Citrus Sinensis ID: 018346
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | 2.2.26 [Sep-21-2011] | |||||||
| Q5C9L6 | 361 | (S)-coclaurine N-methyltr | N/A | no | 0.994 | 0.983 | 0.526 | 1e-110 | |
| C3SBW0 | 356 | Pavine N-methyltransferas | N/A | no | 0.952 | 0.955 | 0.483 | 2e-99 | |
| C3SBS8 | 350 | (S)-tetrahydroprotoberber | N/A | no | 0.952 | 0.971 | 0.472 | 4e-93 | |
| Q108P1 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.949 | 0.946 | 0.460 | 3e-85 | |
| C3SBU4 | 358 | Probable (S)-tetrahydropr | N/A | no | 0.949 | 0.946 | 0.466 | 8e-85 | |
| C3SBU5 | 358 | (S)-tetrahydroprotoberber | N/A | no | 0.949 | 0.946 | 0.457 | 3e-84 | |
| P0A9H7 | 382 | Cyclopropane-fatty-acyl-p | N/A | no | 0.585 | 0.547 | 0.327 | 4e-29 | |
| P0A9H8 | 382 | Cyclopropane-fatty-acyl-p | yes | no | 0.585 | 0.547 | 0.327 | 4e-29 | |
| P31049 | 394 | Probable fatty acid methy | yes | no | 0.691 | 0.626 | 0.265 | 1e-21 | |
| P0C5C2 | 287 | Cyclopropane mycolic acid | yes | no | 0.641 | 0.797 | 0.264 | 1e-16 |
| >sp|Q5C9L6|CNMT_THLFG (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function desciption |
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Score = 397 bits (1020), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/359 (52%), Positives = 261/359 (72%), Gaps = 4/359 (1%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
+EG A A + +L LE L+PD I++L R+ LG RL+ G K + E Q++ L+
Sbjct: 3 VEGKQVAPKKAIIVELLKKLELGLVPDDEIKKLIRIQLGRRLQWGCKSTYEEQIAQLVNL 62
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
HSLR+M IA + + +Q YE+P F K++ G K SCCYF + S TL++AE AMLEL
Sbjct: 63 THSLRQMKIATEVETLDDQMYEVPIDFLKIMNGSNLKGSCCYFKNDSTTLDEAEIAMLEL 122
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCER++++DGH+VLD+GCG G+L+LY+AQKY N ++T + NS +QKEFIEE+ R L N
Sbjct: 123 YCERAQIKDGHSVLDLGCGQGALTLYVAQKYKNSRVTAVTNSVSQKEFIEEESRKRNLSN 182
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VE+++ADI+T +M +YDRI +E+FEHMKNY+ LL+KI +WM +D LLFV H CHKTFA
Sbjct: 183 VEVLLADITTHKMPDTYDRILVVELFEHMKNYELLLRKIKEWMAKDGLLFVEHICHKTFA 242
Query: 241 YHFEDTNDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
YH+E ++DDW T+Y F GTM PSA+ LYFQDDVSVV+HW ++GKH+++T+EEWLKR
Sbjct: 243 YHYEPIDEDDWFTEYVFPAGTMIIPSASFFLYFQDDVSVVNHWTLSGKHFSRTNEEWLKR 302
Query: 299 MDNNLASIKPIMESTYG--KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+D N+ IKP+ + G + +A+K YWR F ++ E+FGYNNGEEWM +H LF+KK
Sbjct: 303 LDANVELIKPMFVTITGQCRQEAMKLINYWRGFCLSGMEMFGYNNGEEWMASHVLFKKK 361
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Involved in the biosynthesis of protoberberine alkaloids. N-methyltransferase with a substrate preference for (R,S)-norreticuline but also active with dimethoxytetrahydroisoquinoline. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4EC: 0 |
| >sp|C3SBW0|PNMT_THLFG Pavine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 166/343 (48%), Positives = 247/343 (72%), Gaps = 3/343 (0%)
Query: 16 MLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDK 75
++ +E + D IR + ++ + RL+ GYKP+ E QL+ L+ FA SL+ M +A + D
Sbjct: 14 LIKRIEHGEVSDEEIRGMMKIQVQKRLKWGYKPTHEQQLAQLVTFAQSLKGMEMAEEVDT 73
Query: 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLD 135
+ YE+P F ++ GK K+S YF D S TL+++E M++LYCER++++DG ++LD
Sbjct: 74 LDAELYEIPLPFLHIMCGKTLKFSPGYFKDESTTLDESEVYMMDLYCERAQIKDGQSILD 133
Query: 136 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195
+GCG GSL+L++AQKY CK+TGI NS +QKEFI +QC+ L+L NVEII+ D++ FE E
Sbjct: 134 LGCGHGSLTLHVAQKYRGCKVTGITNSVSQKEFIMDQCKKLDLSNVEIILEDVTKFETEI 193
Query: 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
+YDRI+++ + EHMKNY+ LKK+S W+ + LLFV H CHK FAY +E ++DDW T+Y
Sbjct: 194 TYDRIFAVALIEHMKNYELFLKKVSTWIAQYGLLFVEHHCHKVFAYQYEPLDEDDWYTEY 253
Query: 256 FFTGGT--MPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 313
F GT M S+++LLYFQ+DVSVV+HW ++GKH + ++WLKR+D+N+ +K I ES
Sbjct: 254 IFPSGTLVMSSSSILLYFQEDVSVVNHWTLSGKHPSLGFKQWLKRLDDNIDEVKEIFESF 313
Query: 314 YG-KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
YG K++A+K+ YWR F IA ++++ NNGEEWM++ LF+KK
Sbjct: 314 YGSKEKAMKFITYWRVFCIAHSQMYSTNNGEEWMLSQVLFKKK 356
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N-methyltransferase with a substrate preference for (+,-)-pavine, but also active with (R,S)-stylopine, (S)-scoulerine and (R,S)-tetrahydropalmatine. Thalictrum flavum subsp. glaucum (taxid: 150095) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 4 |
| >sp|C3SBS8|TNMT_ESCCA (S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica PE=1 SV=1 | Back alignment and function description |
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Score = 341 bits (875), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 230/343 (67%), Gaps = 3/343 (0%)
Query: 16 MLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDK 75
++ L + + D +++L R R+ GYKP+ E QL+ L F L+EM ++ + D
Sbjct: 8 IMGRLMKGEIEDEELKKLIRHQWDRRIEWGYKPTHEKQLAFNLDFIKGLKEMVMSGEIDT 67
Query: 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLD 135
++ YELPT+F + V GK K SCCYF D + T+++AE+A ELYCER++++DG TVLD
Sbjct: 68 MNKETYELPTAFLEAVFGKTVKQSCCYFKDENSTIDEAEEAAHELYCERAQIKDGQTVLD 127
Query: 136 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195
+GCG G L LYIA+KY NC +TG+ NSK Q +IE+Q LEL NV++I AD++ F+ +
Sbjct: 128 IGCGQGGLVLYIAEKYKNCHVTGLTNSKAQANYIEQQAEKLELTNVDVIFADVTKFDTDK 187
Query: 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
+YDRI +E EHMKN Q +KK+S WM ED+LLFV H HKTF ++FE ++DDW + +
Sbjct: 188 TYDRILVVETIEHMKNIQLFMKKLSTWMTEDSLLFVDHISHKTFNHNFEALDEDDWYSGF 247
Query: 256 FFTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 313
F G T+ S++ LLYFQDDVS +DHW+VNG H A++ E W K++D + + + I+E
Sbjct: 248 IFPKGCVTILSSSTLLYFQDDVSALDHWVVNGMHMARSVEAWRKKLDETIEAAREILEPG 307
Query: 314 YGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
G +AV + + RTF I E F YNNGEEWM+T LF+KK
Sbjct: 308 LGSKEAVNQVITHIRTFCIGGYEQFSYNNGEEWMITQILFKKK 350
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N-methyltransferase with a broad substrate range, accepting protoberberine alkaloids (R,S)-stylopine and (R,S)-tetrahydropalmatine, and to a lesser extent (R,S)-canadine and (S)-scoulerine. Eschscholzia californica (taxid: 3467) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|Q108P1|TNMT_PAPSO (S)-tetrahydroprotoberberine N-methyltransferase OS=Papaver somniferum PE=1 SV=1 | Back alignment and function description |
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Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 224/343 (65%), Gaps = 4/343 (1%)
Query: 17 LSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKA 76
L L + + D +++L + RL+ GYK S + QLS L F SL++M ++ + +
Sbjct: 16 LGRLLKGEIKDEELKKLIKFQFEKRLQWGYKSSHQEQLSFNLDFIKSLKKMEMSGEIETM 75
Query: 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDV 136
++ YELP+ F + V GK K S CYF+ S T+++AE+A ELYCER++++DG TVLD+
Sbjct: 76 NKETYELPSEFLEAVFGKTVKQSMCYFTHESATIDEAEEAAHELYCERAQIKDGQTVLDI 135
Query: 137 GCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196
GCG G L LYIAQKY NC +TG+ NSK Q ++ +Q L L NV+ I+AD++ +E + +
Sbjct: 136 GCGQGGLVLYIAQKYKNCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILADVTQYESDKT 195
Query: 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 256
YDR+ IE EHMKN Q +KK+S WM +++LLFV H CHKTFA+ FE ++DDW + +
Sbjct: 196 YDRLLMIEAIEHMKNLQLFMKKLSTWMTKESLLFVDHVCHKTFAHFFEAVDEDDWYSGFI 255
Query: 257 FTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI-MEST 313
F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+ + K I +
Sbjct: 256 FPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNMEAAKEILLPGL 315
Query: 314 YGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
G + V V + RTF + E F NNG+EWMV LF+KK
Sbjct: 316 GGSHETVNGVVTHIRTFCMGGYEQFSMNNGDEWMVAQLLFKKK 358
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Involved in the biosynthesis of protopine and benzophenanthridine alkaloids. Catalyzes the conversion of the protoberberine alkaloids stylopine, canadine, and tetrahydropalmatine to their corresponding N-methylated derivatives. No activity with dimethoxytetrahydroisoquinoline, methylisoquinolinediol, norlaudanosoline, (R,S)-tetrahydroxyberbine, (S)-scoulerine or (R,S)-pavine as substrates. Papaver somniferum (taxid: 3469) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU4|TNMT2_PAPBR Probable (S)-tetrahydroprotoberberine N-methyltransferase 2 OS=Papaver bracteatum PE=2 SV=1 | Back alignment and function description |
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Score = 314 bits (804), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 160/343 (46%), Positives = 225/343 (65%), Gaps = 4/343 (1%)
Query: 17 LSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKA 76
L L R + D +++L + L RL+ GYK S + QLS L F +SL++M ++ Q +
Sbjct: 16 LGRLLRGEINDEELKKLIKYQLEKRLQWGYKSSHQEQLSFNLDFINSLKKMGMSGQVEAF 75
Query: 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDV 136
+ YELPT F+ GK K S CYF S T+++AE+A ELYCER++++DG TVLD+
Sbjct: 76 TNEVYELPTECFEAAYGKSMKLSGCYFKHESSTIDEAEEASHELYCERAQIKDGQTVLDI 135
Query: 137 GCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196
GCG G L LY+AQKY NC +TG+ NSK Q +I +Q L L+NV++I+AD++ +E + +
Sbjct: 136 GCGQGGLVLYVAQKYKNCHVTGLTNSKEQVNYILKQAEKLGLRNVDVILADVTQYESDKT 195
Query: 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 256
YDRI I + EHMKN Q +KK+S WM ED+LLFV H CHKTF + FE ++DDW + Y
Sbjct: 196 YDRILVIGVVEHMKNMQLFIKKLSTWMAEDSLLFVDHSCHKTFNHFFEALDEDDWYSGYI 255
Query: 257 FTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTY 314
F G T SA+ LLYFQDDVSVVDHW+VNG H+A+T + W K++D N+ ++K I+
Sbjct: 256 FPPGCATFLSADSLLYFQDDVSVVDHWVVNGMHFARTVDAWRKKLDKNMEAVKEILLPGL 315
Query: 315 GKD-QAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
G + +AV + + RT + F N+G+EWM LF+KK
Sbjct: 316 GGNHEAVNGVITHIRTCCVGGYVQFSLNDGDEWMNAQLLFKKK 358
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Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|C3SBU5|TNMT1_PAPBR (S)-tetrahydroprotoberberine N-methyltransferase 1 OS=Papaver bracteatum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/343 (45%), Positives = 223/343 (65%), Gaps = 4/343 (1%)
Query: 17 LSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKA 76
L L + + D +++L + RL+ GYK S + QLS L F SL++M ++ + +
Sbjct: 16 LGRLLKGEIKDEELKKLIKFQFEKRLQWGYKSSHQEQLSFNLDFIKSLKKMEMSGEIETM 75
Query: 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDV 136
++ YELP+ F + V GK K S CYF S T+++AE+A ELYCER++++DG TVLD+
Sbjct: 76 NKETYELPSEFLEAVFGKTVKQSMCYFKHESATIDEAEEAAHELYCERAQIKDGQTVLDI 135
Query: 137 GCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196
GCG G L LYIA+KY C +TG+ NSK Q ++ +Q L L NV+ I+AD++ +E + +
Sbjct: 136 GCGQGGLVLYIARKYKKCHVTGLTNSKAQVNYLLKQAEKLGLTNVDAILADVTQYESDKT 195
Query: 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 256
YDR+ IE EHMKN Q +KK+S WM E++LLFV H CHKTFA+ FE ++DDW + +
Sbjct: 196 YDRLLMIEAIEHMKNLQLFMKKLSTWMTEESLLFVDHVCHKTFAHFFEAVDEDDWYSGFI 255
Query: 257 FTGG--TMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI-MEST 313
F G T+ +AN LLYFQDDVSVVDHW+VNG H A++ + W K +D N+ + K I +
Sbjct: 256 FPPGCATILAANSLLYFQDDVSVVDHWVVNGMHMARSVDIWRKALDKNMEAAKEILLPGL 315
Query: 314 YGKDQAVKWTV-YWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
G +AV V + RTF + E F N+G+EWMV LF+KK
Sbjct: 316 GGSHEAVNGVVTHIRTFCMGGYEQFSMNDGDEWMVAQLLFKKK 358
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N-methyltransferase with a strict substrate specificity for (R,S)-tetrahydropalmatine or (R,S)-stylopine. Papaver bracteatum (taxid: 215227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 2 |
| >sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
DRI S+ MFEH+ KNY + + +K + + +H K D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKK-----TDLNVDPWINKY 284
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
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Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 17/264 (6%)
Query: 80 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 139
HY++ +F++L L + YSC YF + TL+ A++ + C + RL G +LDVGCG
Sbjct: 110 HYDVSNAFYQLWLDQDMAYSCAYFREPDNTLDQAQQDKFDHLCRKLRLNAGDYLLDVGCG 169
Query: 140 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 198
WG L+ + A++Y + K+ GI SK Q + ++ + L + V++ + D + +D
Sbjct: 170 WGGLARFAAREY-DAKVFGITLSKEQLKLGRQRVKAEGLTDKVDLQILDYRDLPQDGRFD 228
Query: 199 RIYSIEMFEHMKNYQNLL---KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
++ S+ MFEH+ + NL +K+ ++E L+ H K ++I +Y
Sbjct: 229 KVVSVGMFEHV-GHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPVGRGAGEFIDRY 287
Query: 256 FFTGGTMPSANLL--LYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 313
F G +P +++ + + VVD + HYA+T W + ++N L ++
Sbjct: 288 VFPHGELPHLSMISASICEAGLEVVDVESLR-LHYAKTLHHWSENLENQLHKAAALVPE- 345
Query: 314 YGKDQAVKWTVYWRTFFIAVAELF 337
K WR + A F
Sbjct: 346 -------KTLRIWRLYLAGCAYAF 362
|
Pseudomonas putida (taxid: 303) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 24/253 (9%)
Query: 67 MPIAIQTDKAKEQ-HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 125
MP ++ A Q HY+L FF+L L YSC YF TL++A+ A ++L +
Sbjct: 1 MPDELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKL 60
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEII 184
L+ G T+LDVGCGWG+ + +KY + + G+ SK Q +++ E L++ ++
Sbjct: 61 GLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 119
Query: 185 VADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC------- 235
+A F + DRI SI FEH + Y + + D ++ +H
Sbjct: 120 LAGWEQF--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI 177
Query: 236 -HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVN-----GKHYA 289
+ F +I F GG +PS ++ + + + + V HYA
Sbjct: 178 HERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV----QECASANGFTVTRVQSLQPHYA 233
Query: 290 QTSEEWLKRMDNN 302
+T + W + N
Sbjct: 234 KTLDLWSAALQAN 246
|
Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| 343887280 | 357 | coclaurine N-methyltransferase [Citrus u | 1.0 | 1.0 | 1.0 | 0.0 | |
| 224142824 | 355 | predicted protein [Populus trichocarpa] | 0.994 | 1.0 | 0.850 | 0.0 | |
| 449447151 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.994 | 1.0 | 0.797 | 1e-174 | |
| 225429586 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.991 | 0.997 | 0.830 | 1e-172 | |
| 388493772 | 358 | unknown [Medicago truncatula] gi|3884968 | 0.994 | 0.991 | 0.816 | 1e-169 | |
| 357465789 | 355 | Cyclopropane-fatty-acyl-phospholipid syn | 0.994 | 1.0 | 0.816 | 1e-168 | |
| 297798634 | 355 | coclaurine N-methyltransferase [Arabidop | 0.994 | 1.0 | 0.766 | 1e-168 | |
| 356507030 | 355 | PREDICTED: (S)-coclaurine N-methyltransf | 0.994 | 1.0 | 0.794 | 1e-167 | |
| 217072698 | 358 | unknown [Medicago truncatula] gi|3885016 | 0.994 | 0.991 | 0.805 | 1e-165 | |
| 21593795 | 355 | coclaurine N-methyltransferase [Arabidop | 0.994 | 1.0 | 0.752 | 1e-165 |
| >gi|343887280|dbj|BAK61826.1| coclaurine N-methyltransferase [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF
Sbjct: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL
Sbjct: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN
Sbjct: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA
Sbjct: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD
Sbjct: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 357
NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME
Sbjct: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKME 357
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142824|ref|XP_002324742.1| predicted protein [Populus trichocarpa] gi|222866176|gb|EEF03307.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/355 (85%), Positives = 327/355 (92%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME +M Y+ATV++ML+SLERNLLPDAVIRRL+R+LL RLRS YK S+ELQL+DLLQF
Sbjct: 1 MERLMQVPYEATVKVMLASLERNLLPDAVIRRLTRMLLADRLRSCYKTSSELQLADLLQF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
HSL+EMPIAI+TDK K QHYELPTSFFKLVLGK KYSCCYFSD S TLEDAEKAMLEL
Sbjct: 61 VHSLKEMPIAIKTDKPKTQHYELPTSFFKLVLGKNLKYSCCYFSDKSNTLEDAEKAMLEL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS+L+DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS TQK I+EQCR L+LQN
Sbjct: 121 YCERSQLKDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSTTQKVHIDEQCRDLQLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VEIIVA+ISTFEM+ASYDRIYSIEMFEHMKNY +LL KISKWMK+D L FVH+FCHK FA
Sbjct: 181 VEIIVANISTFEMQASYDRIYSIEMFEHMKNYGDLLNKISKWMKQDGLHFVHYFCHKQFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED N+DDWIT+YFFTGGTMPSANLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD
Sbjct: 241 YHFEDVNEDDWITRYFFTGGTMPSANLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
NLA+IKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMV HFLF KK
Sbjct: 301 RNLAAIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFNKK 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447151|ref|XP_004141332.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] gi|449486691|ref|XP_004157370.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 283/355 (79%), Positives = 319/355 (89%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
M ++ YDATV L L+SLERNLLPDA+IR +RLLL RLRSGYKPS++LQLS+LL F
Sbjct: 1 MAKLIQIPYDATVHLALASLERNLLPDAIIRTFTRLLLASRLRSGYKPSSQLQLSELLHF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
HSLREMPIAI+TDK K QHYE+PTSFFKLVLGK KYSCCYF+D S TLEDAE AML++
Sbjct: 61 VHSLREMPIAIKTDKPKAQHYEVPTSFFKLVLGKNLKYSCCYFNDKSSTLEDAEDAMLQM 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS+L+DGHTVLDVGCGWGSLSLYIAQKY NC +TGICNS TQK +IE++C+ L+L N
Sbjct: 121 YCERSQLKDGHTVLDVGCGWGSLSLYIAQKYKNCTVTGICNSITQKAYIEDRCQDLQLHN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
V IIVADIST+EMEA YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVH+FCHK FA
Sbjct: 181 VNIIVADISTYEMEAEYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHYFCHKVFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED NDDDWIT+YFF GGTM S+NLLLYFQDDVS+VDHWLVNGKHY+QTSEEWLKRMD
Sbjct: 241 YHFEDVNDDDWITRYFFEGGTMLSSNLLLYFQDDVSIVDHWLVNGKHYSQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
N+ASIKPIM +TYGKD AVKWTVYWRTFFIAVAELFGYNNGEEWMV+HFLF+KK
