344           51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSLQ--LLGLNKLKEI  110 (357)
Q Consensus        51 p~~~~~l~~L~~L~L~~~~~~~~----------------~l~~l~~--~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L  110 (357)
                      |..+.++++|++|+|++|.++.+                .++..++  ++++|++|+|++|.....++  +.++++|+.|
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            34567889999999999988652                2455555  89999999999987554443  4567899999


Q ss_pred             EecccC-CC---cce-e------EeecceeeEEEEeecCCC-cee--eccccccccceeecccccCHHHHHHHhccCCcc
Q 018344          111 KLDSNR-CG---LER-V------YINGVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (357)
Q Consensus       111 ~l~~c~-~~---l~~-~------~~~~p~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  176 (357)
                      ++++|. ..   ++. +      ....|+|++|+++++.+. ...  .++++++|+.|++++|.++  .++ .+.++++|
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L  597 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKL  597 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcc
Confidence            999886 21   111 1      112458999999885433 123  5778888999999988885  344 67788889


Q ss_pred             ceeeccccccccccccc---ccc-ccEEEcccccccccc
Q 018344          177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEF  211 (357)
Q Consensus       177 ~~L~l~~~~~l~~l~~~---~~~-L~~L~l~~c~~L~~~  211 (357)
                      +.|++++|. +..++..   .++ |+.|+++++ .++.+
T Consensus       598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~l  634 (876)
T 4ecn_A          598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYI  634 (876)
T ss_dssp             SEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSC
T ss_pred             eEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcC
Confidence            999987654 3355532   455 888888887 45543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=4.6e-16  Score=153.78  Aligned_cols=156  Identities=20%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             CCCccCCCCCceEEeeccccCHH----------------HHHHHHc--CCCCccEEeeecCCCCCcc--CcCCCCCccEE
Q 018344           51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSL--QLLGLNKLKEI  110 (357)
Q Consensus        51 p~~~~~l~~L~~L~L~~~~~~~~----------------~l~~l~~--~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L  110 (357)
                      |..+.++++|++|+|++|.++..                .++..++  ++++|++|++++|.....+  .+.++++|++|
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            44577899999999999988652                1455566  8999999999999754443  35567899999


Q ss_pred             EecccCCCcce--e--Ee-------ecceeeEEEEeecCCC-cee--eccccccccceeecccccCHHHHHHHhccCCcc
Q 018344          111 KLDSNRCGLER--V--YI-------NGVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (357)
Q Consensus       111 ~l~~c~~~l~~--~--~~-------~~p~L~~L~l~~~~~~-~~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  176 (357)
                      ++++|. .+..  +  .+       .+++|++|+++++.+. ...  .++++++|+.|++++|.+++. ++ .+..+++|
T Consensus       279 ~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L  355 (636)
T 4eco_A          279 NVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKL  355 (636)
T ss_dssp             ECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEE
T ss_pred             ECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCC
Confidence            999986 2221  1  11       1378999999885432 123  577888899999988887532 33 56777888


Q ss_pred             ceeeccccccccccccc---ccc-ccEEEcccccccccc
Q 018344          177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEF  211 (357)
Q Consensus       177 ~~L~l~~~~~l~~l~~~---~~~-L~~L~l~~c~~L~~~  211 (357)
                      +.|+++++. +..++..   .++ |++|+++++ .++++
T Consensus       356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~l~~l  392 (636)
T 4eco_A          356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYI  392 (636)
T ss_dssp             SEEECCSSE-EEECCTTSEEECTTCCEEECCSS-CCSSC
T ss_pred             CEEECCCCc-cccccHhhhhhcccCcEEEccCC-cCccc
Confidence            888886554 3344432   345 888888877 45543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.58  E-value=7e-16  Score=149.76  Aligned_cols=80  Identities=19%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .+++++  ++++....+ |..+.++++|++|++++|.+..  |..+.++++|++|+|++|.++.. .+..++++++|++|
T Consensus        27 ~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  103 (549)
T 2z81_A           27 AMKSLD--LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL  103 (549)
T ss_dssp             TCCEEE--CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred             CccEEE--CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence            344444  455545555 3456667777777777776655  34566777777777777766322 12335566677777


Q ss_pred             eeecCC
Q 018344           89 NINNCP   94 (357)
Q Consensus        89 ~L~~c~   94 (357)
                      ++++|.
T Consensus       104 ~Ls~n~  109 (549)
T 2z81_A          104 NLMGNP  109 (549)
T ss_dssp             ECTTCC
T ss_pred             ECCCCc
Confidence            776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.57  E-value=1.1e-15  Score=150.21  Aligned_cols=74  Identities=15%  Similarity=0.065  Sum_probs=37.4

Q ss_pred             cCCcceec-CcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           21 GCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        21 ~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      +++....+ |..+.++++|++|++++|.+..  +..+.++++|++|++++|.+....++..++++++|++|++++|.
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            33334444 4444455555555555554433  23455555555555555554322233345556666666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.57  E-value=4.6e-14  Score=136.93  Aligned_cols=141  Identities=18%  Similarity=0.186  Sum_probs=93.2

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .|.+......+|..+.  ++|++|++++|.+..  |..+.++++|++|+|++|.++.. .+..++++++|++|++++|..
T Consensus        10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCcc
Confidence            3556667788998765  689999999998765  55788999999999999987432 123467899999999999863


Q ss_pred             CCccC---cCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecC-CCc--eeeccccccccceeecccccC
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYL-EPC--EVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~L~~~~i~  162 (357)
                       +.+.   +.++++|++|++++|...   .......+++|++|++++.. ...  ...+.++++|++|+++++.++
T Consensus        87 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           87 -SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             -CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             -CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence             3322   456678888888877621   11112235566667666643 110  123445555666666555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=4.2e-15  Score=151.55  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             EecCCcceec-CcccccCCCccEEEeeccccCC--CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           19 DVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        19 ~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~--p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      +++++....+ |..+.++++|++|+|++|.+..  |.  .+.++++|++|+|++|.+........++++++|++|++++|
T Consensus        79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            3444444444 5556667777777777766543  22  26667777777777776633222234566777777777765


Q ss_pred             C
Q 018344           94 P   94 (357)
Q Consensus        94 ~   94 (357)
                      .
T Consensus       159 ~  159 (844)
T 3j0a_A          159 Q  159 (844)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=6.7e-15  Score=133.81  Aligned_cols=202  Identities=15%  Similarity=0.239  Sum_probs=149.5

Q ss_pred             hHHHHHHhCC-CeEEEEEecCCcceecCcccccC--CCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHH
Q 018344            3 RCLSYAFASN-VKELKLDVGCCRIYNLPQIVFYL--KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDM   78 (357)
Q Consensus         3 ~~i~~~~~~~-v~~l~l~~~~~~~~~lP~~i~~~--~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l   78 (357)
                      +|-..+.... ++.++  ++.+...  |..+..+  ++++.|+++++.+.. +.....+++|++|++++|.+++..++..
T Consensus        38 ~W~~~~~~~~~~~~l~--l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDESLWQTLD--LTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCSTTSSEEE--CTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCchhheeec--cccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            5766665433 55554  4554322  4555555  899999999988766 4456789999999999999888778888


Q ss_pred             HcCCCCccEEeeecCCCCCcc---CcCCCCCccEEEecccCCCcc-----eeEeecceeeEEEEeec-CCCc---eeecc
Q 018344           79 VAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKVY-LEPC---EVNVS  146 (357)
Q Consensus        79 ~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~-----~~~~~~p~L~~L~l~~~-~~~~---~~~~~  146 (357)
                      +..+++|++|++++|. +...   .+..+++|++|++++|. .+.     .....+|+|++|+++++ .+..   ...+.
T Consensus       114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            9999999999999985 3321   24457899999999995 332     22335789999999886 5441   23356


Q ss_pred             ccc-cccceeeccc--ccCHHHHHHHhccCCccceeeccccccccc--ccc--ccccccEEEccccccccc
Q 018344          147 SCK-NLTHLRLDGL--SITDKWLYNQISELPFLEYLALHYCMKLRS--INI--SSPRLKELVFERCEELVE  210 (357)
Q Consensus       147 ~~~-~L~~L~L~~~--~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~--l~~--~~~~L~~L~l~~c~~L~~  210 (357)
                      .++ +|++|+++++  .+++..++..+.++++|+.|++++|..+..  ++.  ..++|++|++++|..+++
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence            788 9999999998  677777888889999999999998875422  221  258899999999975554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.56  E-value=9.3e-15  Score=138.48  Aligned_cols=299  Identities=13%  Similarity=0.076  Sum_probs=143.3

Q ss_pred             CCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      .++.++  ++++....+ |..+.++++|++|++++|.+..   +..+.++++|++|+|++|.+... .+..++++++|++
T Consensus        31 ~l~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  107 (455)
T 3v47_A           31 HVNYVD--LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV  107 (455)
T ss_dssp             TCCEEE--CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred             ccCEEE--ecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence            344444  344444444 4455667777777777765432   33566667777777776655321 1223455666666


Q ss_pred             EeeecCCCCCc-c---CcCCCCCccEEEecccCC-Cccee--EeecceeeEEEEeecCCCc--eee--------------
Q 018344           88 ININNCPGLKS-L---QLLGLNKLKEIKLDSNRC-GLERV--YINGVNVHSVDIKVYLEPC--EVN--------------  144 (357)
Q Consensus        88 L~L~~c~~l~~-l---~l~~~~~L~~L~l~~c~~-~l~~~--~~~~p~L~~L~l~~~~~~~--~~~--------------  144 (357)
                      |++++|..-.. .   .+..+++|++|++++|.. .....  ...+++|++|+++++.+..  ...              
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            66666643111 1   133445666666666652 11111  1234556666555422110  000              


Q ss_pred             --------------------ccccccccceeecccccCHHHHHHHhc--cCCccceeeccccccccc---------cc--
Q 018344          145 --------------------VSSCKNLTHLRLDGLSITDKWLYNQIS--ELPFLEYLALHYCMKLRS---------IN--  191 (357)
Q Consensus       145 --------------------~~~~~~L~~L~L~~~~i~~~~~~~l~~--~~~~L~~L~l~~~~~l~~---------l~--  191 (357)
                                          +..+++|++|++++|.+++.....+..  ..++|+.|+++++.....         ..  
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                                123356888888888776643333222  135666666654422210         00  


Q ss_pred             ----cccccccEEEccccccccccc----ccCCCcceEEeeeee-eeE----ecccccceeEEEEEEecCCChHHHHHHH
Q 018344          192 ----ISSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF----SSNALALSQTLLCFISHPVDNEWYLKFI  258 (357)
Q Consensus       192 ----~~~~~L~~L~l~~c~~L~~~~----i~~~~L~~~~~~~~~-~~~----~~~~~~L~~~~l~~~~~~~~~~~~~~l~  258 (357)
                          ...++|+.|+++++ .++++.    -..++|+.+...+.. ...    ......|+.++++.+.....      ..
T Consensus       268 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~  340 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DS  340 (455)
T ss_dssp             TTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CG
T ss_pred             ccccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------Ch
Confidence                01245667776666 333321    122344444443322 101    11234566665533211110      02


Q ss_pred             HHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344          259 KLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (357)
Q Consensus       259 ~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l  332 (357)
                      ..+.++++++.|.+..+... ...+..+     ..+++|++|++..+.      +..+.+..+..+|+|++|.+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~-~~~~~~~-----~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIR-ALGDQSF-----LGLPNLKELALDTNQ------LKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCC-EECTTTT-----TTCTTCCEEECCSSC------CSCCCTTTTTTCTTCCEEEC
T ss_pred             hHhcCcccCCEEECCCCccc-ccChhhc-----cccccccEEECCCCc------cccCCHhHhccCCcccEEEc
Confidence            33566777777777554322 1112221     235677777776542      11122334566777887777

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=8.4e-16  Score=151.03  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             ceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEE
Q 018344          127 VNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELV  201 (357)
Q Consensus       127 p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~  201 (357)
                      ++|++|++++..+. ....+.++++|++|++++|.+++. .+..+.++++|+.|++++|.....++.    ..++|++|+
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            45666666553221 113456778888888888877532 234466777888888776643323322    145666666


Q ss_pred             cccc
Q 018344          202 FERC  205 (357)
Q Consensus       202 l~~c  205 (357)
                      ++++
T Consensus       357 l~~n  360 (606)
T 3t6q_A          357 LSHD  360 (606)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.56  E-value=4.2e-15  Score=145.58  Aligned_cols=170  Identities=15%  Similarity=0.166  Sum_probs=107.5

Q ss_pred             cCCCccEEEeeccccCC--CCCcc-CCCCCceEEeecc-ccCHHHHHHHHcCCCCccEEeeecCCCCCc-----cC--cC
Q 018344           34 YLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFV-HVDDEVIRDMVAGCPLIEYININNCPGLKS-----LQ--LL  102 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--p~~~~-~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-----l~--l~  102 (357)
                      .+++|++|+|++|.+..  +..+. .+++|++|+|++| .++...++.+..+|++|++|++++|. ++.     +.  ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence            57789999998887554  22333 6889999999888 45777778888888999999998875 111     10  11


Q ss_pred             CCCCccEEEecccC--C---CcceeEeecceeeEEEEeecC---------------------------------------
Q 018344          103 GLNKLKEIKLDSNR--C---GLERVYINGVNVHSVDIKVYL---------------------------------------  138 (357)
Q Consensus       103 ~~~~L~~L~l~~c~--~---~l~~~~~~~p~L~~L~l~~~~---------------------------------------  138 (357)
                      .+++|++|++++|.  .   .+..+...+|+|++|++.+..                                       
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            33566666666653  0   011111123455555544310                                       


Q ss_pred             --------------CC---ceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---ccccccc
Q 018344          139 --------------EP---CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLK  198 (357)
Q Consensus       139 --------------~~---~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~~~~~L~  198 (357)
                                    ..   .......+++|++|+++++.+++..+..++.++++|+.|++++|.....+.   ...++|+
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence                          00   000112567899999999998888788888999999999998772222222   2267899


Q ss_pred             EEEccc
Q 018344          199 ELVFER  204 (357)
Q Consensus       199 ~L~l~~  204 (357)
                      +|++.+
T Consensus       342 ~L~L~~  347 (594)
T 2p1m_B          342 ELRVFP  347 (594)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            998843

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=4.9e-15  Score=137.68  Aligned_cols=145  Identities=15%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             CCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      +++.+++  +++....+|..+ ..+++|++|++++|.+..  +..+.++++|++|+|++|.+... .+..++.+++|++|
T Consensus        46 ~l~~l~l--~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           46 NQKIVTF--KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVL  122 (390)
T ss_dssp             CCSEEEE--ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CceEEEe--cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEE
Confidence            3444443  444455666654 346777777777766544  33566777777777777765321 12234566777777


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      ++++|. ++.+.   +.++++|++|++++|.. ... ......++|++|+++++.+.. ..+..+++|+.++++++.+
T Consensus       123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCC
T ss_pred             ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccc
Confidence            777764 33332   23456677777776652 111 111234566666666543321 1233444454444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=2.1e-14  Score=133.49  Aligned_cols=255  Identities=17%  Similarity=0.123  Sum_probs=147.4

Q ss_pred             CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      +.++.++  ++++....+|. .+..+++|++|++++|.+..  |..+.++++|++|+|++|.++.- ...++..+++|++
T Consensus        69 ~~L~~L~--L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLN--LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccCcEEE--CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence            4566665  46666667775 66778999999999988766  44678899999999999977421 1223567899999


Q ss_pred             EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc------------------eeecc
Q 018344           88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC------------------EVNVS  146 (357)
Q Consensus        88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~------------------~~~~~  146 (357)
                      |++++|.. +.+   .+.++++|++|++++|.. ...-....++|+.+++++.....                  .....
T Consensus       146 L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          146 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             EECCSSCC-CBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             EECCCCcc-CccChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            99998763 322   245668889999888862 11111124455555554432220                  01112


Q ss_pred             ccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc---ccccccEEEcccccccccccccCCCcceEEe
Q 018344          147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFELDTPNLSIFKC  223 (357)
Q Consensus       147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~  223 (357)
                      ..++|+.|+++++.+++.   ..+..+++|+.|+++++..-...+.   ..++|++|+++++ .++.+...         
T Consensus       224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---------  290 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY---------  290 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECS---------
T ss_pred             ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcc---------
Confidence            234566666666666442   2355666777777655432211111   1455666666665 34432211         


Q ss_pred             eeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344          224 FNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS  303 (357)
Q Consensus       224 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~  303 (357)
                             ....+.|+.++++.+.....       ...+..+++++.|.+..+....  +       ....+++|++|++.
T Consensus       291 -------~~~l~~L~~L~L~~n~l~~~-------~~~~~~l~~L~~L~L~~N~i~~--~-------~~~~~~~L~~L~l~  347 (390)
T 3o6n_A          291 -------GQPIPTLKVLDLSHNHLLHV-------ERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNLTLS  347 (390)
T ss_dssp             -------SSCCTTCCEEECCSSCCCCC-------GGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEEECC
T ss_pred             -------cCCCCCCCEEECCCCcceec-------CccccccCcCCEEECCCCccce--e-------CchhhccCCEEEcC
Confidence                   01234555555533221111       1224567899998887654322  1       23356889999998


Q ss_pred             Eec
Q 018344          304 VLS  306 (357)
Q Consensus       304 ~~~  306 (357)
                      +++
T Consensus       348 ~N~  350 (390)
T 3o6n_A          348 HND  350 (390)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=3.5e-15  Score=146.46  Aligned_cols=139  Identities=14%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             ecCCcceecCcccc-cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCC
Q 018344           20 VGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (357)
Q Consensus        20 ~~~~~~~~lP~~i~-~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l   96 (357)
                      ++++....+|..++ ++++|++|+|++|.+..  |..+.++++|++|+|++|.++.. .+..++++++|++|+|++|. +
T Consensus        58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l  135 (597)
T 3oja_B           58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERND-L  135 (597)
T ss_dssp             ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-C
T ss_pred             eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCC-C
Confidence            34444556665543 36677777777766544  33566677777777777665321 12234566677777776664 3


Q ss_pred             CccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           97 KSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        97 ~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      +.++   +.++++|++|++++|.. .... ....+++|++|+++++.+.. ..++.+++|+.|++++|.+
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCC
T ss_pred             CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCcc
Confidence            3332   23456666777666652 1111 11234566666665543321 1233444455555544444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=143.67  Aligned_cols=278  Identities=15%  Similarity=0.106  Sum_probs=180.2

Q ss_pred             CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.|  |++++....++ ..+.++++|++|+|++|.+..  |..+.++++|++|+|++|.++.. ....+.++++|++|
T Consensus        33 ~l~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  109 (477)
T 2id5_A           33 ETRLL--DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL  109 (477)
T ss_dssp             TCSEE--ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred             CCcEE--ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence            45554  55677777775 467779999999999997765  66889999999999999977421 12235678999999


Q ss_pred             eeecCCCCCc--cCcCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccC
Q 018344           89 NINNCPGLKS--LQLLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        89 ~L~~c~~l~~--l~l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      ++++|.....  -.+.++++|++|++++|.. ... .....+++|++|+++++.+..  ...+.++++|+.|+++++.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            9999864221  2345678999999998862 111 112247899999999864431  124678899999999998875


Q ss_pred             HHHHHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc----ccCCCcceEEeeeee-eeE----
Q 018344          163 DKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF----  230 (357)
Q Consensus       163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~----i~~~~L~~~~~~~~~-~~~----  230 (357)
                      +. ....+..+++|+.|++++|..+..++..   ..+|++|++++| +++++.    -..++|+.+...+.. ...    
T Consensus       190 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          190 AI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             EE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             Ee-ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            42 2235678999999999988777665543   348999999988 666544    134556665554432 111    


Q ss_pred             ecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344          231 SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (357)
Q Consensus       231 ~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~  306 (357)
                      ......|+.+++..+.....      ....+.++++|+.|++..+..  ..+++..    ...+++|++|.+.+++
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l--~~~~~~~----~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQL--TTLEESV----FHSVGNLETLILDSNP  331 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCEEECCSSCC--SCCCGGG----BSCGGGCCEEECCSSC
T ss_pred             ccccccCCEEECCCCccceE------CHHHhcCcccCCEEECCCCcC--ceeCHhH----cCCCcccCEEEccCCC
Confidence            11235566666533111110      012345677788877754432  2233321    1234678888887543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.53  E-value=1e-14  Score=140.69  Aligned_cols=99  Identities=13%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .+++++  ++++....+| ..+.++++|++|+|++|.+..  |..+.++++|++|+|++|.++.  ++..  .+++|++|
T Consensus        22 ~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L   95 (520)
T 2z7x_B           22 KTTILN--ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHL   95 (520)
T ss_dssp             TCSEEE--CCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEE
T ss_pred             cccEEE--CCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEE
Confidence            344444  4555555555 345567777777777776654  4466777777777777776641  2221  56777777


Q ss_pred             eeecCCCCC-c--cCcCCCCCccEEEecccC
Q 018344           89 NINNCPGLK-S--LQLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        89 ~L~~c~~l~-~--l~l~~~~~L~~L~l~~c~  116 (357)
                      ++++|..-. .  -.+.++++|++|++++|.
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcc
Confidence            777765321 1  123445667777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.53  E-value=1.4e-14  Score=139.75  Aligned_cols=140  Identities=14%  Similarity=0.091  Sum_probs=106.3

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .+|++++....+|..+.  ++|++|++++|.+.. + ..+.++++|++|+|++|.++.. .+..++++++|++|++++|.
T Consensus         4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence            57788888889998776  899999999998876 3 4688999999999999987532 13456789999999999986


Q ss_pred             CCCccCcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccc--cceeeccccc
Q 018344           95 GLKSLQLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI  161 (357)
Q Consensus        95 ~l~~l~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L--~~L~L~~~~i  161 (357)
                       ++.++...+++|++|++++|...   .+.....+++|++|+++++.+.. ..+..+++|  +.|++++|.+
T Consensus        81 -l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             -CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTT
T ss_pred             -eeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeecccc
Confidence             55554446789999999999731   11223357789999998865542 345566667  8888877766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.52  E-value=1.9e-14  Score=141.35  Aligned_cols=192  Identities=18%  Similarity=0.196  Sum_probs=135.9

Q ss_pred             EEEEecCCcceecCcc-cccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           16 LKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        16 l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      -.++++++....+|.. +..+++|++|++++|.+.. |..+.++++|++|++++|.+... .+..+..+++|++|++++|
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCC
Confidence            3466677777777766 5568999999999998776 77888999999999999977432 1334678899999999998


Q ss_pred             CCCCcc---CcCCCCCccEEEecccCCCccee-----EeecceeeEEEEeecCCCc--eeeccccccccceeecccccCH
Q 018344           94 PGLKSL---QLLGLNKLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        94 ~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      .....+   .+..+++|++|++++|.. ....     ...+++|++|+++++.+..  ...+..+++|+.|++++|.+++
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CcccccchhhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            643232   245678999999998872 2111     2246789999988754321  1356678889999999888754


Q ss_pred             HHHHHHhccCCccceeecccccccccccc---ccccccEEEccccccccc
Q 018344          164 KWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVE  210 (357)
Q Consensus       164 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c~~L~~  210 (357)
                      ...+..+.++++|+.|++++|......+.   ..++|++|++++| .+++
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  463 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPK  463 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGG
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCc
Confidence            33334467888999999976654332222   2578889998888 4543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.52  E-value=2.6e-13  Score=124.36  Aligned_cols=262  Identities=13%  Similarity=0.119  Sum_probs=161.8

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .|.++.....+|..+.  ++|++|++++|.+.. + ..+.++++|++|++++|.++.. .+..+.++++|++|++++|. 
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-  111 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNY-  111 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCc-
Confidence            4556667778887665  478888888887665 3 3678888888888888876431 12335678888888888875 


Q ss_pred             CCccC---cCCCCCccEEEecccCC-Ccce--eEeecceeeEEEEeecC-CCc--eeeccccccccceeecccccCHHHH
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRC-GLER--VYINGVNVHSVDIKVYL-EPC--EVNVSSCKNLTHLRLDGLSITDKWL  166 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~-~l~~--~~~~~p~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~L~~~~i~~~~~  166 (357)
                      ++.+.   +.++++|++|++++|.. .+..  ....+++|++|+++++. ...  ...+.++++|++|++++|.+++. .
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~  190 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-E  190 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-C
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-C
Confidence            33333   44567888888888863 2222  22347788888888752 221  13466788888999988877542 2


Q ss_pred             HHHhccCCccceeeccccccccccccc----cccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEE
Q 018344          167 YNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLL  242 (357)
Q Consensus       167 ~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l  242 (357)
                      +..+..+++|+.|+++++. +..++..    .++|+.|+++++ .++......  +...          .....+...++
T Consensus       191 ~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~--l~~~----------~~~~~l~~l~L  256 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSE--LSTG----------ETNSLIKKFTF  256 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------------------CCCCCCEEEE
T ss_pred             HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccc--cccc----------cccchhhcccc
Confidence            4456778889999887654 3333322    577888888887 455432111  0000          00112233333


Q ss_pred             EEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344          243 CFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (357)
Q Consensus       243 ~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~  306 (357)
                      ....  ..+.-...+.+.+..+++++.|.+..+...  .+|+..    ...+++|++|.+.+++
T Consensus       257 ~~~~--l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~----~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          257 RNVK--ITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGI----FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ESCB--CCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTT----TTTCTTCCEEECCSSC
T ss_pred             cccc--ccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHH----HhcCCCCCEEEeeCCC
Confidence            2211  111112355667888999999888665433  444432    1245789999998664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.52  E-value=2.6e-14  Score=129.70  Aligned_cols=171  Identities=22%  Similarity=0.337  Sum_probs=133.3

Q ss_pred             CCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc--CcCCCCCccEEE
Q 018344           35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIK  111 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l--~l~~~~~L~~L~  111 (357)
                      ..+++.|+|+++.+.. |..+.++++|++|+|++|.+.  .++..++.+++|++|++++|. ++.+  .+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence            4689999999998877 777888999999999999876  345556889999999999986 3343  345678999999


Q ss_pred             ecccCCCccee------------EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccce
Q 018344          112 LDSNRCGLERV------------YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (357)
Q Consensus       112 l~~c~~~l~~~------------~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  178 (357)
                      +++|. ....+            .-.+++|++|+++++.+. ....+.++++|++|++++|.+++  ++..+.++++|+.
T Consensus       157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~  233 (328)
T 4fcg_A          157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE
T ss_pred             CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE
Confidence            99987 33222            113889999999985432 12457888999999999999864  3445788999999


Q ss_pred             eeccccccccccccc---cccccEEEcccccccccc
Q 018344          179 LALHYCMKLRSINIS---SPRLKELVFERCEELVEF  211 (357)
Q Consensus       179 L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~  211 (357)
                      |++++|.....++..   .++|+.|++++|..+..+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL  269 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence            999988877766653   578999999998655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.52  E-value=1.4e-14  Score=137.46  Aligned_cols=319  Identities=14%  Similarity=0.096  Sum_probs=185.3

Q ss_pred             HHHhCCCeEEEEEecCCc---ceecCcccccCCCccEEEeeccccCC--CC-CccCCC----CCceEEeeccccCH---H
Q 018344            7 YAFASNVKELKLDVGCCR---IYNLPQIVFYLKSIYVLDFEFCKLEP--PR-STVTLF----SLRKLCLSFVHVDD---E   73 (357)
Q Consensus         7 ~~~~~~v~~l~l~~~~~~---~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~-~~~~l~----~L~~L~L~~~~~~~---~   73 (357)
                      +..-+.++.+++.-..-.   ...+|..+..+++|++|+|++|.+..  +. ....++    +|++|+|++|.+++   .
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            334467787776533311   12566667778888888888877543  11 122344    68888888888754   3


Q ss_pred             HHHHHHcCCCCccEEeeecCCCCCccC--------cCCCCCccEEEecccCCCc------ceeEeecceeeEEEEeecCC
Q 018344           74 VIRDMVAGCPLIEYININNCPGLKSLQ--------LLGLNKLKEIKLDSNRCGL------ERVYINGVNVHSVDIKVYLE  139 (357)
Q Consensus        74 ~l~~l~~~~~~L~~L~L~~c~~l~~l~--------l~~~~~L~~L~l~~c~~~l------~~~~~~~p~L~~L~l~~~~~  139 (357)
                      .+...+..+++|++|++++|. +....        ....++|++|++++|...-      ......+++|++|+++++.+
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            556667788888888888876 32110        1112478888888886211      11111357888888887543


Q ss_pred             Cc--eeecc-----ccccccceeecccccCHH---HHHHHhccCCccceeecccccccccc-----c----cccccccEE
Q 018344          140 PC--EVNVS-----SCKNLTHLRLDGLSITDK---WLYNQISELPFLEYLALHYCMKLRSI-----N----ISSPRLKEL  200 (357)
Q Consensus       140 ~~--~~~~~-----~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~~l~~l-----~----~~~~~L~~L  200 (357)
                      ..  ...+.     ..++|++|++++|.+++.   .+...+..+++|+.|++++|. +...     .    ...++|++|
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEE
Confidence            21  01111     234788999998888763   356667788999999987664 3221     1    125678888


Q ss_pred             Eccccccccccc--------ccCCCcceEEeeeee----e--eEe----cccccceeEEEEEEecCCChHHHHHHHHHHh
Q 018344          201 VFERCEELVEFE--------LDTPNLSIFKCFNYV----E--SFS----SNALALSQTLLCFISHPVDNEWYLKFIKLLA  262 (357)
Q Consensus       201 ~l~~c~~L~~~~--------i~~~~L~~~~~~~~~----~--~~~----~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~  262 (357)
                      ++++| .+++..        -..++|+.+...+..    .  .+.    .+...++.++++.+..... . ...+...+.
T Consensus       262 ~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~-~~~l~~~l~  338 (461)
T 1z7x_W          262 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-C-CSHFSSVLA  338 (461)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-G-HHHHHHHHH
T ss_pred             ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH-H-HHHHHHHHh
Confidence            88888 666521        124566666554432    0  000    0124677666643221111 1 134566777


Q ss_pred             hcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEee
Q 018344          263 RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (357)
Q Consensus       263 ~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l~  333 (357)
                      .++++++|.+..+....... ..+.+......++|++|.+.++. .... ....++..+..+|+|+.|.+.
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~-~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCD-VSDS-SCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSC-CCHH-HHHHHHHHHHHCCCCCEEECC
T ss_pred             hCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCC-CChh-hHHHHHHHHHhCCCccEEECC
Confidence            88889988886654332211 11111111124678888887653 2222 233455566678888888883

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=145.75  Aligned_cols=144  Identities=16%  Similarity=0.128  Sum_probs=75.4

Q ss_pred             EEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344           15 ELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN   92 (357)
Q Consensus        15 ~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~   92 (357)
                      ...+|.+......+|.   -.+++++|+|++|.+..  |..+.++++|++|+|++|......-+..++++++|++|+|++
T Consensus         6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            3445555555666665   23566666666665543  445666666666666666331111122345666666666666


Q ss_pred             CCCCCcc---CcCCCCCccEEEecccCCC---cce-eEeecceeeEEEEeecCCCc---eeeccccccccceeecccccC
Q 018344           93 CPGLKSL---QLLGLNKLKEIKLDSNRCG---LER-VYINGVNVHSVDIKVYLEPC---EVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        93 c~~l~~l---~l~~~~~L~~L~l~~c~~~---l~~-~~~~~p~L~~L~l~~~~~~~---~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      |.. ..+   .+.++++|++|++++|...   ... ....+++|++|+++++.+..   ...++++++|++|++++|.++
T Consensus        83 N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            542 222   2344566666666666521   111 12235566666666643211   123556666666666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=6e-14  Score=137.63  Aligned_cols=255  Identities=17%  Similarity=0.123  Sum_probs=148.9

Q ss_pred             CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..++.|+  ++++....+|+ .+..+++|++|+|++|.+..  |..+.++++|++|+|++|.++.- .+.+++++++|++
T Consensus        75 ~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  151 (597)
T 3oja_B           75 RQVELLN--LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEE--CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence            4555554  56666667765 67779999999999988766  44678999999999999977421 1233578899999


Q ss_pred             EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc------------------eeecc
Q 018344           88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC------------------EVNVS  146 (357)
Q Consensus        88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~------------------~~~~~  146 (357)
                      |++++|.. ..+   .+.++++|++|++++|.. ........|+|+.++++++.+..                  .....
T Consensus       152 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          152 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             EECCSSCC-CBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             EEeeCCcC-CCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            99998863 322   345668899999988862 11111124455555554432220                  00111


Q ss_pred             ccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccccccccccccCCCcceEEe
Q 018344          147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFELDTPNLSIFKC  223 (357)
Q Consensus       147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~  223 (357)
                      ..++|+.|++++|.+++.   ..+..+++|+.|++++|......+..   .++|+.|+++++ .++.+...         
T Consensus       230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---------  296 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY---------  296 (597)
T ss_dssp             CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECS---------
T ss_pred             cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcc---------
Confidence            124566666666666542   34566777777777654322222211   456666666665 44432211         


Q ss_pred             eeeeeeEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEE
Q 018344          224 FNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFS  303 (357)
Q Consensus       224 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~  303 (357)
                             ....+.|+.++++.+.....       ...+..+++|+.|.+..+....  +       ....+++|+.|.+.
T Consensus       297 -------~~~l~~L~~L~Ls~N~l~~i-------~~~~~~l~~L~~L~L~~N~l~~--~-------~~~~~~~L~~L~l~  353 (597)
T 3oja_B          297 -------GQPIPTLKVLDLSHNHLLHV-------ERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNLTLS  353 (597)
T ss_dssp             -------SSCCTTCCEEECCSSCCCCC-------GGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEEECC
T ss_pred             -------cccCCCCcEEECCCCCCCcc-------CcccccCCCCCEEECCCCCCCC--c-------ChhhcCCCCEEEee
Confidence                   11233555555533221111       2224567889998886654322  1       12346789999998


Q ss_pred             Eec
Q 018344          304 VLS  306 (357)
Q Consensus       304 ~~~  306 (357)
                      +++
T Consensus       354 ~N~  356 (597)
T 3oja_B          354 HND  356 (597)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=1.2e-14  Score=142.42  Aligned_cols=195  Identities=15%  Similarity=0.155  Sum_probs=128.8

Q ss_pred             CCCeEEEEEecCCccee-----cCcccccCCCccEEEeeccccCC------CCCccCCCCCceEEeeccccCHHHHHHHH
Q 018344           11 SNVKELKLDVGCCRIYN-----LPQIVFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMV   79 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~-----lP~~i~~~~~L~~L~Ls~~~~~~------p~~~~~l~~L~~L~L~~~~~~~~~l~~l~   79 (357)
                      +.+++|++  +.+....     ++.....+++|++|+++++.+..      +..+.++++|++|++++|.+..  ++..+
T Consensus       164 ~~L~~L~L--~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~  239 (592)
T 3ogk_B          164 RKIKTLLM--EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF  239 (592)
T ss_dssp             TTCSEEEC--TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred             CCCCEEEC--ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence            56777765  4432221     33344568899999999887652      2234578999999999986643  56778


Q ss_pred             cCCCCccEEeeecCCC----------------CCccC------------cCCCCCccEEEecccCCCcc---eeEeecce
Q 018344           80 AGCPLIEYININNCPG----------------LKSLQ------------LLGLNKLKEIKLDSNRCGLE---RVYINGVN  128 (357)
Q Consensus        80 ~~~~~L~~L~L~~c~~----------------l~~l~------------l~~~~~L~~L~l~~c~~~l~---~~~~~~p~  128 (357)
                      ..+++|++|+++.+..                ++.+.            +..+++|++|++++|.....   .+...+|+
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            8889999999874321                11111            12347899999999872111   11235789


Q ss_pred             eeEEEEeecCCC--ceeeccccccccceeec-----------ccccCHHHHHHHhccCCccceeecccccccccc-----
Q 018344          129 VHSVDIKVYLEP--CEVNVSSCKNLTHLRLD-----------GLSITDKWLYNQISELPFLEYLALHYCMKLRSI-----  190 (357)
Q Consensus       129 L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~-----------~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l-----  190 (357)
                      |++|++.+....  ......++++|++|+++           .+.+++..+..+..++++|+.|++ +|..+...     
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l  398 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESI  398 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHH
Confidence            999999742111  11223567889999999           367877777888888999999999 55555321     


Q ss_pred             ccccccccEEEccc---cccccc
Q 018344          191 NISSPRLKELVFER---CEELVE  210 (357)
Q Consensus       191 ~~~~~~L~~L~l~~---c~~L~~  210 (357)
                      ....++|++|++..   |..+++
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSS
T ss_pred             HhhCCCCcEEEEeecCCCccccC
Confidence            12267899999974   445554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=3.5e-14  Score=128.88  Aligned_cols=277  Identities=14%  Similarity=0.053  Sum_probs=141.5

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      +++++.....+|..+.  +++++|++++|.+.. + ..+.++++|++|+|++|.++.. .+..+..+++|++|++++|. 
T Consensus        36 l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-  111 (330)
T 1xku_A           36 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-  111 (330)
T ss_dssp             EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCc-
Confidence            4455555666776553  578888888877665 3 3577788888888888766321 12335677888888888765 


Q ss_pred             CCccCcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCC----ceeeccccccccceeecccccCHHHHHHH
Q 018344           96 LKSLQLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEP----CEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++.++..-.++|++|++++|... ... ....+++|++|++++....    ....+.++++|+.|+++++.+++  ++. 
T Consensus       112 l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~-  188 (330)
T 1xku_A          112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQ-  188 (330)
T ss_dssp             CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCS-
T ss_pred             CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCc-
Confidence            44443333367888888777521 110 1123456666666553221    01234455666666666665532  111 


Q ss_pred             hccCCccceeeccccccccccc-c---ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEE
Q 018344          170 ISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFI  245 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~-~---~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~  245 (357)
                       ...++|+.|+++++. +..+. .   ..++|++|+++++ .++++....               ......++.++++.+
T Consensus       189 -~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---------------~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          189 -GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS---------------LANTPHLRELHLNNN  250 (330)
T ss_dssp             -SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTT---------------GGGSTTCCEEECCSS
T ss_pred             -cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhh---------------ccCCCCCCEEECCCC
Confidence             112556666665443 22221 1   1345566666555 333321000               011234444444321


Q ss_pred             ecCCChHHHHHHHHHHhhcccccceeEEeeccccceeccccccc--CCCCCCCcceEEEEEeccchhhhHHHHHHHHhhh
Q 018344          246 SHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI--LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWI  323 (357)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~--~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~  323 (357)
                      ....       +...+..+++++.|.+..+..  ..++......  .......++.|.+.+++    ...+.+.+.-..+
T Consensus       251 ~l~~-------lp~~l~~l~~L~~L~l~~N~i--~~~~~~~f~~~~~~~~~~~l~~l~l~~N~----~~~~~i~~~~f~~  317 (330)
T 1xku_A          251 KLVK-------VPGGLADHKYIQVVYLHNNNI--SAIGSNDFCPPGYNTKKASYSGVSLFSNP----VQYWEIQPSTFRC  317 (330)
T ss_dssp             CCSS-------CCTTTTTCSSCCEEECCSSCC--CCCCTTSSSCSSCCTTSCCCSEEECCSSS----SCGGGSCGGGGTT
T ss_pred             cCcc-------CChhhccCCCcCEEECCCCcC--CccChhhcCCcccccccccccceEeecCc----ccccccCcccccc
Confidence            1111       112245667777777754432  2233222111  11224567778777553    1123344455677


Q ss_pred             CCCCCeeEe
Q 018344          324 TPHAETLSI  332 (357)
Q Consensus       324 ~p~le~L~l  332 (357)
                      +++++.+.+
T Consensus       318 ~~~l~~l~L  326 (330)
T 1xku_A          318 VYVRAAVQL  326 (330)
T ss_dssp             CCCGGGEEC
T ss_pred             ccceeEEEe
Confidence            778887776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.50  E-value=9.2e-15  Score=138.69  Aligned_cols=305  Identities=16%  Similarity=0.149  Sum_probs=177.6

Q ss_pred             EEecCCcceecC--cccccCCCccEEEeeccccCC------CCCccCCCCCceEEeeccccCHHHHHHHHcCCC----Cc
Q 018344           18 LDVGCCRIYNLP--QIVFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP----LI   85 (357)
Q Consensus        18 l~~~~~~~~~lP--~~i~~~~~L~~L~Ls~~~~~~------p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~----~L   85 (357)
                      +|++++.....+  ..+..+++|++|++++|.+..      +..+..+++|++|+|++|.+++..+..+...++    +|
T Consensus         8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L   87 (461)
T 1z7x_W            8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI   87 (461)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred             hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCce
Confidence            444554433332  225568899999999998663      234667899999999999887777777777666    79


Q ss_pred             cEEeeecCCCCCc-------cCcCCCCCccEEEecccCCC---cceeE----eecceeeEEEEeecCCCc------eeec
Q 018344           86 EYININNCPGLKS-------LQLLGLNKLKEIKLDSNRCG---LERVY----INGVNVHSVDIKVYLEPC------EVNV  145 (357)
Q Consensus        86 ~~L~L~~c~~l~~-------l~l~~~~~L~~L~l~~c~~~---l~~~~----~~~p~L~~L~l~~~~~~~------~~~~  145 (357)
                      ++|++++|. ++.       -.+..+++|++|++++|...   ...+.    ...++|++|+++++.+..      ...+
T Consensus        88 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           88 QKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            999999986 332       12446689999999998721   11111    113479999998854431      1234


Q ss_pred             cccccccceeecccccCHHHHHHHh----ccCCccceeecccccccc----cccc---ccccccEEEcccccccccccc-
Q 018344          146 SSCKNLTHLRLDGLSITDKWLYNQI----SELPFLEYLALHYCMKLR----SINI---SSPRLKELVFERCEELVEFEL-  213 (357)
Q Consensus       146 ~~~~~L~~L~L~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~l~----~l~~---~~~~L~~L~l~~c~~L~~~~i-  213 (357)
                      ..+++|++|++++|.+++.....+.    ...++|+.|++++|.--.    .++.   ..++|++|++++| .+++..+ 
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~  245 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA  245 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence            5678899999999998765443333    246799999998764321    1222   2578999999998 5654321 


Q ss_pred             --------cCCCcceEEeeeee--e-----eEe--cccccceeEEEEEEecCCChHHHHHHHHHHh-hcccccceeEEee
Q 018344          214 --------DTPNLSIFKCFNYV--E-----SFS--SNALALSQTLLCFISHPVDNEWYLKFIKLLA-RFNLCSNVLNLQC  275 (357)
Q Consensus       214 --------~~~~L~~~~~~~~~--~-----~~~--~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~-~l~~lk~L~l~~~  275 (357)
                              ..++++.+...+..  .     +..  .....++.++++.+...  ......+.+.+. ..++++.|.+..+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH--HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc--hHHHHHHHHHhccCCccceeeEcCCC
Confidence                    24556655554332  0     000  11345666655321110  000011222221 2357777777655


Q ss_pred             ccccce---ecccccccCCCCCCCcceEEEEEeccchhhhHHHHHHHHhhhCCCCCeeEe
Q 018344          276 NHEAVL---IPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (357)
Q Consensus       276 ~~~~~~---~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~~p~le~L~l  332 (357)
                      ......   ++..+     ...++|++|++..+. ........+...+-..+|+|++|.+
T Consensus       324 ~l~~~~~~~l~~~l-----~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          324 SFTAACCSHFSSVL-----AQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             CCBGGGHHHHHHHH-----HHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CCchHHHHHHHHHH-----hhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEEC
Confidence            432211   11111     123678888887553 2222222222333334678888888

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.49  E-value=2e-15  Score=143.10  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=105.6

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++........+|. +  .++|++|+|++|.+..  |..+.++++|++|+|++|.+.....+..+.++++|++|++++|.
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            45666667788887 3  3789999999998765  56789999999999999976322223346789999999999987


Q ss_pred             CCCc--cCcCCCCCccEEEecccCCC---cce-eEeecceeeEEEEeecCCCc--eee-ccccccccceeecccccCH
Q 018344           95 GLKS--LQLLGLNKLKEIKLDSNRCG---LER-VYINGVNVHSVDIKVYLEPC--EVN-VSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        95 ~l~~--l~l~~~~~L~~L~l~~c~~~---l~~-~~~~~p~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~L~~~~i~~  163 (357)
                      .-..  -.+.++++|++|++++|...   ... ....+++|++|+++++.+..  ... +.++++|++|++++|.+++
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            4222  24566799999999999731   111 12247899999999854431  122 6788999999999988754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.48  E-value=6.5e-14  Score=137.23  Aligned_cols=254  Identities=16%  Similarity=0.042  Sum_probs=166.0

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      .+++.++  ++++....+|..+.  ++|++|++++|.+.. |.   .+++|++|+|++|.++.  ++.   .+++|++|+
T Consensus        40 ~~l~~L~--ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLN--VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEE--CCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEE
T ss_pred             CCCcEEE--ecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEE
Confidence            3455554  56777789998776  799999999998876 43   68999999999998742  222   789999999


Q ss_pred             eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      +++|. ++.++. .+++|+.|++++|.  +..+....++|++|+++++.+..  .-..+++|+.|++++|.++.  ++  
T Consensus       108 Ls~N~-l~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~--l~--  177 (622)
T 3g06_A          108 IFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTS--LP--  177 (622)
T ss_dssp             ECSCC-CCCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSC--CC--
T ss_pred             CcCCc-CCCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCC--Cc--
Confidence            99986 444443 45789999999886  22233345899999998865431  01234678899999888854  22  


Q ss_pred             hccCCccceeeccccccccccccccccccEEEcccccccccccccCCCcceEEeeeee-eeEecccccceeEEEEEEecC
Q 018344          170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV-ESFSSNALALSQTLLCFISHP  248 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~  248 (357)
                       ..+++|+.|++++| .+..++...++|+.|.+++| .++.+.-..++|..+...+.. ..+......|+.++++.+...
T Consensus       178 -~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          178 -MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT  254 (622)
T ss_dssp             -CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             -ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence             56788999999654 46666666788889988887 566544333455555544432 111122345666655432111


Q ss_pred             CChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344          249 VDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (357)
Q Consensus       249 ~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~  306 (357)
                                .+-..+++++.|++..+...  .+|+.+.     .+++|+.|.+.+++
T Consensus       255 ----------~lp~~~~~L~~L~Ls~N~L~--~lp~~l~-----~l~~L~~L~L~~N~  295 (622)
T 3g06_A          255 ----------SLPMLPSGLLSLSVYRNQLT--RLPESLI-----HLSSETTVNLEGNP  295 (622)
T ss_dssp             ----------CCCCCCTTCCEEECCSSCCC--SCCGGGG-----GSCTTCEEECCSCC
T ss_pred             ----------cCCcccccCcEEeCCCCCCC--cCCHHHh-----hccccCEEEecCCC
Confidence                      11114567777777654333  4454333     35678888887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=8.3e-14  Score=132.03  Aligned_cols=181  Identities=17%  Similarity=0.074  Sum_probs=90.9

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++..+.....+|..+.  +++++|+|++|.+..  +..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|. 
T Consensus        59 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~-  134 (452)
T 3zyi_A           59 VVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNW-  134 (452)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCc-
Confidence            4444455556665543  467777777766544  44566677777777777655321 11234556677777776654 


Q ss_pred             CCccC---cCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeec-CCCc--eeeccccccccceeecccccCHHHHH
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVY-LEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      ++.+.   +.++++|++|++++|... +.. ....+++|++|++++. ....  ...+.++++|+.|++++|.+++-  +
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c
Confidence            33222   334566666666666521 000 1113456666666552 1110  01244555666666666655331  1


Q ss_pred             HHhccCCccceeecccccccccccc---ccccccEEEcccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERC  205 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~~---~~~~L~~L~l~~c  205 (357)
                       .+..+++|+.|+++++......+.   ..++|+.|+++++
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence             144555666666654332111111   1345555655555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.47  E-value=1.9e-13  Score=122.91  Aligned_cols=184  Identities=17%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..+++++  ++++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.++.-  + .+..+++|++|++
T Consensus        41 ~~L~~L~--l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLS--AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred             CCcCEEE--eeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence            3455544  3444455555 4566777777777777665522266777777777777766321  2 2556777777777


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++|..-..-.+..+++|++|++++|.. .... ...+++|++|+++++.+.....+..+++|+.|++++|.+++-.  . 
T Consensus       115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-  190 (308)
T 1h6u_A          115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--P-  190 (308)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh--h-
Confidence            776532222344556777777776652 1111 1234566666666543321112455566666666666654311  1 


Q ss_pred             hccCCccceeeccccccccccccc--cccccEEEcccc
Q 018344          170 ISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERC  205 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c  205 (357)
                      +..+++|+.|++++|. +..++..  .++|+.|+++++
T Consensus       191 l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEE
T ss_pred             hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCC
Confidence            4556666666665443 2222211  345555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=3.4e-14  Score=129.14  Aligned_cols=276  Identities=13%  Similarity=0.052  Sum_probs=145.6

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      +++++.....+|..+.  ++|++|++++|.+..  |..+.++++|++|++++|.++.. .+..+..+++|++|++++|. 
T Consensus        38 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-  113 (332)
T 2ft3_A           38 VQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH-  113 (332)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-
T ss_pred             EECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-
Confidence            3445555666776553  467777777776554  34667777788888877766321 12335567777888877765 


Q ss_pred             CCccCcCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCC---c-eeeccccccccceeecccccCHHHHHHH
Q 018344           96 LKSLQLLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEP---C-EVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~---~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++.++..-.++|++|++++|.. .... ....+++|++|++++..+.   . ...+..+ +|+.|+++++.+++  ++. 
T Consensus       114 l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~-  189 (332)
T 2ft3_A          114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPK-  189 (332)
T ss_dssp             CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCS-
T ss_pred             CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCc-
Confidence            3343332236777777777752 1111 1223566777777664321   0 1223333 57777777666643  111 


Q ss_pred             hccCCccceeecccccccccccc----ccccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEE
Q 018344          170 ISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFI  245 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~  245 (357)
                       .-.++|+.|+++++. +..++.    ..++|+.|+++++ .++++.-.               .......++.++++.+
T Consensus       190 -~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~---------------~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          190 -DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENG---------------SLSFLPTLRELHLDNN  251 (332)
T ss_dssp             -SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT---------------GGGGCTTCCEEECCSS
T ss_pred             -cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChh---------------HhhCCCCCCEEECCCC
Confidence             112567777775443 222221    1355666666665 34332100               0011234444444321


Q ss_pred             ecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccC--CCCCCCcceEEEEEeccchhhhHHHHHHHHhhh
Q 018344          246 SHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREIL--CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWI  323 (357)
Q Consensus       246 ~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~--~p~~~~L~~L~l~~~~~~~~~~~~~~l~~Ll~~  323 (357)
                      ....       +...+..+++++.|.+......  .++.......  ...+..|++|.+.+++    ...+.+.+....+
T Consensus       252 ~l~~-------lp~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~~~~~~~l~~L~l~~N~----~~~~~~~~~~~~~  318 (332)
T 2ft3_A          252 KLSR-------VPAGLPDLKLLQVVYLHTNNIT--KVGVNDFCPVGFGVKRAYYNGISLFNNP----VPYWEVQPATFRC  318 (332)
T ss_dssp             CCCB-------CCTTGGGCTTCCEEECCSSCCC--BCCTTSSSCSSCCSSSCCBSEEECCSSS----SCGGGSCGGGGTT
T ss_pred             cCee-------cChhhhcCccCCEEECCCCCCC--ccChhHccccccccccccccceEeecCc----ccccccCcccccc
Confidence            1111       1222567788888887654332  2332211111  1124678899988654    1122344566788


Q ss_pred             CCCCCeeEe
Q 018344          324 TPHAETLSI  332 (357)
Q Consensus       324 ~p~le~L~l  332 (357)
                      +++|+.|.+
T Consensus       319 l~~L~~l~l  327 (332)
T 2ft3_A          319 VTDRLAIQF  327 (332)
T ss_dssp             BCCSTTEEC
T ss_pred             cchhhhhhc
Confidence            999999888

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=1.8e-13  Score=129.77  Aligned_cols=182  Identities=19%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..++.++  ++++....+|  +..+++|++|++++|.+... .+.++++|++|++++|.++.-  +  ++.+++|++|++
T Consensus        64 ~~L~~L~--Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLI--CTSNNITTLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEE--CCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEE--ccCCcCCeEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence            3455554  4566666666  67788999999999887763 377889999999999977432  2  677888999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++|. ++.+++..+++|++|++++|. ....+.+ .+++|++|++++..+.. ..+..+++|+.|++++|.+++.    -
T Consensus       135 ~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~----~  207 (457)
T 3bz5_A          135 ARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL----D  207 (457)
T ss_dssp             TTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC----C
T ss_pred             CCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee----c
Confidence            8875 555667777888888888885 3333322 35677777777754332 2255667777777777766542    1


Q ss_pred             hccCCccceeeccccccccccccc-cccccEEEccccccccc
Q 018344          170 ISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVE  210 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~  210 (357)
                      ++.+++|+.|+++++ .+..++.. .++|+.|+++++ .++.
T Consensus       208 l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N-~l~~  247 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVN-PLTE  247 (457)
T ss_dssp             CTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSS-CCSC
T ss_pred             cccCCCCCEEECcCC-cccccCccccCCCCEEEeeCC-cCCC
Confidence            566677777777544 33334432 456666666665 3443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.46  E-value=8.2e-15  Score=133.25  Aligned_cols=196  Identities=17%  Similarity=0.223  Sum_probs=143.6

Q ss_pred             HHHHhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCC
Q 018344            6 SYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC   82 (357)
Q Consensus         6 ~~~~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~   82 (357)
                      .....++++.+++  +++.....+..++++++|++|++++|.+..   +..+..+++|++|+|++|.+++.... .++.+
T Consensus        65 ~~~~~~~l~~L~l--~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~  141 (336)
T 2ast_B           65 GRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKN  141 (336)
T ss_dssp             HHHHHTTCSEEEC--TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTC
T ss_pred             HhhhhccceEEEc--CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcC
Confidence            3344577777764  555566666678889999999999997653   34567899999999999988766544 45679


Q ss_pred             CCccEEeeecCCCCCcc----CcCCCCCccEEEeccc-CCC---cceeEeecc-eeeEEEEeecC--CC---ceeecccc
Q 018344           83 PLIEYININNCPGLKSL----QLLGLNKLKEIKLDSN-RCG---LERVYINGV-NVHSVDIKVYL--EP---CEVNVSSC  148 (357)
Q Consensus        83 ~~L~~L~L~~c~~l~~l----~l~~~~~L~~L~l~~c-~~~---l~~~~~~~p-~L~~L~l~~~~--~~---~~~~~~~~  148 (357)
                      ++|++|++++|..++..    .+.++++|++|++++| ...   +......+| +|++|+++++.  ..   ....+.++
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~  221 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  221 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence            99999999999655531    1335689999999999 421   122233578 99999998863  22   12345678


Q ss_pred             ccccceeecccc-cCHHHHHHHhccCCccceeeccccccccccc----cccccccEEEcccc
Q 018344          149 KNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSIN----ISSPRLKELVFERC  205 (357)
Q Consensus       149 ~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~----~~~~~L~~L~l~~c  205 (357)
                      ++|+.|++++|. +++..+. .+..+++|+.|++++|..+....    ...++|+.|++++|
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999999999998 6665444 56788999999999886542221    12688999999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=6.1e-14  Score=132.92  Aligned_cols=167  Identities=19%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             cCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344           21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL   99 (357)
Q Consensus        21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l   99 (357)
                      +++....+|..   .++|++|++++|.+.. |..   .++|++|++++|.++.  ++. ++++++|++|++++|. ++.+
T Consensus        99 ~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~l  168 (454)
T 1jl5_A           99 SCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKL  168 (454)
T ss_dssp             CSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCC
T ss_pred             cCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-Cccc
Confidence            33334445532   2455555555554433 110   1455555555554432  222 4445555555555543 2221


Q ss_pred             ---------------------CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecc
Q 018344          100 ---------------------QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDG  158 (357)
Q Consensus       100 ---------------------~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~  158 (357)
                                           .+.++++|++|++++|..  ..+....++|++|+++++.+.....++++++|+.|++++
T Consensus       169 p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l--~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          169 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL--KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN  246 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC--SSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             CCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC--CcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCC
Confidence                                 222334455555554431  111111235555555553221111345555666666666


Q ss_pred             cccCHHHHHHHhccCCccceeeccccccccccccccccccEEEcccc
Q 018344          159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (357)
Q Consensus       159 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c  205 (357)
                      |.+++  ++   ...++|+.|++++| .+..++...++|+.|+++++
T Consensus       247 N~l~~--l~---~~~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          247 NLLKT--LP---DLPPSLEALNVRDN-YLTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             SCCSS--CC---SCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred             CcCCc--cc---ccccccCEEECCCC-cccccCcccCcCCEEECcCC
Confidence            55532  11   12355666666443 23334444455666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.45  E-value=5.9e-14  Score=139.75  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .+|.++....++|..+.  +++++|+|++|.+.. + ..+.++++|++|+|++|.++.. .+..++++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCc
Confidence            35566666666776543  567777777776655 2 3466777777777777765321 12335567777777777764


Q ss_pred             CCCccC---cCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                       ++.+.   +.++++|++|++++|.. ... .....+++|++|+++++....  ...+.++++|++|++++|.+++....
T Consensus        85 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           85 -LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             -cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence             33322   44556777777777652 111 111235677777776643221  12345667777777777766432111


Q ss_pred             HH-hccCCccceeecccc
Q 018344          168 NQ-ISELPFLEYLALHYC  184 (357)
Q Consensus       168 ~l-~~~~~~L~~L~l~~~  184 (357)
                      .+ ...+++|+.|+++++
T Consensus       164 ~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             HHGGGTTCEESEEECTTC
T ss_pred             HhhccccccccEEECCCC
Confidence            11 224567777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.44  E-value=1.5e-13  Score=133.76  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=49.1

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .+|++++....+|..+.  ++|++|++++|.+..  |..+.++++|++|+|++|.++.. .+..+.++++|++|++++|.
T Consensus        35 ~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred             EEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCc
Confidence            34555555556665443  456666666665544  23455666666666666654321 12223455556666665554


Q ss_pred             CCCccCcCCCCCccEEEecccC
Q 018344           95 GLKSLQLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        95 ~l~~l~l~~~~~L~~L~l~~c~  116 (357)
                       ++.++...+++|++|++++|.
T Consensus       112 -l~~lp~~~l~~L~~L~Ls~N~  132 (562)
T 3a79_B          112 -LQNISCCPMASLRHLDLSFND  132 (562)
T ss_dssp             -CCEECSCCCTTCSEEECCSSC
T ss_pred             -CCccCccccccCCEEECCCCC
Confidence             333332234555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=129.83  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=107.6

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++........+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|++|.+.... ...+.++++|++|+|++|. 
T Consensus        48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-  123 (440)
T 3zyj_A           48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-  123 (440)
T ss_dssp             EECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-
T ss_pred             EEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-
Confidence            4455556677777654  567888888877655  456777888888888887663211 2235567788888887764 


Q ss_pred             CCcc---CcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeec-CCCc--eeeccccccccceeecccccCHHHHH
Q 018344           96 LKSL---QLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVY-LEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      ++.+   .+.++++|++|++++|... +.. ....+++|++|++++. ....  ...+.++++|+.|++++|.+++  ++
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc
Confidence            3333   2345577777777777521 111 1123567777777652 2211  1235566677777777776643  12


Q ss_pred             HHhccCCccceeeccccccccccc-c---ccccccEEEcccccccccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEF  211 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~-~---~~~~L~~L~l~~c~~L~~~  211 (357)
                       .+..+++|+.|++++|. +..++ .   ..++|++|+++++ .++.+
T Consensus       202 -~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  246 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVI  246 (440)
T ss_dssp             -CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred             -ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEE
Confidence             24566677777776542 32221 1   1456666666666 44443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.44  E-value=7.6e-14  Score=138.94  Aligned_cols=105  Identities=17%  Similarity=0.077  Sum_probs=48.5

Q ss_pred             CCCCccEEeeecCCCCC--ccCcCCCCCccEEEecccCCCcceeE------eecceeeEEEEeecCCCc--eeecccccc
Q 018344           81 GCPLIEYININNCPGLK--SLQLLGLNKLKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEPC--EVNVSSCKN  150 (357)
Q Consensus        81 ~~~~L~~L~L~~c~~l~--~l~l~~~~~L~~L~l~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~--~~~~~~~~~  150 (357)
                      .+++|++|++++|..-.  .-.+.++++|++|++++|......+.      ...++|+.++++++.+..  ...+.++++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            45555555555543211  11133445666666665541111111      011355555555533221  123445666


Q ss_pred             ccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          151 LTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       151 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      |+.|++++|.+++......+.++++|+.|++++|.
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence            66666666665432222334556666666665443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=7.2e-13  Score=125.64  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=146.9

Q ss_pred             hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      -..++.++  ++++....+| .+..+++|++|++++|.+... .+..+++|++|++++|.++..  +  ++++++|++|+
T Consensus        41 l~~L~~L~--Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLD--CHNSSITDMT-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEE--CCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred             cCCCCEEE--ccCCCcccCh-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEE
Confidence            35566655  4566666777 688899999999999988773 378899999999999988542  2  67899999999


Q ss_pred             eecCCCCCccCcCCCCCccEEEecccCCCcceeEe-ecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHH
Q 018344           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (357)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~  168 (357)
                      +++|. ++.+++..+++|++|++++|..  ..+.+ .+++|++|+++++.......+..+++|+.|++++|.+++  ++ 
T Consensus       113 L~~N~-l~~l~~~~l~~L~~L~l~~N~l--~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~-  186 (457)
T 3bz5_A          113 CDTNK-LTKLDVSQNPLLTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD-  186 (457)
T ss_dssp             CCSSC-CSCCCCTTCTTCCEEECTTSCC--SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-
T ss_pred             CCCCc-CCeecCCCCCcCCEEECCCCcc--ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec-
Confidence            99985 5566777889999999999873  12222 477899999987532212357788999999999999865  33 


Q ss_pred             HhccCCccceeeccccccccccccc-cccccEEEcccccccccccc-cCCCcceEEeee
Q 018344          169 QISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFEL-DTPNLSIFKCFN  225 (357)
Q Consensus       169 l~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i-~~~~L~~~~~~~  225 (357)
                       ++.+++|+.|+++++. +..++.. .++|+.|+++++ +++.+.+ ..++|+.+...+
T Consensus       187 -l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSV  242 (457)
T ss_dssp             -CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCS
T ss_pred             -cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-cccccCccccCCCCEEEeeC
Confidence             7889999999997553 4444433 578999999988 6666543 234555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.43  E-value=1.9e-13  Score=123.12  Aligned_cols=191  Identities=16%  Similarity=0.111  Sum_probs=135.0

Q ss_pred             CCeEEEEEecCCcce---ecCcccccCCCccEEEeec-cccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCc
Q 018344           12 NVKELKLDVGCCRIY---NLPQIVFYLKSIYVLDFEF-CKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI   85 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~---~lP~~i~~~~~L~~L~Ls~-~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L   85 (357)
                      .|+++  +++++...   .+|..+.++++|++|++++ +.+..  |..+.++++|++|+|++|.++.. ++..+..+++|
T Consensus        51 ~l~~L--~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNL--DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CEEEE--EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             eEEEE--ECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence            34444  45555444   7899999999999999995 66653  66889999999999999987422 34456789999


Q ss_pred             cEEeeecCCCCCcc--CcCCCCCccEEEecccCCCccee---Eeecc-eeeEEEEeecCCC--ceeeccccccccceeec
Q 018344           86 EYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERV---YINGV-NVHSVDIKVYLEP--CEVNVSSCKNLTHLRLD  157 (357)
Q Consensus        86 ~~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~---~~~~p-~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~  157 (357)
                      ++|++++|..-..+  .+..+++|++|++++|. ....+   ....+ +|++|+++++.+.  ....+..++ |+.|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999998633222  34567899999999987 22122   12344 8899998874322  113455555 9999999


Q ss_pred             ccccCHHHHHHHhccCCccceeecccccccccccc--ccccccEEEcccccccc
Q 018344          158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELV  209 (357)
Q Consensus       158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~~L~~L~l~~c~~L~  209 (357)
                      +|.+++. .+..+..+++|+.|+++++.....++.  ..++|++|+++++ .++
T Consensus       206 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~  257 (313)
T 1ogq_A          206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIY  257 (313)
T ss_dssp             SSEEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCE
T ss_pred             CCcccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-ccc
Confidence            9988542 445678899999999987654333332  2578999999888 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=9.1e-14  Score=136.50  Aligned_cols=174  Identities=13%  Similarity=0.160  Sum_probs=126.3

Q ss_pred             cccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEE
Q 018344           32 VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK  111 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~  111 (357)
                      +..+++|+.|+++++.+.....+..+++|++|++++|.+  ..++.+  .+++|++|++++|.......+..+++|++|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--cccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            667889999999998876622788899999999999977  233433  7899999999999777666777789999999


Q ss_pred             ecccCC-Cc---ceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344          112 LDSNRC-GL---ERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (357)
Q Consensus       112 l~~c~~-~l---~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  186 (357)
                      +++|.. ..   ......+++|++|+++++... ....+.++++|+.|++++|.+.+......+.++++|+.|++++|..
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            998862 11   111224678999998875432 1145677888999999998875532224567889999999987764