Sbjct: 301 ENIASIKPIMATTYGKDSAVKWTVYWRTFFIAVAELFGYNNGEEWMVSHFLFKKK 355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429586|ref|XP_002280292.1| PREDICTED: (S)-coclaurine N-methyltransferase [Vitis vinifera] gi|296081677|emb|CBI20682.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/354 (83%), Positives = 326/354 (92%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
MEG+M YDATVRLML+SLERNLLPDA++RRL+RLLL RLRSGYKPSAELQLS LL F
Sbjct: 1 MEGMMQVPYDATVRLMLASLERNLLPDALVRRLTRLLLASRLRSGYKPSAELQLSSLLHF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSL EMPIAI+T+ K QHYELPTSFFKLVLGK KYSCCYF D S TLEDAE AMLE+
Sbjct: 61 AHSLEEMPIAIKTEDPKSQHYELPTSFFKLVLGKNLKYSCCYFPDKSSTLEDAENAMLEM 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YC+R+++EDGHTVLD+GCGWGSLSLYIAQKY+NC+ITGICNSKTQK +IEEQC+ L+LQN
Sbjct: 121 YCKRAQVEDGHTVLDIGCGWGSLSLYIAQKYTNCRITGICNSKTQKAYIEEQCQELQLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VEIIVADIST EMEA+YDRI+SIEMFEHMKNY++LLKKIS WMK+D+LLFVHHFCHK FA
Sbjct: 181 VEIIVADISTLEMEATYDRIFSIEMFEHMKNYKDLLKKISGWMKQDSLLFVHHFCHKAFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED +DDDWIT+YFF+GGTMP+ANLLLYFQ+DVSVVDHWLVNGKHYAQTSEEWLKRMD
Sbjct: 241 YHFEDKSDDDWITRYFFSGGTMPAANLLLYFQEDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
NLASIKPIMESTYGKD AVKWTVYWRTFFI+VAELF YN+GEEWMV FLF+K
Sbjct: 301 KNLASIKPIMESTYGKDSAVKWTVYWRTFFISVAELFEYNDGEEWMVALFLFKK 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388493772|gb|AFK34952.1| unknown [Medicago truncatula] gi|388496886|gb|AFK36509.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/355 (81%), Positives = 320/355 (90%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME +MH Y+ TV+LML SLERNLLPD VIRRL+RLLL RLRS YKPS+ELQLSDLLQF
Sbjct: 4 MEEMMHLPYNTTVKLMLGSLERNLLPDTVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQF 63
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSL++MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+L
Sbjct: 64 AHSLQDMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKL 123
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQN
Sbjct: 124 YCERSNLKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQN 183
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
V+IIVADISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FA
Sbjct: 184 VDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFA 243
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD
Sbjct: 244 YHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMD 303
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
N SIKPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 304 KNKTSIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465789|ref|XP_003603179.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] gi|355492227|gb|AES73430.1| Cyclopropane-fatty-acyl-phospholipid synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/355 (81%), Positives = 320/355 (90%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME +MH Y+ TV+LML SLERNLLPD VIRRL+RLLL RLRS YKPS+ELQLSDLLQF
Sbjct: 1 MEEMMHLPYNTTVKLMLGSLERNLLPDTVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSL++MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+L
Sbjct: 61 AHSLQDMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS L+DGHTVLDVGCGWGSL+L+IA+ YS+ ++TGICNS TQK FIEE+CR L+LQN
Sbjct: 121 YCERSNLKDGHTVLDVGCGWGSLTLFIAKNYSSSRVTGICNSTTQKAFIEEKCRELQLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
V+IIVADISTFEMEASYDRI+SIEMFEHMKNY++LLKKIS WMKED LLFVHHFCHK FA
Sbjct: 181 VDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLLKKISIWMKEDGLLFVHHFCHKAFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD
Sbjct: 241 YHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
N SIKPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 301 KNKTSIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798634|ref|XP_002867201.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297313037|gb|EFH43460.1| coclaurine N-methyltransferase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 272/355 (76%), Positives = 318/355 (89%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME I+ AY A+V+ +L+ LE+NLLPD VIRRL+RLLL GRLRSGYKP+AE+QLSDLL+F
Sbjct: 1 MEKIIDVAYGASVKAVLTLLEKNLLPDLVIRRLTRLLLAGRLRSGYKPTAEMQLSDLLRF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
S+++MPIAI T+K K QHYELPT+FF+LVLG+ KYS CYFS+ S +LEDAE+A+L L
Sbjct: 61 VDSIKKMPIAINTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSTSLEDAEEAILAL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCER+++EDG +VLDVGCGWGSLSLYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN
Sbjct: 121 YCERAKVEDGQSVLDVGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VEIIVADISTFE E +YDR++SIEMFEHMKNY LLKKI KWMKED+LLFVH+FCHKTFA
Sbjct: 181 VEIIVADISTFEHEGTYDRVFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFCHKTFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED NDDDWIT++FF+GGTMPSANLLLYFQ++VS+VDHWLVNGKHYA+TSEEWLKRMD
Sbjct: 241 YHFEDVNDDDWITRHFFSGGTMPSANLLLYFQENVSIVDHWLVNGKHYAKTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+ +IK IME TYGK++AVKW VYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 301 KEIVAIKEIMEVTYGKEEAVKWMVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507030|ref|XP_003522274.1| PREDICTED: (S)-coclaurine N-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/355 (79%), Positives = 318/355 (89%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
MEG M AY+ V+LML++LERN+LPD + RRL+RLLL RLRS YKPS++LQLSDLL F
Sbjct: 1 MEGTMQLAYETVVKLMLAALERNVLPDVITRRLTRLLLATRLRSAYKPSSQLQLSDLLYF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSL+EMPIAI TDK K QHYELPT+FFKLVLG KYSCCYFS AS TL+DAE+AML+L
Sbjct: 61 AHSLQEMPIAINTDKPKSQHYELPTAFFKLVLGNNLKYSCCYFSSASMTLDDAEEAMLKL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS L+DGHTVLDVGCGWGSL+LYIA+ Y+NC++TGICNS TQK +IEE+CR L+LQN
Sbjct: 121 YCERSNLKDGHTVLDVGCGWGSLALYIAKNYTNCRVTGICNSTTQKAYIEEKCRDLQLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
+ IIVADISTFEME SYDRI+SIEMFEHMKNY++LLKKISKWMKED+LLFVH+FCHK FA
Sbjct: 181 LNIIVADISTFEMETSYDRIFSIEMFEHMKNYKDLLKKISKWMKEDSLLFVHYFCHKAFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED N+DDWIT+YFFTGGTMPSANLLLYFQDDV+V +HWLVNGKHYAQTSEEWLKRMD
Sbjct: 241 YHFEDKNEDDWITRYFFTGGTMPSANLLLYFQDDVTVTNHWLVNGKHYAQTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+ IKPIM+STYGKD A KWT YWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 301 QRMTFIKPIMQSTYGKDSATKWTAYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072698|gb|ACJ84709.1| unknown [Medicago truncatula] gi|388501626|gb|AFK38879.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/355 (80%), Positives = 317/355 (89%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME +MH Y+ TV+LML SLERNLLPD VIRRL+RLLL RLRS YKPS+ELQLSDLLQF
Sbjct: 4 MEEMMHLPYNTTVKLMLGSLERNLLPDTVIRRLTRLLLSTRLRSSYKPSSELQLSDLLQF 63
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
AHSL++MPIA+ TD K QHYELPTSFFKLVLG KYS CYFS ASKTLEDAE+ ML+L
Sbjct: 64 AHSLQDMPIAVSTDVPKSQHYELPTSFFKLVLGNNLKYSSCYFSSASKTLEDAEEEMLKL 123
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCERS L+DGHTVLDVGCG GSL+L+IA+ YS+ ++ GICNS TQK FIEE+CR L+LQ+
Sbjct: 124 YCERSNLKDGHTVLDVGCGRGSLTLFIAKNYSSSRVAGICNSTTQKAFIEEKCRELQLQD 183
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
V+IIVADISTFEMEASYDRI+SIEMFEHMKNY++L KKIS WMKED LLFVHHFCHK FA
Sbjct: 184 VDIIVADISTFEMEASYDRIFSIEMFEHMKNYKDLPKKISIWMKEDGLLFVHHFCHKAFA 243
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED N+DDWIT+YFFTGGTMP+ANLLLYFQDDV+V++HWLVNGKHYAQTSEEWLKRMD
Sbjct: 244 YHFEDKNEDDWITRYFFTGGTMPAANLLLYFQDDVTVINHWLVNGKHYAQTSEEWLKRMD 303
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
N SIKPIMESTYGKD A KWTVYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 304 KNKTSIKPIMESTYGKDSATKWTVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 358
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21593795|gb|AAM65762.1| coclaurine N-methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 267/355 (75%), Positives = 316/355 (89%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQF 60
ME I+ AY A+V++ L+ LE NLLPD VIRRL+RLLL GRLRSGYKP+AE+QLSDLL+F
Sbjct: 1 MEKIIDVAYGASVKVGLTLLEMNLLPDIVIRRLTRLLLAGRLRSGYKPTAEMQLSDLLRF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
S+++MPIAI T+K K QHYELPT+FF+LVLG+ KYS CYFS+ S +LEDAE+A+L L
Sbjct: 61 VDSIKKMPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLEDAEEAILAL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCER+++EDG +VLD+GCGWGSLSLYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN
Sbjct: 121 YCERAKVEDGQSVLDIGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
+EIIVADISTFE E +YDRI+SIEMFEHMKNY LLKKI KWMKED+LLFVH+FCHKTFA
Sbjct: 181 IEIIVADISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFCHKTFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED NDDDWIT++FF+GGTMPSA+LLLYFQ++VS+VDHWLV+G HYA+TSEEWLKRMD
Sbjct: 241 YHFEDVNDDDWITRHFFSGGTMPSADLLLYFQENVSIVDHWLVSGTHYAKTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+ ++K IME TYGK++AVKW VYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 301 KEIVAVKEIMEVTYGKEEAVKWMVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| TAIR|locus:2125924 | 355 | AT4G33110 [Arabidopsis thalian | 0.994 | 1.0 | 0.715 | 5.9e-144 | |
| TAIR|locus:2125934 | 355 | AT4G33120 [Arabidopsis thalian | 0.994 | 1.0 | 0.684 | 1.2e-138 | |
| TIGR_CMR|GSU_2318 | 359 | GSU_2318 "cyclopropane-fatty-a | 0.946 | 0.941 | 0.457 | 9.1e-84 | |
| UNIPROTKB|G4MND9 | 351 | MGG_06926 "Cyclopropane-fatty- | 0.921 | 0.937 | 0.416 | 4.1e-72 | |
| UNIPROTKB|P0A9H7 | 382 | cfa "cyclopropane fatty acyl p | 0.585 | 0.547 | 0.327 | 8.8e-31 | |
| TIGR_CMR|CJE_1317 | 387 | CJE_1317 "cyclopropane-fatty-a | 0.703 | 0.648 | 0.297 | 3.5e-27 | |
| DICTYBASE|DDB_G0283847 | 430 | DDB_G0283847 "cyclopropane fat | 0.680 | 0.565 | 0.292 | 3.4e-25 | |
| UNIPROTKB|Q9KSY4 | 432 | VC_1122 "Cyclopropane-fatty-ac | 0.725 | 0.599 | 0.283 | 4.6e-23 | |
| TIGR_CMR|VC_1122 | 432 | VC_1122 "cyclopropane-fatty-ac | 0.725 | 0.599 | 0.283 | 4.6e-23 | |
| TIGR_CMR|BA_3460 | 390 | BA_3460 "cyclopropane-fatty-ac | 0.717 | 0.656 | 0.267 | 5.3e-22 |
| TAIR|locus:2125924 AT4G33110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
Identities = 254/355 (71%), Positives = 302/355 (85%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIXXXXXXXXXXXXXXXYKPSAELQLSDLLQF 60
ME I+ AY A+V++ L+ LE NLLPD VI YKP+AE+QLSDLL+F
Sbjct: 1 MEKIIDVAYGASVKVGLTLLEMNLLPDIVIRRLTRLLLAGRLRSGYKPTAEMQLSDLLRF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
S+++MPIAI T+K K QHYELPT+FF+LVLG+ KYS CYFS+ S +LEDAE+A+L L
Sbjct: 61 VDSIKKMPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLEDAEEAILAL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
YCER+++EDG +VLD+GCGWGSLSLYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN
Sbjct: 121 YCERAKVEDGQSVLDIGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
+EIIVADISTFE E +YDRI+SIEMFEHMKNY LLKKI KWMKED+LLFVH+FCHKTFA
Sbjct: 181 IEIIVADISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFCHKTFA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED NDDDWIT++FF+GGTMPSA+LLLYFQ++VS+VDHWLV+G HYA+TSEEWLKRMD
Sbjct: 241 YHFEDVNDDDWITRHFFSGGTMPSADLLLYFQENVSIVDHWLVSGTHYAKTSEEWLKRMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+ ++K IME TYGK++AVKW VYWRTFFIAVAELFGYNNGEEWMV HFLF+KK
Sbjct: 301 KEIVAVKKIMEVTYGKEEAVKWMVYWRTFFIAVAELFGYNNGEEWMVAHFLFKKK 355
|
|
| TAIR|locus:2125934 AT4G33120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
Identities = 243/355 (68%), Positives = 295/355 (83%)
Query: 1 MEGIMHAAYDATVRLMLSSLERNLLPDAVIXXXXXXXXXXXXXXXYKPSAELQLSDLLQF 60
ME I+ AY A+V+ L+ LE+NLLPD VI YKP+AE+QLSDLL+F
Sbjct: 1 MEKIIDVAYGASVKAGLTLLEKNLLPDLVIRRLIRLLLASRLRSVYKPTAEMQLSDLLRF 60
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
SL++MPIAI T+ AK QHYELPT+FF+ LG+ KYSCCY+S+ S +LE+A +AML L
Sbjct: 61 VDSLKKMPIAINTETAKTQHYELPTAFFEHALGRNIKYSCCYYSNDSSSLEEAGEAMLAL 120
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
CER+++EDG +VLD+GCGWGSL+LYIA+KYS CK+TGICNSKTQK FI+E+CR L LQN
Sbjct: 121 SCERAKVEDGQSVLDIGCGWGSLTLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQN 180
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
VEII ADISTFE E +YDRI+SIEMFEHMKNY LLKKI WMKED+LLFVH+ CHKT+A
Sbjct: 181 VEIIAADISTFEHEGTYDRIFSIEMFEHMKNYGELLKKIGNWMKEDSLLFVHYLCHKTYA 240
Query: 241 YHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMD 300
YHFED NDDDWIT++FF+GGTMPSA+LLLYFQ++VS++DHWLVNG HYA+TSEEWLK MD
Sbjct: 241 YHFEDVNDDDWITRHFFSGGTMPSADLLLYFQENVSIMDHWLVNGTHYAKTSEEWLKGMD 300
Query: 301 NNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355
+ ++K IME TYGK++AVKWTVYWRTFFIA+AELF YNNG+EWM+ HFLF+KK
Sbjct: 301 KEIVAVKEIMEVTYGKEEAVKWTVYWRTFFIALAELFAYNNGDEWMIAHFLFKKK 355
|
|
| TIGR_CMR|GSU_2318 GSU_2318 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 155/339 (45%), Positives = 212/339 (62%)
Query: 16 MLSSLERNLLPDAVIXXXXXXXXXXXXXXXYKPSAELQLSDLLQFAHSLREMPIAIQTDK 75
M+S +E +LPDAVI E + +F L P+A++T
Sbjct: 1 MVSLMEHGMLPDAVIRSGIRRLLMKRLQEESCGDTEADRARQREFFEQLSHSPLAMETGA 60
Query: 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLD 135
A +QHYELP FF LVLG KYSCC + L AE+AML L C+R+ L DG +L+
Sbjct: 61 ANKQHYELPPDFFSLVLGPRRKYSCCLYPPGVDDLATAEEAMLRLTCQRAGLADGMDILE 120
Query: 136 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195
+GCGWGSL+L++A+ Y + +IT + NS Q++FI+ CR NV +I AD++ F +E
Sbjct: 121 LGCGWGSLTLWMAEHYPDARITAVSNSAPQRQFIQGACRGRGFGNVRVITADMNDFTIEK 180
Query: 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
++DR+ S+EMFEHM+NY LL++I+ W+K+D LFVH FCH+T AY F+ +DDW+ +Y
Sbjct: 181 TFDRVVSVEMFEHMRNYAELLRRIAGWLKDDGRLFVHIFCHRTLAYLFQTDGEDDWMGRY 240
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYG 315
FFTGG MPS +LL YF D ++V DHW V G+HY +T + WL+RMD I I Y
Sbjct: 241 FFTGGIMPSDHLLFYFNDHLAVEDHWRVGGRHYQRTCDGWLERMDTERRKILEIFWDVYE 300
Query: 316 KDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
D V W WR FF+A +ELFGY+ G EW V+H+L RK
Sbjct: 301 GDAPV-WFQRWRVFFMACSELFGYSEGNEWFVSHYLLRK 338
|
|
| UNIPROTKB|G4MND9 MGG_06926 "Cyclopropane-fatty-acyl-phospholipid synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 139/334 (41%), Positives = 198/334 (59%)
Query: 20 LERNLLPDAVIXXXXXXXXXXXXXXXYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQ 79
L+ LP AVI S E +++ LR PIA++T A Q
Sbjct: 7 LDGGYLPHAVIRAGIRRQLAARIAMSTSTSLEADYERKMRYIELLRTRPIAVETAAANSQ 66
Query: 80 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 139
HYE+ T LG KYS C + +TL AE AML Y E+++LEDG +LD+GCG
Sbjct: 67 HYEVGTGVLAACLGPRMKYSACLYPKGGETLAQAEVAMLRTYLEKAQLEDGMDILDLGCG 126
Query: 140 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YD 198
WGS +L+ A+ +IT NSKTQKE+I+ + + L N+++I +I+ +E E + +D
Sbjct: 127 WGSGALFFAEMLPGARITAFSNSKTQKEYIDSKAQEKSLTNLKVITGNIADYEFEQNTFD 186
Query: 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT 258
R+ SIEMFEHMKNY+ L+ K+S+ ++ LFVH F H+ Y FE+ W++ +FFT
Sbjct: 187 RVVSIEMFEHMKNYELLMAKVSRALRPGGKLFVHIFAHRDSPYDFEE----GWMSTHFFT 242
Query: 259 GGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQ 318
GGTMPS +LLLYFQ ++ + W +NGKHY++T E+WL +M N I P + TYG+
Sbjct: 243 GGTMPSTDLLLYFQREMKIEKQWWINGKHYSKTCEDWLAKMIKNKKEIWPHLVETYGEAD 302
Query: 319 AVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLF 352
A W W+ F++A +ELF Y NG+ W V H+LF
Sbjct: 303 ATTWYNRWQIFYMACSELFNYENGDTWGVAHYLF 336
|
|
| UNIPROTKB|P0A9H7 cfa "cyclopropane fatty acyl phospholipid synthase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 73/223 (32%), Positives = 117/223 (52%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
++HY+L F +L + +YSC Y+ DA LE A++A L++ CE+ +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFSRMLDPFMQYSCAYWKDADN-LESAQQAKLKMICEKLQLKPGMRVLDIG 175
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG L+ Y+A Y + + G+ S Q++ +E+C L+ V I++ D ++ +
Sbjct: 176 CGWGGLAHYMASNY-DVSVVGVTISAEQQKMAQERCEGLD---VTILLQDYR--DLNDQF 229
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
DRI S+ MFEH+ KNY + + +K + + +H T D N D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLH-----TIGSKKTDLNVDPWINKY 284
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
F G +PS + + V++ W G Y T W +R
Sbjct: 285 IFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYER 327
|
|
| TIGR_CMR|CJE_1317 CJE_1317 "cyclopropane-fatty-acyl-phospholipid synthase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 84/282 (29%), Positives = 139/282 (49%)
Query: 72 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGH 131
Q K + HY++ F+KL L YSC YF + + TL +A+ +E ++ L++G
Sbjct: 104 QESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGE 163
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST 190
+LD+GCGWG LS+ AQKY K+ GI S+ Q + +E+ + L L++ +EI + +
Sbjct: 164 KLLDIGCGWGWLSIMAAQKYG-VKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQD 222
Query: 191 FEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
E E +D++ S+ MFEH+ +N K+ + +K + +H A TN
Sbjct: 223 LEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSI----LAMFEGKTNA 278
Query: 249 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHW---LVNGK----HYAQTSEEWLKRMDN 301
WI KY F GG +PS ++ VS + W L+ + HYA+T + W D
Sbjct: 279 --WIDKYIFPGGYLPS------LREVVSAMSEWDFHLLLAESLRMHYAKTLDLW----DE 326
Query: 302 NLASIKPIMESTYGKDQAVKWTVYWRT----FFIAVAELFGY 339
N + + Y ++ W +Y R+ F + +LF +
Sbjct: 327 NFNEVLDKVREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQF 368
|
|
| DICTYBASE|DDB_G0283847 DDB_G0283847 "cyclopropane fatty acid synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 74/253 (29%), Positives = 125/253 (49%)
Query: 59 QFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAML 118
+F H L I + K HY+L FKL L K YSC YF+ + LE+A+ +
Sbjct: 132 RFVHYLHRNTIEGSKENIKA-HYDLSNDMFKLFLDKTMSYSCAYFNHREQDLEEAQYNKI 190
Query: 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178
+++ L+ H +L++GCGWG+L++ A K + C++TGI S+ Q ++ E+ + L
Sbjct: 191 RKLIDQANLKKDHHLLEIGCGWGALAIE-AVKRTGCRVTGISLSQEQLKYGRERVKEEGL 249
Query: 179 QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236
++ I + I + +D I S EM E + +NY+ + + + +K + +L +
Sbjct: 250 ED-RIDLQYIDYRNVVGQFDSIISCEMLEAVGYENYKTYFQSVERLLKPNGVLVLQFITF 308
Query: 237 KTFAYHFEDTNDD-DWITKYFFTGGTMPSANLLLYFQDDVS--VVDHWLVNGKHYAQTSE 293
K FE D+I KY F GG +PS ++ + S V+ + + G HYA T +
Sbjct: 309 KD--QDFEGLKKRCDFIQKYIFPGGLLPSITAVINSATENSNLVLQNSVTFGTHYALTLD 366
Query: 294 EWLKRMDNNLASI 306