Q ss_pred             cccccc---ccccccEEEccccccccc
Q 018344          187 LRSINI---SSPRLKELVFERCEELVE  210 (357)
Q Consensus       187 l~~l~~---~~~~L~~L~l~~c~~L~~  210 (357)
                      ....+.   ..++|++|++++| .+++
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n-~l~~  462 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGN-SFKD  462 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTC-EEGG
T ss_pred             CccchhhhcCCCCCCEEECCCC-cCCC
Confidence            433332   2578888988888 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.42  E-value=1.9e-13  Score=129.48  Aligned_cols=193  Identities=16%  Similarity=0.099  Sum_probs=138.8

Q ss_pred             CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.|+  ++++....++ ..+.++++|++|+|++|.+..  +..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus        76 ~l~~L~--L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           76 NTRYLN--LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL  152 (452)
T ss_dssp             TCSEEE--CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred             CccEEE--CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence            455554  5666666664 556779999999999998765  46788999999999999977421 12335678999999


Q ss_pred             eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEe----ecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      ++++|. ++.+   .+.++++|++|++++|. .+..+..    .+++|++|+++++.+.....+..+++|+.|++++|.+
T Consensus       153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCC-cceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            999986 3433   34466899999999876 5554422    4678999999886543223567788899999999988


Q ss_pred             CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccccc
Q 018344          162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE  212 (357)
Q Consensus       162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~  212 (357)
                      ++. .+..+.++++|+.|+++++. +..+..    ..++|+.|+++++ +++.+.
T Consensus       231 ~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  282 (452)
T 3zyi_A          231 PEI-RPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLP  282 (452)
T ss_dssp             SEE-CGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             ccc-CcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence            542 24457889999999997654 333322    1578999999988 666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=3.7e-13  Score=119.51  Aligned_cols=190  Identities=17%  Similarity=0.130  Sum_probs=132.6

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.+......+|..+  .++|++|+++++.+..  +..+.++++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCC
Confidence            4566666777888755  4689999999988766  34688999999999999977432 13346678999999999987


Q ss_pred             CCCcc---CcCCCCCccEEEecccCC-Cc-ceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           95 GLKSL---QLLGLNKLKEIKLDSNRC-GL-ERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        95 ~l~~l---~l~~~~~L~~L~l~~c~~-~l-~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      .++.+   .+.++++|++|++++|.. .. ......+++|++|++++..+..  ...+..+++|+.|++++|.+++- ..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~  170 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PE  170 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CH
Confidence            55544   345668999999999872 11 1112246789999998854321  12366788899999999887531 22


Q ss_pred             HHhccCCccceeeccccccccccccc---cccccEEEcccccccccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF  211 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~  211 (357)
                      ..+.++++|+.|+++++.-....+..   .++|+.|+++++ .++++
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~  216 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL  216 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcC
Confidence            34677899999999766432221222   567888988888 55543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.42  E-value=7.8e-14  Score=135.83  Aligned_cols=247  Identities=11%  Similarity=0.048  Sum_probs=145.9

Q ss_pred             ecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCC
Q 018344           27 NLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN  105 (357)
Q Consensus        27 ~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~  105 (357)
                      .+|..+..+++|+.|++++|.+.. |..+..+ +|++|++++|.+.  .++.  ..+++|++|++++|..........++
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP  347 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred             hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence            345666678888888888887665 5566667 8888888888764  1221  46788888888887654444445668


Q ss_pred             CccEEEecccCCCccee-----EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344          106 KLKEIKLDSNRCGLERV-----YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL  179 (357)
Q Consensus       106 ~L~~L~l~~c~~~l~~~-----~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  179 (357)
                      +|++|++++|.. ....     ...+++|++|+++++... ....+.++++|++|+++++.+.+......+.++++|+.|
T Consensus       348 ~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            888888888762 2111     124678888888775432 113366778888888888877543222346778888888


Q ss_pred             eccccccccccccc---cccccEEEcccccccccccccCCCcceEEeeeeeeeEecccccceeEEEEEEecCCChHHHHH
Q 018344          180 ALHYCMKLRSINIS---SPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLK  256 (357)
Q Consensus       180 ~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~  256 (357)
                      ++++|......+..   .++|+.|++++| .+++..+              |........|+.++++.+.....      
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------p~~~~~l~~L~~L~l~~n~l~~~------  485 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFL--------------PDIFTELRNLTFLDLSQCQLEQL------  485 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEE--------------CSCCTTCTTCCEEECTTSCCCEE------
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCC-cCccccc--------------hhhhhcccCCCEEECCCCccccC------
Confidence            88766543333322   567888888877 3332100              10011123444444421110000      


Q ss_pred             HHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEec
Q 018344          257 FIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (357)
Q Consensus       257 l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~  306 (357)
                      ....+.++++++.|.+..+...  .+++.    ....+++|++|++.+++
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~--~~~~~----~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLK--SVPDG----IFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS--CCCTT----TTTTCTTCCEEECCSSC
T ss_pred             ChhhhhcccCCCEEeCCCCcCC--CCCHH----HhhcccCCcEEEecCCc
Confidence            0123556788888877655322  22221    11235778888888554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.41  E-value=7.7e-14  Score=125.21  Aligned_cols=205  Identities=19%  Similarity=0.257  Sum_probs=130.1

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CC-CccCCCCCceEEeeccccCHHH-HHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PR-STVTLFSLRKLCLSFVHVDDEV-IRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~-~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L~~L~L~~c   93 (357)
                      .++.+......+|..+.  ++|++|++++|.+.. |. .+.++++|++|+|++|.++... .+.....+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            35566666778887654  589999999987766 43 4678899999999988774211 1122346888999999887


Q ss_pred             CCCCcc--CcCCCCCccEEEecccCC-Ccce--eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHH
Q 018344           94 PGLKSL--QLLGLNKLKEIKLDSNRC-GLER--VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWL  166 (357)
Q Consensus        94 ~~l~~l--~l~~~~~L~~L~l~~c~~-~l~~--~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~  166 (357)
                      .. ..+  .+.++++|++|++++|.. ....  .....++|++|++++..+..  ...+.++++|++|++++|.+++...
T Consensus        89 ~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            53 222  234567888888888762 1111  12246788888887743321  1235667788888888887755344


Q ss_pred             HHHhccCCccceeecccccccccc-cc---ccccccEEEccccccccccc---c-cCCCcceEEeeee
Q 018344          167 YNQISELPFLEYLALHYCMKLRSI-NI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY  226 (357)
Q Consensus       167 ~~l~~~~~~L~~L~l~~~~~l~~l-~~---~~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~  226 (357)
                      +..+..+++|+.|++++|. +..+ +.   ..++|++|+++++ .++++.   + ..++|+.+...+.
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence            5566778888888887654 3333 21   1467888888877 455432   1 2345555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=2.7e-14  Score=129.01  Aligned_cols=224  Identities=13%  Similarity=0.057  Sum_probs=126.3

Q ss_pred             CCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEe
Q 018344           35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL  112 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l  112 (357)
                      +++|++|+|++|.+..  |..+.++++|++|+|++|.++..  .. +..+++|++|++++|. ++.+.  ..++|++|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEEC
Confidence            5577777777776655  23566777777777777766321  11 5567777777777764 33222  2267777777


Q ss_pred             cccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccc
Q 018344          113 DSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI  190 (357)
Q Consensus       113 ~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l  190 (357)
                      ++|. .........++|++|+++++.+..  ...+..+++|+.|++++|.+++.....+...+++|+.|++++|. +..+
T Consensus       107 ~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  184 (317)
T 3o53_A          107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (317)
T ss_dssp             CSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             CCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence            7776 222222335677777777643321  23455667777777777776543233334567777777776543 3333


Q ss_pred             ccc--cccccEEEccccccccccc---ccCCCcceEEeeeee----eeEecccccceeEEEEEEecCCChHHH-HHHHHH
Q 018344          191 NIS--SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ESFSSNALALSQTLLCFISHPVDNEWY-LKFIKL  260 (357)
Q Consensus       191 ~~~--~~~L~~L~l~~c~~L~~~~---i~~~~L~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~~-~~l~~~  260 (357)
                      +..  .++|++|+++++ .++.+.   ...++|+.+...+..    |........++.++++.+      .+. ..+..+
T Consensus       185 ~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N------~~~~~~~~~~  257 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN------GFHCGTLRDF  257 (317)
T ss_dssp             ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC------CCBHHHHHHH
T ss_pred             ccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC------CccCcCHHHH
Confidence            322  566777777776 455432   123445444443332    110112345666655321      111 245667


Q ss_pred             HhhcccccceeEE
Q 018344          261 LARFNLCSNVLNL  273 (357)
Q Consensus       261 l~~l~~lk~L~l~  273 (357)
                      +..++.++.|.+.
T Consensus       258 ~~~~~~L~~l~l~  270 (317)
T 3o53_A          258 FSKNQRVQTVAKQ  270 (317)
T ss_dssp             HHTCHHHHHHHHH
T ss_pred             HhccccceEEECC
Confidence            7778888877765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=1.6e-12  Score=126.53  Aligned_cols=145  Identities=14%  Similarity=0.052  Sum_probs=83.2

Q ss_pred             cccccccceeecccccCHHHHHHHhccCCccceeeccccccccccc---c---ccccccEEEccccccccc-cc----cc
Q 018344          146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---I---SSPRLKELVFERCEELVE-FE----LD  214 (357)
Q Consensus       146 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~---~~~~L~~L~l~~c~~L~~-~~----i~  214 (357)
                      ..+++|++|++++|.+++. .+..+.++++|+.|+++++ .+..++   .   ..++|+.|+++++ .++. +.    -.
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence            5667899999999988652 3455688999999999765 343332   1   2578999999988 4554 32    12


Q ss_pred             CCCcceEEeeeee--e-eEecccccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCC
Q 018344          215 TPNLSIFKCFNYV--E-SFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILC  291 (357)
Q Consensus       215 ~~~L~~~~~~~~~--~-~~~~~~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~  291 (357)
                      .++|+.+...+..  . .+..-+..++.++++.+....       +..-+..+++++.|.+......  .+|+.    ..
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~--~l~~~----~~  493 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-------IPKDVTHLQALQELNVASNQLK--SVPDG----VF  493 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-------CCTTTTSSCCCSEEECCSSCCC--CCCTT----ST
T ss_pred             cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-------cChhhcCCCCCCEEECCCCCCC--CCCHH----HH
Confidence            3455555444332  0 000001466666664322111       1122336778888777654332  34443    12


Q ss_pred             CCCCCcceEEEEEec
Q 018344          292 PPLTYHKHVSFSVLS  306 (357)
Q Consensus       292 p~~~~L~~L~l~~~~  306 (357)
                      ..+++|++|.+.+++
T Consensus       494 ~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          494 DRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TTCTTCCCEECCSCC
T ss_pred             hcCCCCCEEEecCCC
Confidence            345778888888654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.41  E-value=2.9e-13  Score=120.20  Aligned_cols=190  Identities=16%  Similarity=0.097  Sum_probs=136.1

Q ss_pred             CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCcc
Q 018344           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE   86 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~   86 (357)
                      ..+++++  ++++....+|. .+..+++|++|++++|.+..  |..+.++++|++|++++|. +... .+..+..+++|+
T Consensus        32 ~~l~~L~--l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIF--LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCceEEE--eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCC
Confidence            4556555  56666777775 46679999999999997765  5678899999999999996 4321 133466789999


Q ss_pred             EEeeecCCCCCc--cCcCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccc
Q 018344           87 YININNCPGLKS--LQLLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        87 ~L~L~~c~~l~~--l~l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~  160 (357)
                      +|++++|..-..  -.+.++++|++|++++|... ... ....+++|++|+++++.+..  ...+.++++|+.|++++|.
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            999999863222  12456789999999998731 111 12247899999999865431  1236788999999999998


Q ss_pred             cCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccc
Q 018344          161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (357)
Q Consensus       161 i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c  205 (357)
                      +++. .+..+.++++|+.|+++++ .+..++.    ..++|+.|+++++
T Consensus       189 l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          189 VAHV-HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCEE-CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccc-CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence            8652 2445788999999999765 3444432    1567888888776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=5.8e-13  Score=120.82  Aligned_cols=189  Identities=20%  Similarity=0.264  Sum_probs=121.0

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.  ++++++....+|. .+.++++|++|++++|.+..  |..+.++++|++|++++|.++.  ++.  ...++|++|
T Consensus        53 ~l~~--L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L  126 (330)
T 1xku_A           53 DTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQEL  126 (330)
T ss_dssp             TCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEE
T ss_pred             CCeE--EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEE
Confidence            4454  4567777777876 56779999999999988765  5678899999999999997642  111  123678888


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccCCC---cc-eeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCG---LE-RVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~---l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      ++++|. ++.+.   +.++++|++|++++|...   .. .....+++|++|++++..+.. ....-.++|++|++++|.+
T Consensus       127 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l  204 (330)
T 1xku_A          127 RVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKI  204 (330)
T ss_dssp             ECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCC
T ss_pred             ECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcC
Confidence            888875 33322   345678888888877621   11 111236778888887743321 0011126688888888777


Q ss_pred             CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccccccccc
Q 018344          162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEF  211 (357)
Q Consensus       162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~  211 (357)
                      ++. .+..+.++++|+.|+++++. +..++.    ..++|++|++++| .++.+
T Consensus       205 ~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l  255 (330)
T 1xku_A          205 TKV-DAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKV  255 (330)
T ss_dssp             CEE-CTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred             Ccc-CHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccC
Confidence            542 13346677888888886553 322221    1467888888877 55544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=1.1e-12  Score=117.86  Aligned_cols=183  Identities=20%  Similarity=0.201  Sum_probs=132.7

Q ss_pred             ccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEE
Q 018344           33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIK  111 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~  111 (357)
                      ..+++|++|++++|.+.....+..+++|++|++++|.+...  +. +..+++|++|++++|. ++.+ .+..+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence            35779999999999887633788999999999999988432  22 7889999999999987 4433 355678999999


Q ss_pred             ecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccc
Q 018344          112 LDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI  190 (357)
Q Consensus       112 l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l  190 (357)
                      +++|.. .... ...+++|++|+++++.+.....+..+++|+.|++++|.+++  ++. +..+++|+.|++++|. +..+
T Consensus       114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~  188 (308)
T 1h6u_A          114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDI  188 (308)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred             CCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcC
Confidence            999973 2222 23478999999988654322237788999999999998865  222 7889999999997654 4444


Q ss_pred             cc--ccccccEEEccccccccccc--ccCCCcceEEeee
Q 018344          191 NI--SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFN  225 (357)
Q Consensus       191 ~~--~~~~L~~L~l~~c~~L~~~~--i~~~~L~~~~~~~  225 (357)
                      +.  ..++|++|++++| .++++.  -..++|+.+...+
T Consensus       189 ~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          189 SPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (308)
T ss_dssp             GGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             hhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccC
Confidence            32  2678999999998 566543  1233444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.39  E-value=5.1e-13  Score=117.71  Aligned_cols=183  Identities=19%  Similarity=0.193  Sum_probs=112.1

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.++.....+|..+.  +++++|+++++.+..  +..+.++++|++|+|++|.++.- ....+..+++|++|++++|.
T Consensus        20 ~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           20 SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred             EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence            35667777788887664  689999999998766  34788999999999999977421 12335678999999999986


Q ss_pred             CCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                       ++.+.   +.++++|++|++++|.. .... ....+++|++|+++++.+..  ...+..+++|+.|++++|.+++- .+
T Consensus        97 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~  174 (270)
T 2o6q_A           97 -LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PE  174 (270)
T ss_dssp             -CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CT
T ss_pred             -CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-Ch
Confidence             44333   34568899999998862 1111 11235566666666543221  11245556666666666655331 11


Q ss_pred             HHhccCCccceeeccccccccccccc----cccccEEEcccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERC  205 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c  205 (357)
                      ..+.++++|+.|+++++ .+..++..    .++|+.|+++++
T Consensus       175 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence            23455666666666544 23333221    344555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.39  E-value=4e-13  Score=121.07  Aligned_cols=191  Identities=14%  Similarity=0.085  Sum_probs=136.4

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      ..++.|++.-...-...+|..+.++++|++|++++|.+..  |..+.++++|++|+|++|.+... ++..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            4667777642122233789999999999999999998863  66789999999999999987422 34456789999999


Q ss_pred             eeecCCCCCcc--CcCCCC-CccEEEecccCCCccee--EeecceeeEEEEeecCCC--ceeeccccccccceeeccccc
Q 018344           89 NINNCPGLKSL--QLLGLN-KLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        89 ~L~~c~~l~~l--~l~~~~-~L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      ++++|..-..+  .+..++ +|++|++++|. ....+  .+....|+.|+++++.+.  ....+.++++|+.|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            99998742122  344555 89999999987 22111  122224899999874322  124567889999999999998


Q ss_pred             CHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344          162 TDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (357)
Q Consensus       162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c  205 (357)
                      ++.. + .+..+++|+.|+++++.....++..   .++|++|+++++
T Consensus       234 ~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          234 AFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             eeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            6432 2 2678899999999877644444433   567888888887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.38  E-value=5.8e-13  Score=121.97  Aligned_cols=168  Identities=18%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .+++++  ++++....+|. .+.++++|++|++++|.+..  |..+.++++|++|+|++|.++.- ....+.++++|++|
T Consensus        53 ~L~~L~--l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  129 (353)
T 2z80_A           53 AVKSLD--LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFL  129 (353)
T ss_dssp             TCCEEE--CTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEE
T ss_pred             cCcEEE--CCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEE
Confidence            455554  57777778887 67789999999999998765  45688999999999999987432 23446789999999


Q ss_pred             eeecCCCCCccC----cCCCCCccEEEecccCCCccee----EeecceeeEEEEeecCCCc--eeeccccccccceeecc
Q 018344           89 NINNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDG  158 (357)
Q Consensus        89 ~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~  158 (357)
                      ++++|. ++.+.    +.++++|++|++++|. ....+    ...+++|++|+++++.+..  ...+.++++|++|++++
T Consensus       130 ~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          130 NLLGNP-YKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             ECCCCC-CcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            999986 33332    4467899999999985 33333    2247899999999865431  14567889999999999


Q ss_pred             cccCHHHHHHHhccCCccceeeccccc
Q 018344          159 LSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       159 ~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      +.++. .....+..+++|+.|+++++.
T Consensus       208 n~l~~-~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          208 KQHIL-LLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             SCSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred             Ccccc-chhhhhhhcccccEEECCCCc
Confidence            98843 233456678999999997654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=2.4e-13  Score=129.98  Aligned_cols=233  Identities=14%  Similarity=0.082  Sum_probs=136.9

Q ss_pred             eecCcccccCC----CccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344           26 YNLPQIVFYLK----SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL   99 (357)
Q Consensus        26 ~~lP~~i~~~~----~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l   99 (357)
                      ..+|..+..+.    +|++|+|++|.+..  |..+.++++|++|+|++|.++... +  +..+++|++|++++|. ++.+
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l   95 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQEL   95 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEE
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCC
Confidence            34555554433    78888888887765  346778888888888888763211 1  6678888888888874 3333


Q ss_pred             CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccc
Q 018344          100 QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE  177 (357)
Q Consensus       100 ~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~  177 (357)
                      ..  .++|++|++++|. .........++|++|+++++.+..  ...++++++|+.|++++|.+++.....+...+++|+
T Consensus        96 ~~--~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~  172 (487)
T 3oja_A           96 LV--GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE  172 (487)
T ss_dssp             EE--CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred             CC--CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence            22  2678888888876 222223346778888887754321  235667778888888888776533333444678888


Q ss_pred             eeeccccccccccccc--cccccEEEccccccccccc---ccCCCcceEEeeeee----eeEecccccceeEEEEEEecC
Q 018344          178 YLALHYCMKLRSINIS--SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ESFSSNALALSQTLLCFISHP  248 (357)
Q Consensus       178 ~L~l~~~~~l~~l~~~--~~~L~~L~l~~c~~L~~~~---i~~~~L~~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~  248 (357)
                      .|++++|. +..++..  .++|+.|+++++ .++.+.   ...++|..+...+..    |........+..++++.+.  
T Consensus       173 ~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~--  248 (487)
T 3oja_A          173 HLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG--  248 (487)
T ss_dssp             EEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC--
T ss_pred             EEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC--
Confidence            88886654 3333322  567888888877 555432   123455555544432    1111123455555542211  


Q ss_pred             CChHHHHHHHHHHhhcccccceeE
Q 018344          249 VDNEWYLKFIKLLARFNLCSNVLN  272 (357)
Q Consensus       249 ~~~~~~~~l~~~l~~l~~lk~L~l  272 (357)
                      ..   ...+..++..++.++.+.+
T Consensus       249 l~---c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          249 FH---CGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             BC---HHHHHHHHTTCHHHHHHHH
T ss_pred             Cc---CcchHHHHHhCCCCcEEec
Confidence            11   0234555666666665554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=5.1e-13  Score=126.15  Aligned_cols=193  Identities=15%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.+  +++++....++ ..+.++++|++|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..+++|++|
T Consensus        65 ~l~~L--~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           65 NTRLL--NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKEL  141 (440)
T ss_dssp             TCSEE--ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEE
T ss_pred             CCcEE--EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCcee
Confidence            34554  45666666666 456678999999999987765  35678899999999999977421 12245678999999


Q ss_pred             eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeE----eecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      ++++|. ++.+   .+.++++|++|++++|. .+..+.    ..+++|++|+++++.+.....+..+++|+.|++++|.+
T Consensus       142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          142 WLRNNP-IESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             ECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eCCCCc-ccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            999876 3333   34566889999998876 444432    24678888988885443223567778899999998887


Q ss_pred             CHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccccc
Q 018344          162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE  212 (357)
Q Consensus       162 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~~  212 (357)
                      ++. .+..+.++++|+.|+++++. +..++.    ..++|+.|+++++ +++.+.
T Consensus       220 ~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  271 (440)
T 3zyj_A          220 SAI-RPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP  271 (440)
T ss_dssp             CEE-CTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred             Ccc-ChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence            542 23456788899999986553 333322    2577888888887 666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=3.6e-13  Score=127.58  Aligned_cols=177  Identities=20%  Similarity=0.206  Sum_probs=108.5

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ..+++++  ++++....+|..   .++|++|++++|.+.. |.   .+++|++|++++|.++.  ++   ...++|++|+
T Consensus        71 ~~l~~L~--l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~--l~---~~~~~L~~L~  137 (454)
T 1jl5_A           71 RQAHELE--LNNLGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA--LS---DLPPLLEYLG  137 (454)
T ss_dssp             HTCSEEE--CTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC--CC---SCCTTCCEEE
T ss_pred             cCCCEEE--ecCCccccCCCC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc--cc---CCCCCCCEEE
Confidence            3455554  567667778863   3789999999998876 43   35899999999997742  11   1226899999


Q ss_pred             eecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH-----
Q 018344           90 INNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-----  163 (357)
Q Consensus        90 L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-----  163 (357)
                      +++|.. +.+ .+.++++|++|++++|..  ..+....++|++|+++++.+.....++++++|+.|++++|.+++     
T Consensus       138 L~~n~l-~~lp~~~~l~~L~~L~l~~N~l--~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~  214 (454)
T 1jl5_A          138 VSNNQL-EKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP  214 (454)
T ss_dssp             CCSSCC-SSCCCCTTCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred             CcCCCC-CCCcccCCCCCCCEEECCCCcC--cccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc
Confidence            999863 333 455668899999998862  12222245788888877433211245566666666666665532     


Q ss_pred             -------------HHHHHHhccCCccceeeccccccccccccccccccEEEcccc
Q 018344          164 -------------KWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (357)
Q Consensus       164 -------------~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~c  205 (357)
                                   ..++. +..+++|+.|+++++ .+..++...++|+.|+++++
T Consensus       215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN  267 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCcccc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCC
Confidence                         01111 344555555555432 23333333455666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=1.4e-12  Score=120.91  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             cceecCcccccCCCccEEEeeccccCC--C----CCccCCCCCceEEeeccccC------HHH---HHHHHcCCCCccEE
Q 018344           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLCLSFVHVD------DEV---IRDMVAGCPLIEYI   88 (357)
Q Consensus        24 ~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p----~~~~~l~~L~~L~L~~~~~~------~~~---l~~l~~~~~~L~~L   88 (357)
                      ....++..+..+++|++|+|++|.+..  +    ..+..+++|++|+|++|.+.      ...   +...+..+++|++|
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            345677777788899999999987654  1    13567899999999887442      112   23334678999999


Q ss_pred             eeecCCCCC----cc--CcCCCCCccEEEecccC
Q 018344           89 NINNCPGLK----SL--QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        89 ~L~~c~~l~----~l--~l~~~~~L~~L~l~~c~  116 (357)
                      +|++|..-.    .+  .+..+++|++|++++|.
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            998876322    11  22345788888888887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.34  E-value=2.7e-13  Score=121.59  Aligned_cols=193  Identities=17%  Similarity=0.152  Sum_probs=137.2

Q ss_pred             CCCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC----CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCc
Q 018344           11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI   85 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~----p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L   85 (357)
                      ..+++++  ++++....+|..+ .++++|++|++++|.+..    +..+..+++|++|++++|.+..  ++..+..+++|
T Consensus        28 ~~l~~L~--L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEE--CCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            3566555  5667777899875 579999999999987653    2355679999999999997632  22335679999


Q ss_pred             cEEeeecCCCCCc---cCcCCCCCccEEEecccCCC--cceeEeecceeeEEEEeecCCC---ceeeccccccccceeec
Q 018344           86 EYININNCPGLKS---LQLLGLNKLKEIKLDSNRCG--LERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLD  157 (357)
Q Consensus        86 ~~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~--l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~L~  157 (357)
                      ++|++++|..-..   -.+..+++|++|++++|...  .......+++|++|++++..+.   ....+..+++|+.|+++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            9999999763211   13456689999999998721  1111224689999999875332   12457788999999999


Q ss_pred             ccccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEccccccccc
Q 018344          158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVE  210 (357)
Q Consensus       158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~  210 (357)
                      +|.+++. .+..+..+++|+.|+++++. +..++.    ..++|+.|+++++ .++.
T Consensus       184 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~  237 (306)
T 2z66_A          184 QCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMT  237 (306)
T ss_dssp             TSCCCEE-CTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCB
T ss_pred             CCCcCCc-CHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC-CCcc
Confidence            9988542 24456789999999997664 333332    1578999999998 5554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=2.5e-12  Score=114.62  Aligned_cols=164  Identities=18%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             CCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecc
Q 018344           35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS  114 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~  114 (357)
                      +++|+.|++++|.+.....+..+++|++|++++|.++..  .. +..+++|++|++++|..-..-.+..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence            445555555555544422345555555555555554221  11 445555555555555421111233345555555555


Q ss_pred             cCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc-
Q 018344          115 NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS-  193 (357)
Q Consensus       115 c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~-  193 (357)
                      |...-......+++|++|+++++.+.....+..+++|+.|++++|.+++..  . +..+++|+.|++++| .+..++.. 
T Consensus       122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N-~i~~l~~l~  197 (291)
T 1h6t_A          122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN-HISDLRALA  197 (291)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCBCGGGT
T ss_pred             CcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC-cCCCChhhc
Confidence            541100111123455555554433221123455566666666666664321  1 556666666666543 33333221 


Q ss_pred             -cccccEEEcccc
Q 018344          194 -SPRLKELVFERC  205 (357)
Q Consensus       194 -~~~L~~L~l~~c  205 (357)
                       .++|+.|+++++
T Consensus       198 ~l~~L~~L~l~~n  210 (291)
T 1h6t_A          198 GLKNLDVLELFSQ  210 (291)
T ss_dssp             TCTTCSEEEEEEE
T ss_pred             cCCCCCEEECcCC
Confidence             345556655555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=1.3e-11  Score=120.93  Aligned_cols=132  Identities=14%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ..++.|+  ++++....+|.   .+++|++|+|++|.+.. |.   .+++|++|+|++|.++.  ++   ..+++|+.|+
T Consensus        61 ~~L~~L~--L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLV--IPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LP---ALPSGLCKLW  127 (622)
T ss_dssp             TTCSEEE--ECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC--CC---CCCTTCCEEE
T ss_pred             CCCcEEE--ecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC--CC---CCCCCcCEEE
Confidence            3556555  46666778887   56899999999998776 43   78999999999997632  11   1567888888


Q ss_pred             eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeeccccc
Q 018344           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (357)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i  161 (357)
                      +++|. ++.++. .+++|++|++++|..  ..+....++|+.|.++++.+.. .. ..+++|+.|++++|.+
T Consensus       128 L~~N~-l~~lp~-~l~~L~~L~Ls~N~l--~~l~~~~~~L~~L~L~~N~l~~-l~-~~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          128 IFGNQ-LTSLPV-LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTS-LP-MLPSGLQELSVSDNQL  193 (622)
T ss_dssp             CCSSC-CSCCCC-CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCC
T ss_pred             CCCCC-CCcCCC-CCCCCCEEECcCCcC--CCcCCccCCCCEEECCCCCCCC-Cc-ccCCCCcEEECCCCCC
Confidence            88875 444433 236788888877752  1111123455555555433221 00 2234455555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=2.9e-12  Score=122.46  Aligned_cols=200  Identities=22%  Similarity=0.153  Sum_probs=134.1

Q ss_pred             CCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      .++.|+  ++++....+| ..+..+++|++|+|++|.+.....+..+++|++|+|++|.++.      +...++|++|++
T Consensus        35 ~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELD--LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GCCEEE--CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CccEEE--eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            455554  5666666676 4677899999999999988652238899999999999998742      224588999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeecCCCc--eeecc-ccccccceeecccccCHHH
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVYLEPC--EVNVS-SCKNLTHLRLDGLSITDKW  165 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~L~~~~i~~~~  165 (357)
                      ++|. +..+....+++|+.|++++|.. ..... ...+++|++|+++++.+..  ...+. .+++|+.|++++|.+++. 
T Consensus       107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            9976 4444444568899999988873 22222 2346788999888864431  12333 578889999988887542 


Q ss_pred             HHHHhccCCccceeeccccccccccccc---cccccEEEccccccccccc--c-cCCCcceEEeee
Q 018344          166 LYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE--L-DTPNLSIFKCFN  225 (357)
Q Consensus       166 ~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~--i-~~~~L~~~~~~~  225 (357)
                       + ....+++|+.|++++|. +..++..   .++|+.|+++++ .++.+.  + ..++|..+...+
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          185 -K-GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             -E-CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred             -c-ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCC
Confidence             1 12357888999987554 4334332   567888888887 566543  1 224455554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.31  E-value=3.1e-12  Score=113.99  Aligned_cols=165  Identities=18%  Similarity=0.180  Sum_probs=124.1

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..++.++  ++++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.++.  ++. +..+++|++|++
T Consensus        46 ~~L~~L~--l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQII--ANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEE--CTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred             CcccEEE--ccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence            4456554  45666667764 77899999999999988772238899999999999998843  233 678999999999


Q ss_pred             ecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           91 NNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      ++|.. +.+ .+..+++|+.|++++|...-......+++|++|+++++.+.....+..+++|+.|++++|.+++  ++ .
T Consensus       120 ~~n~i-~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--l~-~  195 (291)
T 1h6t_A          120 EHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-A  195 (291)
T ss_dssp             TTSCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-G
T ss_pred             CCCcC-CCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--Ch-h
Confidence            99863 333 3456789999999999731112223478999999998654321237788999999999999865  23 2


Q ss_pred             hccCCccceeeccccc
Q 018344          170 ISELPFLEYLALHYCM  185 (357)
Q Consensus       170 ~~~~~~L~~L~l~~~~  185 (357)
                      +..+++|+.|++++++
T Consensus       196 l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GTTCTTCSEEEEEEEE
T ss_pred             hccCCCCCEEECcCCc
Confidence            7889999999997654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.31  E-value=1.6e-12  Score=114.81  Aligned_cols=188  Identities=21%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++........+|..+.  ++|++|++++|.+..  +..+.++++|++|++++|.+... ....+..+++|++|++++|. 
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-   87 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-   87 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCc-
Confidence            4555556677887654  579999999987765  34778899999999999876421 12235678899999999876 


Q ss_pred             CCcc---CcCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeecCCC---ceeeccccccccceeecccccCH---H
Q 018344           96 LKSL---QLLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD---K  164 (357)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~~L~L~~~~i~~---~  164 (357)
                      ++.+   .+.++++|++|++++|.. ..... ...+++|++|+++++.+.   ....+.++++|++|++++|.+++   .
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            3332   245668899999988863 22221 224678999999875432   12467788999999999998754   1


Q ss_pred             HHHHHhccCCccc-eeeccccccccccccc---cccccEEEccccccccccc
Q 018344          165 WLYNQISELPFLE-YLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       165 ~~~~l~~~~~~L~-~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~~  212 (357)
                      .+. .+..++.|. .|+++++. +..++..   ..+|++|+++++ .++.+.
T Consensus       168 ~~~-~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~  216 (276)
T 2z62_A          168 DLR-VLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVP  216 (276)
T ss_dssp             GGH-HHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCC
T ss_pred             Hhh-hhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecC
Confidence            221 123344443 78886543 3333322   347999999988 566543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.30  E-value=3.2e-12  Score=110.36  Aligned_cols=179  Identities=15%  Similarity=0.082  Sum_probs=108.0

Q ss_pred             ceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344           25 IYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ-  100 (357)
Q Consensus        25 ~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-  100 (357)
                      ...+|. +.  .+|++|+++++.+.. | ..+.++++|++|++++|. ++.- .+..+.++++|++|++++|..++.+. 
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            456666 32  378888888877655 3 356778888888888875 4311 01234677888888888744455543 


Q ss_pred             --cCCCCCccEEEecccCC-CcceeEeecceee---EEEEeec-CCCc--eeecccccccc-ceeecccccCHHHHHHHh
Q 018344          101 --LLGLNKLKEIKLDSNRC-GLERVYINGVNVH---SVDIKVY-LEPC--EVNVSSCKNLT-HLRLDGLSITDKWLYNQI  170 (357)
Q Consensus       101 --l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~---~L~l~~~-~~~~--~~~~~~~~~L~-~L~L~~~~i~~~~~~~l~  170 (357)
                        +.++++|++|++++|.. .++. ....++|+   +|+++++ .+..  ...+.++++|+ .|++++|.++. .....+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhc
Confidence              33557788888887762 2222 12344555   7777765 4321  12356677788 88888777642 111223


Q ss_pred             ccCCccceeeccccccccccccc----c-ccccEEEcccccccccc
Q 018344          171 SELPFLEYLALHYCMKLRSINIS----S-PRLKELVFERCEELVEF  211 (357)
Q Consensus       171 ~~~~~L~~L~l~~~~~l~~l~~~----~-~~L~~L~l~~c~~L~~~  211 (357)
                      .. ++|+.|+++++..+..++..    . ++|+.|+++++ .++.+
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l  220 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTAL  220 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCC
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccC
Confidence            33 67888888766545554322    3 67777877776 45543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.30  E-value=4.3e-12  Score=109.56  Aligned_cols=188  Identities=14%  Similarity=0.095  Sum_probs=131.1

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccc-cCC--CCCccCCCCCceEEeec-cccCHHHHHHHHcCCCCcc
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLIE   86 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~-~~~--p~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~~~L~   86 (357)
                      .++.+++  +++....+|. .+.++++|++|++++|. +..  +..+.++++|++|++++ |.++.- .+..+.++++|+
T Consensus        32 ~l~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKL--IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEE--ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCC
T ss_pred             cccEEEE--eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCC
Confidence            5666554  5666778887 45679999999999996 654  34788999999999998 766421 123456899999


Q ss_pred             EEeeecCCCCCcc-CcCCCCCcc---EEEecccCCCcceeE----eecceee-EEEEeecCCCc-ee-ecccccccccee
Q 018344           87 YININNCPGLKSL-QLLGLNKLK---EIKLDSNRCGLERVY----INGVNVH-SVDIKVYLEPC-EV-NVSSCKNLTHLR  155 (357)
Q Consensus        87 ~L~L~~c~~l~~l-~l~~~~~L~---~L~l~~c~~~l~~~~----~~~p~L~-~L~l~~~~~~~-~~-~~~~~~~L~~L~  155 (357)
                      +|++++|.. +.+ .+..+++|+   +|++++|. .+..+.    ..+++|+ ++++++..+.. .. .+.. ++|+.|+
T Consensus       109 ~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             EEeCCCCCC-ccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            999999863 333 244556777   99999993 233332    2477899 99998854431 11 2333 7899999


Q ss_pred             ecccc-cCHHHHHHHhccC-Cccceeeccccccccccccc-cccccEEEcccccc
Q 018344          156 LDGLS-ITDKWLYNQISEL-PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEE  207 (357)
Q Consensus       156 L~~~~-i~~~~~~~l~~~~-~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~  207 (357)
                      +++|. +++ ..+..+.++ ++|+.|+++++ .+..++.. .++|+.|.+.++..
T Consensus       186 L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          186 LNKNKYLTV-IDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             CTTCTTCCE-ECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred             cCCCCCccc-CCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence            99994 743 123456778 99999999764 45555544 67889998887743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=1.5e-12  Score=117.21  Aligned_cols=159  Identities=15%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             cCCCccEEEeeccccCC--CCCc--cCCCCCceEEeeccccCHH--HHHHHHc-CCCCccEEeeecCCCCCcc---CcCC
Q 018344           34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDE--VIRDMVA-GCPLIEYININNCPGLKSL---QLLG  103 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--p~~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~~~L~~L~L~~c~~l~~l---~l~~  103 (357)
                      ++++|++|+|++|.+..  |..+  ..+++|++|+|++|.++..  .+..+.. ..++|++|++++|.. ..+   .+.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence            56677777777776653  4433  6677777777777766332  1111111 126777777777652 222   2344


Q ss_pred             CCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeec
Q 018344          104 LNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLAL  181 (357)
Q Consensus       104 ~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l  181 (357)
                      +++|++|++++|. ....+.               .+....+.++++|++|++++|.+++  ......+.++++|+.|++
T Consensus       172 l~~L~~L~Ls~N~-l~~~~~---------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          172 FPALSTLDLSDNP-ELGERG---------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL  235 (312)
T ss_dssp             CSSCCEEECCSCT-TCHHHH---------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred             CCCCCEEECCCCC-cCcchH---------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence            5677777777665 111100               0000112455566666666666642  223344455666666666


Q ss_pred             ccccccccccc--c--cccccEEEccccccccc
Q 018344          182 HYCMKLRSINI--S--SPRLKELVFERCEELVE  210 (357)
Q Consensus       182 ~~~~~l~~l~~--~--~~~L~~L~l~~c~~L~~  210 (357)
                      +++.-....+.  .  .++|+.|+++++ .+++
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~  267 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ  267 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSS
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCC-ccCh
Confidence            54432221111  1  355666666665 4443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.29  E-value=2.7e-12  Score=113.22  Aligned_cols=166  Identities=20%  Similarity=0.150  Sum_probs=84.2

Q ss_pred             cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---cCCCCCccEE
Q 018344           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLKEI  110 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l~~~~~L~~L  110 (357)
                      .+++|+.|+++++.+.....+..+++|++|++++|.+..-  + .+..+++|++|++++|. ++.+.   +.++++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence            3455666666665554433455566666666666555321  1 23455566666666553 22221   2344556666


Q ss_pred             EecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344          111 KLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (357)
Q Consensus       111 ~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  186 (357)
                      ++++|... ... ....+++|++|+++++.+..  ...+.++++|+.|++++|.+++ ..+..+.++++|+.|++++|. 
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-  192 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ-  192 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc-
Confidence            66655421 110 01124556666665532221  1124566677777777776643 122335667777777775543 


Q ss_pred             cccccc----ccccccEEEcccc
Q 018344          187 LRSINI----SSPRLKELVFERC  205 (357)
Q Consensus       187 l~~l~~----~~~~L~~L~l~~c  205 (357)
                      +..++.    ..++|+.|+++++
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCHHHHhCCcCCCEEEccCC
Confidence            323322    1456777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.29  E-value=2.5e-12  Score=114.54  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++++++....+|..+.  +++++|+|++|.+..  +..+.++++|++|+|++|.++.-  +. .+.+++|++|++++|. 
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~-   88 (290)
T 1p9a_G           15 VNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQ-   88 (290)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSC-
T ss_pred             EECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--cC-CCCCCcCCEEECCCCc-
Confidence            4556666777887664  578888888887655  44677888888888888876421  11 1567888888888775 


Q ss_pred             CCccC--cCCCCCccEEEecccC
Q 018344           96 LKSLQ--LLGLNKLKEIKLDSNR  116 (357)
Q Consensus        96 l~~l~--l~~~~~L~~L~l~~c~  116 (357)
                      ++.++  +.++++|++|++++|.
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~  111 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNR  111 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSC
T ss_pred             CCcCchhhccCCCCCEEECCCCc
Confidence            33332  2345778888887776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.28  E-value=6.3e-13  Score=119.68  Aligned_cols=188  Identities=16%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             hCCCeEEEEEecCCcce-ecCccc--ccCCCccEEEeeccccCC-CCCccCC-----CCCceEEeeccccCHHHHHHHHc
Q 018344           10 ASNVKELKLDVGCCRIY-NLPQIV--FYLKSIYVLDFEFCKLEP-PRSTVTL-----FSLRKLCLSFVHVDDEVIRDMVA   80 (357)
Q Consensus        10 ~~~v~~l~l~~~~~~~~-~lP~~i--~~~~~L~~L~Ls~~~~~~-p~~~~~l-----~~L~~L~L~~~~~~~~~l~~l~~   80 (357)
                      ...+++|++.  ++... .+|..+  ..+++|++|+|++|.+.. |..+..+     ++|++|+|++|.+... .+..++
T Consensus        94 l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~  170 (312)
T 1wwl_A           94 ISGLQELTLE--NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR  170 (312)
T ss_dssp             TSCCCEEEEE--EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred             cCCccEEEcc--CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence            4567777764  43343 678776  679999999999998766 5555665     9999999999987432 123467


Q ss_pred             CCCCccEEeeecCCCCCc------cCcCCCCCccEEEecccCCC-ccee----EeecceeeEEEEeecCCCc---eeecc
Q 018344           81 GCPLIEYININNCPGLKS------LQLLGLNKLKEIKLDSNRCG-LERV----YINGVNVHSVDIKVYLEPC---EVNVS  146 (357)
Q Consensus        81 ~~~~L~~L~L~~c~~l~~------l~l~~~~~L~~L~l~~c~~~-l~~~----~~~~p~L~~L~l~~~~~~~---~~~~~  146 (357)
                      .+++|++|++++|.....      +....+++|++|++++|... ...+    ....++|++|+++++.+..   ...+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            899999999999874322      22256789999999999731 1121    1134688888887753321   12344


Q ss_pred             ccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEcccc
Q 018344          147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERC  205 (357)
Q Consensus       147 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~c  205 (357)
                      .+++|+.|++++|.++  .++..+.  ++|+.|+++++ .+..++..  .++|+.|+++++
T Consensus       251 ~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred             hcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence            5677888888888775  2222222  67888888654 34443332  456777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=1.1e-12  Score=118.28  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=80.9

Q ss_pred             ecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc
Q 018344           20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL   99 (357)
Q Consensus        20 ~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l   99 (357)
                      ++++....+|.    .++|++|++++|.+... ....+++|++|++++|.++.. .+..+..+++|++|++++|. ++..
T Consensus        87 Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~  159 (317)
T 3o53_A           87 LNNNYVQELLV----GPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE-IDTV  159 (317)
T ss_dssp             CCSSEEEEEEE----CTTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSC-CCEE
T ss_pred             CcCCccccccC----CCCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCC-CCcc
Confidence            34444444442    35667777766665441 122356677777776665321 01123456667777776654 2221


Q ss_pred             C---c-CCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344          100 Q---L-LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP  174 (357)
Q Consensus       100 ~---l-~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  174 (357)
                      .   + ..+++|++|++++|...-.......++|++|+++++.+.. ...+..+++|+.|++++|.+++  ++..+..++
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~  237 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ  237 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhHhhcCC
Confidence            1   1 1345666666666652111111235666666666643321 1235556666666666666642  333355666


Q ss_pred             ccceeeccccc
Q 018344          175 FLEYLALHYCM  185 (357)
Q Consensus       175 ~L~~L~l~~~~  185 (357)
                      +|+.|++++++
T Consensus       238 ~L~~L~l~~N~  248 (317)
T 3o53_A          238 NLEHFDLRGNG  248 (317)
T ss_dssp             TCCEEECTTCC
T ss_pred             CCCEEEccCCC
Confidence            66666665544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.28  E-value=4.2e-12  Score=124.19  Aligned_cols=158  Identities=17%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             cCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC
Q 018344           21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (357)
Q Consensus        21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~  100 (357)
                      +.+....+| .+..+++|+.|+|++|.+.....+..+++|++|+|++|.+..  ++ .+..+++|+.|+|++|..-..-.
T Consensus        51 ~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~~  126 (605)
T 1m9s_A           51 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDING  126 (605)
T ss_dssp             TTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCGG
T ss_pred             cCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCcc
Confidence            344444454 355566666666666665552235666666666666665532  11 24556666666666665222112


Q ss_pred             cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceee
Q 018344          101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA  180 (357)
Q Consensus       101 l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  180 (357)
                      +..+++|+.|++++|...-......+++|+.|+++++.+.....+..+++|+.|+|++|.+++-   ..+..+++|+.|+
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~  203 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLE  203 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEE
T ss_pred             ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---hHHccCCCCCEEE
Confidence            3445666666666665211111123456666666654332111255556666666666665431   1245566666666


Q ss_pred             ccccc
Q 018344          181 LHYCM  185 (357)
Q Consensus       181 l~~~~  185 (357)
                      +++|.
T Consensus       204 L~~N~  208 (605)
T 1m9s_A          204 LFSQE  208 (605)
T ss_dssp             CCSEE
T ss_pred             ccCCc
Confidence            65443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=6.4e-12  Score=110.64  Aligned_cols=170  Identities=19%  Similarity=0.185  Sum_probs=123.7

Q ss_pred             CCCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..+++|+  ++++....+|. .+.++++|++|++++|.+.. | ..+.++++|++|++++|.+... ....+..+++|++
T Consensus        37 ~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLD--LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEE--CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred             CCCCEEE--CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence            3456655  56666777876 56779999999999998766 4 3567899999999999987421 1234567899999


Q ss_pred             EeeecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccc
Q 018344           88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~  160 (357)
                      |++++|. ++.+.   +..+++|++|++++|.. .... ....+++|++|+++++.+..  ...+.++++|+.|++++|.
T Consensus       114 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            9999986 33332   45678999999999973 1111 12247899999998854331  1246788999999999998


Q ss_pred             cCHHHHHHHhccCCccceeeccccc
Q 018344          161 ITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       161 i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      +++ ..+..+..+++|+.|++++++
T Consensus       193 l~~-~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          193 LKR-VPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCc-CCHHHhccccCCCEEEecCCC
Confidence            854 223356789999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=4.3e-12  Score=106.31  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=91.7

Q ss_pred             ccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCC--ccCcCCCCCccE
Q 018344           33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK--SLQLLGLNKLKE  109 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~--~l~l~~~~~L~~  109 (357)
                      ..+++|++|+++++.+.. | .+..+++|++|++++|.+..-  + .+..+++|++|++++|..-.  .-.+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            346677777777776655 4 566777777777777755221  1 34567777777777765321  123445567777


Q ss_pred             EEecccCCCc--ceeEeecceeeEEEEeecC-CCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccc
Q 018344          110 IKLDSNRCGL--ERVYINGVNVHSVDIKVYL-EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (357)
Q Consensus       110 L~l~~c~~~l--~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~  184 (357)
                      |++++|...-  ......+++|++|+++++. +.....+.++++|+.|++++|.+++  ++ .+..+++|+.|+++++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCc
Confidence            7777766211  1111235677777777653 3211256778899999999998865  22 5788999999999654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.26  E-value=4.8e-12  Score=110.18  Aligned_cols=163  Identities=18%  Similarity=0.188  Sum_probs=104.3

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.++.....+|..+.  ++++.|+|+++.+..  +..+.++++|++|+|++|.++.. .+..+..+++|++|++++|.
T Consensus        18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred             EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence            35667777888998765  589999999998766  44688999999999999987432 13345678999999999976


Q ss_pred             CCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhc
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS  171 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  171 (357)
                       ++.+.   +.++++|++|++++|..  ..+                 + ...+.++++|+.|++++|.+++ ..+..+.
T Consensus        95 -l~~~~~~~~~~l~~L~~L~L~~N~l--~~~-----------------~-~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~  152 (251)
T 3m19_A           95 -LASLPLGVFDHLTQLDKLYLGGNQL--KSL-----------------P-SGVFDRLTKLKELRLNTNQLQS-IPAGAFD  152 (251)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCC--CCC-----------------C-TTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred             -ccccChhHhcccCCCCEEEcCCCcC--CCc-----------------C-hhHhccCCcccEEECcCCcCCc-cCHHHcC
Confidence             33332   34568899999988861  111                 1 0123455566666666666532 1112345


Q ss_pred             cCCccceeecccccccccccc----ccccccEEEcccc
Q 018344          172 ELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (357)
Q Consensus       172 ~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c  205 (357)
                      ++++|+.|+++++. +..++.    ..++|+.|+++++
T Consensus       153 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          153 KLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            56666666665432 323222    1345666666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.26  E-value=6.6e-12  Score=110.68  Aligned_cols=170  Identities=18%  Similarity=0.164  Sum_probs=122.9

Q ss_pred             hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ...++++.+  +++....++ .+..+++|++|++++|.+.....+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        40 l~~L~~L~l--~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIA--NNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccceeeeee--CCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            345666654  455455555 4778999999999999887755788999999999999987421 133357789999999


Q ss_pred             eecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccC
Q 018344           90 INNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        90 L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      +++|. ++.+.   +.++++|++|++++|.. .... ....+++|++|+++++.+..  ...+.++++|+.|++++|.++
T Consensus       116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99986 33332   45678999999999873 1111 12247899999998864431  123577899999999999886


Q ss_pred             HHHHHHHhccCCccceeeccccc
Q 018344          163 DKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       163 ~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      + ..+..+..+++|+.|++++++
T Consensus       195 ~-~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          195 S-VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             C-CCTTTTTTCTTCCEEECCSSC
T ss_pred             c-cCHHHHhCCcCCCEEEccCCC
Confidence            4 223456889999999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.25  E-value=5.3e-12  Score=114.56  Aligned_cols=189  Identities=20%  Similarity=0.196  Sum_probs=117.8

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.+  +++++....+|+ .+.++++|++|++++|.+..  |..+.++++|++|++++|.+..  ++.  ...++|++|
T Consensus        55 ~l~~L--~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L  128 (332)
T 2ft3_A           55 DTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVEL  128 (332)
T ss_dssp             TCCEE--ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEE
T ss_pred             CCeEE--ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEE
Confidence            45554  556666777754 67789999999999998765  5578899999999999997741  221  123789999


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      ++++|.. +.+.   +.++++|++|++++|...   .....+...+|++|++++..+.. ....-.++|++|++++|.++
T Consensus       129 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          129 RIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQ  206 (332)
T ss_dssp             ECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCC
T ss_pred             ECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccccCCCCEEECCCCcCC
Confidence            9998763 3332   456789999999988731   11111122267777776643221 00011256777777777664


Q ss_pred             HHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccccccccc
Q 018344          163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEF  211 (357)
Q Consensus       163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~  211 (357)
                      +. .+..+.++++|+.|+++++. +..++.    ..++|++|+++++ .++.+
T Consensus       207 ~~-~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l  256 (332)
T 2ft3_A          207 AI-ELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRV  256 (332)
T ss_dssp             CC-CTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBC
T ss_pred             cc-CHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeec
Confidence            32 12335667777777776543 322221    1466777777776 45543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.24  E-value=3.2e-11  Score=106.41  Aligned_cols=188  Identities=18%  Similarity=0.184  Sum_probs=128.2

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++++  +++++....+|. .+.++++|++|++++|.+..  +..+.++++|++|+|++|.+.... ...+..+++|++|
T Consensus        29 ~l~~L--~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEE--ECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred             CccEE--ECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEE
Confidence            45555  457777777776 66779999999999997765  346888999999999999774321 2345678999999


Q ss_pred             eeecCCC--CCccCcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCCCc--eeecccccccc----ceeec
Q 018344           89 NINNCPG--LKSLQLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLT----HLRLD  157 (357)
Q Consensus        89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~----~L~L~  157 (357)
                      ++++|..  +....+..+++|++|++++|...   +.......++|++|+++++.+..  ...+..+++|+    .|+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            9998863  22224566789999999998731   12223346899999998865431  12344555666    78888


Q ss_pred             ccccCHHHHHHHhccCCccceeeccccccccccccc----cccccEEEcccc
Q 018344          158 GLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERC  205 (357)
Q Consensus       158 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c  205 (357)
                      +|.+++  ++.......+|+.|+++++. +..++..    .++|++|+++++
T Consensus       186 ~n~l~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          186 LNPMNF--IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             SSCCCE--ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCcccc--cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            888753  22222334589999997654 5444432    467778877765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.24  E-value=3.5e-12  Score=124.09  Aligned_cols=223  Identities=16%  Similarity=0.170  Sum_probs=142.0

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ..++.+++  +++....+|..+..+ +|++|++++|.+.. |.  ..+++|++|++++|.+.... .  ...+++|++|+
T Consensus       282 ~~L~~L~l--~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~  353 (570)
T 2z63_A          282 TNVSSFSL--VSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLD  353 (570)
T ss_dssp             TTCSEEEE--ESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEE
T ss_pred             CcccEEEe--cCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc-c--cccCCCCCEEe
Confidence            45666655  555667899988888 99999999998765 32  57889999999988763211 1  15788899999


Q ss_pred             eecCCCCCcc-----CcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCC---Cceeeccccccccceeecccc
Q 018344           90 INNCPGLKSL-----QLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLE---PCEVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        90 L~~c~~l~~l-----~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~~L~~L~L~~~~  160 (357)
                      +++|.. ...     .+.++++|++|++++|.. ........+++|++|++++...   +....+.++++|+.|++++|.
T Consensus       354 l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          354 LSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             CCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred             CcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence            988763 221     234567888888888862 1122233477888888877422   111245677888888888887


Q ss_pred             cCHHHHHHHhccCCccceeeccccccc-cccccc---cccccEEEccccccccccc---c-cCCCcceEEeeeee----e
Q 018344          161 ITDKWLYNQISELPFLEYLALHYCMKL-RSINIS---SPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----E  228 (357)
Q Consensus       161 i~~~~~~~l~~~~~~L~~L~l~~~~~l-~~l~~~---~~~L~~L~l~~c~~L~~~~---i-~~~~L~~~~~~~~~----~  228 (357)
                      +.+. .+..+.++++|+.|++++|... ..++..   .++|+.|++++| .++++.   + ..++|+.+...+..    +
T Consensus       433 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          433 TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence            6432 2345677888888888776543 234322   567888888887 555442   2 23556666554432    1


Q ss_pred             e-EecccccceeEEEEE
Q 018344          229 S-FSSNALALSQTLLCF  244 (357)
Q Consensus       229 ~-~~~~~~~L~~~~l~~  244 (357)
                      . .......++.++++.
T Consensus       511 ~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             TTTTTTCTTCCEEECCS
T ss_pred             HHHhhcccCCcEEEecC
Confidence            1 112345677777643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.24  E-value=4.2e-12  Score=111.38  Aligned_cols=154  Identities=19%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             cCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-
Q 018344           21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-   99 (357)
Q Consensus        21 ~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-   99 (357)
                      +.+....++ .+..+++|++|++++|.+.....+..+++|++|+|++|.++..  +. +..+++|++|++++|. ++.+ 
T Consensus        27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~-l~~l~  101 (263)
T 1xeu_A           27 GKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNR-LKNLN  101 (263)
T ss_dssp             TCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSC-CSCCT
T ss_pred             cCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCc-cCCcC
Confidence            334444555 4566888889998888776633677888899999988877432  22 6788888888888876 3333 


Q ss_pred             CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCcccee
Q 018344          100 QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL  179 (357)
Q Consensus       100 ~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L  179 (357)
                      .+.. ++|++|++++|...-......+++|+.|+++++.+.....+..+++|+.|++++|.+++.   ..+..+++|+.|
T Consensus       102 ~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L  177 (263)
T 1xeu_A          102 GIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWI  177 (263)
T ss_dssp             TCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEE
T ss_pred             cccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEE
Confidence            2223 678888888776211011112444555555443322111344445555555555555332   234445555555


Q ss_pred             eccc
Q 018344          180 ALHY  183 (357)
Q Consensus       180 ~l~~  183 (357)
                      ++++
T Consensus       178 ~l~~  181 (263)
T 1xeu_A          178 DLTG  181 (263)
T ss_dssp             EEEE
T ss_pred             eCCC
Confidence            5543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=1.1e-11  Score=121.14  Aligned_cols=166  Identities=17%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             ccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEe
Q 018344           33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL  112 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l  112 (357)
                      ..+++|+.|++++|.+.....+..+++|++|+|++|.+...  +. +..+++|+.|+|++|..-..-.+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            45789999999999887744788999999999999988432  22 7789999999999986322224556789999999


Q ss_pred             cccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc
Q 018344          113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI  192 (357)
Q Consensus       113 ~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~  192 (357)
                      ++|...-......+++|+.|+++++.+.....+..+++|+.|+|++|.+++.. +  +..+++|+.|+|++| .+..++.
T Consensus       117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N-~i~~l~~  192 (605)
T 1m9s_A          117 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQNLYLSKN-HISDLRA  192 (605)
T ss_dssp             TTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCCEEECCSS-CCCBCGG
T ss_pred             cCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-h--hccCCCCCEEECcCC-CCCCChH
Confidence            99973111112347899999999865542245778899999999999986532 2  789999999999766 4444443


Q ss_pred             c--cccccEEEcccc
Q 018344          193 S--SPRLKELVFERC  205 (357)
Q Consensus       193 ~--~~~L~~L~l~~c  205 (357)
                      .  .++|+.|++++|
T Consensus       193 l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GTTCTTCSEEECCSE
T ss_pred             HccCCCCCEEEccCC
Confidence            2  578999999987

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=1.4e-11  Score=103.08  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=92.3

Q ss_pred             CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCc--ceeEeeccee
Q 018344           53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGL--ERVYINGVNV  129 (357)
Q Consensus        53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l--~~~~~~~p~L  129 (357)
                      ....+++|++|+++++.+..  ++ -+..+++|++|++++|. ++.+ .+..+++|++|++++|...-  ......+++|
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             ChhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            34567888888888887642  22 25677888888888874 3333 44566788888888876311  1122246788


Q ss_pred             eEEEEeecCCCc--eeeccccccccceeecccc-cCHHHHHHHhccCCccceeeccccccccccccc--cccccEEEccc
Q 018344          130 HSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFER  204 (357)
Q Consensus       130 ~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~~  204 (357)
                      ++|+++++.+..  ...+..+++|++|++++|. +++-  + .+.++++|+.|++++|. +..++..  .++|+.|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeC
Confidence            888887754331  2345677788888888886 5432  2 46778888888886553 3333321  46677777766


Q ss_pred             c
Q 018344          205 C  205 (357)
Q Consensus       205 c  205 (357)
                      +
T Consensus       191 N  191 (197)
T 4ezg_A          191 Q  191 (197)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.22  E-value=9.5e-12  Score=115.30  Aligned_cols=196  Identities=19%  Similarity=0.163  Sum_probs=137.0

Q ss_pred             CCCeEEEEEecCCcce-----ecCcccccCCCccEEEeeccccCC-----CCC-------ccCCCCCceEEeeccccCHH
Q 018344           11 SNVKELKLDVGCCRIY-----NLPQIVFYLKSIYVLDFEFCKLEP-----PRS-------TVTLFSLRKLCLSFVHVDDE   73 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~-----~lP~~i~~~~~L~~L~Ls~~~~~~-----p~~-------~~~l~~L~~L~L~~~~~~~~   73 (357)
                      ..++.|++  +++...     .++..+..+++|++|+|++|....     |..       +..+++|++|+|++|.++..
T Consensus        32 ~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVL--SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEEC--TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEEC--CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            45666654  554332     255556789999999999975432     222       26889999999999998543


Q ss_pred             ---HHHHHHcCCCCccEEeeecCCCCCcc---C----cCCC---------CCccEEEecccCCCccee------Eeecce
Q 018344           74 ---VIRDMVAGCPLIEYININNCPGLKSL---Q----LLGL---------NKLKEIKLDSNRCGLERV------YINGVN  128 (357)
Q Consensus        74 ---~l~~l~~~~~~L~~L~L~~c~~l~~l---~----l~~~---------~~L~~L~l~~c~~~l~~~------~~~~p~  128 (357)
                         .++..+..+++|++|+|++|.. ...   .    +..+         ++|++|++++|...-..+      ...+++
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence               4566678899999999999873 211   1    1122         699999999997321111      124679


Q ss_pred             eeEEEEeecCCC------cee-eccccccccceeecccccCH---HHHHHHhccCCccceeeccccccccc----cccc-
Q 018344          129 VHSVDIKVYLEP------CEV-NVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKLRS----INIS-  193 (357)
Q Consensus       129 L~~L~l~~~~~~------~~~-~~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~L~~L~l~~~~~l~~----l~~~-  193 (357)
                      |++|.++++.+.      ... .+..+++|+.|++++|.+++   ..++..+..+++|+.|++++|.--..    ++.. 
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            999999886543      112 56678899999999999975   44566788999999999987753211    1221 


Q ss_pred             ----cccccEEEccccccccc
Q 018344          194 ----SPRLKELVFERCEELVE  210 (357)
Q Consensus       194 ----~~~L~~L~l~~c~~L~~  210 (357)
                          .++|++|++++| .++.
T Consensus       269 ~~~~~~~L~~L~L~~n-~i~~  288 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYN-EIEL  288 (386)
T ss_dssp             HTCSSCCCCEEECCSS-CCBH
T ss_pred             hhccCCCeEEEECcCC-cCCH
Confidence                578999999998 5665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.21  E-value=1.5e-10  Score=106.32  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             EecCCccee-cCcccccCCCccEEEeeccccCC-C-----CCccCCC-CCceEEeeccccCH---HHHHHHHcCC-CCcc
Q 018344           19 DVGCCRIYN-LPQIVFYLKSIYVLDFEFCKLEP-P-----RSTVTLF-SLRKLCLSFVHVDD---EVIRDMVAGC-PLIE   86 (357)
Q Consensus        19 ~~~~~~~~~-lP~~i~~~~~L~~L~Ls~~~~~~-p-----~~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-~~L~   86 (357)
                      +++.+.... +|..+...++|++|+|++|.+.. +     ..+.+++ +|++|+|++|.+++   ..+...+... ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            344444443 34444445669999999998765 2     3456788 89999999998743   3444444554 8999


Q ss_pred             EEeeecCCCCCccC-------cCCC-CCccEEEecccC
Q 018344           87 YININNCPGLKSLQ-------LLGL-NKLKEIKLDSNR  116 (357)
Q Consensus        87 ~L~L~~c~~l~~l~-------l~~~-~~L~~L~l~~c~  116 (357)
                      +|++++|. ++...       +..+ ++|++|++++|.
T Consensus        84 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           84 SLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             EEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             EEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            99999987 33221       2233 688888888886

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.19  E-value=2.6e-11  Score=107.93  Aligned_cols=174  Identities=17%  Similarity=0.103  Sum_probs=125.1

Q ss_pred             cccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccE
Q 018344           32 VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKE  109 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~  109 (357)
                      +.++++++.++++++.+.. |..+  .+++++|+|++|.++... +..+..+++|++|++++|. ++.+ ....+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence            4567899999999988776 5433  379999999999874321 2346789999999999986 4433 2245689999


Q ss_pred             EEecccCC-CcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHHHHhccCCccceeecccccc
Q 018344          110 IKLDSNRC-GLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (357)
Q Consensus       110 L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~  186 (357)
                      |++++|.. .+.......++|++|+++++.+..  ...+.++++|+.|++++|.++. ..+..+..+++|+.|+++++ .
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N-~  159 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANN-N  159 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTS-C
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCC-c
Confidence            99999873 222222347889999998854431  1347788999999999998853 22345678899999999755 4


Q ss_pred             ccccccc----cccccEEEccccccccccc
Q 018344          187 LRSINIS----SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       187 l~~l~~~----~~~L~~L~l~~c~~L~~~~  212 (357)
                      +..++..    .++|+.|+++++ .++.+.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip  188 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQEN-SLYTIP  188 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCC-cCCccC
Confidence            5555532    578999999888 566543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=1.7e-11  Score=110.12  Aligned_cols=82  Identities=18%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CCCccEEEeeccccCC--CCCc--cCCCCCceEEeeccccCHHH--H-HHHHcCCCCccEEeeecCCCCCc--cCcCCCC
Q 018344           35 LKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDEV--I-RDMVAGCPLIEYININNCPGLKS--LQLLGLN  105 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~--p~~~--~~l~~L~~L~L~~~~~~~~~--l-~~l~~~~~~L~~L~L~~c~~l~~--l~l~~~~  105 (357)
                      +++|++|++++|.+..  |..+  ..+++|++|+|++|.++...  + ..-+..+++|++|++++|..-..  -.+.+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4568888888887654  4444  77888888888888774310  1 12234688888888888764221  1234567


Q ss_pred             CccEEEecccC
Q 018344          106 KLKEIKLDSNR  116 (357)
Q Consensus       106 ~L~~L~l~~c~  116 (357)
                      +|++|++++|.
T Consensus       170 ~L~~L~Ls~N~  180 (310)
T 4glp_A          170 ALTSLDLSDNP  180 (310)
T ss_dssp             TCCEEECCSCT
T ss_pred             CCCEEECCCCC
Confidence            88888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.15  E-value=5.9e-11  Score=100.12  Aligned_cols=163  Identities=18%  Similarity=0.180  Sum_probs=100.7