W +N I
Sbjct: 367 IWRNNFFSNKEKI 379
|
|
| UNIPROTKB|Q9KSY4 VC_1122 "Cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 4.6e-23, P = 4.6e-23
Identities = 80/282 (28%), Positives = 138/282 (48%)
Query: 57 LLQFAHSLREMPIAIQTDKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDA 113
L +F H L+ I D+AK+ QHY+L ++L L + YS F+ +LE A
Sbjct: 144 LNRFTHWLKRNTI----DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQA 199
Query: 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 173
++A ++ CE+ +L+ VL++G GWG++++Y+AQ Y CK+T S+ Q + +++
Sbjct: 200 QQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKI 258
Query: 174 RVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLF 230
L L N + ++ D + YD++ SIEM E + K Y L + +K +
Sbjct: 259 TALGLNNQITLLKQDYRL--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMA 316
Query: 231 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHY 288
+ Y +N+ D+I KY F GG +PS ++L +V L + G Y
Sbjct: 317 IQAITIADQRYE-SYSNNVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDY 375
Query: 289 AQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFF 330
A T + W R + L ++ + G D+ ++ WR +F
Sbjct: 376 ALTLQHWRDRFEQQLPKVRDL-----GYDE--RFIRMWRYYF 410
|
|
| TIGR_CMR|VC_1122 VC_1122 "cyclopropane-fatty-acyl-phospholipid synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 4.6e-23, P = 4.6e-23
Identities = 80/282 (28%), Positives = 138/282 (48%)
Query: 57 LLQFAHSLREMPIAIQTDKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDA 113
L +F H L+ I D+AK+ QHY+L ++L L + YS F+ +LE A
Sbjct: 144 LNRFTHWLKRNTI----DQAKDNIHQHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQA 199
Query: 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 173
++A ++ CE+ +L+ VL++G GWG++++Y+AQ Y CK+T S+ Q + +++
Sbjct: 200 QQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHYG-CKVTTTTISEEQYAYAQQKI 258
Query: 174 RVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHM-KNY-QNLLKKISKWMKEDTLLF 230
L L N + ++ D + YD++ SIEM E + K Y L + +K +
Sbjct: 259 TALGLNNQITLLKQDYRL--LSGQYDKLVSIEMIEAVGKAYLPTFLSQCYALLKPRGKMA 316
Query: 231 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDD-VSVVDHWLVN-GKHY 288
+ Y +N+ D+I KY F GG +PS ++L +V L + G Y
Sbjct: 317 IQAITIADQRYE-SYSNNVDFIQKYIFPGGFLPSISVLTELATKRTGLVLRNLHDIGIDY 375
Query: 289 AQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFF 330
A T + W R + L ++ + G D+ ++ WR +F
Sbjct: 376 ALTLQHWRDRFEQQLPKVRDL-----GYDE--RFIRMWRYYF 410
|
|
| TIGR_CMR|BA_3460 BA_3460 "cyclopropane-fatty-acyl-phospholipid synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 75/280 (26%), Positives = 133/280 (47%)
Query: 80 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCG 139
HY++ F+KL L + YSC YF + +L A+ + ++ L+ G T+LD+GCG
Sbjct: 115 HYDIGNDFYKLWLDETMTYSCAYFQNEQDSLTTAQHNKVNHILKKLNLQKGDTLLDIGCG 174
Query: 140 WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYD 198
WG L A++Y K G+ S+ Q E+ + L + VE+ + D + + +D
Sbjct: 175 WGELITAAAKQYG-VKAMGVTLSEEQYAKASERIKQEGLTDLVEVSLLDYRDIKNQ-KFD 232
Query: 199 RIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF 256
+I S+ M EH+ N + ++ + + + +H C + A + TN WI KY
Sbjct: 233 KIVSVGMIEHVGKDNITQYFETVNTLLNDGGISLLH--CITSPA-NGGATNG--WIEKYI 287
Query: 257 FTGGTMPSANLLL--YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTY 314
F GG +P+ N L+ + +VD + +HY +T + W + +N + ++
Sbjct: 288 FPGGYVPAVNELITNMTNEQFFIVDVESLR-RHYGKTLQHWARNFENVMEEVRKT----- 341
Query: 315 GKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
KD+ ++ WR + A A F N + + F+F K
Sbjct: 342 -KDE--RFIRMWRLYLNACAASFFTGNID---LHQFVFTK 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5C9L6 | CNMT_THLFG | 2, ., 1, ., 1, ., 1, 4, 0 | 0.5264 | 0.9943 | 0.9833 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.79 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 357 | |||
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 1e-68 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 2e-43 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 3e-39 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-14 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-13 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-11 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 5e-10 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 9e-10 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 3e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-09 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 1e-08 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 6e-07 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 7e-07 | |
| PRK08287 | 187 | PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth | 4e-06 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 8e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 8e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-05 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 2e-05 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 3e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 3e-05 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 6e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-04 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 3e-04 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-04 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 3e-04 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 5e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 6e-04 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 6e-04 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 7e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 8e-04 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 8e-04 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 0.002 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 1e-68
Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 19/287 (6%)
Query: 67 MPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR 126
+ + + HY+L F++L L YSC YF D TLE+A++A L+L E+
Sbjct: 10 RHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLG 69
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 185
L+ G T+LD+GCGWG L++Y A++Y + G+ S+ Q + E++ L+ NVE+ +
Sbjct: 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128
Query: 186 ADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 243
D F E +DRI S+ MFEH+ +NY + KK+ +K + +H
Sbjct: 129 QDYRDF--EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI----TGPDQ 182
Query: 244 EDTNDDDWITKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 302
E D+I KY F GG +PS + +L + VV HYA+T W +R + N
Sbjct: 183 EFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEAN 242
Query: 303 LASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 349
+ + + + W + A A F + + T
Sbjct: 243 RDEAIALYDERFYR--------MWELYLAACAAAFRAGYIDVFQFTL 281
|
Length = 283 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-43
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 14/232 (6%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
++HY+L F+ +L +YSC Y+ DA TLE+A++A L+L C + +L+ G VLD+G
Sbjct: 117 KEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-TLEEAQEAKLDLICRKLQLKPGMRVLDIG 175
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG L+ Y A+ Y + G+ S Q++ +E+C L VEI + D ++ +
Sbjct: 176 CGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLP---VEIRLQDYR--DLNGQF 229
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
DRI S+ MFEH+ KNY+ + + + +K D L +H T + DTN D WI KY
Sbjct: 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH-----TIGSNKTDTNVDPWINKY 284
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 307
F G +PS + + + V++ W G Y +T W + + +
Sbjct: 285 IFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELA 336
|
Length = 383 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-39
Identities = 83/290 (28%), Positives = 134/290 (46%), Gaps = 31/290 (10%)
Query: 62 HSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELY 121
H R IQ HY+L FF L L YSC YF TLE+A++A L+L
Sbjct: 1 HKKRRDFENIQ------AHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLI 54
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN- 180
++ L+ G T+LD+GCGWG L A++Y + + G+ SK Q + ++ LQ
Sbjct: 55 LDKLGLKPGMTLLDIGCGWGGLMRRAAERY-DVNVVGLTLSKNQYKHARQRVAAEGLQRK 113
Query: 181 VEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238
VE+++ D F+ +DRI S+ MFEH+ +NY KK+ + L+ + H
Sbjct: 114 VEVLLQDYRDFDEP--FDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLL----HTI 167
Query: 239 FAYHFEDTNDDD----WITKYFFTGGTMPSANLLL-YFQDDVSVVDHWLVNGKHYAQTSE 293
H ++T++ +I KY F GG +PS ++++ + V+ HYA+T +
Sbjct: 168 TGLHPDETSERGLPLKFIDKYIFPGGELPSISMIVESSSEAGFTVEDVESLRPHYAKTLD 227
Query: 294 EWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELF--GYNN 341
W + + N + ++ W +Y A F GY +
Sbjct: 228 LWAENLQANKDEAIAL----QSEEFYRMWMLYLT----GCAVAFRIGYID 269
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-14
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188
G VLD+GCG GSL++ +A+ + ++TG+ S E E ++ + + D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 189 ST-FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234
++ +D ++ + + LL ++ +K L ++
Sbjct: 61 PDALDLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-13
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185
L+ G VLD+GCG G L+ +A+K ++ GI S+ E +E + L +NVE I
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 186 ADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH-KTFA 240
DI + S+D + S E+ H+ + +L++I + +K +L V
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 241 YHFEDTN 247
ED
Sbjct: 121 ALLEDLE 127
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-11
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191
VLD+GCG G+L+L +A ++TG+ S E + L NVE++ D
Sbjct: 1 RVLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 192 EMEA--SYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHF 234
EA S+D I S H +++ L++ + +K +L +
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-10
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLELQNVEIIVADIST 190
LD+GCG G+L + + + TG+ S E E+ +L+ V + V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 191 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 229
+ S+D + + + H+ + + +L+ + + +K +L
Sbjct: 61 LD-PGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-10
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 111 EDAEKAMLELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 169
E+ + L RL+ G VLD+GCG G L + ++ +TG+ S
Sbjct: 3 RQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRER--GFDVTGVDPSPAAVLIF 60
Query: 170 EEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 229
YD I + E+ EH+ + LL+++ + +K +L
Sbjct: 61 SLFDAPDPAVL-------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107
Query: 230 FVHHFCHKTFAYHFED 245
+ A F +
Sbjct: 108 LISTPLADDDARLFAN 123
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTF 191
VLD GCG+GS + +A+++ + ++ G S Q E E+ R L LQ + I D +
Sbjct: 3 VLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD 62
Query: 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 229
+YD ++ E+ H+K+ +L IS+ +K+ L
Sbjct: 63 PFPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHL 100
|
Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-09
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--F 191
LDVGCG G L+ +A++ ++TG+ S E + R + + +V D F
Sbjct: 1 LDVGCGTGLLAEALARRG-GARVTGVDLSP---EMLA-LAR--KRAPRKFVVGDAEDLPF 53
Query: 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
+ S+D + S + H+ + + L++I++ +K L +
Sbjct: 54 P-DESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185
RL G + D+G G GS+++ A+ N ++ I + + IE R + N+ I+
Sbjct: 16 RLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVE 75
Query: 186 AD 187
D
Sbjct: 76 GD 77
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185
R G + D+G G GS+++ A + ++ I + E IE + N+E++
Sbjct: 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE 90
Query: 186 ADIS-TFEMEASYDRIY 201
D S D I+
Sbjct: 91 GDAPEALPDLPSPDAIF 107
|
Length = 187 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV 185
L+ G VLDVGCG G Y+A+ + + + GI S F E R + + +VE V
Sbjct: 264 LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALE--RAIGRKCSVEFEV 320
Query: 186 ADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235
AD + + S+D IYS + H+++ L + KW+K + + +C
Sbjct: 321 ADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371
|
Length = 475 |
| >gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ L ++DVG G GS+S+ A ++ + ++T I + I+E + N++
Sbjct: 25 SKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID 84
Query: 183 IIVADISTFEMEASYDRIY 201
II + E+ D I+
Sbjct: 85 IIPG-EAPIELPGKADAIF 102
|
Length = 187 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ----KEFIEEQ--CRVLELQNVEIIV 185
++DVGCG G S Y+A+KY + GI S Q Q + Q V
Sbjct: 121 RIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLSDKVSFQ-----V 174
Query: 186 AD--ISTFEMEASYDRIYSIEMFEHM 209
AD FE + +D ++S+E EHM
Sbjct: 175 ADALNQPFE-DGQFDLVWSMESGEHM 199
|
Length = 340 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 181
++ G VLDV CG G ++L +A+ ++ G+ S++ E E+ + +QNV
Sbjct: 44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNV 103
Query: 182 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 219
E +V D F + S+D + ++ + LK++
Sbjct: 104 EFVVGDAENLPFP-DNSFDAVTISFGLRNVTDIDKALKEM 142
|
Length = 238 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQN 180
R L G VLDVGCG G LS +A+ +TGI S ++ IE + LE
Sbjct: 53 RLRFDLP-GLRVLDVGCGGGILSEPLARL--GASVTGIDAS---EKPIEVAKLHALE-SG 105
Query: 181 VEIIVADISTFEMEA---SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
V I + ++ + +D + +E+ EH+ + ++ L+ +K +K +LF+
Sbjct: 106 VNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI- 188
G VLD+GCG+G L +A++ + ++T + + E L+N E+ +D+
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91
Query: 189 STFEMEASYDRIYS 202
S E +D I S
Sbjct: 92 SAVE-PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186
+ G VLD+GCG+G L L +A+K K+T + + E + ++N E+ +
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 187 DISTFEMEASYDRIYS 202
++ +E +D I S
Sbjct: 216 NLYE-PVEGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 29/127 (22%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVAD 187
+LD+G G G+L L +AQ+ KI G+ + Q+E E R + L + +++I AD
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGV---EIQEEAAEMAQRNVALNPLEERIQVIEAD 103
Query: 188 I---------STFEM------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 226
I ++F++ + + + +I E + ++L++ +K +K
Sbjct: 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163
Query: 227 -TLLFVH 232
L FVH
Sbjct: 164 GRLAFVH 170
|
Length = 248 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRV 175
M+ + E L+ G VL++G G G + +A+ + + I E E + R
Sbjct: 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 176 LELQNVEIIVAD-ISTFEMEASYDRIY 201
L L NV +IV D +E A YDRIY
Sbjct: 125 LGLDNVIVIVGDGTQGWEPLAPYDRIY 151
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185
++ G VLDVGCG G+ + +A++ ++ GI S+ +E+ NVE +
Sbjct: 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75
Query: 186 ADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKI 219
D S+D + S + +H+++ L +I
Sbjct: 76 GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEI 110
|
Length = 241 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEII 184
DG V+D+G G G + +A K+T + N K + F+ E L L NVEI+
Sbjct: 39 EYLDGKRVIDIGSGAGFPGIPLAIARPELKLTLLESNHK-KVAFLREVKAELGLNNVEIV 97
Query: 185 VADISTFEMEASYDRIYS------IEMFEHMKNYQNLLKKISKWM 223
F+ E +D I S + E NLLK ++
Sbjct: 98 NGRAEDFQHEEQFDIITSRALASLNVLLELT---LNLLKVGGYFL 139
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 26/123 (21%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------QNV 181
G VLD G G G+ L A+ + ++ G+ E E + V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGV-------ELDPEAAALARRRLALAGLAPRV 53
Query: 182 EIIVADISTFE--MEASYDRI-----YSIEMFEHMKN---YQNLLKKISKWMKED-TLLF 230
++V D + S+D + Y + N Y L + +K L+
Sbjct: 54 RVVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 231 VHH 233
+
Sbjct: 114 ITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 117 MLELYCERSRLEDGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 173
M+ + CE L++G VL++G G G ++ I K + K+ I E ++
Sbjct: 64 MVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK--SGKVVTIERIPELAEKAKKTL 121
Query: 174 RVLELQNVEIIVADIST-FEMEASYDRIY 201
+ L NVE+IV D + +E A YDRIY
Sbjct: 122 KKLGYDNVEVIVGDGTLGYEENAPYDRIY 150
|
Length = 212 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176
M+ + L+ G VL++G G G + +A+ ++ I + E L
Sbjct: 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL 117
Query: 177 ELQNVEIIVADIST-FEMEASYDRIY 201
+NV + D S + EA YDRI
Sbjct: 118 GYENVTVRHGDGSKGWPEEAPYDRII 143
|
Length = 209 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI----CNSKTQKEFIEEQCRVLE 177
+ + G VLDVGCG G LS +A+ +N +TGI N + K ++
Sbjct: 38 RKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN--VTGIDASEENIEVAKLHAKKD----P 91
Query: 178 LQNVEIIVADISTF--EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
L +E + + S+D + +E+ EH+ + Q ++ ++ +K +LF
Sbjct: 92 LLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFF 147
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 27/188 (14%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185
L + VLD+G G G YI +KY ++ IC +K + R + +E
Sbjct: 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC----EKMVNIAKLRNSDKNKIEFEA 105
Query: 186 ADISTFEM-EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 242
DI + E ++D IYS + H+ + + L +K KW+K + +L + +C A
Sbjct: 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC----ADK 161
Query: 243 FEDTNDD--DWITKYFFT-------GGTMPSANLLLYFQDDVSVVDHWL----VNGKHYA 289
E+ +++ +I K +T G + S N D+S D+WL V K
Sbjct: 162 IENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS--DYWLELLQVELKKLE 219
Query: 290 QTSEEWLK 297
+ EE+LK
Sbjct: 220 EKKEEFLK 227
|
Length = 263 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRV 175
M + E L+ G VL++G G G L+ A+ + I + E
Sbjct: 61 MHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120
Query: 176 LELQNVEIIVAD-ISTFEMEASYDRIY 201
L L+NV ++V D + A YD I+
Sbjct: 121 LGLENVIVVVGDGRQGWPEFAPYDAIH 147
|
Length = 210 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 192
V DVG G G + +A + + K+T + + + F+EE + L L+NV I+ A ++
Sbjct: 52 VADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ 111
Query: 193 MEASYDRIYS--IEMFEHMKNY-QNLLKKISKWM 223
E YD I S + + + LLK ++
Sbjct: 112 HEEQYDVITSRAVASLNELTEWALPLLKPGGYFL 145
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 192
V+D+GCG G+ + +A+++ + ITGI +S + + + L + AD+ T++
Sbjct: 34 VVDLGCGPGNSTELLARRWPDAVITGIDSS---PAMLAKAAQ--RLPDATFEEADLRTWK 88
Query: 193 MEASYDRIYSIEMF----EHMKNYQNLL 216
E D +++ + +H + L+
Sbjct: 89 PEQPTDLLFANAVLQWLPDHPELLPRLV 116
|
Length = 257 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 103 FSDASKTLED-------AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 155
F+ A+KT + K +L L E+ VLD+GCG G L+ + +++ +
Sbjct: 2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPAS-VLDIGCGTGYLTRALLKRFPQAE 60
Query: 156 ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQN 214
S Q + +NV+ I D + ++S+D I S + +
Sbjct: 61 FIANDISAGM----LAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQ 116
Query: 215 LLKKISKWMKEDTLLFVHHFCHKTF 239
L ++++ +K LL F T
Sbjct: 117 ALSELARVLKPGGLLAFSTFGPGTL 141
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 100.0 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 100.0 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.89 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.89 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.88 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.88 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.88 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.88 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.87 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.86 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.85 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.83 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.83 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.82 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.82 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.81 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.8 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.78 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.78 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.78 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.76 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.76 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.75 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.74 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.74 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.74 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.73 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.72 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.71 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.7 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.7 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.69 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.68 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.68 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.67 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.67 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.67 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.66 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.66 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.66 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.65 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.65 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.65 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.65 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.64 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.64 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.63 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.62 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.61 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.61 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.61 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.61 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.61 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.6 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.6 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.6 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.6 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.59 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.59 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.57 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.57 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.57 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.56 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.56 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.56 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.54 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.54 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.53 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.53 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.53 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.52 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.52 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.52 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.52 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.5 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.5 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.49 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.49 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.48 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.48 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.48 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.48 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.47 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.47 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.46 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.46 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.46 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.45 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.45 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.44 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.42 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.41 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.4 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.4 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.4 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.38 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.37 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.37 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.36 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.36 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.36 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.34 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.34 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.34 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.34 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.33 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.33 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.32 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.32 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.3 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.29 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.29 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.26 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.26 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.23 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.23 | |
| PLN02476 | 278 | O-methyltransferase | 99.23 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.2 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.2 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.2 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.18 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.18 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.17 | |
| PLN02366 | 308 | spermidine synthase | 99.16 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.16 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.15 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.14 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.14 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.14 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.14 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.12 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.12 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 99.12 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.12 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.11 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.11 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.11 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.11 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.1 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.09 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.08 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.08 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.04 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 99.03 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.01 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.01 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.99 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.98 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.98 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.98 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.98 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.96 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.96 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.96 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.95 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.95 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.94 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.93 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.92 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.88 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.88 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.87 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.86 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.85 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.84 | |
| PLN02823 | 336 | spermine synthase | 98.83 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.83 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.8 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.79 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.78 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.78 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.78 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.74 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.73 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.73 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.71 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.7 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.69 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.68 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.67 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.66 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.65 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.64 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.62 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.61 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.61 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.6 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.57 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.56 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.54 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.41 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.41 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.39 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.38 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.38 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.38 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.34 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.33 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.33 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.28 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.26 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.26 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.25 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.23 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.19 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.18 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.18 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.18 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.17 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.14 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.14 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.13 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.12 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.11 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.98 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.93 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.88 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.87 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.85 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.84 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.77 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.74 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.65 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.63 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.61 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.52 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.52 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.42 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.41 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.41 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.34 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.3 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.3 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.27 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.19 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.18 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.07 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.97 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.96 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.91 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.77 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.66 | |
| PHA01634 | 156 | hypothetical protein | 96.53 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.47 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.29 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.21 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.19 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.04 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.02 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 95.99 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.95 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.85 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.81 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.8 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.79 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.77 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.73 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.66 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.63 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.61 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.57 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.53 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.45 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.26 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.22 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.17 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.1 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.06 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 95.04 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 94.93 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.74 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 94.66 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.49 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.43 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 94.42 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.38 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.37 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.16 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.05 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.96 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.92 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.66 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.54 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.53 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.5 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.45 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.26 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.16 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.13 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.12 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.02 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.02 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.99 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.8 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 92.7 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.33 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 92.31 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.18 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.16 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.01 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.95 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.92 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 91.74 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 91.68 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 91.64 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.43 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.35 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.33 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.31 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 91.24 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 91.24 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 90.86 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 90.75 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 90.73 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 90.63 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 90.57 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.36 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.31 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 90.23 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 90.1 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 90.05 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 89.98 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 89.91 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.75 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.66 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 89.66 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 89.62 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.44 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.42 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 89.15 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 88.9 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 88.87 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 88.72 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 88.71 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.5 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 88.31 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 88.27 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 88.