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++........+|..+  .++|++|+++++.+.. + ..+.++++|++|++++|.++.. ....+..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc
Confidence            3455666677888765  3589999999998766 3 3567899999999999977421 12335678999999999886


Q ss_pred             CCCccC---cCCCCCccEEEecccCCC-cce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRCG-LER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~~-l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                       ++.+.   +.++++|++|++++|... ... .....++|++|+++++.+..  ...+..+++|+.|++++|.+.     
T Consensus        88 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           88 -LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             -CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence             33332   345688999999888621 111 11224566666665532211  112445566666666666552     


Q ss_pred             HHhccCCccceeeccccccccccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSIN  191 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~  191 (357)
                         ..++.|+.|+++.+.....+|
T Consensus       162 ---~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTTTBB
T ss_pred             ---cCCCCHHHHHHHHHhCCceee
Confidence               345566666654443333333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.08  E-value=8.2e-11  Score=107.54  Aligned_cols=190  Identities=16%  Similarity=0.131  Sum_probs=122.6

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++.++....++|..+.  +++++|+|++|.+.. | ..+.++++|++|+|++|.+....-...+.++++++++...++..
T Consensus        14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            5566677788898763  689999999988766 4 46789999999999999762211122345778877766655555


Q ss_pred             CCccC---cCCCCCccEEEecccCC-Cccee-EeecceeeEEEEeec-CCCc--eeecccc-ccccceeecccccCHHHH
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRC-GLERV-YINGVNVHSVDIKVY-LEPC--EVNVSSC-KNLTHLRLDGLSITDKWL  166 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~-~l~~~-~~~~p~L~~L~l~~~-~~~~--~~~~~~~-~~L~~L~L~~~~i~~~~~  166 (357)
                      ++.+.   +.++++|++|++++|.. ..... ......+..+.+.+. .+..  ...+.++ ..++.|++++|.++.  +
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i  169 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--I  169 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--E
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--C
Confidence            66553   34568899999998863 12211 223445666776552 2210  1123333 357788888887743  2


Q ss_pred             HHHhccCCccceeeccccccccccccc----cccccEEEccccccccccc
Q 018344          167 YNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       167 ~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~L~~~~  212 (357)
                      +......++|+.+++.+++.++.++..    .++|+.|+++++ +++.+.
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp  218 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  218 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence            222334567888888777777777642    567888888887 666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.08  E-value=2e-10  Score=98.42  Aligned_cols=141  Identities=18%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++.+......+|..+.  ++|++|+|++|.+..  |..+.++++|++|+|++|.+..- ....+..+++|++|+|++|. 
T Consensus        24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-   99 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ-   99 (229)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred             eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-
Confidence            5566677788887664  789999999998766  55678899999999999987321 12335678899999999875 


Q ss_pred             CCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhcc
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISE  172 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  172 (357)
                      ++.+.   +..+++|++|++++|..  .                 .+|  ..+..+++|+.|++++|.++.- ....+..
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l--~-----------------~lp--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~  157 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKL--T-----------------ELP--RGIERLTHLTHLALDQNQLKSI-PHGAFDR  157 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCC--C-----------------SCC--TTGGGCTTCSEEECCSSCCCCC-CTTTTTT
T ss_pred             CCccChhHhCcchhhCeEeccCCcc--c-----------------ccC--cccccCCCCCEEECCCCcCCcc-CHHHHhC
Confidence            44432   34567888888887761  0                 111  2334556666666666665421 1133455


Q ss_pred             CCccceeecccc
Q 018344          173 LPFLEYLALHYC  184 (357)
Q Consensus       173 ~~~L~~L~l~~~  184 (357)
                      +++|+.|+++++
T Consensus       158 l~~L~~L~l~~N  169 (229)
T 3e6j_A          158 LSSLTHAYLFGN  169 (229)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEEeeCC
Confidence            666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.08  E-value=9.7e-10  Score=107.96  Aligned_cols=142  Identities=22%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.++.....+|..+-  +++++|+|++|.+..  +..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|.
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc
Confidence            34555556778887653  479999999998766  45789999999999999977421 12346789999999999986


Q ss_pred             CCCccC---cCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI  170 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  170 (357)
                       ++.+.   +.++++|++|++++|.. .+..                     ..++++++|++|++++|.++....+..+
T Consensus       112 -l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~---------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~  169 (635)
T 4g8a_A          112 -IQSLALGAFSGLSSLQKLVAVETNLASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYF  169 (635)
T ss_dssp             -CCEECGGGGTTCTTCCEEECTTSCCCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             -CCCCCHHHhcCCCCCCEEECCCCcCCCCCh---------------------hhhhcCcccCeeccccCccccCCCchhh
Confidence             55543   45678999999998861 1111                     1344555566666665555332233344


Q ss_pred             ccCCccceeeccc
Q 018344          171 SELPFLEYLALHY  183 (357)
Q Consensus       171 ~~~~~L~~L~l~~  183 (357)
                      +++++|+.|++++
T Consensus       170 ~~l~~L~~L~L~~  182 (635)
T 4g8a_A          170 SNLTNLEHLDLSS  182 (635)
T ss_dssp             GGCTTCCEEECCS
T ss_pred             ccchhhhhhcccC
Confidence            5556666666644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.07  E-value=2.1e-10  Score=111.12  Aligned_cols=176  Identities=14%  Similarity=0.113  Sum_probs=122.1

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      .+++.++  ++++....+|..++  ++|++|+|++|.+.. |   ..+++|++|+|++|.++.  ++. +..  +|++|+
T Consensus        59 ~~L~~L~--Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQ--LNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEE--CCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEE
T ss_pred             CCccEEE--eCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEE
Confidence            3566665  46666777998774  789999999998876 4   568999999999998743  343 332  899999


Q ss_pred             eecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHH
Q 018344           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (357)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l  169 (357)
                      +++|. ++.++- .+++|+.|++++|..  ..+....++|++|+++++.+.....+.  ++|+.|++++|.++.  ++. 
T Consensus       127 Ls~N~-l~~lp~-~l~~L~~L~Ls~N~l--~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~--lp~-  197 (571)
T 3cvr_A          127 VDNNQ-LTMLPE-LPALLEYINADNNQL--TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLES--LPA-  197 (571)
T ss_dssp             CCSSC-CSCCCC-CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSS--CCC-
T ss_pred             CCCCc-CCCCCC-cCccccEEeCCCCcc--CcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCc--hhh-
Confidence            99986 444544 568999999999873  112225678999999886443111133  789999999998852  222 


Q ss_pred             hcc-----CCccceeeccccccccccccc---cccccEEEcccccccc
Q 018344          170 ISE-----LPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELV  209 (357)
Q Consensus       170 ~~~-----~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~  209 (357)
                      +..     .+.|+.|++++| .+..+|..   .++|+.|+++++ .++
T Consensus       198 ~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N-~l~  243 (571)
T 3cvr_A          198 VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN-PLS  243 (571)
T ss_dssp             CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS-SCC
T ss_pred             HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC-cCC
Confidence            222     222399999654 45555543   578899999988 454

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.06  E-value=1.4e-10  Score=98.85  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.++.....+|..+.  ++|+.|+++++.+..  +..+..+++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc
Confidence            35667777888998765  689999999998766  44788899999999999987422 13346778999999999876


Q ss_pred             CCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhc
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS  171 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  171 (357)
                       ++.+.   +.++++|++|++++|..  ..+                .+  ..+.++++|+.|++++|.++.- .+..+.
T Consensus        92 -l~~l~~~~f~~l~~L~~L~L~~N~l--~~~----------------~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~  149 (220)
T 2v9t_B           92 -ITELPKSLFEGLFSLQLLLLNANKI--NCL----------------RV--DAFQDLHNLNLLSLYDNKLQTI-AKGTFS  149 (220)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSCC--CCC----------------CT--TTTTTCTTCCEEECCSSCCSCC-CTTTTT
T ss_pred             -CCccCHhHccCCCCCCEEECCCCCC--CEe----------------CH--HHcCCCCCCCEEECCCCcCCEE-CHHHHh
Confidence             44433   34567888888888761  000                01  2344555666666666655321 112344


Q ss_pred             cCCccceeecccc
Q 018344          172 ELPFLEYLALHYC  184 (357)
Q Consensus       172 ~~~~L~~L~l~~~  184 (357)
                      .+++|+.|+++++
T Consensus       150 ~l~~L~~L~L~~N  162 (220)
T 2v9t_B          150 PLRAIQTMHLAQN  162 (220)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCCCCCEEEeCCC
Confidence            5556666665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.06  E-value=5.3e-10  Score=90.81  Aligned_cols=129  Identities=18%  Similarity=0.138  Sum_probs=82.5

Q ss_pred             CCCccEEEeeccccC--C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccE
Q 018344           35 LKSIYVLDFEFCKLE--P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKE  109 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~--~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~  109 (357)
                      .++|++|++++|.+.  . |..+..+++|++|++++|.++..   ..+..+++|++|++++|..-..++  ...+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356788888877765  3 55567778888888888776432   345667778888887776322121  112467777


Q ss_pred             EEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH--HHHHHhccCCccceeeccccc
Q 018344          110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       110 L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      |++++|..                   ...+....+..+++|+.|++++|.+++.  .....+..+++|+.|++++|.
T Consensus       100 L~Ls~N~l-------------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          100 LNLSGNKL-------------------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EECBSSSC-------------------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EeccCCcc-------------------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            77776651                   0111002456678888999988887542  123477889999999987664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=1.5e-10  Score=106.20  Aligned_cols=190  Identities=16%  Similarity=0.131  Sum_probs=119.1

Q ss_pred             CCeEEEEEecCCcceecC-----cccccCC-CccEEEeeccccCC--CCCccCC-----CCCceEEeeccccCH---HHH
Q 018344           12 NVKELKLDVGCCRIYNLP-----QIVFYLK-SIYVLDFEFCKLEP--PRSTVTL-----FSLRKLCLSFVHVDD---EVI   75 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP-----~~i~~~~-~L~~L~Ls~~~~~~--p~~~~~l-----~~L~~L~L~~~~~~~---~~l   75 (357)
                      .+++|+  ++++.....+     ..+.+++ +|++|+|++|.+..  +..+..+     ++|++|+|++|.+++   ..+
T Consensus        23 ~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           23 GVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            366655  5676666666     3455677 89999999998765  2234443     999999999998743   444


Q ss_pred             HHHHcCC-CCccEEeeecCCCCCccCc-------CC-CCCccEEEecccCCCc---cee---Eeec-ceeeEEEEeecCC
Q 018344           76 RDMVAGC-PLIEYININNCPGLKSLQL-------LG-LNKLKEIKLDSNRCGL---ERV---YING-VNVHSVDIKVYLE  139 (357)
Q Consensus        76 ~~l~~~~-~~L~~L~L~~c~~l~~l~l-------~~-~~~L~~L~l~~c~~~l---~~~---~~~~-p~L~~L~l~~~~~  139 (357)
                      ...+..+ ++|++|++++|. ++....       .. ..+|++|++++|...-   ..+   .... ++|++|+++++.+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence            5555666 899999999987 333321       12 2589999999987211   111   0112 3788888877543


Q ss_pred             Cc------eeecccc-ccccceeecccccCH---HHHHHHhcc-CCccceeecccccccccccc--------ccccccEE
Q 018344          140 PC------EVNVSSC-KNLTHLRLDGLSITD---KWLYNQISE-LPFLEYLALHYCMKLRSINI--------SSPRLKEL  200 (357)
Q Consensus       140 ~~------~~~~~~~-~~L~~L~L~~~~i~~---~~~~~l~~~-~~~L~~L~l~~~~~l~~l~~--------~~~~L~~L  200 (357)
                      ..      ...+..+ ++|++|++++|.+++   ..+...+.. .++|+.|++++|. +...+.        ..++|+.|
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEE
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEE
Confidence            21      0122334 478888888887765   224444444 4578888886553 322211        14667778


Q ss_pred             Ecccc
Q 018344          201 VFERC  205 (357)
Q Consensus       201 ~l~~c  205 (357)
                      ++++|
T Consensus       259 ~L~~n  263 (362)
T 3goz_A          259 YLDYD  263 (362)
T ss_dssp             EEEHH
T ss_pred             EeccC
Confidence            77777

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.04  E-value=3.4e-10  Score=98.34  Aligned_cols=148  Identities=20%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.+  +++++....++. .+.++++|++|+|++|.+..  +..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus        36 ~l~~L--~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  112 (251)
T 3m19_A           36 DTEKL--DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL  112 (251)
T ss_dssp             TCCEE--ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCEE--EccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence            45555  456666666765 46679999999999998776  44678999999999999987422 12345789999999


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHH
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW  165 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~  165 (357)
                      ++++|. ++.+.   +.++++|++|++++|..  ..+                 + ...+.++++|+.|++++|.+++ .
T Consensus       113 ~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~~-~  170 (251)
T 3m19_A          113 YLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL--QSI-----------------P-AGAFDKLTNLQTLSLSTNQLQS-V  170 (251)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--CCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-C
T ss_pred             EcCCCc-CCCcChhHhccCCcccEEECcCCcC--Ccc-----------------C-HHHcCcCcCCCEEECCCCcCCc-c
Confidence            999985 44443   34568999999998862  111                 1 0123445556666666555532 1


Q ss_pred             HHHHhccCCccceeecccc
Q 018344          166 LYNQISELPFLEYLALHYC  184 (357)
Q Consensus       166 ~~~l~~~~~~L~~L~l~~~  184 (357)
                      .+..+..+++|+.|+++++
T Consensus       171 ~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSC
T ss_pred             CHHHHhCCCCCCEEEeeCC
Confidence            1223445556666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.03  E-value=5.9e-10  Score=88.64  Aligned_cols=125  Identities=16%  Similarity=0.098  Sum_probs=68.8

Q ss_pred             CCccEEEeeccccC--C-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccEE
Q 018344           36 KSIYVLDFEFCKLE--P-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEI  110 (357)
Q Consensus        36 ~~L~~L~Ls~~~~~--~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L  110 (357)
                      ++|++|++++|.+.  . |..+..+++|++|++++|.++..   ..++.+++|++|++++|..-..++  ...+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45666666666554  2 44455666666666666655322   334556666666666654221111  1124556666


Q ss_pred             EecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH--HHHHHhccCCccceeecc
Q 018344          111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALH  182 (357)
Q Consensus       111 ~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~l~  182 (357)
                      ++++|..  .                 ..+....+.++++|++|++++|.+++.  .....+..+++|+.|+++
T Consensus        94 ~ls~N~i--~-----------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKI--K-----------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCC--C-----------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcC--C-----------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6665540  0                 000002455677788888888877542  123467778888888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.02  E-value=6.4e-10  Score=99.79  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=103.8

Q ss_pred             cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHH-HHHH--HHcCCCCccEEeeecCCCCCccC------
Q 018344           32 VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDE-VIRD--MVAGCPLIEYININNCPGLKSLQ------  100 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~-~l~~--l~~~~~~L~~L~L~~c~~l~~l~------  100 (357)
                      +..+++|++|+|++|.+..  +..+.++++|++|+|++|.+... .++.  ....+++|++|++++|. ++.+.      
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence            3468899999999998765  45778999999999999986432 2222  12578999999999986 44322      


Q ss_pred             cCCCCCccEEEecccCC-Cc-ceeEee---cceeeEEEEeecCCCc-eeeccccccccceeecccccCHHHHHHHhccCC
Q 018344          101 LLGLNKLKEIKLDSNRC-GL-ERVYIN---GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITDKWLYNQISELP  174 (357)
Q Consensus       101 l~~~~~L~~L~l~~c~~-~l-~~~~~~---~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  174 (357)
                      +..+++|++|++++|.. .. +.....   .++|++|+++++.+.. ...+  .++|+.|++++|.+++-  +. +..++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~--~~-~~~l~  294 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA--PQ-PDELP  294 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC--CC-TTSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC--ch-hhhCC
Confidence            23458999999999873 11 111112   3799999998854431 1222  37899999999998642  22 57889


Q ss_pred             ccceeeccccc
Q 018344          175 FLEYLALHYCM  185 (357)
Q Consensus       175 ~L~~L~l~~~~  185 (357)
                      +|+.|++++++
T Consensus       295 ~L~~L~L~~N~  305 (310)
T 4glp_A          295 EVDNLTLDGNP  305 (310)
T ss_dssp             CCSCEECSSTT
T ss_pred             CccEEECcCCC
Confidence            99999997654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.01  E-value=3.7e-10  Score=98.92  Aligned_cols=146  Identities=12%  Similarity=0.168  Sum_probs=107.9

Q ss_pred             hCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        10 ~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ...++.++  ++++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.++.  ++.+ .. ++|++|+
T Consensus        40 l~~L~~L~--l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFN--GDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEE
T ss_pred             cCcCcEEE--CcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEE
Confidence            34566554  5666677888 678899999999999988772238899999999999998743  2222 23 8999999


Q ss_pred             eecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344           90 INNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        90 L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      +++|. ++.+ .+..+++|+.|++++|...-......+++|+.|+++++.+.....+..+++|+.|++++|.++.
T Consensus       113 L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          113 LDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred             ccCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccC
Confidence            99986 3333 4556789999999999731111222478999999998655422456788999999999998854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.00  E-value=3.5e-10  Score=96.29  Aligned_cols=143  Identities=20%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .++++++....+|..+..  .+++|+|++|.+..  + ..+.++++|++|+|++|.++.-. +..+..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence            567777778889986643  57899999988765  2 34788999999999999874321 224567899999999987


Q ss_pred             CCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344           94 PGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI  170 (357)
Q Consensus        94 ~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  170 (357)
                      .. +.+.   +.++++|++|++++|.. . .+                .+  ..+.++++|+.|++++|.+++- .+..+
T Consensus        92 ~l-~~~~~~~~~~l~~L~~L~Ls~N~l-~-~~----------------~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~  149 (220)
T 2v70_A           92 RL-ENVQHKMFKGLESLKTLMLRSNRI-T-CV----------------GN--DSFIGLSSVRLLSLYDNQITTV-APGAF  149 (220)
T ss_dssp             CC-CCCCGGGGTTCSSCCEEECTTSCC-C-CB----------------CT--TSSTTCTTCSEEECTTSCCCCB-CTTTT
T ss_pred             cc-CccCHhHhcCCcCCCEEECCCCcC-C-eE----------------CH--hHcCCCccCCEEECCCCcCCEE-CHHHh
Confidence            63 3322   44668888888888761 1 00                01  2344556666666666665331 12344


Q ss_pred             ccCCccceeecccc
Q 018344          171 SELPFLEYLALHYC  184 (357)
Q Consensus       171 ~~~~~L~~L~l~~~  184 (357)
                      ..+++|+.|+++++
T Consensus       150 ~~l~~L~~L~L~~N  163 (220)
T 2v70_A          150 DTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTCTTCCEEECCSC
T ss_pred             cCCCCCCEEEecCc
Confidence            55666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.94  E-value=2.8e-09  Score=104.64  Aligned_cols=124  Identities=21%  Similarity=0.261  Sum_probs=90.8

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .+++|  |++++....+|+ .+.++++|++|+|++|.+..  |..+.++++|++|+|++|.++.- .+..+.++++|++|
T Consensus        53 ~~~~L--dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEE--ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEE
T ss_pred             CCCEE--EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEE
Confidence            45554  567888889986 56679999999999998766  45689999999999999987431 12346789999999


Q ss_pred             eeecCCCCCcc---CcCCCCCccEEEecccCCC---cceeEeecceeeEEEEeecCC
Q 018344           89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCG---LERVYINGVNVHSVDIKVYLE  139 (357)
Q Consensus        89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~---l~~~~~~~p~L~~L~l~~~~~  139 (357)
                      ++++|. ++.+   .+.++++|++|++++|...   .......+++|++|+++++.+
T Consensus       130 ~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          130 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999986 3333   3567789999999998721   112222356677777766433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.93  E-value=1.3e-09  Score=89.37  Aligned_cols=132  Identities=16%  Similarity=0.029  Sum_probs=85.4

Q ss_pred             ccccCCCccEEEeeccccCCCCCccCC-CCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---cCCCCC
Q 018344           31 IVFYLKSIYVLDFEFCKLEPPRSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNK  106 (357)
Q Consensus        31 ~i~~~~~L~~L~Ls~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l~~~~~  106 (357)
                      .+.++.+|++|++++|.+.....+..+ ++|++|++++|.++.-   ..+..+++|++|++++|. ++.+.   +..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence            345677889999998877662234444 4888888888877432   235667788888888775 34332   134567


Q ss_pred             ccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeecccc
Q 018344          107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALHYC  184 (357)
Q Consensus       107 L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l~~~  184 (357)
                      |++|++++|..  .                 .++....+..+++|+.|++++|.+++  ......+..+|+|+.|+++.+
T Consensus        90 L~~L~L~~N~i--~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNNSL--V-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSCCC--C-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCCcC--C-----------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            77777777651  0                 11100145677888889998888754  111235778888898888765


Q ss_pred             c
Q 018344          185 M  185 (357)
Q Consensus       185 ~  185 (357)
                      .
T Consensus       151 ~  151 (176)
T 1a9n_A          151 K  151 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.92  E-value=1.7e-09  Score=98.82  Aligned_cols=194  Identities=11%  Similarity=0.019  Sum_probs=127.5

Q ss_pred             CCCeEEEEEecCCcceecCcc-cccCCCccEEEeeccccCC---CCCccCCCCCce-EEeeccccCHHHHHHHHcCCCCc
Q 018344           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRK-LCLSFVHVDDEVIRDMVAGCPLI   85 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~-L~L~~~~~~~~~l~~l~~~~~~L   85 (357)
                      +.+++|+  ++++....+|+. +.++++|++|+|++|.+..   +..+.+++++++ +.++.|.+..- .+..+..+++|
T Consensus        30 ~~l~~L~--Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELR--FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEE--EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEE--ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            4566665  567778899976 4569999999999998644   346788998886 45556655321 13346789999


Q ss_pred             cEEeeecCCCCCccC---cCCCCCccEEEecccCCCcceeEe----e-cceeeEEEEeecCCCc-eeeccccccccceee
Q 018344           86 EYININNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYI----N-GVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRL  156 (357)
Q Consensus        86 ~~L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~----~-~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L  156 (357)
                      ++|++++|.. +.+.   .....++..|++.++. .+..+..    . ...++.|.++++.+.. ........+|+++++
T Consensus       107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             cccccccccc-ccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            9999999863 3221   2223567788887765 4443321    1 2357888888754431 122234467888988


Q ss_pred             cc-cccCHHHHHHHhccCCccceeeccccccccccccc-cccccEEEcccccccccc
Q 018344          157 DG-LSITDKWLYNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF  211 (357)
Q Consensus       157 ~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L~~~  211 (357)
                      .+ +.++ ......+.++++|+.|+++++ .+..+|.. ..+|++|.+.++.+++++
T Consensus       185 ~~~n~l~-~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          185 SDNNNLE-ELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             TTCTTCC-CCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred             ccCCccc-CCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence            75 4442 222345788899999999755 56666654 677888888888777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.92  E-value=1.4e-09  Score=105.45  Aligned_cols=158  Identities=20%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      .++.|  +++++....+|   ..+++|++|++++|.+.. |. +.+  +|++|+|++|.++.  ++.   .+++|+.|++
T Consensus        81 ~L~~L--~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           81 QITVL--EITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA  147 (571)
T ss_dssp             TCSEE--ECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred             CCCEE--ECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence            45555  45677777888   347899999999998877 54 444  99999999998743  333   6889999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccc-------cceeecccccC
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNL-------THLRLDGLSIT  162 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~L~~~~i~  162 (357)
                      ++|. ++.++. .+++|++|++++|.. .++.  +. ++|+.|+++++.+.....+..  +|       +.|++++|.++
T Consensus       148 s~N~-l~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          148 DNNQ-LTMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             CSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred             CCCc-cCcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence            9986 444444 458999999999973 2333  22 899999999864431011332  57       99999999985


Q ss_pred             HHHHHHHhccCCccceeeccccccccccc
Q 018344          163 DKWLYNQISELPFLEYLALHYCMKLRSIN  191 (357)
Q Consensus       163 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~  191 (357)
                      .  ++..+..+++|+.|++++|.....++
T Consensus       221 ~--lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          221 H--IPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             C--CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             e--cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            3  55556669999999998775444333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.91  E-value=1.1e-09  Score=92.32  Aligned_cols=143  Identities=20%  Similarity=0.150  Sum_probs=104.0

Q ss_pred             CCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .++.++  ++++....+|... ..+++|++|++++|.+.. + ..+.++++|++|+|++|.++.. ....+..+++|++|
T Consensus        29 ~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLD--LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCcEEE--cCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            455554  5666677788765 579999999999998776 3 3568899999999999987421 12335789999999


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      ++++|. ++.+.   +..+++|++|++++|.. .... ....+++|++++++++.+.     +.+++|+.|++..+.+++
T Consensus       106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----CCTTTTHHHHHHHHHCTT
T ss_pred             EcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----cCCCCHHHHHHHHHhCCc
Confidence            999986 44332   34568999999999873 1111 1224689999999886433     457789999888887754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.90  E-value=5.6e-11  Score=99.53  Aligned_cols=144  Identities=19%  Similarity=0.172  Sum_probs=88.0

Q ss_pred             eEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344           14 KELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN   92 (357)
Q Consensus        14 ~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~   92 (357)
                      +...++...+....+|..+..+++|++|++++|.+.. | .+.++++|++|++++|.++  .++.....+++|++|++++
T Consensus        26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISY  102 (198)
T ss_dssp             SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEE
T ss_pred             heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcC
Confidence            3344333334556666677778888888888887766 4 6777888888888888764  2344455567788888887


Q ss_pred             CCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHH-------
Q 018344           93 CPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK-------  164 (357)
Q Consensus        93 c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~-------  164 (357)
                      |. ++.+ .+..+++|++|++++|..                   ...+....+..+++|+.|++++|.+++.       
T Consensus       103 N~-l~~l~~~~~l~~L~~L~l~~N~i-------------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  162 (198)
T 1ds9_A          103 NQ-IASLSGIEKLVNLRVLYMSNNKI-------------------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             EE-CCCHHHHHHHHHSSEEEESEEEC-------------------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred             Cc-CCcCCccccCCCCCEEECCCCcC-------------------CchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence            64 3322 122335566666665540                   0001001355677788888888776432       


Q ss_pred             --HHHHHhccCCccceee
Q 018344          165 --WLYNQISELPFLEYLA  180 (357)
Q Consensus       165 --~~~~l~~~~~~L~~L~  180 (357)
                        .....+..+|+|+.|+
T Consensus       163 ~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          163 SEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHHCSSCSEEC
T ss_pred             HHHHHHHHHhCCCcEEEC
Confidence              1223467778888776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.89  E-value=8.7e-10  Score=87.65  Aligned_cols=126  Identities=29%  Similarity=0.343  Sum_probs=85.1

Q ss_pred             CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI  134 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l  134 (357)
                      ..++|++|++++|.+++..++..+..+++|++|++++|. ++.+ .+..+++|++|++++|. ...              
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~--------------   78 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSG--------------   78 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCS--------------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccc--------------
Confidence            457889999998877533455556778888888888875 3332 34455778888887776 100              


Q ss_pred             eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc-------ccccccEEEcc
Q 018344          135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFE  203 (357)
Q Consensus       135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-------~~~~L~~L~l~  203 (357)
                         ..|  ..+.++++|++|++++|.+++-..+..+..+++|+.|++++|. +..++.       ..++|+.|+++
T Consensus        79 ---~~~--~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           79 ---GLE--VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ---CTH--HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ---hHH--HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence               012  2345678899999999998764444678899999999997764 444332       14667776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.89  E-value=1.3e-09  Score=99.94  Aligned_cols=162  Identities=19%  Similarity=0.227  Sum_probs=97.2

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCcc-CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .++.++.....+|..+.  ..++.|+|++|.+..  +..+. ++++|++|+|++|.++.-. +..+..+++|++|+|++|
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCC
Confidence            35566666777887654  358888888887765  33455 7888888888888764221 223567888888888887


Q ss_pred             CCCCcc---CcCCCCCccEEEecccCCC-c-ceeEeecceeeEEEEeecCCCc-eee-c---cccccccceeecccccCH
Q 018344           94 PGLKSL---QLLGLNKLKEIKLDSNRCG-L-ERVYINGVNVHSVDIKVYLEPC-EVN-V---SSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        94 ~~l~~l---~l~~~~~L~~L~l~~c~~~-l-~~~~~~~p~L~~L~l~~~~~~~-~~~-~---~~~~~L~~L~L~~~~i~~  163 (357)
                      . ++.+   .+.++++|+.|++++|... . ......+++|++|+++++.+.. ... +   ..+++|+.|+|++|.++.
T Consensus        99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            6 4433   2345678888888887621 1 0111235677777776643321 011 2   346677777777777643


Q ss_pred             HHHHHHhccCCc--cceeeccc
Q 018344          164 KWLYNQISELPF--LEYLALHY  183 (357)
Q Consensus       164 ~~~~~l~~~~~~--L~~L~l~~  183 (357)
                      - ....+..++.  ++.|++++
T Consensus       178 l-~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          178 L-PLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             C-CHHHHHHSCHHHHTTEECCS
T ss_pred             c-CHHHhhhccHhhcceEEecC
Confidence            1 1223445555  36666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.88  E-value=3.6e-09  Score=90.03  Aligned_cols=127  Identities=16%  Similarity=0.212  Sum_probs=93.1

Q ss_pred             CCeEEEEEecCCcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      .+++|+  ++++....+|. .+..+++|++|+|++|.+..  |..+.++++|++|+|++|.++.- ....+..+++|++|
T Consensus        33 ~l~~L~--l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           33 TITEIR--LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL  109 (220)
T ss_dssp             TCCEEE--CCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCEEE--CCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence            455554  56777778886 45669999999999998765  66889999999999999987421 12345679999999


Q ss_pred             eeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      +|++|. ++.+   .+.++++|+.|++++|..  .                 .++ ...+..+++|+.|++++|.+.
T Consensus       110 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          110 LLNANK-INCLRVDAFQDLHNLNLLSLYDNKL--Q-----------------TIA-KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC--S-----------------CCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCC-CCEeCHHHcCCCCCCCEEECCCCcC--C-----------------EEC-HHHHhCCCCCCEEEeCCCCcC
Confidence            999986 3333   344568899999988861  0                 111 023566788999999988763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.84  E-value=1.1e-09  Score=88.87  Aligned_cols=128  Identities=28%  Similarity=0.314  Sum_probs=88.6

Q ss_pred             CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEE
Q 018344           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDI  134 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l  134 (357)
                      ..++|++|++++|.+++..++..+..+++|++|++++|. ++.+ .+..+++|++|++++|. ...              
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~--------------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFG--------------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCS--------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-Cch--------------
Confidence            457899999999877533455556778889999998886 3333 34455778888887776 100              


Q ss_pred             eecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc-------ccccccEEEcccc
Q 018344          135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFERC  205 (357)
Q Consensus       135 ~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-------~~~~L~~L~l~~c  205 (357)
                         ..+  ..+..+++|+.|++++|.+++-.....+..+++|+.|++++|. +..++.       ..++|+.|++++|
T Consensus        86 ---~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           86 ---GLD--MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ---CCC--HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             ---HHH--HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence               012  2344588899999999998653222567889999999997664 433332       2578899988888

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=3e-11  Score=117.32  Aligned_cols=172  Identities=13%  Similarity=0.088  Sum_probs=85.7

Q ss_pred             ccCCCccEEEeeccccCC-CCCccCCCCCceEEeecccc------------CHHHHHHHHcCCCCccEEe-eecCCC--C
Q 018344           33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV------------DDEVIRDMVAGCPLIEYIN-INNCPG--L   96 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~------------~~~~l~~l~~~~~~L~~L~-L~~c~~--l   96 (357)
                      ..+++|+.|+|+++.+.. |..++++++|+.|+++++..            .....+..++.+++|+.|+ ++.+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            345666677777666544 55666666666666655420            0111223334445555554 222110  0


Q ss_pred             CccC-----cCC--CCCccEEEecccCC-CcceeEeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHH
Q 018344           97 KSLQ-----LLG--LNKLKEIKLDSNRC-GLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        97 ~~l~-----l~~--~~~L~~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      ..+.     +..  ...|+.|++++|.. .++. ...+++|+.|+++++.+. .+..++++++|+.|++++|.+++  ++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            0000     000  02455555555542 1222 122455666666553221 11356667777777777777654  33