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.06 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 88.04 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 87.92 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 87.82 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.65 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.57 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 87.53 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.37 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 87.2 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.13 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.08 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 87.05 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 86.76 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.74 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 86.73 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.56 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.55 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 86.32 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.3 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 86.25 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 86.24 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 86.18 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 86.18 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 86.06 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 86.05 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 86.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 85.94 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 85.8 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 85.7 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 85.7 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 85.69 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 85.57 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 85.5 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.4 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.27 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 85.18 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 85.01 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 84.99 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.91 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 84.82 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 84.66 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 84.66 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.58 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.29 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 84.23 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 83.99 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 83.75 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 83.55 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 83.48 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 83.42 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 83.29 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 83.22 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 83.18 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 82.95 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 82.9 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 82.74 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 82.7 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 82.48 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.48 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.45 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.43 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 82.26 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 82.25 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 82.22 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 82.14 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 82.14 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 82.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.94 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 81.93 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 81.91 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.88 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 81.62 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 81.48 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 81.09 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 81.02 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 80.83 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 80.76 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 80.7 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 80.52 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 80.31 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 80.28 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 80.25 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 80.16 |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=328.35 Aligned_cols=264 Identities=33% Similarity=0.614 Sum_probs=238.3
Q ss_pred chhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC
Q 018346 73 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 152 (357)
Q Consensus 73 ~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p 152 (357)
..+.++.|||+++++|+.+++|++.|+|++|.++..++.++|..+++.+++++.+++|.+|||||||+|.+++++|+++
T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y- 94 (283)
T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY- 94 (283)
T ss_pred hhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-
Confidence 3445689999999999999999999999999998889999999999999999999999999999999999999999998
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceE
Q 018346 153 NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 153 ~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l 229 (357)
+++|+|+++|+++.+.++++++..|+. +|++...|..++. ++||.|+|..+++|+ .+++.+++.+.++|+|||.+
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 899999999999999999999999996 8999999999875 559999999999999 55999999999999999999
Q ss_pred EEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hcCCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHH
Q 018346 230 FVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKP 308 (357)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~ 308 (357)
++.+++.+..+.. ....|+.+|+||+|.+|+...+.. ..+....+..|...+.||.+|++.|.++|+++..++..
T Consensus 173 llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~ 248 (283)
T COG2230 173 LLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIA 248 (283)
T ss_pred EEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776553 368899999999999999888877 45555667778888999999999999999999999888
Q ss_pred HHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 309 IMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
+ +++ .++++|+.|+.+|+.+|+.|..+ +.|++++|
T Consensus 249 ~----~~e----~~~r~w~~yl~~~~~~Fr~~~~~---~~q~~~~k 283 (283)
T COG2230 249 L----YDE----RFYRMWELYLAACAAAFRAGYID---VFQFTLTK 283 (283)
T ss_pred H----hhH----HHHHHHHHHHHHHHHHhccCCce---EEEEEeeC
Confidence 6 443 68999999999999999999966 55566554
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=332.06 Aligned_cols=261 Identities=36% Similarity=0.708 Sum_probs=206.3
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.++.|||++++||+.+|+++|+|||++|..+..+++++|.++++.+++++++++|.+|||||||+|.+++.+++++ ++
T Consensus 8 ~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~ 86 (273)
T PF02353_consen 8 ENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GC 86 (273)
T ss_dssp HHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---
T ss_pred HHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-Cc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEE
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+|+|+++|+++.+.++++++..|+. ++++...|..+++ .+||.|+|..+++|+ .+++.+++++.++|||||++++
T Consensus 87 ~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 87 HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999999999999984 8999999998765 489999999999999 6889999999999999999999
Q ss_pred EeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hcC-CcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHH
Q 018346 232 HHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQD-DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 309 (357)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~-~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~ 309 (357)
..++....+.........+|+.+++||+|.+|+...+.. ..+ ++. +..|...|.||.+|++.|+++|.++..++.++
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~-v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~ 243 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLE-VEDVENLGRHYARTLRAWRENFDANREEIIAL 243 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-E-EEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEE-EEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887765443323345999999999999999887777 443 455 56788889999999999999999999998775
Q ss_pred HHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 018346 310 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMV 347 (357)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 347 (357)
|++ .++++|++|+.+|+++|..|+.+.+|+
T Consensus 244 ----~~~----~f~r~w~~yl~~~~~~F~~g~~~~~Q~ 273 (273)
T PF02353_consen 244 ----FDE----EFYRMWRYYLAYCAAGFRAGSIDVFQI 273 (273)
T ss_dssp ----SHH----HHHHHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ----cCH----HHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence 554 689999999999999999999665543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=294.42 Aligned_cols=258 Identities=31% Similarity=0.665 Sum_probs=224.1
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.+..|||.++++|..++++.|+|+|++|.. ..++.+++..++..+++.+.+.++.+|||||||+|.++..+++.+ ++
T Consensus 114 ~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~ 191 (383)
T PRK11705 114 IVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GV 191 (383)
T ss_pred HhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CC
Confidence 3456999999999999999999999999964 578999999999999999999999999999999999999999876 78
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEE
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+|+|+++++.|++++. +. ++++...|..++ +++||.|++..+++|+ .++..+++++.++|||||.+++.
T Consensus 192 ~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999999999999874 34 588888888765 3689999999999998 45688999999999999999998
Q ss_pred eccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHhhcCCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHh
Q 018346 233 HFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMES 312 (357)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~ 312 (357)
.++...... ....|+.+|+||++.+|+...+....++...+..|...+.||.+|+..|.+++.++..++.+
T Consensus 267 ~i~~~~~~~-----~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~---- 337 (383)
T PRK11705 267 TIGSNKTDT-----NVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD---- 337 (383)
T ss_pred EccCCCCCC-----CCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 876554321 24679999999999999988877766555567788889999999999999999998887754
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 018346 313 TYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355 (357)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 355 (357)
.||+ .++++|++|+.+|+.+|+.|. .++.|++++|+
T Consensus 338 ~~~~----~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 NYSE----RFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred hCCH----HHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 5775 689999999999999999999 55888899984
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=185.10 Aligned_cols=162 Identities=22% Similarity=0.408 Sum_probs=143.2
Q ss_pred hhhhhhhcCCChHHHHHhhcCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCcccHHHHH
Q 018346 74 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSLY 146 (357)
Q Consensus 74 ~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~--~~~l~~~~~~~l~~l~~~~~~-----~~~~~vLDiGcG~G~~~~~ 146 (357)
...+..|||...++|+.++++.++ .++|..+ .....+++..+++.+++.+++ .++.+|||||||+|..+..
T Consensus 58 ~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 58 KEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred HHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 345579999999999999998765 4788764 467888999999999998877 6788999999999999999
Q ss_pred HHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcc
Q 018346 147 IAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224 (357)
Q Consensus 147 la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk 224 (357)
+++.+ +++|+|+|+|+.+++.+++++...++ ++++|+.+|+.+.+++ ++||+|++..+++|+++...+++++.++||
T Consensus 136 La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLk 214 (340)
T PLN02244 136 LARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAA 214 (340)
T ss_pred HHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcC
Confidence 99887 78999999999999999999888877 4799999999887765 789999999999999999999999999999
Q ss_pred cCceEEEEeccCCC
Q 018346 225 EDTLLFVHHFCHKT 238 (357)
Q Consensus 225 pgG~l~~~~~~~~~ 238 (357)
|||.+++.+++...
T Consensus 215 pGG~lvi~~~~~~~ 228 (340)
T PLN02244 215 PGGRIIIVTWCHRD 228 (340)
T ss_pred CCcEEEEEEecccc
Confidence 99999998876644
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=196.15 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=158.4
Q ss_pred HHhHhcCC-CCHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHH
Q 018346 17 LSSLERNL-LPDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKL 90 (357)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~ 90 (357)
..+.++|+ .|...++.++...+. ..+.....+..+++...+.++++++ +++|+||++|+ ..||+..+.+.+.
T Consensus 14 ~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~--~~F~g~~f~V~~~ 91 (506)
T PRK01544 14 DKLNKIGISSPQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGV--KEFYSREFIVNKH 91 (506)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCc--CEEcCcEEEeCCC
Confidence 33444665 356666666666654 2334445556677788899999988 99999999999 9999999999999
Q ss_pred hhcCCCCccccccCCCCCCHHHHHHHHHHHHH-----------------HHcCCCCCCEEEEECCcccHHHHHHHHHCCC
Q 018346 91 VLGKYFKYSCCYFSDASKTLEDAEKAMLELYC-----------------ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153 (357)
Q Consensus 91 ~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~-----------------~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~ 153 (357)
+|+|| ++++.+.+.....+.... ......++.+|||+|||+|.+++.++...|+
T Consensus 92 VLIPR---------peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~ 162 (506)
T PRK01544 92 VLIPR---------SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPN 162 (506)
T ss_pred cccCC---------CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCC
Confidence 99999 888888876433322100 0000113468999999999999999998888
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch-----------------------
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----------------------- 209 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~----------------------- 209 (357)
++|+++|+|+.+++.|++|+...++. +++++++|+.+....++||+|+||+++...
T Consensus 163 ~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~ 242 (506)
T PRK01544 163 ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE 242 (506)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence 99999999999999999999988874 799999998653223679999999876321
Q ss_pred ---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 210 ---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 210 ---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+..+++.+.++|+|||.+++++.