Q ss_pred             HHhccCCccceeecccccccccc--ccc---cccccEEEccccccccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSI--NIS---SPRLKELVFERCEELVE  210 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l--~~~---~~~L~~L~l~~c~~L~~  210 (357)
                       .++++++|+.|++++| .+..+  |..   .++|+.|+++++ .++.
T Consensus       503 -~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~  547 (567)
T 1dce_A          503 -GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQ  547 (567)
T ss_dssp             -GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGG
T ss_pred             -ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCC
Confidence             4667777777777544 33333  222   456777777766 4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.81  E-value=1.2e-08  Score=86.82  Aligned_cols=127  Identities=13%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             CCeEEEEEecCCcceecCc-c-cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           12 NVKELKLDVGCCRIYNLPQ-I-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~-~-i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      .+++  |+++++....++. . +..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.. .+..+..+++|++
T Consensus        33 ~~~~--L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAE--LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT  109 (220)
T ss_dssp             TCSE--EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred             CCCE--EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence            3454  4567777777743 3 5679999999999998766  44789999999999999987422 1334678999999


Q ss_pred             EeeecCCCCCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      |+|++|.. +.+   .+.++++|+.|++++|..  ..                ..+  ..+..+++|+.|++++|.++
T Consensus       110 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l--~~----------------~~~--~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          110 LMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQI--TT----------------VAP--GAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EECTTSCC-CCBCTTSSTTCTTCSEEECTTSCC--CC----------------BCT--TTTTTCTTCCEEECCSCCEE
T ss_pred             EECCCCcC-CeECHhHcCCCccCCEEECCCCcC--CE----------------ECH--HHhcCCCCCCEEEecCcCCc
Confidence            99999873 332   345668899999998861  00                111  35667888999999998875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.80  E-value=8.1e-09  Score=85.81  Aligned_cols=122  Identities=20%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CC--CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .++++++....+|..+..  +|++|+++++.+.. +.  .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|
T Consensus        12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC
Confidence            456777788889987755  89999999998766 33  378999999999999987432 1334667899999999987


Q ss_pred             CCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           94 PGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        94 ~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      . ++.+.   +.++++|++|++++|.. . .                ..+  ..+..+++|+.|++++|.++
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l-~-~----------------~~~--~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 K-IKEISNKMFLGLHQLKTLNLYDNQI-S-C----------------VMP--GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSCC-C-E----------------ECT--TSSTTCTTCCEEECTTCCBC
T ss_pred             c-CCccCHHHhcCCCCCCEEECCCCcC-C-e----------------eCH--HHhhcCCCCCEEEeCCCCcc
Confidence            6 33332   44567888888887761 0 0                011  24566778889999888775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.79  E-value=1.1e-08  Score=87.56  Aligned_cols=128  Identities=20%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             CCCeEEEEEecCCcceec-CcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~l-P~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..++.|+  ++++....+ |..+..+++|++|+|++|.+.. | ..+.++++|++|+|++|.++.- ....+..+++|++
T Consensus        40 ~~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEE--cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence            3455554  566666677 4556779999999999998866 3 4578999999999999987421 1234568999999


Q ss_pred             EeeecCCCCCcc--CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           88 ININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        88 L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      |++++|. ++.+  .+..+++|+.|++++|..  .                 .++ ...+..+++|+.|++.+|.+.
T Consensus       117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQL--K-----------------SIP-HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EECCSSC-CCSCCTTGGGCTTCSEEECCSSCC--C-----------------CCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred             EeccCCc-ccccCcccccCCCCCEEECCCCcC--C-----------------ccC-HHHHhCCCCCCEEEeeCCCcc
Confidence            9999986 4444  234568899999888761  0                 111 024567788999999998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.77  E-value=6.2e-09  Score=95.41  Aligned_cols=143  Identities=15%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             EEecCCcceecCcccc--cCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           18 LDVGCCRIYNLPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~--~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      |+++++....+|...+  .+++|++|+|++|.+..  +..+.++++|++|+|++|.+..- ....+..+++|++|+|++|
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCC
Confidence            5667888888887765  79999999999998766  45688999999999999987421 1234678999999999998


Q ss_pred             CCCCcc---CcCCCCCccEEEecccCC-CcceeE----eecceeeEEEEeecCCCc--eeecccccc--ccceeeccccc
Q 018344           94 PGLKSL---QLLGLNKLKEIKLDSNRC-GLERVY----INGVNVHSVDIKVYLEPC--EVNVSSCKN--LTHLRLDGLSI  161 (357)
Q Consensus        94 ~~l~~l---~l~~~~~L~~L~l~~c~~-~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~--L~~L~L~~~~i  161 (357)
                      . +..+   .+.++++|++|++++|.. .+....    ...++|+.|+++++.+..  ...+..+++  ++.|++++|.+
T Consensus       123 ~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          123 H-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             c-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            7 3333   355678999999999973 221111    347899999999865431  123445555  48899999887


Q ss_pred             C
Q 018344          162 T  162 (357)
Q Consensus       162 ~  162 (357)
                      .
T Consensus       202 ~  202 (361)
T 2xot_A          202 E  202 (361)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.77  E-value=1.7e-08  Score=83.95  Aligned_cols=122  Identities=15%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .++.+++....+|..+.  ++|++|+++++.+.. |..+.++++|++|+|++|.++.- .+..+.++++|++|+|++|. 
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-   89 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-   89 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-
Confidence            46677777788887664  589999999988766 66788899999999999877421 12335678888888888876 


Q ss_pred             CCcc---CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      ++.+   .+.++++|+.|++++|..  .                 .++ ...+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l--~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDI--S-----------------VVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCC--C-----------------BCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCC--C-----------------eeC-hhhhhcCccccEEEeCCCCee
Confidence            3333   244557788888877751  0                 111 013556677888888877663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=1.1e-08  Score=99.44  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=17.3

Q ss_pred             eccccccccceeecccccCHH--HHHHHhccCCccceee
Q 018344          144 NVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLA  180 (357)
Q Consensus       144 ~~~~~~~L~~L~L~~~~i~~~--~~~~l~~~~~~L~~L~  180 (357)
                      .++++++|+.|++++|.+++.  ....++..+|+|+.|+
T Consensus       528 ~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            344555555666655555331  1122334455555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.71  E-value=3.6e-08  Score=80.60  Aligned_cols=122  Identities=21%  Similarity=0.226  Sum_probs=84.1

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      ++++.+....+|..+.  ++|++|+++++.+.. + ..+.++++|++|++++|.++.- ....+..+++|++|++++|. 
T Consensus        12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-   87 (177)
T 2o6r_A           12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-   87 (177)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-
Confidence            4566677788887654  689999999988766 3 3567899999999999977421 12335678899999998875 


Q ss_pred             CCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH
Q 018344           96 LKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        96 l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      ++.+.   +..+++|++|++++|..  .                 ..+ ...+..+++|++|++++|.++.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l--~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQL--K-----------------SVP-DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCC--S-----------------CCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcc--e-----------------EeC-HHHhcCCcccCEEEecCCCeec
Confidence            33332   34557888888887761  0                 111 0134567788888898887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.68  E-value=3e-08  Score=80.34  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=74.5

Q ss_pred             ceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcC---CCCccEEeeecCCCCCc
Q 018344           25 IYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG---CPLIEYININNCPGLKS   98 (357)
Q Consensus        25 ~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~---~~~L~~L~L~~c~~l~~   98 (357)
                      ...+|.....--.|++|++++|.+..  -..+.++++|++|+|++|. +++..+..+...   +++|++|+|++|..++.
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            45778654444579999999998544  2345789999999999996 699999988763   67899999999998775


Q ss_pred             c---CcCCCCCccEEEecccCCCcc
Q 018344           99 L---QLLGLNKLKEIKLDSNRCGLE  120 (357)
Q Consensus        99 l---~l~~~~~L~~L~l~~c~~~l~  120 (357)
                      -   .+..+++|++|++++|. .++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~-~It  153 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP-GVK  153 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT-TCC
T ss_pred             HHHHHHhcCCCCCEEECCCCC-CCC
Confidence            3   23457899999999998 443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.63  E-value=3.3e-09  Score=97.59  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             CCccEEEeeccccCC--CCCcc-----CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC---c----
Q 018344           36 KSIYVLDFEFCKLEP--PRSTV-----TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---L----  101 (357)
Q Consensus        36 ~~L~~L~Ls~~~~~~--p~~~~-----~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l----  101 (357)
                      ++|+.|+|++|.+..  ...+.     ..++|++|+|++|.+++..+..+...+++|++|+|++|. ++...   +    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence            456677777666543  11111     235677777777766666666555555666777776664 22110   0    


Q ss_pred             -CCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHH---HHHHhccCCccc
Q 018344          102 -LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLE  177 (357)
Q Consensus       102 -~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~  177 (357)
                       ...++|++|++++|...-....                .....+..+++|++|+|++|.+++..   +...+...++|+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~----------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~  214 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVA----------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ  214 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHH----------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHH----------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence             1124566666666651000000                00012234566777777777776533   344456667777


Q ss_pred             eeecccccccc----cccc---ccccccEEEccccccccc
Q 018344          178 YLALHYCMKLR----SINI---SSPRLKELVFERCEELVE  210 (357)
Q Consensus       178 ~L~l~~~~~l~----~l~~---~~~~L~~L~l~~c~~L~~  210 (357)
                      .|++++|.--.    .+..   ..++|++|++++| .+++
T Consensus       215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence            77776553211    1111   1466777777777 4554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.62  E-value=8.9e-09  Score=102.99  Aligned_cols=108  Identities=17%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC--cCCCCCccEEEecccCCC-cceeEeeccee
Q 018344           53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEIKLDSNRCG-LERVYINGVNV  129 (357)
Q Consensus        53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~--l~~~~~L~~L~l~~c~~~-l~~~~~~~p~L  129 (357)
                      .+..+++|++|+|++|.+.  .++.-+..+++|++|+|++|. ++.++  +.++++|+.|++++|.+. ++.....+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            4555666666666666542  122223355666666666654 22221  334456666666666521 11111234566


Q ss_pred             eEEEEeecCCC-ceeeccccccccceeecccccCH
Q 018344          130 HSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus       130 ~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      ++|+++++.+. ....++++++|+.|+|++|.+++
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            66666653221 11457888899999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.56  E-value=5.2e-08  Score=79.63  Aligned_cols=125  Identities=13%  Similarity=0.073  Sum_probs=88.6

Q ss_pred             EEEecCCcceecCcccccCC-CccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~-~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .++++++....+|. +..+. +|++|++++|.+.....+..+++|++|++++|.++.- .+.++..+++|++|++++|..
T Consensus        23 ~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           23 ELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             EEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCC
T ss_pred             EEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCcC
Confidence            34566776777765 55554 9999999999876644788999999999999988532 123457899999999999863


Q ss_pred             CCccC----cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCH
Q 018344           96 LKSLQ----LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        96 l~~l~----l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                       +.++    +..+++|+.|++++|.. .                  ..+.  ...+..+++|+.|+++++...+
T Consensus       101 -~~~~~~~~l~~l~~L~~L~l~~N~i-~------------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          101 -VELGDLDPLASLKSLTYLCILRNPV-T------------------NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             -CCGGGGGGGGGCTTCCEEECCSSGG-G------------------GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             -CcchhhHhhhcCCCCCEEEecCCCC-C------------------CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence             4332    34567888888888761 0                  1110  0135678889999998887744

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.54  E-value=1.6e-07  Score=77.99  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=78.9

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEE
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L   88 (357)
                      ..+++|+  ++++....+|..+.++++|++|+|++|.+..  +..+.++++|++|+|++|.++... +..+..+++|++|
T Consensus        31 ~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence            3455554  5677778999888899999999999998876  456899999999999999874321 2346688999999


Q ss_pred             eeecCCCCCccC---cCCCCCccEEEecccC
Q 018344           89 NINNCPGLKSLQ---LLGLNKLKEIKLDSNR  116 (357)
Q Consensus        89 ~L~~c~~l~~l~---l~~~~~L~~L~l~~c~  116 (357)
                      +|++|. ++.+.   +..+++|+.|++++|.
T Consensus       108 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          108 SLHGND-ISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence            999986 44433   3456788888888776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.54  E-value=1.3e-07  Score=76.81  Aligned_cols=96  Identities=19%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++++++....+|..+.  ++|++|+|++|.+..  |..+.++++|++|+|++|.++.- .+..+..+++|++|+|++|.
T Consensus        13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc
Confidence            46678888889998774  789999999998876  55688999999999999987421 12345688999999999986


Q ss_pred             CCCccC---cCCCCCccEEEecccC
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNR  116 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~  116 (357)
                       ++.+.   +..+++|++|++++|.
T Consensus        90 -l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           90 -LKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -cCEeCHHHhcCCCCCCEEEeCCCC
Confidence             44432   4456788888888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.50  E-value=2.6e-07  Score=75.32  Aligned_cols=96  Identities=17%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++++++....+|..+.  ++|++|+|++|.+..  |..+.++++|++|+|++|.++.- ....+..+++|++|+|++|.
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence            45677777889998775  789999999998876  45788999999999999987431 12235678999999999876


Q ss_pred             CCCccC---cCCCCCccEEEecccC
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNR  116 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~  116 (357)
                       ++.+.   +..+++|+.|++++|.
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             -cceeCHHHhccccCCCEEEeCCCC
Confidence             44432   4456788888888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.48  E-value=4.2e-07  Score=83.03  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=17.6

Q ss_pred             cccccceeecccccCHHHHHHHh---ccCCccceeecccc
Q 018344          148 CKNLTHLRLDGLSITDKWLYNQI---SELPFLEYLALHYC  184 (357)
Q Consensus       148 ~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~l~~~  184 (357)
                      +++|++|+|+.|.+++.....+.   .++++|+.|+++.|
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            44555555555555543322222   23455555555433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.45  E-value=2.2e-07  Score=77.00  Aligned_cols=101  Identities=17%  Similarity=0.171  Sum_probs=77.3

Q ss_pred             CCeEEEEEecCCcceecCcc--cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           12 NVKELKLDVGCCRIYNLPQI--VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~--i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      .++++  +++++....+|..  +..+++|++|+|++|.+..  |..+.++++|++|+|++|.++... +..+..+++|++
T Consensus        30 ~l~~L--~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTEL--LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEE--ECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCEE--ECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCE
Confidence            45555  4677777788864  6789999999999998876  567899999999999999874321 223567899999


Q ss_pred             EeeecCCCCCcc---CcCCCCCccEEEecccC
Q 018344           88 ININNCPGLKSL---QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~  116 (357)
                      |++++|.. +.+   .+..+++|++|++++|.
T Consensus       107 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          107 LNLYDNQI-SCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSSCC-CEECTTSSTTCTTCCEEECTTCC
T ss_pred             EECCCCcC-CeeCHHHhhcCCCCCEEEeCCCC
Confidence            99999863 322   34456789999998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.36  E-value=7.3e-07  Score=72.71  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             CCCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..+++++  ++++....+|... ..+++|++|++++|.+.. | ..+.++++|++|++++|.++.. .+..+..+++|++
T Consensus        28 ~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEE--eCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence            3556555  5666677888765 568999999999998876 3 3568999999999999987421 1234567899999


Q ss_pred             EeeecCCCCCccC---cCCCCCccEEEecccC
Q 018344           88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNR  116 (357)
Q Consensus        88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~  116 (357)
                      |++++|. ++.+.   +..+++|++|++++|.
T Consensus       105 L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          105 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            9999985 44433   2345788899888876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.36  E-value=1.6e-07  Score=93.87  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=41.6

Q ss_pred             ecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc
Q 018344           20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (357)
Q Consensus        20 ~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~   98 (357)
                      ++++....+|..++++++|++|+|++|.+.. |..+.++++|++|+|++|.++  .++..++++++|++|+|++|. ++.
T Consensus       231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~  307 (727)
T 4b8c_D          231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTT  307 (727)
T ss_dssp             CTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCC
T ss_pred             CCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCc
Confidence            3444444445444445555555555544433 334444555555555555443  123233444455555554443 222


Q ss_pred             c--CcCCCCCccEEEecccC
Q 018344           99 L--QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        99 l--~l~~~~~L~~L~l~~c~  116 (357)
                      +  .+..+++|+.|++++|.
T Consensus       308 lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSC
T ss_pred             cChhhhcCCCccEEeCCCCc
Confidence            2  12333445555554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=1.8e-07  Score=75.72  Aligned_cols=42  Identities=12%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc
Q 018344           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~   98 (357)
                      .-..|++|++++|.+++..+..+ .+|++|++|+|++|..++.
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred             CCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence            33578899999988887777664 6788888888888876554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.27  E-value=7.4e-08  Score=80.30  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=66.5

Q ss_pred             CccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCc--CCCCCccEEEecccCCCcceeEeecceee
Q 018344           53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL--LGLNKLKEIKLDSNRCGLERVYINGVNVH  130 (357)
Q Consensus        53 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l--~~~~~L~~L~l~~c~~~l~~~~~~~p~L~  130 (357)
                      .+..+++|++|++++|.++.  ++ .+..+++|++|++++|. ++.++-  ..+++|++|++++|.              
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~--------------  104 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ--------------  104 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE--------------
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc--------------
Confidence            56678888888888887633  23 34566777788777764 222211  112455555555543              


Q ss_pred             EEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          131 SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       131 ~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                              +.....+..+++|+.|++++|.+++-.....+..+++|+.|++++|.
T Consensus       105 --------l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          105 --------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             --------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             --------CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence                    11001456678889999998888653222467788888988887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.27  E-value=4.3e-07  Score=83.44  Aligned_cols=151  Identities=21%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             CCCCceEEeeccccCHHHHHHH---Hc-CCCCccEEeeecCCCCCccCc----CCCCCccEEEecccCCCcceeEeecce
Q 018344           57 LFSLRKLCLSFVHVDDEVIRDM---VA-GCPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNRCGLERVYINGVN  128 (357)
Q Consensus        57 l~~L~~L~L~~~~~~~~~l~~l---~~-~~~~L~~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~~~l~~~~~~~p~  128 (357)
                      .+.|++|+|++|.++......+   +. .+++|++|+|++|. +....+    ..+++|++|++++|...-....     
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-----  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-----  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-----
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-----
Confidence            5678888888888765544333   33 23678888888875 222111    1124677777776651000000     


Q ss_pred             eeEEEEeecCCCceeec-cccccccceeecccccCHHH---HHHHhccCCccceeecccccccccc-----c---ccccc
Q 018344          129 VHSVDIKVYLEPCEVNV-SSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLRSI-----N---ISSPR  196 (357)
Q Consensus       129 L~~L~l~~~~~~~~~~~-~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~~L~l~~~~~l~~l-----~---~~~~~  196 (357)
                                 .....+ ...++|++|+|++|.+++..   +...+..+++|+.|++++|. +...     .   ...++
T Consensus       145 -----------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~  212 (372)
T 3un9_A          145 -----------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQ  212 (372)
T ss_dssp             -----------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSC
T ss_pred             -----------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCC
Confidence                       000011 23567999999999997633   44556789999999998765 3221     1   12468


Q ss_pred             ccEEEccccccccccc---c-----cCCCcceEEeeee
Q 018344          197 LKELVFERCEELVEFE---L-----DTPNLSIFKCFNY  226 (357)
Q Consensus       197 L~~L~l~~c~~L~~~~---i-----~~~~L~~~~~~~~  226 (357)
                      |++|++++| .+++..   +     ..++|+.+...+.
T Consensus       213 L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          213 LQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             cCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            999999999 676532   1     2356666655443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.25  E-value=1.1e-06  Score=80.14  Aligned_cols=152  Identities=14%  Similarity=0.074  Sum_probs=95.1

Q ss_pred             CCCCCceEEeeccccC--------HHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEecccCCCcc---eeE-
Q 018344           56 TLFSLRKLCLSFVHVD--------DEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLE---RVY-  123 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~--------~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~---~~~-  123 (357)
                      .+++|+.|.+..+...        ...+..++..+|+|+.|++++|..+....+. +++|++|++..|.....   .+. 
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            4667777766543211        1135567788999999999987433322232 58999999987762111   111 


Q ss_pred             eecceeeEEEEeec------C--C-Cc--eeeccccccccceeecccccCHHHHHHHh--ccCCccceeeccccccccc-
Q 018344          124 INGVNVHSVDIKVY------L--E-PC--EVNVSSCKNLTHLRLDGLSITDKWLYNQI--SELPFLEYLALHYCMKLRS-  189 (357)
Q Consensus       124 ~~~p~L~~L~l~~~------~--~-~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~--~~~~~L~~L~l~~~~~l~~-  189 (357)
                      ..+|+|++|.+...      .  . ..  ......+++|+.|++.++.+.+.....+.  ..+|+|+.|+++.+ .+.. 
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~  294 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDE  294 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChH
Confidence            25799999988521      1  1 00  01113578999999999998765444333  35789999999654 3432 


Q ss_pred             ----ccc---ccccccEEEccccccccc
Q 018344          190 ----INI---SSPRLKELVFERCEELVE  210 (357)
Q Consensus       190 ----l~~---~~~~L~~L~l~~c~~L~~  210 (357)
                          +..   ..++|+.|++++| .+++
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             HHHHHHhhcccCCcceEEECCCC-cCCH
Confidence                221   1478999999888 4654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=1.8e-06  Score=77.87  Aligned_cols=142  Identities=12%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec-----------------CCC
Q 018344           35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN-----------------CPG   95 (357)
Q Consensus        35 ~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~-----------------c~~   95 (357)
                      |++|+.++|.+ .+..  +..|.+|++|+.++++.+.+..- -+..+..|.++..+....                 |..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            79999999988 4433  45788999999999988854100 011223344444443222                 111


Q ss_pred             CC--------------------------ccCcC-------------CCCCccEEEecccCCCccee----EeecceeeEE
Q 018344           96 LK--------------------------SLQLL-------------GLNKLKEIKLDSNRCGLERV----YINGVNVHSV  132 (357)
Q Consensus        96 l~--------------------------~l~l~-------------~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L  132 (357)
                      ++                          .+.+.             .+++|+++++.+|.  +..+    ...+++|+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEE
Confidence            11                          00000             15788888888764  2222    2246788888


Q ss_pred             EEeecCCC-ceeecccccccc-ceeecccccCHHHHHHHhccCCccceeecc
Q 018344          133 DIKVYLEP-CEVNVSSCKNLT-HLRLDGLSITDKWLYNQISELPFLEYLALH  182 (357)
Q Consensus       133 ~l~~~~~~-~~~~~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~  182 (357)
                      .+.+.... ....|.+|++|+ .+.+.. .++. .-...+.+|++|+.+++.
T Consensus       256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEEC
T ss_pred             ECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeC
Confidence            88764211 123577888998 999876 3311 113457889999999884

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.11  E-value=2.7e-06  Score=77.14  Aligned_cols=96  Identities=21%  Similarity=0.110  Sum_probs=73.7

Q ss_pred             EEecCC-cceecCcccccCCCccEEEeec-cccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           18 LDVGCC-RIYNLPQIVFYLKSIYVLDFEF-CKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        18 l~~~~~-~~~~lP~~i~~~~~L~~L~Ls~-~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      ++.++. ....+|. +..+++|+.|+|++ |.+.. + ..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence            466766 7889999 88899999999996 88766 4 4688999999999999987432 2345678999999999997


Q ss_pred             CCCCccCcC--CCCCccEEEecccC
Q 018344           94 PGLKSLQLL--GLNKLKEIKLDSNR  116 (357)
Q Consensus        94 ~~l~~l~l~--~~~~L~~L~l~~c~  116 (357)
                      . +..+...  ....|+.|++.+|.
T Consensus        91 ~-l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 A-LESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             c-cceeCHHHcccCCceEEEeeCCC
Confidence            6 4444321  11348899988776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=1.9e-06  Score=77.63  Aligned_cols=54  Identities=20%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             cccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc----ccccc-EEEccc
Q 018344          148 CKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS----SPRLK-ELVFER  204 (357)
Q Consensus       148 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~-~L~l~~  204 (357)
                      |++|+.+++.++.++. .....+.+|++|+.+++..+  +..++..    +.+|+ .+.+.+
T Consensus       225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence            6677777777765532 11234677777888777542  4444322    45566 666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.99  E-value=6.8e-06  Score=66.51  Aligned_cols=81  Identities=20%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             CCCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..++.  |+++++....+| ..+.++++|++|+|++|.+.. | ..+.++++|++|+|++|.++.- .+..+..+++|++
T Consensus        30 ~~l~~--L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSE--EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcE--EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            34555  456777788885 456679999999999998877 4 3568999999999999987421 1234678999999


Q ss_pred             EeeecCC
Q 018344           88 ININNCP   94 (357)
Q Consensus        88 L~L~~c~   94 (357)
                      |+|++|+
T Consensus       107 L~L~~N~  113 (170)
T 3g39_A          107 IWLLNNP  113 (170)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            9999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.98  E-value=5.5e-06  Score=67.36  Aligned_cols=81  Identities=22%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             CCCeEEEEEecCCcceecC-cccccCCCccEEEeeccccCC-CC-CccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP-~~i~~~~~L~~L~Ls~~~~~~-p~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..++.|  +++++....+| ..+.++++|++|+|++|.+.. |. .+.++++|++|+|++|.++.- .+..+..+++|++
T Consensus        33 ~~L~~L--~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRL--WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEE--ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEE--EeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence            345554  56777777885 456679999999999998877 43 468999999999999987421 1234677999999


Q ss_pred             EeeecCC
Q 018344           88 ININNCP   94 (357)
Q Consensus        88 L~L~~c~   94 (357)
                      |+|++|+
T Consensus       110 L~L~~N~  116 (174)
T 2r9u_A          110 IYLYNNP  116 (174)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            9999986

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.80  E-value=1.7e-05  Score=65.19  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=21.8

Q ss_pred             ccccccceee--cccccCHHH---HHHHhccCCccceeecccc
Q 018344          147 SCKNLTHLRL--DGLSITDKW---LYNQISELPFLEYLALHYC  184 (357)
Q Consensus       147 ~~~~L~~L~L--~~~~i~~~~---~~~l~~~~~~L~~L~l~~~  184 (357)
                      ..++|++|++  ++|.++++.   +...+...+.|+.|++++|
T Consensus       119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3455666777  566666533   3344555566666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.61  E-value=7.3e-05  Score=69.20  Aligned_cols=172  Identities=14%  Similarity=0.176  Sum_probs=86.6

Q ss_pred             ceecCcccccCCCccEEEeecc-ccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---C
Q 018344           25 IYNLPQIVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---Q  100 (357)
Q Consensus        25 ~~~lP~~i~~~~~L~~L~Ls~~-~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~  100 (357)
                      ...++...+.-.+|+.+.+... ....+..|.+|++|+.++|..+.+..  ++.-...+.+|+.+.+...  ++.+   .
T Consensus       146 i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~--l~~I~~~a  221 (401)
T 4fdw_A          146 LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT--LKEIGSQA  221 (401)
T ss_dssp             CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT--CCEECTTT
T ss_pred             ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc--hheehhhH
Confidence            3344444333335666666541 11113456677777777776654411  1111112566777777532  3333   3


Q ss_pred             cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCc-eeeccccccccceeecccccCH----HHHHHHhccCCc
Q 018344          101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC-EVNVSSCKNLTHLRLDGLSITD----KWLYNQISELPF  175 (357)
Q Consensus       101 l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L~L~~~~i~~----~~~~~l~~~~~~  175 (357)
                      ..+|++|+.+++..+-..+..-.+...+|+.+.+....... ...|.+|++|+.+.+.++.+..    ......+.+|++
T Consensus       222 F~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          222 FLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             TTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             hhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence            34556777777754320111111112467777775422110 1356788888888887665420    112345677888


Q ss_pred             cceeeccccccccccccc----cccccEEEc
Q 018344          176 LEYLALHYCMKLRSINIS----SPRLKELVF  202 (357)
Q Consensus       176 L~~L~l~~~~~l~~l~~~----~~~L~~L~l  202 (357)
                      |+.+++..  .+..+...    +.+|+.+.+
T Consensus       302 L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          302 LARFEIPE--SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             CCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred             CCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence            88888752  23333321    345555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.31  E-value=0.00012  Score=66.06  Aligned_cols=76  Identities=18%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             EEecC-CcceecCc-ccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           18 LDVGC-CRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        18 l~~~~-~~~~~lP~-~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      |++++ +....+|+ .+.++++|++|+|++|.+..  |..+.++++|++|+|++|.++.- .+..+..++ |+.|+|.+|
T Consensus        36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCEEECCSS
T ss_pred             EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceEEEeeCC
Confidence            45664 77888885 46679999999999998876  45779999999999999987421 122233444 999999987


Q ss_pred             CC
Q 018344           94 PG   95 (357)
Q Consensus        94 ~~   95 (357)
                      ..
T Consensus       114 ~~  115 (347)
T 2ifg_A          114 PL  115 (347)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.31  E-value=0.00028  Score=65.29  Aligned_cols=149  Identities=12%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             cceecCcccc-cCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-
Q 018344           24 RIYNLPQIVF-YLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-  100 (357)
Q Consensus        24 ~~~~lP~~i~-~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-  100 (357)
                      ....++...+ +|.+|+.++++.+.+.. +.....+.+|+.+.|..+--...  ...+.+|++|+.+.+..+  ++.+. 
T Consensus       167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~--~~aF~~~~~L~~l~l~~~--l~~I~~  242 (401)
T 4fdw_A          167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIG--SQAFLKTSQLKTIEIPEN--VSTIGQ  242 (401)
T ss_dssp             TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEEC--TTTTTTCTTCCCEECCTT--CCEECT
T ss_pred             CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheeh--hhHhhCCCCCCEEecCCC--ccCccc
Confidence            3455665444 59999999999876655 43333468999999986521110  223568999999999763  44432 


Q ss_pred             --cCCCCCccEEEecccCCCccee----EeecceeeEEEEeecCCC-------ceeeccccccccceeecccccCHHHHH
Q 018344          101 --LLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP-------CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus       101 --l~~~~~L~~L~l~~c~~~l~~~----~~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                        ..+ .+|+.+.+...   +..+    ...+++|+.+.+.+....       ....|.+|++|+.+.+..+ ++. .-.
T Consensus       243 ~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~-I~~  316 (401)
T 4fdw_A          243 EAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRI-LGQ  316 (401)
T ss_dssp             TTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCE-ECT
T ss_pred             ccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEE-Ehh
Confidence              334 57888888432   2222    235788999988774321       1235788999999999743 311 112


Q ss_pred             HHhccCCccceeecc
Q 018344          168 NQISELPFLEYLALH  182 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~  182 (357)
                      ..+.+|++|+.+++.
T Consensus       317 ~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTTTCCSCCEEEEC
T ss_pred             hhhcCCCCccEEEEC
Confidence            357889999999984

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=6.1e-05  Score=61.77  Aligned_cols=108  Identities=12%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             ccccCCCccEEEeecc-ccCCC------CCccCCCCCceEEeeccccCHHHHHH---HHcCCCCccEEeeecCCCCCcc-
Q 018344           31 IVFYLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVIRD---MVAGCPLIEYININNCPGLKSL-   99 (357)
Q Consensus        31 ~i~~~~~L~~L~Ls~~-~~~~p------~~~~~l~~L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~~l~~l-   99 (357)
                      .+..+++|++|+|++| .+...      ..+...++|++|+|++|.+.++....   .+...++|++|+|++|.. ..- 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i-~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI-SGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC-CHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC-CHHH
Confidence            3445788999999998 66541      13446789999999999997765443   345678899999999863 221 


Q ss_pred             ------CcCCCCCccEEEe--cccCCCcc------eeEeecceeeEEEEeecCC
Q 018344          100 ------QLLGLNKLKEIKL--DSNRCGLE------RVYINGVNVHSVDIKVYLE  139 (357)
Q Consensus       100 ------~l~~~~~L~~L~l--~~c~~~l~------~~~~~~p~L~~L~l~~~~~  139 (357)
                            .+...++|++|++  ++|..+..      +.....++|++|+++++.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                  1223468999999  66763211      1111346888888877543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.07  E-value=0.0004  Score=60.18  Aligned_cols=105  Identities=21%  Similarity=0.196  Sum_probs=63.0

Q ss_pred             CCCCCce--EEeecccc--CHHHHHHHHcCCCCccEEeeecCCCCCccC-c----CCCCCccEEEecccCCCcceeEeec
Q 018344           56 TLFSLRK--LCLSFVHV--DDEVIRDMVAGCPLIEYININNCPGLKSLQ-L----LGLNKLKEIKLDSNRCGLERVYING  126 (357)
Q Consensus        56 ~l~~L~~--L~L~~~~~--~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-l----~~~~~L~~L~l~~c~~~l~~~~~~~  126 (357)
                      ..+.|+.  ++++.|..  -...++.+..++|+|++|+|++|. +..+. +    ..+++|+.|++++|.. .       
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~-------  209 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNEL-K-------  209 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCC-C-------
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCcc-C-------
Confidence            3444544  44555522  112233334578999999999986 33321 1    2468888888888761 0       


Q ss_pred             ceeeEEEEeecCCCceeeccccccccceeecccccCH------HHHHHHhccCCccceeec
Q 018344          127 VNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD------KWLYNQISELPFLEYLAL  181 (357)
Q Consensus       127 p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~L~~L~l  181 (357)
                       .          ......+.++ +|++|+|++|.+++      ......+..+|+|+.|+=
T Consensus       210 -~----------~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          210 -S----------ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             -S----------GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             -C----------chhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence             0          0000122233 79999999998864      333467888999999973