T Consensus 243 dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 243 DGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2356688889999999999998753
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=180.45 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh--ccCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL--REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
+...++.++...+. ..+.....+..++....+.++++++ +++|.||++|+ ..||+....+.+.++.|+
T Consensus 29 ~~~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~--~~f~g~~f~v~~~vlipr---- 102 (284)
T TIGR03533 29 AWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNE--AWFAGLEFYVDERVLIPR---- 102 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCC--CeecCcEEEECCCCccCC----
Confidence 45566666666653 2333445566677788899999888 37899999999 899998877777777776
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
++++.+... .+.. .+...++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++|+..++++
T Consensus 103 -----~~te~lv~~---~l~~---~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~ 171 (284)
T TIGR03533 103 -----SPIAELIED---GFAP---WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE 171 (284)
T ss_pred -----CchHHHHHH---HHHH---HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 444333322 1111 22223457999999999999999999988899999999999999999999998874
Q ss_pred -CeEEEEeccCCCccccCccEEEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 180 -NVEIIVADISTFEMEASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 180 -~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++|+.+....++||+|++|+++... ..+..+++.+.++|+|||++++++
T Consensus 172 ~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 172 DRVTLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CcEEEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 799999998653323579999999876321 224678899999999999999977
Q ss_pred cc
Q 018346 234 FC 235 (357)
Q Consensus 234 ~~ 235 (357)
..
T Consensus 252 g~ 253 (284)
T TIGR03533 252 GN 253 (284)
T ss_pred Cc
Confidence 53
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=182.11 Aligned_cols=192 Identities=16% Similarity=0.087 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-c-cCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-R-EMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
+...++.++...+. ..+.....+.+++....+.++++++ + ++|.||++|+ ..||+....+.+.++.|+
T Consensus 41 ~~~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~--~~F~g~~f~v~~~vlipr---- 114 (307)
T PRK11805 41 AWDEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNE--AWFCGLEFYVDERVLVPR---- 114 (307)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCc--ceEcCcEEEECCCCcCCC----
Confidence 45566666666654 2223344556677788899999888 4 8999999999 899998877777777766
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
++++.+... .+.. .+...+..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++|+...++.
T Consensus 115 -----~~te~lv~~---~l~~---~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~ 183 (307)
T PRK11805 115 -----SPIAELIED---GFAP---WLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE 183 (307)
T ss_pred -----CchHHHHHH---HHHH---HhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 444333322 1211 12212236899999999999999999988899999999999999999999988874
Q ss_pred -CeEEEEeccCCCccccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 180 -NVEIIVADISTFEMEASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 180 -~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++|+.+....++||+|++|+++.. +..+..+++.+.++|+|||.+++++
T Consensus 184 ~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 184 DRVTLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CcEEEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 79999999866332357999999987632 1234678999999999999999976
Q ss_pred c
Q 018346 234 F 234 (357)
Q Consensus 234 ~ 234 (357)
.
T Consensus 264 g 264 (307)
T PRK11805 264 G 264 (307)
T ss_pred C
Confidence 5
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=173.20 Aligned_cols=201 Identities=20% Similarity=0.289 Sum_probs=151.4
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
++|||||||+|..+..+++.+|+++|+|+|+|+++++.+++++...++. +++++..|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999988889999999999999999999888774 799999998765545789999999999999
Q ss_pred hhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-h-cCCcEEEEeEEecCcc
Q 018346 210 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKH 287 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~~~~~w~~~g~~ 287 (357)
++...+++++.++|||||.+++..+....... ....+.. ...++...... + ..++.+++. ...+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~------~~~~s~~~~~~~l~~~Gf~~~~~-~~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETT------SYLVTREEWAELLARNNLRVVEG-VDASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----ccccccc------cccCCHHHHHHHHHHCCCeEEEe-EECcHh
Confidence 99999999999999999999998774332110 0111111 12344443322 2 246666654 445788
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 018346 288 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 356 (357)
Q Consensus 288 y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 356 (357)
|.+++ |..++.++..++..+ .++ ..+.+.|. |+..++++|..|. ++.++++++|..
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~k~~ 204 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFR-GIANLGKLLEKGL---ASYALLIVQKDE 204 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHh-hHHHHHHHHHhch---HhhEEEEEeccc
Confidence 87766 777777766665543 343 35888996 5556656699998 789999999965
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-22 Score=186.18 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSC 100 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~ 100 (357)
|...++.++.+.+. ..+.....+.++++.+.+.++++++ +++|.||++|. ..||+....+-+..+.|+
T Consensus 163 p~~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~--~~F~G~~f~V~p~vLIPR----- 235 (423)
T PRK14966 163 PKNEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGV--REFYGRRFAVNPNVLIPR----- 235 (423)
T ss_pred hHHHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeee--eeecCcEEEeCCCccCCC-----
Confidence 44556666666554 3334455667777888899999888 99999999999 899998887777777776
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~ 180 (357)
++++.+.+ .+++.+ .++.+|||+|||+|.+++.++...|+++|+++|+|+.+++.|++|+...+. +
T Consensus 236 ----peTE~LVe-------~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-r 301 (423)
T PRK14966 236 ----PETEHLVE-------AVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-R 301 (423)
T ss_pred ----ccHHHHHH-------Hhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-c
Confidence 55444433 333332 345699999999999999999888889999999999999999999988876 8
Q ss_pred eEEEEeccCCCcc--ccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFEM--EASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++++++|+.+... .++||+|+||+|+.. +..++++++.+.+.|+|||.++++.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999876422 257999999998721 1125678888899999999998876
Q ss_pred c
Q 018346 234 F 234 (357)
Q Consensus 234 ~ 234 (357)
.
T Consensus 382 G 382 (423)
T PRK14966 382 G 382 (423)
T ss_pred C
Confidence 4
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=176.68 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=152.2
Q ss_pred HHhHhcCC--CCHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHH
Q 018346 17 LSSLERNL--LPDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFK 89 (357)
Q Consensus 17 ~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~ 89 (357)
..+.++|+ .+...++.++.+.+. ..+.....+.++++...+..+++++ +++|.+|++|. ..||+....+-.
T Consensus 12 ~~l~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~--~~f~g~~f~v~~ 89 (284)
T TIGR00536 12 SALSRAIARENPWLEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGS--KEFYGLEFFVNE 89 (284)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCc--ceEcCeEEEECC
Confidence 33434564 355566666666654 2233445556677788899999888 89999999999 899998877777
Q ss_pred HhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Q 018346 90 LVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 169 (357)
Q Consensus 90 ~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a 169 (357)
.++.|+ ++++.+.+. .+..+. ...+..+|||+|||+|.+++.++..+|+.+|+|+|+|+.+++.|
T Consensus 90 ~vliPr---------~ete~lv~~---~l~~~~---~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a 154 (284)
T TIGR00536 90 HVLIPR---------PETEELVEK---ALASLI---SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVA 154 (284)
T ss_pred CCcCCC---------CccHHHHHH---HHHHhh---hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 777777 555555443 222211 12233699999999999999999998889999999999999999
Q ss_pred HHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhc
Q 018346 170 EEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWM 223 (357)
Q Consensus 170 ~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~L 223 (357)
++|+...++. +++|+++|+.+.....+||+|++|+++.. +..+..+++.+.++|
T Consensus 155 ~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 155 EENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9999988875 59999999876322247999999986621 124678899999999
Q ss_pred ccCceEEEEecc
Q 018346 224 KEDTLLFVHHFC 235 (357)
Q Consensus 224 kpgG~l~~~~~~ 235 (357)
+|||++++++..
T Consensus 235 ~~gG~l~~e~g~ 246 (284)
T TIGR00536 235 KPNGFLVCEIGN 246 (284)
T ss_pred cCCCEEEEEECc
Confidence 999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=176.34 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=139.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHH
Q 018346 44 SGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYC 122 (357)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~ 122 (357)
.......++....+...+.++ ++.|.+|+++. ..|++....+.+.++.|+ ++++.+.+...
T Consensus 43 ~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~--~~f~gl~~~v~~~vliPr---------~dTe~Lve~~l------- 104 (280)
T COG2890 43 HPEAELSEEELERLRELLERRAEGEPVAYILGS--AEFGGLRFKVDEGVLIPR---------PDTELLVEAAL------- 104 (280)
T ss_pred ccccccCHHHHHHHHHHHHHHHCCCCHhHhhcc--CeecceeeeeCCCceecC---------CchHHHHHHHH-------
Confidence 344445667888888888888 89999999998 899999999999999998 77766665422
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
......+. +|||+|||||++++.++...|.++|+|+|+|+.+++.|++|+..+++.++.++.+|+.+.. .++||+|+|
T Consensus 105 ~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIVs 182 (280)
T COG2890 105 ALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIVS 182 (280)
T ss_pred HhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEEe
Confidence 11111222 8999999999999999999998999999999999999999999999767788888877633 358999999
Q ss_pred ccccc-------------------------chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 203 IEMFE-------------------------HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 203 ~~~~~-------------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+- ++..+.+++..+.+.|+|||.+++++-
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 99872 123368899999999999999999765
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-22 Score=168.45 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=158.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
..++..+++.+..+|.|+|||+|..+..|++++|++.++|+|.|++|++.|+.+. .+++|..+|+.++.++.+.|
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccc
Confidence 3466777888889999999999999999999999999999999999999886653 38999999999987777899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCccccc---CCccchhhhcc---cCCCCCCCHHHHHh-h
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYF---FTGGTMPSANLLLY-F 271 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~p~~~~~~~-~ 271 (357)
++++|.+++++++..+++.++...|.|||++.++.|.....+.+... .....|-...- +....+++....-. +
T Consensus 95 llfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 95 LLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999998877765432 22234444321 11335555444333 3
Q ss_pred cCCcEEEEeEEecCccH---HHHHHHH---------HHHHHhc-----HHHHHHHHHhcCC-ccchHHHHHHHHHHHHHH
Q 018346 272 QDDVSVVDHWLVNGKHY---AQTSEEW---------LKRMDNN-----LASIKPIMESTYG-KDQAVKWTVYWRTFFIAV 333 (357)
Q Consensus 272 ~~~~~~~~~w~~~g~~y---~~tl~~w---------~~~l~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 333 (357)
......++-|++.+.|- ...+-+| ++.|.+. ...+.+++.+.|+ +.+|++.++|-|.|+++.
T Consensus 175 a~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~ 254 (257)
T COG4106 175 APLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVAT 254 (257)
T ss_pred CcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEe
Confidence 34456688898876543 1233344 4444432 3456777788888 467888888888877654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=182.21 Aligned_cols=216 Identities=20% Similarity=0.339 Sum_probs=150.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
+.+++.+.+.++.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|+++....+. +++|..+|+...+++ ++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKC-SVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCC-ceEEEEcCcccCCCCCCCE
Confidence 345555566778899999999999999999876 78999999999999999988754332 799999999887654 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccC-CCCCCCHHHHHhhc--CC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYFQ--DD 274 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~--~~ 274 (357)
|+|+|..+++|++++..+++++.++|||||.+++.++....... .. ....++.. +..+++........ .|
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~-~~~~~~~~~g~~~~~~~~~~~~l~~aG 406 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SP-EFAEYIKQRGYDLHDVQAYGQMLKDAG 406 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cH-HHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999876543221 11 11222222 23445544444332 46
Q ss_pred cEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 275 VSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 275 ~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
+..+. +...+.+|.+++..|...+.++..++.. .++++........|. ...+.+..+. --|++ |+++|
T Consensus 407 F~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~----~~~~~~~~~~-~~wg~--~~a~k 474 (475)
T PLN02336 407 FDDVI-AEDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGWK----AKLVRSSSGE-QKWGL--FIAKK 474 (475)
T ss_pred Ceeee-eecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhHH----HHHhhhcCCc-eeeEE--EEEec
Confidence 66664 3445678999999999988877666644 466543333333343 2333344433 22554 44666
Q ss_pred c
Q 018346 355 K 355 (357)
Q Consensus 355 ~ 355 (357)
+
T Consensus 475 ~ 475 (475)
T PLN02336 475 K 475 (475)
T ss_pred C
Confidence 4
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=164.93 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=109.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
.+++.....+|.+|||+|||||.++..+++..+.++|+|+|+|+.|++.|++++...+..+++|+++|++++|++ ++||
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 345555666899999999999999999999987789999999999999999999988776799999999999988 8999
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|.+...++++++++++|+++.|+|||||++++..+..+..
T Consensus 122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 99999999999999999999999999999999988877643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=158.64 Aligned_cols=235 Identities=17% Similarity=0.299 Sum_probs=155.2
Q ss_pred CChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCC
Q 018346 83 LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 162 (357)
Q Consensus 83 ~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s 162 (357)
.+-..|+..++... +.++. +. ....+++.+.+.++.+|||||||+|..+..+++.+ +++|+|+|+|
T Consensus 19 ~~~~~~e~~~g~~~------~~~gg--~~-----~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s 84 (263)
T PTZ00098 19 EGIKAYEFIFGEDY------ISSGG--IE-----ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDIC 84 (263)
T ss_pred ccchhHHHHhCCCC------CCCCc--hH-----HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECC
Confidence 34567888888642 22221 11 23456677788899999999999999999998765 6899999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 163 KTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 163 ~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.+++.|+++... .+++.+..+|+.+.+++ ++||+|++..+++|++ +...+++++.++|||||.+++..+.....
T Consensus 85 ~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~ 162 (263)
T PTZ00098 85 EKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI 162 (263)
T ss_pred HHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 9999999987654 23799999999876655 7899999999888874 78999999999999999999988765432
Q ss_pred CcccccCCccchhhhcccC-CCCCCCH-HHHHhhc-CCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCc
Q 018346 240 AYHFEDTNDDDWITKYFFT-GGTMPSA-NLLLYFQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGK 316 (357)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~p~~-~~~~~~~-~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~ 316 (357)
.. . ... ...++.. ...+++. .....+. .++..++.. ..+.++.+.+..-++.+.++..++ .+.+|+
T Consensus 163 ~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~-d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 231 (263)
T PTZ00098 163 EN-W----DEE-FKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK-DISDYWLELLQVELKKLEEKKEEF----LKLYSE 231 (263)
T ss_pred cC-c----HHH-HHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE-eCcHHHHHHHHHHHHHHHHhHHHH----HHhcCH
Confidence 11 0 001 1111100 1123333 3333333 467666543 334445455444445555544444 445787
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q 018346 317 DQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 349 (357)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 349 (357)
+........|....-.|.. | -+.|++-+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~----~-~~~wg~~~ 259 (263)
T PTZ00098 232 KEYNSLKDGWTRKIKDTKR----K-LQKWGYFK 259 (263)
T ss_pred HHHHHHHHHHHHHHHHhhc----c-ccccceEe
Confidence 6656666777666666553 3 35588865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=164.61 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=91.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
+++.....++.+|||+|||+|.++..+++.. |..+|+|+|+|+.|++.|+++....+..+|+++++|++++|++ ++||
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence 3344456688999999999999999999875 5689999999999999999999988877999999999999877 8899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|++...++++++..+.++++.++|||||++++..++.+..
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999999988877653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=162.93 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHh----hhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccc
Q 018346 26 PDAVIRRLSRLLLG----GRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSC 100 (357)
Q Consensus 26 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~ 100 (357)
+...++.++...+. ........+...+....+.++++++ ++.|.+|+.+. ..||+....+...++.|+
T Consensus 18 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~--~~f~~~~~~~~~~~lipr----- 90 (275)
T PRK09328 18 PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGE--AEFWGLDFKVSPGVLIPR----- 90 (275)
T ss_pred cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcee--ceEcCcEEEECCCceeCC-----
Confidence 34444445554443 2233344444566668888899888 88899999998 888887666666666665
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~ 180 (357)
++++.+.+. ++......++.+|||+|||+|.++..++...|..+|+|+|+|+.+++.|++++......+
T Consensus 91 ----~~te~l~~~-------~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~ 159 (275)
T PRK09328 91 ----PETEELVEW-------ALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGAR 159 (275)
T ss_pred ----CCcHHHHHH-------HHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCc
Confidence 444444332 333334456789999999999999999999888999999999999999999987333348
Q ss_pred eEEEEeccCCCccccCccEEEEcccccch--------------------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFEMEASYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.++.+|+.+....++||+|++++++... ..+..+++++.++|+|||.++++.
T Consensus 160 i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 160 VEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99999998764323689999999876421 235678888999999999999965
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=160.19 Aligned_cols=181 Identities=10% Similarity=0.053 Sum_probs=132.6
Q ss_pred hHhcCC-CCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCC
Q 018346 19 SLERNL-LPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYF 96 (357)
Q Consensus 19 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~ 96 (357)
+.++|+ .|...++.++.+... ...+..+++++ +++|.||++|. ..|++....+....+.|+
T Consensus 5 ~~~~g~~~~~~~a~~l~~~~~~--------------~~~~~~~~~rr~~~~Pl~yi~g~--~~f~g~~~~v~~~vf~pr- 67 (251)
T TIGR03704 5 LRAAGCVFAEDEAALLVDAART--------------PGELAAMVDRRVAGLPLEHVLGW--AEFCGLRIAVDPGVFVPR- 67 (251)
T ss_pred HHhcCCCCHHHHHHHHHHhccC--------------HHHHHHHHHHHHcCCCHHHhccc--CeEcCeEEEECCCCcCCC-
Confidence 345676 477888877777621 34577788888 99999999998 888776544444444333
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 97 KYSCCYFSDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 97 ~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
++++.+. +.++..+. ..++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++|+..
T Consensus 68 --------~~Te~Lv-------~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 68 --------RRTEFLV-------DEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred --------ccHHHHH-------HHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3333332 23333222 1234689999999999999999888888999999999999999999987
Q ss_pred cCCCCeEEEEeccCCCcc---ccCccEEEEcccccch--------------------------hhHHHHHHHHHHhcccC
Q 018346 176 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKED 226 (357)
Q Consensus 176 ~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~~--------------------------~~~~~~l~~~~~~Lkpg 226 (357)
++ ++++++|+.+... .++||+|++|+++... ..+..+++.+.++|+||
T Consensus 133 ~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 133 AG---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred cC---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 64 4789999876321 2579999999987421 11457888889999999
Q ss_pred ceEEEEec
Q 018346 227 TLLFVHHF 234 (357)
Q Consensus 227 G~l~~~~~ 234 (357)
|++++++.
T Consensus 210 G~l~l~~~ 217 (251)
T TIGR03704 210 GHLLVETS 217 (251)
T ss_pred CEEEEEEC
Confidence 99999765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=139.07 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEecc-CCCccccCccEEEEcc-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~fD~Ii~~~-~ 205 (357)
|+.+|||||||+|..+..+++..|+++|+|+|+|+.+++.|++++...+. ++++++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977899999999999999999999966555 5999999999 4444347899999999 4
Q ss_pred ccch---hhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++++ ++..++++.+.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 567889999999999999999875
|
... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-20 Score=156.25 Aligned_cols=109 Identities=27% Similarity=0.406 Sum_probs=100.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||.|.++..+|+. |+.|+|+|+|+.+++.|+..+...++ ++.+.+..++++... ++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 6899999999999999999998 79999999999999999999999988 688888888876544 7999999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
|++++..+++.|.+++||||.+++++++....+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 999999999999999999999999999865543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-19 Score=145.31 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.1
Q ss_pred CCCCEEEEECCcccHHHHHHHH-HCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~-~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..+++ ..|+.+++|+|+|+++++.|+++++..+.++++|.++|+.+++ .+++||+|+++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 3578999999999999999994 4678999999999999999999999999889999999999965 336899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++++.+...+++++.+.|+|||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
|
... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=154.50 Aligned_cols=189 Identities=19% Similarity=0.185 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccc
Q 018346 23 NLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCY 102 (357)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~ 102 (357)
|+......+..+...+..++....-.++.+.+..+. ..+ +.+..+.+++. +..+.++
T Consensus 16 Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~-------~~~---------------~~~e~~~l~~~-lti~~T~ 72 (264)
T smart00138 16 GIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLT-------SHR---------------GEEELAELLDL-MTTNETR 72 (264)
T ss_pred CCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHh-------cCC---------------cHHHHHHHHHH-hhcCCCc
Confidence 777777777788888887777666555555544332 111 11222322222 3444467
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC-----CcEEEEEcCCHHHHHHHHHHH
Q 018346 103 FSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 103 f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p-----~~~v~~vD~s~~~l~~a~~~~ 173 (357)
|.++...++......+..+++.....++.+|||+|||+|. +++.+++.+| +.+|+|+|+|+.+++.|++..
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 7777777777777777777665444566899999999996 5666666554 479999999999999999854
Q ss_pred HH----cC----------------------C-CCeEEEEeccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhc
Q 018346 174 RV----LE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWM 223 (357)
Q Consensus 174 ~~----~~----------------------~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~L 223 (357)
.. .+ + ++|+|.++|+.+.+++ ++||+|+|..+++|++ +..++++++.++|
T Consensus 153 y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L 232 (264)
T smart00138 153 YPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEAL 232 (264)
T ss_pred CCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHh
Confidence 10 00 1 2689999999987653 7899999999999994 5568999999999
Q ss_pred ccCceEEEEec
Q 018346 224 KEDTLLFVHHF 234 (357)
Q Consensus 224 kpgG~l~~~~~ 234 (357)
+|||++++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999998543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=148.13 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=140.7
Q ss_pred CCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHc
Q 018346 47 KPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS 125 (357)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~ 125 (357)
.+....+.+.+..+.+++ ++.|.||+.|+ ..|-|+.-..-+.+++|| ++++.+.+...+.+.. .
T Consensus 80 ~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~--~~F~~l~l~~~pgVlIPR---------pETEE~V~~Vid~~~~----~ 144 (328)
T KOG2904|consen 80 DPLVILQLESIRWACLQRYKRMPLQYILGS--QPFGDLDLVCKPGVLIPR---------PETEEWVEAVIDALNN----S 144 (328)
T ss_pred cccchhHHHHHHHHHHHHHhcCChhheecc--CccCCceEEecCCeeecC---------ccHHHHHHHHHHHHhh----h
Confidence 344566788888888766 99999999999 899999989999999999 8887777664443332 2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC---cc---ccCcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF---EM---EASYD 198 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~---~~---~~~fD 198 (357)
....+..|||+|||+|+++..++...|.+.|+++|.|+.++..|.+|+...++. ++.+++.+++.. +. .+++|
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 233556899999999999999999999999999999999999999999998874 777775554431 11 27899
Q ss_pred EEEEcccc--------------------------cchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMF--------------------------EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~--------------------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+++||+++ ++...+..++.-+.+.|+|||.+.++....+.
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred EEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 99999987 22334667888889999999999998775543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=141.21 Aligned_cols=130 Identities=23% Similarity=0.352 Sum_probs=103.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 018346 99 SCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178 (357)
Q Consensus 99 ~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~ 178 (357)
.++.|.+ ..++....-+++.+... ++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++..+++
T Consensus 7 ~~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 7 HPGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp ETTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred CCCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3466663 35555555455544433 57799999999999999999999888999999999999999999999998
Q ss_pred CCeEEEEeccCCCccccCccEEEEcccccchh-----hHHHHHHHHHHhcccCceEEEEec
Q 018346 179 QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 ~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++..|+.+....++||+|+||+|++.-. ....+++.+.++|||||.+++...
T Consensus 81 ~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 81 ENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 66999999998754447899999999987553 368899999999999999987554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=151.57 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHH
Q 018346 46 YKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER 124 (357)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~ 124 (357)
......++...+..+++++ .+.|.+++.+. ..+|+....+....+.++ +++ ..++..+++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~~~~~~~~~~~~p~---------~~~-------~~l~~~~l~~ 83 (251)
T TIGR03534 22 EKELTPEELARFEALLARRAKGEPVAYILGE--REFYGLDFKVSPGVLIPR---------PDT-------EELVEAALER 83 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCHHHHccc--ceEeceEEEECCCcccCC---------CCh-------HHHHHHHHHh
Confidence 3444567778888888888 78899999886 666654433222222222 111 1233334444
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
+. ..+.+|||+|||+|.++..++...|+.+++|+|+|+.+++.+++++...+++++.++.+|+.+....++||+|++++
T Consensus 84 ~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 84 LK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred cc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECC
Confidence 33 34569999999999999999998888899999999999999999999888878999999987633237899999999
Q ss_pred cccchh--------------------------hHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++.... .+..+++.+.++|+|||.+++..
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 875321 13467899999999999999864
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=151.77 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=100.8
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHH---cCCCCeEEEEeccCCCccc-cC
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
++.+.+.++.+|||+|||+|.++..+++.. |..+|+|+|+|++|++.|+++... ...++++++++|+.+++++ ++
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence 344566778999999999999999999875 567999999999999999877542 2234899999999988776 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
||+|+++.++++++++..+++++.++|||||.+++.++..+.
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999999999999999999999999999998887644
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=154.25 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
....+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|+++ +++++++|+.+++..++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~ 89 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPD 89 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCC
Confidence 34456777777788999999999999999999998889999999999999988652 67899999987654478
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.++++++++..+++++.++|||||.+++..+..
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 9999999999999999999999999999999999987653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=146.90 Aligned_cols=118 Identities=17% Similarity=0.267 Sum_probs=104.1
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.++..+.+.++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.++++....+.++++++.+|..+.+.+ ++|
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence 35556677788999999999999999999875 5689999999999999999998887777899999999887654 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|+++.++++++++..+++++.++|+|||.+++..++.+
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 9999999999999999999999999999999998776543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=143.78 Aligned_cols=110 Identities=21% Similarity=0.337 Sum_probs=94.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....+++++++...|+.+.+++++||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445556789999999999999999987 789999999999999999999888887799999999876655789999
Q ss_pred EEcccccchh--hHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+++.++++++ +...+++++.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998873 5789999999999999996554
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-18 Score=127.69 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=83.2
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchhhH
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 212 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~ 212 (357)
||+|||+|..+..+++. ++.+|+++|+|+++++.++++.... ++.+..+|+.+++++ ++||+|+++.+++++++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 7889999999999999999887654 566999999998876 899999999999999999
Q ss_pred HHHHHHHHHhcccCceEEE
Q 018346 213 QNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 213 ~~~l~~~~~~LkpgG~l~~ 231 (357)
.++++++.++|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=148.45 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
....++..+.+.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++. +++.++.+|+.++...++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQA 93 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCC
Confidence 344566677777889999999999999999999988899999999999999998763 378899999987654478
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.+++++++...+++++.++|||||.+++..+..
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 9999999999999999999999999999999999986543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=151.51 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=95.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|++++...+. .+++++++|+.+++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35679999999999999999875 78999999999999999988765544 3899999999887654 68999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++|++++..+++++.++|||||.+++.+++..
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999999999999999999988653
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=137.85 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=91.4
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+++||+|++
T Consensus 24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred HHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEE
Confidence 3344445679999999999999999986 78999999999999999999888877 58888888876554568999999
Q ss_pred cccccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+++++ ++...+++.+.++|+|||++++..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999987 457789999999999999966544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-17 Score=137.35 Aligned_cols=105 Identities=23% Similarity=0.286 Sum_probs=93.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
++++.+|||+|||+|..+..++...|+++|+++|+|+.+++.|+++++..++++++++.+|+.+.+..++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~-- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA-- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc--
Confidence 345889999999999999999988888999999999999999999999999878999999998865456899999975
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.++..+++.+.+.|+|||.+++....
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 346788999999999999999987654
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=135.59 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=88.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.++++++..++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999988888899999999999999999999888878999999998865447899999986 3
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.++..+++.+.++|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 355678888999999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-17 Score=145.69 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=101.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME 194 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~ 194 (357)
+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|+++....++ ++++++++|+.++. .+
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 445666555 45679999999999999999987 68999999999999999999988876 48999999987753 23
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++||+|++..++++++++..+++++.++|||||.+++..++..
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 7899999999999999999999999999999999998766643
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=132.42 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=92.7
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.....++.++||+|||.|..+.+||++ |..|+++|+|+.+++.+.+.+...++ .|+..+.|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 333344556789999999999999999998 89999999999999999999888888 699999999887766789999
Q ss_pred EEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++..+++++ +..+.+++.+.+.++|||++++.++.
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 999888888 55678999999999999999887654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=142.17 Aligned_cols=106 Identities=24% Similarity=0.351 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHH--CCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~--~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++. .|+++|+|+|+|+.|++.|++++...+.. +++++++|+.+.+. ..+|+|+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehhh
Confidence 46789999999999999999874 47899999999999999999999887664 79999999988764 4599999999
Q ss_pred cccchh--hHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++++++ +...+++++.+.|||||.+++...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999884 356899999999999999999764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-16 Score=123.43 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=95.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-c-cc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-EA 195 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 195 (357)
...+++.+.+.++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.+++++...+.++++++..|+.... . .+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334556666777889999999999999999999888899999999999999999998888778999999876422 1 26
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||+|++..+.. ...++++.+.+.|+|||.+++...
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 899999977654 346899999999999999998653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=142.81 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~ 193 (357)
+......+++.+...++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++.. .+.++++|+..+++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~ 99 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcC
Confidence 4445566667666556789999999999999998875 6899999999999999887642 35688999988765
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+ ++||+|+++.++++.+++..++.++.++|+|||.+++.++....
T Consensus 100 ~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 100 ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 5 68999999999999999999999999999999999999887654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-17 Score=141.57 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=92.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-C-----CeEEEEeccCCCccccCccEEEEc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~-----~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
|.+|||+|||.|-++..||+. ++.|+|+|+++++++.|++....... . ++.+.+.|++... ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 478999999999999999988 89999999999999999998544332 1 3677777777654 569999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
.+++|+.++..++..+.++|||||.+++.+.++....
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS 202 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS 202 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHH
Confidence 9999999999999999999999999999998775443
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=145.98 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=101.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL- 178 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~- 178 (357)
+++|..+ .++...+- +++.++...+.+|||+|||+|.+++.+++.+|..+|+++|+|+.+++.|++|++.++.
T Consensus 205 ~gVFs~~--~LD~Gtrl----lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378)
T PRK15001 205 ANVFSRT--GLDIGARF----FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378)
T ss_pred CCccCCC--CcChHHHH----HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 4777754 44443333 3444444445699999999999999999999999999999999999999999987764
Q ss_pred --CCeEEEEeccCCCccccCccEEEEcccccch-----hhHHHHHHHHHHhcccCceEEEEe
Q 018346 179 --QNVEIIVADISTFEMEASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 179 --~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+++++..|..+...+.+||+|+||++++.. ....++++.+.++|+|||.+++..