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.00  E-value=0.00051  Score=59.56  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             cCCCccEEEeeccccCC----CCCccCCCCCceEEeeccccCH-HHHHHHHcCCCCccEEeeecCCCCCccC--------
Q 018344           34 YLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDD-EVIRDMVAGCPLIEYININNCPGLKSLQ--------  100 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~----p~~~~~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~l~--------  100 (357)
                      ++++|+.|+|++|.+..    |..+..+++|++|+|++|.++. ..+.. +..+ +|++|+|.+|+.-....        
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHHH
Confidence            47789999999988765    2344578999999999998843 23332 2233 89999999887433221        


Q ss_pred             -cCCCCCccEEE
Q 018344          101 -LLGLNKLKEIK  111 (357)
Q Consensus       101 -l~~~~~L~~L~  111 (357)
                       +..+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence             23457888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.48  E-value=0.052  Score=49.65  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC-CCCCccCcCCCCCccEEEec
Q 018344           52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLD  113 (357)
Q Consensus        52 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c-~~l~~l~l~~~~~L~~L~l~  113 (357)
                      ..|.++.+|+.+.+........  .....+|++|+.+.+... ..+..-...+|.+|+++++.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeeecccccEEecccccceec--CcccccccccccccCCCcccccCceeecCCCCcCEEEeC
Confidence            3566677777777755422100  122446777777777431 11222233455666666664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.77  E-value=0.082  Score=40.13  Aligned_cols=52  Identities=21%  Similarity=0.096  Sum_probs=39.3

Q ss_pred             EEEecCCcce--ecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeecccc
Q 018344           17 KLDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV   70 (357)
Q Consensus        17 ~l~~~~~~~~--~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~   70 (357)
                      .++.++....  .+|..+.  .+|++|+|++|.+..  +..+..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4566666666  7886543  469999999998766  34677889999999998876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.12  E-value=0.061  Score=44.04  Aligned_cols=34  Identities=12%  Similarity=0.032  Sum_probs=17.2

Q ss_pred             ccccceeecccccCHHHHH---HHhccCCccceeecc
Q 018344          149 KNLTHLRLDGLSITDKWLY---NQISELPFLEYLALH  182 (357)
Q Consensus       149 ~~L~~L~L~~~~i~~~~~~---~l~~~~~~L~~L~l~  182 (357)
                      +.|++|+|++|.|.++...   ..+..-..|+.|+|+
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECC
Confidence            3466666666666553322   233334456666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.94  E-value=0.048  Score=49.87  Aligned_cols=86  Identities=12%  Similarity=0.026  Sum_probs=48.8

Q ss_pred             eecCcccc-cCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC-CCCccCcC
Q 018344           26 YNLPQIVF-YLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLL  102 (357)
Q Consensus        26 ~~lP~~i~-~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~-~l~~l~l~  102 (357)
                      ..++...+ +|.+|+.+++..+- ......+.++..|+.+.+..+....   ......+..|+.+.+.... .+..-...
T Consensus       174 ~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i---~~~~~~~~~l~~i~ip~~~~~i~~~~f~  250 (394)
T 4fs7_A          174 ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYL---GDFALSKTGVKNIIIPDSFTELGKSVFY  250 (394)
T ss_dssp             CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEE---CTTTTTTCCCCEEEECTTCCEECSSTTT
T ss_pred             ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEe---ehhhcccCCCceEEECCCceeccccccc
Confidence            44555444 58899999887642 2224467788888888877653211   1112345678887775421 12222233


Q ss_pred             CCCCccEEEecc
Q 018344          103 GLNKLKEIKLDS  114 (357)
Q Consensus       103 ~~~~L~~L~l~~  114 (357)
                      ++..++.+.+..
T Consensus       251 ~~~~l~~~~~~~  262 (394)
T 4fs7_A          251 GCTDLESISIQN  262 (394)
T ss_dssp             TCSSCCEEEECC
T ss_pred             ccccceeEEcCC
Confidence            456666666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.62  E-value=0.16  Score=46.27  Aligned_cols=148  Identities=11%  Similarity=0.079  Sum_probs=74.0

Q ss_pred             cccccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCcc
Q 018344           30 QIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLK  108 (357)
Q Consensus        30 ~~i~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~  108 (357)
                      ...+.+.+|+.+.+.... ......+.++..|+.+.+..+.....  ......|+.++........ +......++.+|+
T Consensus       224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~  300 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSVI-VPEKTFYGCSSLT  300 (394)
T ss_dssp             TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSSE-ECTTTTTTCTTCC
T ss_pred             hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceee--ccccccccccceeccCcee-ecccccccccccc
Confidence            334456677777775532 11123566677777777765422100  1123455666665554321 2222233445666


Q ss_pred             EEEecccCCCccee-EeecceeeEEEEeecCCC-ceeeccccccccceeecccccCHHHHHHHhccCCccceeecc
Q 018344          109 EIKLDSNRCGLERV-YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH  182 (357)
Q Consensus       109 ~L~l~~c~~~l~~~-~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~  182 (357)
                      .+.+...--.+.+- ...+.+|+++.+...... ..-.|.+|.+|+.+.+..+ ++ ..-...+.+|++|+.+++.
T Consensus       301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             EEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred             ccccccccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence            66554321001110 112456666655432111 0135778888999888654 21 1112347889999999884

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.98  E-value=0.1  Score=42.69  Aligned_cols=82  Identities=12%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             cCCCccEEEeecc-ccCCC------CCccCCCCCceEEeeccccCHHHH---HHHHcCCCCccEEeeecCCCCCcc----
Q 018344           34 YLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVI---RDMVAGCPLIEYININNCPGLKSL----   99 (357)
Q Consensus        34 ~~~~L~~L~Ls~~-~~~~p------~~~~~l~~L~~L~L~~~~~~~~~l---~~l~~~~~~L~~L~L~~c~~l~~l----   99 (357)
                      +-++|++|+|+++ .+...      ..+..=+.|++|+|++|.+.+...   ...+..-..|++|+|++|.. ..-    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I-g~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL-TPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC-CHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC-CHHHHHH
Confidence            3567999999875 44321      123345789999999998866543   34445667899999988763 110    


Q ss_pred             ---CcCCCCCccEEEecccC
Q 018344          100 ---QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus       100 ---~l~~~~~L~~L~l~~c~  116 (357)
                         .+..-..|++|++++|.
T Consensus       118 la~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhhCCceeEEECCCCc
Confidence               01111569999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.37  E-value=0.55  Score=42.70  Aligned_cols=125  Identities=13%  Similarity=0.112  Sum_probs=71.0

Q ss_pred             ccCCCccEEEeecccc-CCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC-CCCCccCcCCCCCccEE
Q 018344           33 FYLKSIYVLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEI  110 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c-~~l~~l~l~~~~~L~~L  110 (357)
                      ..|.+|+.+.+..... .+...+.++++|+.+.+...-....  ...+.+|.+|+.+.+... ..+..-...+|.+|+++
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~--~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELP--ESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             eecccccEEecccccceecCcccccccccccccCCCcccccC--ceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEE
Confidence            4588999999876422 2245778899999999875411100  223567899999999653 11223345577889999


Q ss_pred             EecccCCCcce-eEeecceeeEEEEeecCCCceeeccccccccceeecccc
Q 018344          111 KLDSNRCGLER-VYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus       111 ~l~~c~~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~  160 (357)
                      .+-..--.+.+ ....+++|+.+.+.+..... ..+..+.+|+.+.+..+.
T Consensus       340 ~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          340 AIPSSVTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EECTTCCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC---------
T ss_pred             EECcccCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCCCC
Confidence            88543212222 22357889998887743211 234567778888776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.53  E-value=0.93  Score=40.77  Aligned_cols=77  Identities=13%  Similarity=0.004  Sum_probs=39.2

Q ss_pred             ccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---CcCCCCCcc
Q 018344           33 FYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLK  108 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L~  108 (357)
                      ..+.++....+.... ......+..+.+|+.+.+...-....  .....+|..|+.+.+...  ++.+   ...++.+|+
T Consensus       191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~--~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLG--DGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEEC--TTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCC
T ss_pred             cccccccccccccceeEEeecccccccccceeeeccceeEEc--cccccCCccceEEEcCCC--ccEeCccccceeehhc
Confidence            345556665554422 12233556677777777765421000  112446777888777543  3322   233445666


Q ss_pred             EEEec
Q 018344          109 EIKLD  113 (357)
Q Consensus       109 ~L~l~  113 (357)
                      .+.+.
T Consensus       267 ~i~l~  271 (379)
T 4h09_A          267 TLNFY  271 (379)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            66553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.80  E-value=1.6  Score=39.26  Aligned_cols=122  Identities=12%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             cccCCCccEEEeeccc-cCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc---CcCCCCCc
Q 018344           32 VFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKL  107 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~-~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~l~~~~~L  107 (357)
                      ...+.+|+.+.+.... ......+.++..|+.+.+..+--...  .....+|.+|+.+.+...  ++.+   ...+|.+|
T Consensus       213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~--~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIG--SFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEEC--TTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred             cccccccceeeeccceeEEccccccCCccceEEEcCCCccEeC--ccccceeehhcccccccc--ceecccccccccccc
Confidence            3457788888886532 22234677889999999876521100  123457888999888542  3332   34456778


Q ss_pred             cEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeeccc--ccCHHHHHHHhccCCccceeec
Q 018344          108 KEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGL--SITDKWLYNQISELPFLEYLAL  181 (357)
Q Consensus       108 ~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~L~~L~l  181 (357)
                      +.+.+..+.  +..+.                  .-.|.+|.+|+.+.+..+  .+.+.    .+.+|++|+.+.+
T Consensus       289 ~~i~l~~~~--i~~I~------------------~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~i  340 (379)
T 4h09_A          289 TKVVMDNSA--IETLE------------------PRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISY  340 (379)
T ss_dssp             CEEEECCTT--CCEEC------------------TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCC
T ss_pred             ccccccccc--cceeh------------------hhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEE
Confidence            877775442  11110                  124556666777776432  23222    3566777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.32
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.16
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.11
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.05
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.43
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-14  Score=124.46  Aligned_cols=173  Identities=15%  Similarity=0.257  Sum_probs=107.7

Q ss_pred             ccEEEeeccccCCC-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc---cCcCCCCCccEEEec
Q 018344           38 IYVLDFEFCKLEPP-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLD  113 (357)
Q Consensus        38 L~~L~Ls~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~---l~l~~~~~L~~L~l~  113 (357)
                      ...+.++......| .......+|++|+++++.++.+.+..++.+|++|++|++++|. +..   -.+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCcccc
Confidence            44555554433332 2333455677777777666666666666777777777777664 221   112334667777777


Q ss_pred             ccCCCcce-----eEeecceeeEEEEeec-CCC---ceeec-cccccccceeeccc--ccCHHHHHHHhccCCccceeec
Q 018344          114 SNRCGLER-----VYINGVNVHSVDIKVY-LEP---CEVNV-SSCKNLTHLRLDGL--SITDKWLYNQISELPFLEYLAL  181 (357)
Q Consensus       114 ~c~~~l~~-----~~~~~p~L~~L~l~~~-~~~---~~~~~-~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~L~~L~l  181 (357)
                      +|. .+++     +.-.+|+|++|++++. ...   ....+ ..+++|+.|+++++  .+++..+..+..++|+|+.|++
T Consensus       104 ~c~-~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         104 GCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             TCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             ccc-cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccc
Confidence            665 3332     1223567777777663 221   00112 23578999999864  5777888888889999999999


Q ss_pred             ccccccccc--cc--ccccccEEEccccccccccc
Q 018344          182 HYCMKLRSI--NI--SSPRLKELVFERCEELVEFE  212 (357)
Q Consensus       182 ~~~~~l~~l--~~--~~~~L~~L~l~~c~~L~~~~  212 (357)
                      ++|..+.+-  ..  ..++|++|++++|.++++..
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence            988876432  21  25789999999998887644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-14  Score=124.19  Aligned_cols=194  Identities=17%  Similarity=0.232  Sum_probs=134.6

Q ss_pred             HHHhCCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCCC
Q 018344            7 YAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP   83 (357)
Q Consensus         7 ~~~~~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~   83 (357)
                      ..+.+++..+.+  ............+...+|++|++++|.+..   +..+.++++|++|+|+++.+++..+.. ++.++
T Consensus        19 ~l~~~~~~~lrl--~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~   95 (284)
T d2astb2          19 RLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNS   95 (284)
T ss_dssp             HHHHTTCSEEEC--TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCT
T ss_pred             HHHhccceEeec--cccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCC
Confidence            345566665543  222112222333456689999999987654   234678999999999999888777666 46789


Q ss_pred             CccEEeeecCCCCCccCc----CCCCCccEEEecccCCCccee------EeecceeeEEEEeecC--CC---ceeecccc
Q 018344           84 LIEYININNCPGLKSLQL----LGLNKLKEIKLDSNRCGLERV------YINGVNVHSVDIKVYL--EP---CEVNVSSC  148 (357)
Q Consensus        84 ~L~~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~~~l~~~------~~~~p~L~~L~l~~~~--~~---~~~~~~~~  148 (357)
                      +|++|++++|..++...+    .++++|++|++++|. .+.+.      ...+++|+.|.+.|..  +.   ......+|
T Consensus        96 ~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~  174 (284)
T d2astb2          96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  174 (284)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCcCccccccccccccccchhhHHHHhcccccccccc-ccccccchhhhcccccccchhhhccccccccccccccccccc
Confidence            999999999988764322    356899999999987 44321      1236789999998732  22   11223578


Q ss_pred             ccccceeeccc-ccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccc
Q 018344          149 KNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (357)
Q Consensus       149 ~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c  205 (357)
                      ++|++|+++++ .++++.+. .+.++++|++|++++|..+.+-..    ..++|+.|++.+|
T Consensus       175 ~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99999999886 47765544 457899999999999987743221    1577888888877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.5e-12  Score=109.60  Aligned_cols=170  Identities=18%  Similarity=0.168  Sum_probs=104.5

Q ss_pred             ccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEE
Q 018344           33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIK  111 (357)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~  111 (357)
                      ..+++|+.|++++|.+..-.++.++++|++|++++|.+...  .. +..+++|+++++++|. ++.+ .+.++++|+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--cc-cccccccccccccccc-ccccccccccccccccc
Confidence            34667788888777665533567778888888887766321  11 5667778888777765 3333 244567777777


Q ss_pred             ecccCCCccee-EeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccc
Q 018344          112 LDSNRCGLERV-YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI  190 (357)
Q Consensus       112 l~~c~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l  190 (357)
                      +++|. ..... ....+.++.+.+.+........+.++++|+.|++.++.+++..   .++++++|+.|++++| .+.++
T Consensus       114 l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n-~l~~l  188 (227)
T d1h6ua2         114 LTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDN-KISDI  188 (227)
T ss_dssp             CTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSS-CCCCC
T ss_pred             ccccc-ccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch---hhcccccceecccCCC-ccCCC
Confidence            77665 21111 1224455556555533221124556677888888877764311   2567888888888665 45555


Q ss_pred             ccc--cccccEEEccccccccccc
Q 018344          191 NIS--SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       191 ~~~--~~~L~~L~l~~c~~L~~~~  212 (357)
                      +..  .++|++|++++| +++++.
T Consensus       189 ~~l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             GGGGGCTTCCEEECTTS-CCCBCG
T ss_pred             hhhcCCCCCCEEECcCC-cCCCCc
Confidence            432  577888888887 677654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.3e-12  Score=107.72  Aligned_cols=145  Identities=18%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCccEEEec
Q 018344           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD  113 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~~L~l~  113 (357)
                      .++++++|+++++.+..-.++..+++|++|++++|.+++.  .. ++++++|++|++++|.....-.+.++++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            4677888888888766544677788888888888877432  22 56788888888888764333345566788888887


Q ss_pred             ccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccc
Q 018344          114 SNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (357)
Q Consensus       114 ~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~  184 (357)
                      +|..........+++|+.+.+++..+.....+.++++|+.|++.+|.+++  ++ .++++++|+.|++++|
T Consensus       115 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         115 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSN  182 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccC--Cc-cccCCCCCCEEECCCC
Confidence            77611111111245555555555333211234555666666666666543  11 2455666666666544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=3.5e-12  Score=107.27  Aligned_cols=183  Identities=17%  Similarity=0.183  Sum_probs=133.5

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..++.+.  +.++....++ .+..+++|++|++++|.+.....+.++++|++++++++.++.  ++. +..+++|+.+++
T Consensus        41 ~~L~~L~--l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLS--AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEEC
T ss_pred             CCcCEEE--CCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccccc
Confidence            3455555  4566667775 588899999999999988774468999999999999997732  222 568999999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI  170 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  170 (357)
                      ++|.......+...+.++.+.++.+...........++|+++.+.+........++++++|+.|++++|.+++  ++ .+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~--l~-~l  191 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--IS-PL  191 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC--Ch-hh
Confidence            9887544434445578889998877621111123577899999988544322357789999999999998865  22 26


Q ss_pred             ccCCccceeeccccccccccccc--cccccEEEcc
Q 018344          171 SELPFLEYLALHYCMKLRSINIS--SPRLKELVFE  203 (357)
Q Consensus       171 ~~~~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l~  203 (357)
                      +++++|+.|++++| .+.+++..  .++|+.|+++
T Consensus       192 ~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         192 ASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             cCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            88999999999877 56666532  5667777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=2.8e-12  Score=105.64  Aligned_cols=160  Identities=17%  Similarity=0.166  Sum_probs=118.6

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEee
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L   90 (357)
                      ..+++++  ++++....++ .+..+++|++|++++|.+.....+.++++|++|++++|.+..  ++. +++++.|+.|++
T Consensus        40 ~~l~~L~--l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQ--ADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEE--CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEC
T ss_pred             cCCCEEE--CCCCCCCCcc-ccccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccccccccc
Confidence            4566555  4555566665 477899999999999988774468899999999999997732  122 578999999999


Q ss_pred             ecCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHh
Q 018344           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI  170 (357)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  170 (357)
                      ++|.......+..+++|+.|++++|.....+.....++|+.+.+.++.+.....++++++|++|++++|.+++  ++ .+
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~--i~-~l  190 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--IS-VL  190 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GG
T ss_pred             cccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC--Cc-cc
Confidence            9987655445667799999999998731111123467899999988644322347789999999999999865  22 36


Q ss_pred             ccCCcccee
Q 018344          171 SELPFLEYL  179 (357)
Q Consensus       171 ~~~~~L~~L  179 (357)
                      +++++|+.|
T Consensus       191 ~~L~~L~~L  199 (199)
T d2omxa2         191 AKLTNLESL  199 (199)
T ss_dssp             GGCTTCSEE
T ss_pred             cCCCCCCcC
Confidence            778888775

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=2.4e-12  Score=107.00  Aligned_cols=162  Identities=20%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             cCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCcc-CcCCCCCccEEEe
Q 018344           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKL  112 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l-~l~~~~~L~~L~l  112 (357)
                      .+++|++|++++|.+....++..+++|++|+|++|.+++  ++. ++.+++|++|++++|. ++.+ .+.++++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-cccccccccccccccccc
Confidence            366788888888877664467788899999998887743  222 4678889999988875 4444 3555688888888


Q ss_pred             cccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeecccccccccccc
Q 018344          113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI  192 (357)
Q Consensus       113 ~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~  192 (357)
                      .+|...........++++.+.+.+..+.....+..+++|+.++++++.+++  +. .++++++|+.|++++| .+++++.
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~-~l~~l~~L~~L~Ls~N-~i~~l~~  195 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKN-HISDLRA  195 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSS-CCCBCGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc--cc-cccCCCCCCEEECCCC-CCCCChh
Confidence            877621111112345666666655433211234566777777777777643  22 1567777777777654 3444442


Q ss_pred             c--cccccEEEcc
Q 018344          193 S--SPRLKELVFE  203 (357)
Q Consensus       193 ~--~~~L~~L~l~  203 (357)
                      .  .++|+.|+++
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            2  3455665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=2.7e-12  Score=106.67  Aligned_cols=163  Identities=18%  Similarity=0.159  Sum_probs=120.4

Q ss_pred             CCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeee
Q 018344           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININ   91 (357)
Q Consensus        12 ~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~   91 (357)
                      .++++  +++.+....++ ++..+++|++|++++|.+.....+.++++|++|++++|.++.  ++. +..+++|+.|+++
T Consensus        47 ~L~~L--~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQI--IANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEE--ECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred             CccEE--ECcCCCCCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccccccccc
Confidence            34544  45566556665 477899999999999988773357889999999999998853  232 6779999999999


Q ss_pred             cCCCCCccCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhc
Q 018344           92 NCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS  171 (357)
Q Consensus        92 ~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  171 (357)
                      +|.....-.+..+++++.+.+++|...-......+++|+.+.+++..+.....+.++++|++|++++|.+++  ++ .+.
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~--l~-~l~  197 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-ALA  197 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-GGT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCC--Ch-hhc
Confidence            987533334556688999999888621111223478999999988654322347788999999999999864  33 378


Q ss_pred             cCCccceeeccc
Q 018344          172 ELPFLEYLALHY  183 (357)
Q Consensus       172 ~~~~L~~L~l~~  183 (357)
                      ++++|+.|+|++
T Consensus       198 ~l~~L~~L~Ls~  209 (210)
T d1h6ta2         198 GLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCSEEEEEE
T ss_pred             CCCCCCEEEccC
Confidence            899999999853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-12  Score=112.74  Aligned_cols=182  Identities=16%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             EEEEecCCcceecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        16 l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      +++|.++.....+|+.+.  +++++|+|++|.+..  +..+.++++|++|+|++|.++.  ++. .+.+++|++|++++|
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSS
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-ccccccccccccccc
Confidence            456778878889998764  589999999998766  3568899999999999998742  222 357899999999998


Q ss_pred             CCCCcc--CcCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHHHH
Q 018344           94 PGLKSL--QLLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKWLY  167 (357)
Q Consensus        94 ~~l~~l--~l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~~~  167 (357)
                      .. +..  .+.++++|+.|+++++.. .+. ......++++.+.+.+..+..  ...+..+++++.+++++|.++. ..+
T Consensus        88 ~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~  165 (266)
T d1p9ag_          88 QL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPA  165 (266)
T ss_dssp             CC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCT
T ss_pred             cc-cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc-cCc
Confidence            63 322  234568899999988762 111 111224456666665532210  1223445666666666666543 112


Q ss_pred             HHhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344          168 NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (357)
Q Consensus       168 ~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c  205 (357)
                      ..+..+++|+.|+|+++. +..+|..   .++|+.|.+++.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccccccccceeecccCC-CcccChhHCCCCCCCEEEecCC
Confidence            334556666666665443 4444432   344555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.5e-11  Score=106.59  Aligned_cols=186  Identities=19%  Similarity=0.193  Sum_probs=101.9

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      +|.++....++|..+.  +++++|+|++|.+.. | ..+.++++|++|+++++.+..- .+..+.++++|++|++++|. 
T Consensus        15 ~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-   90 (305)
T d1xkua_          15 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-   90 (305)
T ss_dssp             EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-
Confidence            4555556677777664  468888888877655 3 3567778888888887765311 12335667778888887764 


Q ss_pred             CCccCcCCCCCccEEEecccCC------------------------Ccce----eEeecceeeEEEEeecCCCceeeccc
Q 018344           96 LKSLQLLGLNKLKEIKLDSNRC------------------------GLER----VYINGVNVHSVDIKVYLEPCEVNVSS  147 (357)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~------------------------~l~~----~~~~~p~L~~L~l~~~~~~~~~~~~~  147 (357)
                      ++.++....+.++.|+..++..                        ....    .....++|+.+.+.+..... .....
T Consensus        91 l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~  169 (305)
T d1xkua_          91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL  169 (305)
T ss_dssp             CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC
T ss_pred             cCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc
Confidence            3333322223444444433320                        0000    01123456666665533221 11123


Q ss_pred             cccccceeecccccCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccccccccc
Q 018344          148 CKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEF  211 (357)
Q Consensus       148 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c~~L~~~  211 (357)
                      +++|++|+++++..+.. .+..+.+++.++.|+++++ .+..++.    ..++|++|+++++ +++.+
T Consensus       170 ~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l  234 (305)
T d1xkua_         170 PPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKV  234 (305)
T ss_dssp             CTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred             CCccCEEECCCCcCCCC-ChhHhhccccccccccccc-cccccccccccccccceeeecccc-ccccc
Confidence            45677777777665432 2234566777777777554 3333322    1466777777777 56554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.7e-11  Score=106.36  Aligned_cols=191  Identities=16%  Similarity=0.127  Sum_probs=125.7

Q ss_pred             CCCeEEEEEecCCcceecCcc-cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      +.++.|  +++++...++|+. +.++++|++|++++|.+..  |..+.++++|++|++++|.++.  ++  ....+.++.
T Consensus        31 ~~l~~L--~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~--~~~~~~l~~  104 (305)
T d1xkua_          31 PDTALL--DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQE  104 (305)
T ss_dssp             TTCCEE--ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCE
T ss_pred             CCCCEE--ECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cc--cchhhhhhh
Confidence            456665  4677888899974 6679999999999988766  5578899999999999987631  11  122345666


Q ss_pred             EeeecCCC------------------------CCc----cCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCC
Q 018344           88 ININNCPG------------------------LKS----LQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLE  139 (357)
Q Consensus        88 L~L~~c~~------------------------l~~----l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~  139 (357)
                      |++.++..                        ...    ..+.++++|+.+++.+|.. ..--....++|++|.+.+...
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCC
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcccCCccCEEECCCCcC
Confidence            65554321                        000    0112346788888888762 111112356888888877433


Q ss_pred             Cc--eeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccccccccc
Q 018344          140 PC--EVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF  211 (357)
Q Consensus       140 ~~--~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~  211 (357)
                      ..  ...+.+++.++.|+++++.+++- .+..+.++++|++|++++| .+..++..   .++|+.|+++++ +++.+
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCC
T ss_pred             CCCChhHhhcccccccccccccccccc-ccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCcc
Confidence            21  13466777888888888877542 2345678889999999766 45555532   578888888887 57664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6e-12  Score=108.48  Aligned_cols=169  Identities=16%  Similarity=0.109  Sum_probs=122.9

Q ss_pred             CCCeEEEEEecCCcceecCcc-cccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      +.+++|  |++++....+|.. +.++++|++|+|++|.+.....+..+++|++|+|++|.++..  ...+..+++|+.|+
T Consensus        31 ~~l~~L--~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTIL--HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEE--ECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEE
T ss_pred             cCCCEE--ECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            356655  5678888888865 557999999999999877622467899999999999987432  33467889999999


Q ss_pred             eecCCCCC--ccCcCCCCCccEEEecccCC-Ccc-eeEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCH
Q 018344           90 INNCPGLK--SLQLLGLNKLKEIKLDSNRC-GLE-RVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD  163 (357)
Q Consensus        90 L~~c~~l~--~l~l~~~~~L~~L~l~~c~~-~l~-~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~  163 (357)
                      ++++....  ......+.++++|++++|.. .+. ......++++.+.+++..+..  ...+..+++|++|+|++|.++ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            99886422  22233457899999998862 111 122346789999998854431  134677899999999999985 


Q ss_pred             HHHHHHhccCCccceeeccccc
Q 018344          164 KWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       164 ~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                       .++..+..+++|+.|++++++
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCC
T ss_pred             -ccChhHCCCCCCCEEEecCCC
Confidence             345455678999999998654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=6.4e-11  Score=106.93  Aligned_cols=174  Identities=20%  Similarity=0.159  Sum_probs=99.6

Q ss_pred             CcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCcCCCCCcc
Q 018344           29 PQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLK  108 (357)
Q Consensus        29 P~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l~~~~~L~  108 (357)
                      +.....+++++.++++++.+.........++|++|++++|.+++  ++ .+..+++|+.|++++|..-...++..+++|+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~  266 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLT  266 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--cc-hhhcccccchhccccCccCCCCcccccccCC
Confidence            34455667777777777665552234566777777777776632  12 2456777777777776533323445557777


Q ss_pred             EEEecccCC-CcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccccc
Q 018344          109 EIKLDSNRC-GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL  187 (357)
Q Consensus       109 ~L~l~~c~~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l  187 (357)
                      +|+++++.. .... ....+.++.+...+........+..+++++.|+++++.+++-  . .+..+|+|+.|++++| .+
T Consensus       267 ~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l--~-~l~~l~~L~~L~L~~n-~l  341 (384)
T d2omza2         267 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--S-PVSSLTKLQRLFFANN-KV  341 (384)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC--G-GGGGCTTCCEEECCSS-CC
T ss_pred             EeeccCcccCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCC--c-ccccCCCCCEEECCCC-CC
Confidence            777776652 1111 112445555555543322112345566777777777776542  1 2566777777777655 34


Q ss_pred             cccccc--cccccEEEcccccccccc
Q 018344          188 RSINIS--SPRLKELVFERCEELVEF  211 (357)
Q Consensus       188 ~~l~~~--~~~L~~L~l~~c~~L~~~  211 (357)
                      +.++..  .++|++|+++++ +++++
T Consensus       342 ~~l~~l~~l~~L~~L~l~~N-~l~~l  366 (384)
T d2omza2         342 SDVSSLANLTNINWLSAGHN-QISDL  366 (384)
T ss_dssp             CCCGGGGGCTTCCEEECCSS-CCCBC
T ss_pred             CCChhHcCCCCCCEEECCCC-cCCCC
Confidence            443321  466777777766 55554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.11  E-value=2.8e-11  Score=106.68  Aligned_cols=100  Identities=21%  Similarity=0.262  Sum_probs=75.8

Q ss_pred             EEEEecCC---cceecCcccccCCCccEEEeec-cccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           16 LKLDVGCC---RIYNLPQIVFYLKSIYVLDFEF-CKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        16 l~l~~~~~---~~~~lP~~i~~~~~L~~L~Ls~-~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      ..+|++++   ....+|+.++++++|++|+|++ +.+.+  |..+.++++|++|+|++|.+... .+..+..++.|+.++
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEE
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcccc
Confidence            34555554   3347999999999999999997 56653  77899999999999999987322 133456788999999


Q ss_pred             eecCCCCCcc--CcCCCCCccEEEecccC
Q 018344           90 INNCPGLKSL--QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        90 L~~c~~l~~l--~l~~~~~L~~L~l~~c~  116 (357)
                      +++|.....+  .+.++++++.+++++|.
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccCchhhccCcccceeeccccc
Confidence            9987654332  35567889999998886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-10  Score=101.40  Aligned_cols=192  Identities=18%  Similarity=0.144  Sum_probs=129.4

Q ss_pred             EEEEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeec
Q 018344           15 ELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN   92 (357)
Q Consensus        15 ~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~   92 (357)
                      ++.++.++....++|..+.  +++++|+|++|.+.. | ..+.++++|++|+++++.+.... ......++.++.+....
T Consensus        13 ~~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          13 KVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             SCEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-ccccccccccccccccc
Confidence            3456666667788887764  578999999998866 4 46889999999999999773221 22345678888888877


Q ss_pred             CCCCCcc---CcCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccccCHHH
Q 018344           93 CPGLKSL---QLLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITDKW  165 (357)
Q Consensus        93 c~~l~~l---~l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~i~~~~  165 (357)
                      +..++.+   .+.++++|++|++++|.. .... .....++|+.+.+.+..+..  ...+..+++|++|+++++.++. .
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l  168 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V  168 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-E
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-c
Confidence            6666554   345668899999998872 1111 12235678888887743321  1245677889999999888743 1


Q ss_pred             HHHHhccCCccceeeccccccccccccc---cccccEEEcccccccccc
Q 018344          166 LYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF  211 (357)
Q Consensus       166 ~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c~~L~~~  211 (357)
                      .+..+.++++|+.++++++....-.+..   .++|++|+++++ .++.+
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~  216 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL  216 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhccccccccc-ccccc
Confidence            2345678889999998765433222222   467888888887 45543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=7.8e-10  Score=99.57  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=121.8

Q ss_pred             EecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc
Q 018344           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (357)
Q Consensus        19 ~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~   98 (357)
                      +++.+....+++ ...+.+|+.|++++|.+..+..+..+++|+.|++++|.++.-  .. ++.+++|++|+++++..-..
T Consensus       203 ~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         203 IATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCC
T ss_pred             eccCCccCCCCc-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC--Cc-ccccccCCEeeccCcccCCC
Confidence            344444455543 345778999999999877755778899999999999877431  22 56789999999988764333


Q ss_pred             cCcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccce
Q 018344           99 LQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (357)
Q Consensus        99 l~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  178 (357)
                      ..+.+++.++.+.+..|...-......+++++.+++++..+.....+..+++|++|++++|.+++  ++ .++++++|+.
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~  355 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VS-SLANLTNINW  355 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCE
T ss_pred             CccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCE
Confidence            34556678888888877621111123467888888888554322246788899999999998864  22 3678999999


Q ss_pred             eecccccccccccc-c-cccccEEEccc
Q 018344          179 LALHYCMKLRSINI-S-SPRLKELVFER  204 (357)
Q Consensus       179 L~l~~~~~l~~l~~-~-~~~L~~L~l~~  204 (357)
                      |++++| .+.+++. . .++|+.|++++
T Consensus       356 L~l~~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         356 LSAGHN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             EECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             EECCCC-cCCCChhhccCCCCCEeeCCC
Confidence            999655 4554432 2 46777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-10  Score=91.09  Aligned_cols=128  Identities=17%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             cccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccCc---CCCCCc
Q 018344           32 VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL---LGLNKL  107 (357)
Q Consensus        32 i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~l---~~~~~L  107 (357)
                      +.++.++++|+|++|.+.. +..+..+++|++|+|++|.++.  ++. +..+++|++|++++|. ++.+..   ..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccccc-ccCCCcccccccccc
Confidence            3456678888888887765 4455677888888888887632  111 4567777788877765 343322   234677


Q ss_pred             cEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH--HHHHHHhccCCccceeecc
Q 018344          108 KEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALH  182 (357)
Q Consensus       108 ~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~l~  182 (357)
                      ++|++++|..  .                 .++....+..+++|+++++++|.+++  ..-...+..+|+|+.|+-.
T Consensus        90 ~~L~L~~N~i--~-----------------~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          90 TELILTNNSL--V-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CEEECCSCCC--C-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccceeccccc--c-----------------ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            7777776651  0                 01100235677889999999988754  2224467888999988753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.6e-10  Score=100.30  Aligned_cols=190  Identities=16%  Similarity=0.093  Sum_probs=129.3

Q ss_pred             CCCeEEEEEecCCcceecCcc-cccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCcc
Q 018344           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE   86 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~-i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~   86 (357)
                      ..++.|  +++++....+|+. +.++++|++|+++++.+..  +..+..++.++.+...... +..- -+..++++++|+
T Consensus        32 ~~~~~L--~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRI--FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEE--ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEE--ECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence            345655  5678888899975 5679999999999987655  4466778899988776443 2211 123366889999


Q ss_pred             EEeeecCCCC--CccCcCCCCCccEEEecccCC-Ccce-eEeecceeeEEEEeecCCCc--eeeccccccccceeecccc
Q 018344           87 YININNCPGL--KSLQLLGLNKLKEIKLDSNRC-GLER-VYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        87 ~L~L~~c~~l--~~l~l~~~~~L~~L~l~~c~~-~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~L~~L~L~~~~  160 (357)
                      +|++++|..-  ........++|+.+++.++.. .... ..-..++|++|++++..+..  ...+.++++|+.+++.+|.
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            9999988642  222333457899999998863 1111 12246789999998855431  1356788999999999998


Q ss_pred             cCHHHHHHHhccCCccceeecccccccccccc----ccccccEEEcccc
Q 018344          161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (357)
Q Consensus       161 i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~c  205 (357)
                      +++ ..+..+.++++|+.|+++++. +..++.    ..++|+.|++++.
T Consensus       189 l~~-i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         189 VAH-VHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCE-ECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccc-cChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCC
Confidence            864 235567889999999997654 333332    2466777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.99  E-value=7.5e-11  Score=103.83  Aligned_cols=188  Identities=14%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             CCCeEEEEEecCCcce-ecCcccccCCCccEEEeeccccCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccE
Q 018344           11 SNVKELKLDVGCCRIY-NLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~-~lP~~i~~~~~L~~L~Ls~~~~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~   87 (357)
                      ..++.|++.-. +... .+|+++.++++|++|+|++|.+..  +..+..++.|++++++.|.+... ++..++.++.++.
T Consensus        76 ~~L~~L~Ls~~-N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~  153 (313)
T d1ogqa_          76 PYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEE-TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             ccccccccccc-cccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccce
Confidence            35666666321 3333 799999999999999999998765  45688899999999999876321 2344678999999


Q ss_pred             EeeecCCCCCcc--CcCCCCC-ccEEEecccCCCccee--EeecceeeEEEEeec----CCCceeeccccccccceeecc
Q 018344           88 ININNCPGLKSL--QLLGLNK-LKEIKLDSNRCGLERV--YINGVNVHSVDIKVY----LEPCEVNVSSCKNLTHLRLDG  158 (357)
Q Consensus        88 L~L~~c~~l~~l--~l~~~~~-L~~L~l~~c~~~l~~~--~~~~p~L~~L~l~~~----~~~~~~~~~~~~~L~~L~L~~  158 (357)
                      +++++|..-..+  .+..+.+ ++.++++.|.. ....  .+.......+.+...    ..+  ..+..+++++.+++.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l-~~~~~~~~~~l~~~~l~l~~~~~~~~~~--~~~~~~~~l~~l~~~~  230 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-TGKIPPTFANLNLAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-EEECCGGGGGCCCSEEECCSSEEEECCG--GGCCTTSCCSEEECCS
T ss_pred             eeccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc--cccccccccccccccc
Confidence            999988643222  1222333 35666665541 1110  011112222332221    111  2333445566666655


Q ss_pred             cccCHHHHHHHhccCCccceeeccccccccccccc---cccccEEEcccc
Q 018344          159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (357)
Q Consensus       159 ~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~c  205 (357)
                      +.++..  ...+..+++|+.|+++++.....+|..   .++|++|+++++
T Consensus       231 ~~l~~~--~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         231 NSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccccc--ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            555332  112445566666666544333334332   345666666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=2e-10  Score=86.58  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             ccccccccceeecccccCH--HHHHHHhccCCcccee
Q 018344          145 VSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYL  179 (357)
Q Consensus       145 ~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L  179 (357)
                      +..+++|+.+++++|.+++  .....+...+|+|+.+
T Consensus        86 l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            4556667777777776643  1123445556666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.90  E-value=1.2e-11  Score=101.57  Aligned_cols=145  Identities=19%  Similarity=0.176  Sum_probs=89.9

Q ss_pred             eEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           14 KELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        14 ~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      +++++....+....+|.++..+++|++|+|++|.+.....+.++++|++|+|++|.++.  ++.+...+++|+.|++++|
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccccc
Confidence            44444333345667777888899999999999887663367788999999999987742  2223334567888888876


Q ss_pred             CCCCccC-cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHH-------
Q 018344           94 PGLKSLQ-LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW-------  165 (357)
Q Consensus        94 ~~l~~l~-l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~-------  165 (357)
                      . ++.++ +..+++|+.|++++|..  .                 .++....+.++++|+.|++++|.+....       
T Consensus       104 ~-i~~l~~~~~l~~L~~L~L~~N~i--~-----------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  163 (198)
T d1m9la_         104 Q-IASLSGIEKLVNLRVLYMSNNKI--T-----------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             E-CCCHHHHHHHHHSSEEEESEEEC--C-----------------CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHH
T ss_pred             c-ccccccccccccccccccccchh--c-----------------cccccccccCCCccceeecCCCccccCcccccchh
Confidence            4 44332 23345666777666541  0                 0000013456777888888877653311       


Q ss_pred             --HHHHhccCCccceee
Q 018344          166 --LYNQISELPFLEYLA  180 (357)
Q Consensus       166 --~~~l~~~~~~L~~L~  180 (357)
                        ...++..+|+|+.||
T Consensus       164 ~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         164 EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHHHCSSCCEES
T ss_pred             hHHHHHHHHCCCcCEeC
Confidence              123456777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=92.15  Aligned_cols=191  Identities=14%  Similarity=0.072  Sum_probs=118.8

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-C-CCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      .++.++.....+|..+.  +++++|+++++.+.. | ..+.++++|++|++++|.+....-...+.+++.++++.+..+.
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            35556666778998765  589999999988765 4 3678999999999999966321112234578999999998877


Q ss_pred             CCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEE---EEeecCCCc--eeeccccc-cccceeecccccCHHH
Q 018344           95 GLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSV---DIKVYLEPC--EVNVSSCK-NLTHLRLDGLSITDKW  165 (357)
Q Consensus        95 ~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L---~l~~~~~~~--~~~~~~~~-~L~~L~L~~~~i~~~~  165 (357)
                      .+....   +.++++|+++++.++............+++.+   ...+.....  ...+.+++ .++.++++++.++.  
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--  167 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--  167 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc--
Confidence            666554   34568999999998863111111112233333   333222210  12333333 67778888877743  


Q ss_pred             HHHHhccCCccceeeccccccccccccc----cccccEEEccccccccccc
Q 018344          166 LYNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFE  212 (357)
Q Consensus       166 ~~~l~~~~~~L~~L~l~~~~~l~~l~~~----~~~L~~L~l~~c~~L~~~~  212 (357)
                      ++......++++.+....++.++.++..    .++|++|+++++ +++++.
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~  217 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  217 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCC
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccC
Confidence            2222234566666655466667666542    578889998887 466543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=1.6e-09  Score=96.48  Aligned_cols=255  Identities=9%  Similarity=0.007  Sum_probs=120.2

Q ss_pred             ecCcccccCCCccEEEeeccccCCC------CCccCCCCCceEEeeccccC------H---HHHHHHHcCCCCccEEeee
Q 018344           27 NLPQIVFYLKSIYVLDFEFCKLEPP------RSTVTLFSLRKLCLSFVHVD------D---EVIRDMVAGCPLIEYININ   91 (357)
Q Consensus        27 ~lP~~i~~~~~L~~L~Ls~~~~~~p------~~~~~l~~L~~L~L~~~~~~------~---~~l~~l~~~~~~L~~L~L~   91 (357)
                      .+...+.+..+|+.|+|++|.+...      ..+...++|+.++++++...      .   ..+...+..+++|++|+|+
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            3444555567788888877654320      13456677888887765431      1   1233344567778888887


Q ss_pred             cCCCCCccC-------cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH-
Q 018344           92 NCPGLKSLQ-------LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-  163 (357)
Q Consensus        92 ~c~~l~~l~-------l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~-  163 (357)
                      +|.. ....       +..+++|++|++++|..........+..+..+       .........+.|+.+.++++.+++ 
T Consensus       102 ~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         102 DNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             SCCC-CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccc-ccccccchhhhhcccccchheeccccccccccccccccccccc-------ccccccccCcccceeeccccccccc
Confidence            7642 2211       11236777777776652110000000000000       000011223445666666655544 


Q ss_pred             --HHHHHHhccCCccceeecccccccc-c----c---ccccccccEEEcccccccccccccCCCcceEEeeeeeeeEecc
Q 018344          164 --KWLYNQISELPFLEYLALHYCMKLR-S----I---NISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSN  233 (357)
Q Consensus       164 --~~~~~l~~~~~~L~~L~l~~~~~l~-~----l---~~~~~~L~~L~l~~c~~L~~~~i~~~~L~~~~~~~~~~~~~~~  233 (357)
                        ..+...+..++.|+.|+++.|.--. .    +   ....++|+.|+++++ .+++.                      
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~----------------------  230 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHL----------------------  230 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHH----------------------
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccc-ccccc----------------------
Confidence              2233344556666666665443110 0    0   001334444444443 11110                      


Q ss_pred             cccceeEEEEEEecCCChHHHHHHHHHHhhcccccceeEEeeccccceecccccccCCCCCCCcceEEEEEeccchhhhH
Q 018344          234 ALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSL  313 (357)
Q Consensus       234 ~~~L~~~~l~~~~~~~~~~~~~~l~~~l~~l~~lk~L~l~~~~~~~~~~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~~~  313 (357)
                                        +. ..+...+...+.+++|++..+......+..-...+.......|++|++.++. ......
T Consensus       231 ------------------g~-~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~  290 (344)
T d2ca6a1         231 ------------------GS-SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAV  290 (344)
T ss_dssp             ------------------HH-HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHH
T ss_pred             ------------------cc-ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHH
Confidence                              00 2344555666666666665543322211111111111233668888887653 344444


Q ss_pred             HHHHHHHhhhCCCCCeeEe
Q 018344          314 ANLVDCLLWITPHAETLSI  332 (357)
Q Consensus       314 ~~~l~~Ll~~~p~le~L~l  332 (357)
                      ..+...+...+|+|++|.|
T Consensus       291 ~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHccCCCCCEEEC
Confidence            4454555557889998887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.79  E-value=2.6e-09  Score=94.72  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=83.1

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCC-CCccEE
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC-PLIEYI   88 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~-~~L~~L   88 (357)
                      .++++|  |++++....+|+.   .++|++|+|+++.+.. |.   .+.+|++|++++|.++.      +..+ +.|++|
T Consensus        38 ~~l~~L--dLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~------l~~lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHEL--ELNNLGLSSLPEL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA------LSDLPPLLEYL  103 (353)
T ss_dssp             HTCSEE--ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC------CCSCCTTCCEE
T ss_pred             cCCCEE--EeCCCCCCCCCCC---CCCCCEEECCCCCCccccc---chhhhhhhhhhhcccch------hhhhccccccc
Confidence            456655  5677778889974   4689999999998876 43   35789999999997631      1233 469999


Q ss_pred             eeecCCCCCcc-CcCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccc
Q 018344           89 NINNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS  160 (357)
Q Consensus        89 ~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~  160 (357)
                      ++++|. +..+ ....+++|+.|+++++..  .......+.+..+............+..++.++.+++.++.
T Consensus       104 ~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         104 GVSNNQ-LEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             ECCSSC-CSSCCCCTTCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccc-cccccchhhhccceeeccccccc--cccccccccccchhhccccccccccccccccceeccccccc
Confidence            999886 4444 334568999999988762  11112233455555443211111234445556666665544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=8.7e-09  Score=83.65  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC---CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c   93 (357)
                      .++.++.....+|..+.  +++++|+|++|.+..   +..+.++++|++|+|++|.+... ....+..+++|++|+|++|
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccc
Confidence            46777888889998774  689999999998753   44678999999999999977322 1334567889999999997


Q ss_pred             CCCCccC---cCCCCCccEEEecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccC
Q 018344           94 PGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (357)
Q Consensus        94 ~~l~~l~---l~~~~~L~~L~l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~  162 (357)
                      . ++.+.   +.++++|++|++++|.  +..+                .+  ..|.++++|++++|++|.+.
T Consensus        89 ~-l~~l~~~~F~~l~~L~~L~L~~N~--l~~i----------------~~--~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 K-IKEISNKMFLGLHQLKTLNLYDNQ--ISCV----------------MP--GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSC--CCEE----------------CT--TSSTTCTTCCEEECTTCCBC
T ss_pred             c-ccccCHHHHhCCCcccccccCCcc--cccc----------------CH--HHhcCCcccccccccccccc
Confidence            5 44442   4566888888888876  1111                01  24567778888898887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=1.2e-08  Score=76.58  Aligned_cols=95  Identities=20%  Similarity=0.198  Sum_probs=75.0

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~   95 (357)
                      .+|++++....+|. +.++++|++|++++|.+.. |..+..+++|++|++++|.++.  ++. +..+++|++|++++|..
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCcc
Confidence            36778888888874 7889999999999998877 6678899999999999998843  233 67899999999999863


Q ss_pred             CCcc----CcCCCCCccEEEecccC
Q 018344           96 LKSL----QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        96 l~~l----~l~~~~~L~~L~l~~c~  116 (357)
                       +.+    .+..+++|+.|++++|.
T Consensus        78 -~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          78 -QQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             -CSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             -CCCCCchhhcCCCCCCEEECCCCc
Confidence             222    24456889999998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2e-08  Score=91.95  Aligned_cols=101  Identities=21%  Similarity=0.328  Sum_probs=69.1

Q ss_pred             CeEEEEEecCCcc--eecCcccccCCCccEEEeeccccCCC------CCccCCCCCceEEeeccccCHHHHHHHHcC---
Q 018344           13 VKELKLDVGCCRI--YNLPQIVFYLKSIYVLDFEFCKLEPP------RSTVTLFSLRKLCLSFVHVDDEVIRDMVAG---   81 (357)
Q Consensus        13 v~~l~l~~~~~~~--~~lP~~i~~~~~L~~L~Ls~~~~~~p------~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~---   81 (357)
                      ++.+++  +++..  ..+...+..+++++.|+|++|.+...      ..+..+++|++|+|++|.+++..+..+...   
T Consensus         4 l~~ld~--~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           4 IQSLDI--QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEE--ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCEEEe--eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            445554  44432  22233344578999999999976531      134678999999999998877766666543   


Q ss_pred             -CCCccEEeeecCCCCCcc-------CcCCCCCccEEEecccC
Q 018344           82 -CPLIEYININNCPGLKSL-------QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        82 -~~~L~~L~L~~c~~l~~l-------~l~~~~~L~~L~l~~c~  116 (357)
                       .++|++|++++|. ++..       .+..+++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence             3579999999986 4432       13345889999999886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-08  Score=92.89  Aligned_cols=86  Identities=10%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             HhCCCeEEEEEecCC---cceecCcccccCCCccEEEeeccccCCC------CCc-cCCCCCceEEeeccccCHHH---H
Q 018344            9 FASNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLEPP------RST-VTLFSLRKLCLSFVHVDDEV---I   75 (357)
Q Consensus         9 ~~~~v~~l~l~~~~~---~~~~lP~~i~~~~~L~~L~Ls~~~~~~p------~~~-~~l~~L~~L~L~~~~~~~~~---l   75 (357)
                      .-++.+.+.|.-..-   ....++..+..+++|++|+|++|.+...      ..+ ...++|++|+|++|.+++..   +
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            346788777653321   2234555667899999999999876431      011 23468999999999986544   4


Q ss_pred             HHHHcCCCCccEEeeecCC
Q 018344           76 RDMVAGCPLIEYININNCP   94 (357)
Q Consensus        76 ~~l~~~~~~L~~L~L~~c~   94 (357)
                      ...+..+++|++|++++|.
T Consensus       105 ~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSB
T ss_pred             cchhhcccccccccccccc
Confidence            4556789999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.4e-08  Score=80.43  Aligned_cols=191  Identities=13%  Similarity=0.070  Sum_probs=111.0

Q ss_pred             CCCeEEEEEecCCcceecCccc-ccCCCccEEEeeccccCC---CCCccCCCCCceEEeecc-ccCHHHHHHHHcCCCCc
Q 018344           11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFV-HVDDEVIRDMVAGCPLI   85 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i-~~~~~L~~L~Ls~~~~~~---p~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L   85 (357)
                      +.++.++  ++++....+|... .++++|++|++++|....   +..+.++++++++.+..+ .+... ....+.++++|
T Consensus        29 ~~l~~L~--Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELR--FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEE--EESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEE--CcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            3566555  5677788899864 569999999999987644   346788999999998754 33211 12345789999


Q ss_pred             cEEeeecCCCCCcc-CcCCCCCccEEEecc--cCCCcceeEe----e-cceeeEEEEeecCCCc-eeeccccccccce-e
Q 018344           86 EYININNCPGLKSL-QLLGLNKLKEIKLDS--NRCGLERVYI----N-GVNVHSVDIKVYLEPC-EVNVSSCKNLTHL-R  155 (357)
Q Consensus        86 ~~L~L~~c~~l~~l-~l~~~~~L~~L~l~~--c~~~l~~~~~----~-~p~L~~L~l~~~~~~~-~~~~~~~~~L~~L-~  155 (357)
                      +++++.++. ++.. ....+.+++.+....  +. .+..+..    . .+.++.+.+.+..+.. .....+..+++++ .
T Consensus       106 ~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         106 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             CEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEEC
T ss_pred             cccccchhh-hccccccccccccccccccccccc-ccccccccccccccccceeeecccccccccccccccchhhhcccc
Confidence            999999975 3333 222233444443322  22 2222211    1 2367777776643321 1122233445544 4


Q ss_pred             ecccccCHHHHHHHhccCCccceeeccccccccccccc-cccccEEEccccccc
Q 018344          156 LDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEEL  208 (357)
Q Consensus       156 L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~-~~~L~~L~l~~c~~L  208 (357)
                      ++++.+++ .....+.++++|+.|+++++. +..++.. ..++..|..-++.++
T Consensus       184 l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         184 SDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTCTTCCC-CCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccccc-ccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCC
Confidence            46666632 112346889999999997654 6555543 444555543333333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.1e-08  Score=77.95  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             EEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCC-
Q 018344           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (357)
Q Consensus        17 ~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~-   95 (357)
                      .||++++....+|.....+++|++|+|++|.+..-..+..+++|++|++++|.++.- .+.+...+++|++|++++|.. 
T Consensus        22 ~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          22 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCCC
T ss_pred             EEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCC-Cccccccccccccceecccccc
Confidence            466788888889876667899999999999876633678999999999999987421 122345799999999999863 


Q ss_pred             -CCcc-CcCCCCCccEEEecccC
Q 018344           96 -LKSL-QLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        96 -l~~l-~l~~~~~L~~L~l~~c~  116 (357)
                       +..+ .+.++++|++|++++|.
T Consensus       101 ~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_         101 ELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccccccccccccchhhcCCCc
Confidence             2221 34456889999998886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.43  E-value=6.4e-09  Score=84.88  Aligned_cols=123  Identities=19%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CccEEEeeccc--cCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-cC-CCCCccEEE
Q 018344           37 SIYVLDFEFCK--LEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-LL-GLNKLKEIK  111 (357)
Q Consensus        37 ~L~~L~Ls~~~--~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-l~-~~~~L~~L~  111 (357)
                      .++.+++++..  +.. +..+..+++|++|+|++|.++.  ++. +..+++|++|++++|. ++.++ +. .+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-cccccccccccccccccc
Confidence            45556665531  111 2346678888888888887632  121 3456778888887764 33322 11 113566666


Q ss_pred             ecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          112 LDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       112 l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      +++|.                      +.....+..+++|+.|++++|.+++-.....+..+|+|+.|++++++
T Consensus       100 l~~N~----------------------i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         100 ISYNQ----------------------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CSEEE----------------------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccc----------------------ccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            65554                      11102356778899999999998653223457889999999998765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=4e-08  Score=79.61  Aligned_cols=126  Identities=15%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             CccEEEeeccccCC-CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCc--cCcCCCCCccEEEec
Q 018344           37 SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS--LQLLGLNKLKEIKLD  113 (357)
Q Consensus        37 ~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~--l~l~~~~~L~~L~l~  113 (357)
                      +.+.++.++..+.. |..+  .+++++|+|++|.++...-...+.++++|++|+++++.....  -....+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34567777777766 5443  368999999999874322233456788999999988764222  233345788888888


Q ss_pred             ccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCHHHHHHHhccCCccceeeccccc
Q 018344          114 SNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (357)
Q Consensus       114 ~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~l~~~~  185 (357)
                      +|.  +..+                .+  ..|.++++|++|+|++|.++. ..+..+.++++|++|++++++
T Consensus        87 ~N~--l~~l----------------~~--~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          87 ENK--IKEI----------------SN--KMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SCC--CCEE----------------CS--SSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCC
T ss_pred             ccc--cccc----------------CH--HHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccc
Confidence            776  1110                11  356788889999999998853 123456778888888886543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.38  E-value=7.8e-07  Score=78.18  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=61.9

Q ss_pred             CCCeEEEEEecCCcceecCcccccCCCccEEEeeccccCCCCCccCC-CCCceEEeeccccCHHHHHHHHcCCCCccEEe
Q 018344           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (357)
Q Consensus        11 ~~v~~l~l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~~~~p~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~   89 (357)
                      .+++.|  +++++...++|..   ..+|+.|+++++....   +..+ +.|++|++++|.+..  ++. .+.+++|+.|+
T Consensus        58 ~~L~~L--~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~---l~~lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          58 PHLESL--VASCNSLTELPEL---PQSLKSLLVDNNNLKA---LSDLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIID  126 (353)
T ss_dssp             TTCSEE--ECCSSCCSSCCCC---CTTCCEEECCSSCCSC---CCSCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEE
T ss_pred             CCCCEE--ECCCCCCcccccc---hhhhhhhhhhhcccch---hhhhcccccccccccccccc--ccc-hhhhccceeec
Confidence            356666  4577778899975   3579999999987664   1223 469999999997732  232 46789999999


Q ss_pred             eecCCCCCccCcCCCCCccEEEecccC
Q 018344           90 INNCPGLKSLQLLGLNKLKEIKLDSNR  116 (357)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~  116 (357)
                      ++++..- .... ....+..+.+..+.
T Consensus       127 l~~~~~~-~~~~-~~~~l~~l~~~~~~  151 (353)
T d1jl5a_         127 VDNNSLK-KLPD-LPPSLEFIAAGNNQ  151 (353)
T ss_dssp             CCSSCCS-CCCC-CCTTCCEEECCSSC
T ss_pred             ccccccc-cccc-ccccccchhhcccc
Confidence            9887632 2111 12456666665544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.31  E-value=3.8e-07  Score=80.63  Aligned_cols=172  Identities=19%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             CCCeEEEEEecCCc-----ceecCcccccCCCccEEEeeccccCCCC------------CccCCCCCceEEeeccccCHH
Q 018344           11 SNVKELKLDVGCCR-----IYNLPQIVFYLKSIYVLDFEFCKLEPPR------------STVTLFSLRKLCLSFVHVDDE   73 (357)
Q Consensus        11 ~~v~~l~l~~~~~~-----~~~lP~~i~~~~~L~~L~Ls~~~~~~p~------------~~~~l~~L~~L~L~~~~~~~~   73 (357)
                      ..++++++  +++.     ...+-..+...++|+.|+++++......            .+..+++|++|+|++|.++..
T Consensus        31 ~~l~~L~L--s~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          31 DSVKEIVL--SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             SCCCEEEC--TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCCCEEEC--cCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            46777664  4442     2234445667889999999987543210            234678999999999988443


Q ss_pred             ---HHHHHHcCCCCccEEeeecCCC-----------CCccC----cCCCCCccEEEecccCCCcce---e---Eeeccee
Q 018344           74 ---VIRDMVAGCPLIEYININNCPG-----------LKSLQ----LLGLNKLKEIKLDSNRCGLER---V---YINGVNV  129 (357)
Q Consensus        74 ---~l~~l~~~~~~L~~L~L~~c~~-----------l~~l~----l~~~~~L~~L~l~~c~~~l~~---~---~~~~p~L  129 (357)
                         .+...+..+++|++|++++|..           +..+.    ....+.|+.+.++++......   +   ....+.|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence               4555566789999999998863           00000    012367778887766521111   1   0123445


Q ss_pred             eEEEEeecCCCc-------eeeccccccccceeecccccCHHH---HHHHhccCCccceeecccc
Q 018344          130 HSVDIKVYLEPC-------EVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYC  184 (357)
Q Consensus       130 ~~L~l~~~~~~~-------~~~~~~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~L~~L~l~~~  184 (357)
                      +.+.++++.+..       ...+..+++|+.|++++|.+++..   +...+..+++|+.|++++|
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            555554432210       011334455555555555554322   2333455555555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.2e-06  Score=66.54  Aligned_cols=97  Identities=20%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             EEecCCcceecCcccccCCCccEEEeeccc-cCC--CCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCC
Q 018344           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        18 l~~~~~~~~~lP~~i~~~~~L~~L~Ls~~~-~~~--p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      ++.........|..+..+++|++|+++++. +..  +..+.++++|++|+|++|.++.-. +..+..+++|++|+|++|.
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            445566667788888888999999998764 444  346788999999999999773211 3346678899999999876


Q ss_pred             CCCccCcC--CCCCccEEEecccC
Q 018344           95 GLKSLQLL--GLNKLKEIKLDSNR  116 (357)
Q Consensus        95 ~l~~l~l~--~~~~L~~L~l~~c~  116 (357)
                       ++.++..  ...+|++|++++|.
T Consensus        92 -l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          92 -LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             -CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             -CcccChhhhccccccccccCCCc
Confidence             4444322  22467777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4.9e-06  Score=64.87  Aligned_cols=119  Identities=23%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             CccEEEeeccccCCCCCccCCCCCceEEeeccccCHHHHHHHHcCCCCccEEeeecCCCCCccC-----cCCCCCccEEE
Q 018344           37 SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-----LLGLNKLKEIK  111 (357)
Q Consensus        37 ~L~~L~Ls~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~-----l~~~~~L~~L~  111 (357)
                      ..+.|+++++....  .+..+..+..++...+  ....++.+...+++|++|+|++|. ++.+.     +..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~~--~l~~~~~~~~l~~~~~--~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSDP--DLVAQNIDVVLNRRSS--MAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSCT--TTTTTTCCCCTTSHHH--HHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCCc--hhhhccchhhcchhhh--HhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccc
Confidence            35556666654322  3444444555554444  223345556689999999999986 44332     12357888888


Q ss_pred             ecccCCCcceeEeecceeeEEEEeecCCCceeeccccccccceeecccccCH------HHHHHHhccCCccceee
Q 018344          112 LDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD------KWLYNQISELPFLEYLA  180 (357)
Q Consensus       112 l~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~i~~------~~~~~l~~~~~~L~~L~  180 (357)
                      +++|..  .                 .++. ....+..+|+.+++.+|.+++      .....++..+|+|+.||
T Consensus        98 Ls~N~i--~-----------------~l~~-l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNEL--K-----------------SERE-LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCC--C-----------------CGGG-HHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCcc--c-----------------cchh-hhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            887761  0                 0110 112233468899999987753      34456788899999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.6e-05  Score=58.74  Aligned_cols=81  Identities=11%  Similarity=-0.020  Sum_probs=56.9

Q ss_pred             cCCCccEEEeeccccCC-CCCccCCCCCceEEeeccc-cCHHHHHHHHcCCCCccEEeeecCCCCCccC---cCCCCCcc
Q 018344           34 YLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLK  108 (357)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~-p~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---l~~~~~L~  108 (357)
                      .|...+.++.++..... |..+..+++|++|+++++. ++.-. ...+.++++|+.|+|++|. ++.+.   +.++++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCccccccccccccc
Confidence            45566778888766555 7778889999999997653 43211 1235678999999999875 55543   34567888


Q ss_pred             EEEecccC
Q 018344          109 EIKLDSNR  116 (357)
Q Consensus       109 ~L~l~~c~  116 (357)
                      +|++++|+
T Consensus        84 ~L~Ls~N~   91 (156)
T d2ifga3          84 RLNLSFNA   91 (156)
T ss_dssp             EEECCSSC
T ss_pred             ceeccCCC
Confidence            88888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.02  E-value=0.00041  Score=53.76  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=19.0

Q ss_pred             CCCCCceEEeecc-ccCHHHHHHH---HcCCCCccEEeeecC
Q 018344           56 TLFSLRKLCLSFV-HVDDEVIRDM---VAGCPLIEYININNC   93 (357)
Q Consensus        56 ~l~~L~~L~L~~~-~~~~~~l~~l---~~~~~~L~~L~L~~c   93 (357)
                      +.+.|++|+|+++ .++++.+..+   +...++|++|+|++|
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            3455666666653 3444443333   234455555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.97  E-value=0.00038  Score=53.96  Aligned_cols=18  Identities=28%  Similarity=0.327  Sum_probs=8.4

Q ss_pred             HHHHHcCCCCccEEeeec
Q 018344           75 IRDMVAGCPLIEYININN   92 (357)
Q Consensus        75 l~~l~~~~~~L~~L~L~~   92 (357)
                      ++.+..+.|.|++|+|++
T Consensus         7 l~~l~~n~~~L~~L~L~~   24 (167)
T d1pgva_           7 INRLREDDTDLKEVNINN   24 (167)
T ss_dssp             HHHHHTTCSSCCEEECTT
T ss_pred             HHHHHhCCCCCcEEEeCC
Confidence            344444444555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00015  Score=56.04  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             CCCCCceEEeeccccC-HHHHHHHHcCCCCccEEeeecCC
Q 018344           56 TLFSLRKLCLSFVHVD-DEVIRDMVAGCPLIEYININNCP   94 (357)
Q Consensus        56 ~l~~L~~L~L~~~~~~-~~~l~~l~~~~~~L~~L~L~~c~   94 (357)
                      ++++|++|+|++|.++ ...+...+..+++|+.|++++|.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc
Confidence            4555555555555542 12223333445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.61  E-value=0.00085  Score=51.76  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=23.7

Q ss_pred             ccccccccceee--cccccCHH---HHHHHhccCCccceeeccc
Q 018344          145 VSSCKNLTHLRL--DGLSITDK---WLYNQISELPFLEYLALHY  183 (357)
Q Consensus       145 ~~~~~~L~~L~L--~~~~i~~~---~~~~l~~~~~~L~~L~l~~  183 (357)
                      +...++|+.++|  .++.+.++   .+...+..++.|+.|++..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            344566766555  35566553   3445566788888888753

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.30  E-value=0.026  Score=42.90  Aligned_cols=23  Identities=4%  Similarity=0.008  Sum_probs=15.7

Q ss_pred             HHHHHHHHhhhCCCCCeeEeecC
Q 018344          313 LANLVDCLLWITPHAETLSIEWP  335 (357)
Q Consensus       313 ~~~~l~~Ll~~~p~le~L~l~~~  335 (357)
                      ...++...++.+++|++|.+...
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCC
Confidence            44556666777888888887443