T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3689999998653323589999999999754 234678999999999999999985
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=134.06 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=105.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC------cEEEEEcCCHHHHHHHHHHHHHcCCC---CeEEEEeccCCC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLELQ---NVEIIVADISTF 191 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~------~~v~~vD~s~~~l~~a~~~~~~~~~~---~v~~~~~d~~~~ 191 (357)
.+.+++..++.++||++||||.++..+.++.+. .+|+++|+||.|++.+++++.+.++. ++.|+.+|++++
T Consensus 92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 455667778899999999999999999988755 79999999999999999999887762 489999999999
Q ss_pred ccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 192 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 192 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|++ ++||...+...+.++.++.+.+++++|+|||||++.+-.++...
T Consensus 172 pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 988 89999999999999999999999999999999999988776654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=138.08 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~ 195 (357)
+...++..+...++.+|||+|||+|.++..++...+ ..|+|+|+|+.++..++......+ ..++.+...++.+++...
T Consensus 109 ~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 109 KWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 344566666666789999999999999999887743 479999999999877544322222 237888889988876556
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+|+.+++|++++..++++++++|||||.+++++...
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 89999999999999999999999999999999999987643
|
Known examples to date are restricted to the proteobacteria. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=138.56 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+.....+++||+|+++.++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4569999999999999999986 78999999999999999999998888 89999999877555578999999999988
Q ss_pred h--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 209 M--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 209 ~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ++...+++++.++|+|||++++..+
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7 3678899999999999999776543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-17 Score=127.90 Aligned_cols=96 Identities=24% Similarity=0.394 Sum_probs=68.1
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcccccchh
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMK 210 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~~~ 210 (357)
||+|||+|.++..+++.+|..+++|+|+|+.+++.++++....+..+......+..+.. ..++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999999989999999999999999999888876545455554444422 125899999999999999
Q ss_pred hHHHHHHHHHHhcccCceE
Q 018346 211 NYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l 229 (357)
+...+++++.++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=139.98 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=97.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~ 203 (357)
.+.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|+++....+.++++++.+|+.+++.+ ++||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 45688999999999999888777664 4568999999999999999999888888999999999887654 689999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.++++.++...+++++.++|||||++++....
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999999999999999999999999997654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=141.79 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~f 197 (357)
..+...++..++.+|||||||+|.++..++...+ ..|+|+|+|+.++..++......+. .++.++.+|+.+++..++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3445555545678999999999999999998853 4699999999998765544333322 3799999999887766789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|+|..+++|..++..+++++.+.|+|||.+++++..
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 99999999999999999999999999999999998654
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=121.03 Aligned_cols=94 Identities=19% Similarity=0.434 Sum_probs=79.7
Q ss_pred EEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc-cccc
Q 018346 133 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 207 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~-~~~~ 207 (357)
|||+|||+|..+..+++.+ |..+++|+|+|+++++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999886 447999999999999999999988777 899999999987654 789999995 4588
Q ss_pred ch--hhHHHHHHHHHHhcccCc
Q 018346 208 HM--KNYQNLLKKISKWMKEDT 227 (357)
Q Consensus 208 ~~--~~~~~~l~~~~~~LkpgG 227 (357)
|+ +....+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 88 457889999999999998
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=142.75 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
+++...+ .++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.|+++... .+++++.+|+.+.+++ ++||
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFD 180 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYAD 180 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCcee
Confidence 4444444 357899999999999999999887778999999999999999887642 3788999999887655 6899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|+++.+++++++...+++++.++|||||.+++..+.
T Consensus 181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999999999999999999999999886543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=134.34 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=104.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 97 KYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 97 ~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.-.++.|+.+.-.. ..+ .+++.++...+.+|||+|||.|.+++.+++..|..+++.+|+|..+++.|++|+..+
T Consensus 132 ~t~pGVFS~~~lD~--GS~----lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 132 KTLPGVFSRDKLDK--GSR----LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred EeCCCCCcCCCcCh--HHH----HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 34568888654333 322 345555665566999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccccCccEEEEcccccchh-h----HHHHHHHHHHhcccCceEEEEec
Q 018346 177 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK-N----YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 177 ~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~-~----~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++++..+...|..+.. .++||+|+||+|+|.-. - -.+++....++|++||.|.+..-
T Consensus 206 ~~~~~~v~~s~~~~~v-~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 206 GVENTEVWASNLYEPV-EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCCccEEEEecccccc-cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8866567777777633 35899999999998542 2 34799999999999999999765
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=128.55 Aligned_cols=112 Identities=19% Similarity=0.262 Sum_probs=94.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccE
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 199 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 199 (357)
.++..+.+.++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...++.+++++.+|... ..+++||+
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~ 100 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADA 100 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCE
Confidence 34455666788999999999999999999988889999999999999999999988877789999998753 23467999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|++.....+ ...+++.+.+.|+|||.+++....
T Consensus 101 v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccC---HHHHHHHHHHhcCCCeEEEEEEec
Confidence 999876543 467889999999999999886543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=139.22 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
....+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++++.+++ ..+++..|.... .+++||+|+||+++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIvsNPPFH 272 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMIISNPPFH 272 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEEECCCcc
Confidence 344589999999999999999998888999999999999999999999887 567788887653 247899999999998
Q ss_pred ch-----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HM-----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. .....+++.+.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 63 4568899999999999999998654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=135.02 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=93.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
.+.+|||+|||+|..+..+++.+|..+++++|+|+.++..++++.. +++.++.+|+.+.+++ ++||+|+++.+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 4579999999999999999999888899999999999988887654 2788999999887644 7899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+..++..+++++.++|+|||.+++..+....
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 9999999999999999999999998775543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=134.92 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=93.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++.+ |+++++|+|+|+.+++.|++++...+. .+++++++|+.+.++ ..+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 467899999999999999999874 689999999999999999999887654 379999999988765 3689999999
Q ss_pred cccchh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++++++ +...+++++.++|+|||.+++..+..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999984 46789999999999999999986543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=133.09 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=100.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
+.+++...+.++.+|||+|||+|..+..++..+ |..+++|+|+|+.+++.++++.... ..++++...|+...+.. ++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCCCCC
Confidence 345566777888999999999999999999887 6789999999999999998873322 24899999998876544 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|++..+++++.++..+++++.++|||||.+++..+.
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999999999999999999999999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=142.65 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.|+++....+. ++.++++|..+++ ++ ++||+|+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence 367899999999999999999988999999999999999999988766554 7889999988765 33 7899999999
Q ss_pred cccch-------------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++|++ .+...+++++.++|||||.+++....
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 98865 35678999999999999999997653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=131.81 Aligned_cols=113 Identities=27% Similarity=0.281 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
....+++.+.+.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++...++++++++.+|..+....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 445566667788899999999999999999998853 467999999999999999999999888999999998764332
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+||+|++..+..++ .+.+.+.|+|||++++....
T Consensus 145 ~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEcC
Confidence 689999998776544 34577899999999886543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=131.02 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc-CCCc--c-ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--M-EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~~~--~-~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.|++++...+.+++.++++|+ ..++ . +++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999888889999999999999999999888877899999998 5543 3 36799999986
Q ss_pred cccchh--------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+.. ....+++++.++|||||.+++.+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 543321 14678999999999999999976543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=127.01 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++++++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCC
Confidence 356799999999999999999875 3999999999999999999988876 7899999987644 36899999999986
Q ss_pred chhh---------------------HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.++ ...+++++.++|+|||.+++...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 5532 45689999999999999999776543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=129.15 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 194 (357)
....+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++...+.. +++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 345566667777889999999999999999998763 569999999999999999999988874 699999998764333
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|+++.++++++ +++.+.|+|||++++...
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 6899999998887654 467889999999988654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=125.96 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~ 205 (357)
..++.+|||+|||.|.++..+++. +.+|+|+|+|+.+++. .++.....+...... .++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 457889999999999999999776 5699999999998876 144445544443322 378999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++|++++..+++.+.++|||||.+++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999998764
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=131.19 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=99.0
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc---cCcc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD 198 (357)
.........+|||+|||+|.+++.++++.+.+++++||+++++.+.|+++.+.+++. +|+++++|+.++... .+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 344455578999999999999999999987799999999999999999999998884 999999999986533 5699
Q ss_pred EEEEcccccch------------------hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+|+||+|+... -+.+.+++.+.++|||||.+.+..+....
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl 175 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL 175 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence 99999998432 23688999999999999999998775543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=118.98 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=102.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
..+..+.+.++.+++|||||+|.+++.++...|..+|+++|-++++++..++|+++.|.+|+.++.+|+.+.... .++|
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 356778889999999999999999999998889999999999999999999999999999999999999875333 4799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.|+.... . +...+++.+...|||||++++...+.++
T Consensus 105 aiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 105 AIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred EEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 9999887 3 5688999999999999999998776544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=117.98 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=88.8
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--c-ccCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M-EASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~ 205 (357)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.++...+. ++++++++|+.+.. . .++||+|++|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999996 58999999999999999999999887 48999999998764 2 278999999999
Q ss_pred ccch--------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+... .....+++.+.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9753 2357889999999999999998765
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=128.47 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=91.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cc-cCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~fD~Ii~~~ 204 (357)
+..+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|++++...+++|++++++|+.+++ .+ +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999999888889999999997643 22 5799999987
Q ss_pred cccchhh--------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+... ...+++.+.++|||||.+++.+...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 6544321 2578999999999999999976543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=125.41 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe
Q 018346 107 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186 (357)
Q Consensus 107 ~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~ 186 (357)
+..+.......+...+..+ .++.+|||+|||+|..+..+++..|+.+++|+|+|+.+++.|+++. +++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~ 95 (204)
T TIGR03587 23 RQSLVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQG 95 (204)
T ss_pred cHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEe
Confidence 3444444445555555443 4677999999999999999998878899999999999999998764 25778889
Q ss_pred ccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEec
Q 018346 187 DISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 187 d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+.+ +.+ ++||+|+++.+++|++ +..++++++.+++ ++.+++...
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 9887 444 7899999999999983 4678888888887 456666554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=126.64 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.|+++ ..++++|+.+++++ ++||+|+++.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999886 57999999999999998763 23578899888766 7899999999999
Q ss_pred chhhHHHHHHHHHHhcccC
Q 018346 208 HMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~Lkpg 226 (357)
+++++...++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999993
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=125.99 Aligned_cols=113 Identities=27% Similarity=0.346 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.+...+++.+.+.++.+|||||||+|..+..+++.. ++.+|+++|+++++++.+++++...+..+++++.+|......+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 355567777788899999999999999999998875 3479999999999999999999988888899999998764333
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|++......+ .+.+.+.|||||++++...
T Consensus 143 ~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEEc
Confidence 789999998776544 2456778999999988643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=127.51 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=99.6
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~f 197 (357)
++..+...++.+|||+|||+|..+..++..+| ..+++++|+|+.+++.+++++...+. .++.++.+|+.+.+.+ ++|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 122 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSF 122 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCc
Confidence 44445555778999999999999999999876 58999999999999999998876544 3789999999876544 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++.+++++++...+++.+.++|+|||.+++.....
T Consensus 123 D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 123 DAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 999999999999999999999999999999998876644
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=125.54 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=89.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc------------CCCCeEEEEeccC
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVADIS 189 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~------------~~~~v~~~~~d~~ 189 (357)
+..+...++.+|||+|||.|..+.+||++ |..|+|+|+|+.+++.+.+..... .-.+|+++++|+.
T Consensus 27 ~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 27 WPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred HHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 33333346779999999999999999987 899999999999999764322100 0126999999999
Q ss_pred CCccc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 190 TFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 190 ~~~~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.. ++||.|+...+++++ +....+++.+.++|||||++++.++..
T Consensus 105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 87642 679999999999888 345678999999999999988877754
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-15 Score=123.01 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=85.1
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
++...-.++||+|||.|.++..|+.+ ..+++++|+|+.+++.|+++.... ++|+|.+.|+.+..++++||+|+++.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES
T ss_pred cCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 45555679999999999999999988 469999999999999999988654 59999999998876668999999999
Q ss_pred cccchh---hHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMK---NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++++. +...+++.+...|+|||.+++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999994 467789999999999999999765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=126.77 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 197 (357)
+...+....+.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...+. ++.++.+|+.+....++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCe
Confidence 3344455556678899999999999999998762 35999999999999999999988877 789999998764333689
Q ss_pred cEEEEcccccchh---------------------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++++++..-. ....+++.+.++|||||.+++...+
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999998764321 2466888999999999999986543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=131.57 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
+.+++.....++.+|||||||+|.+++.+++++|+.+++++|. +.+++.+++++...++. +++++.+|+.+.+.+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 4455666677888999999999999999999999999999998 78999999999988874 899999999864443 47
Q ss_pred cEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|++..++|++.+ ...+++++.+.|+|||++++.++..
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99999999988743 4679999999999999999987643
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=128.66 Aligned_cols=105 Identities=14% Similarity=0.189 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHH-H-HHHCCCcEEEEEcCCHHHHHHHHHHHHH-cCCC-CeEEEEeccCCCccc-cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLY-I-AQKYSNCKITGICNSKTQKEFIEEQCRV-LELQ-NVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~-l-a~~~p~~~v~~vD~s~~~l~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.++.+|+|||||.|.++.. + +..+|+.+++++|+|+++++.|++.+.. .++. +++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3678999999998855333 3 3456899999999999999999999964 6664 799999999876433 78999999
Q ss_pred cccccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. +++++ +++.++++.+.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88888 789999999999999999999976
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-14 Score=123.36 Aligned_cols=115 Identities=24% Similarity=0.354 Sum_probs=97.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.....++.+|||+|||+|..+..+++..|. .+++++|+++.+++.++++.. ..++++++.+|+.+.+.+ ++|
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcE
Confidence 3444444557889999999999999999998865 699999999999999988775 223789999999886654 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++.++++++++..+++.+.+.|+|||++++.....
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999999999999999999999999999999876543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=120.74 Aligned_cols=111 Identities=15% Similarity=0.319 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc--ccC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EAS 196 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~ 196 (357)
.+..+.+.++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.+++++...++ +++.++.+|..+... .++
T Consensus 32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3456778889999999999999999998764 457999999999999999999998884 689999999876422 267
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
||+|++... ..++..+++.+.+.|+|||++++...
T Consensus 112 ~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 112 FDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 999999653 34667899999999999999988554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=120.59 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cc-ccCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~f 197 (357)
.++..+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.+++++...+.++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 355666777889999999999999999998777889999999999999999999988887899999998652 11 1346
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.|+... ......+++.+.+.|+|||.+++..++.
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7776643 2346789999999999999999987643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=118.66 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEEeccCCCc--cccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE--MEASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~-~~~~d~~~~~--~~~~fD~Ii~~~~ 205 (357)
....|||+|||+|..-.+.-. -|+++|+++|+++.|-+.+.+.+++....++. |+.++.++++ ..+++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345689999999998765542 26889999999999999999999887545777 9999999987 3489999999999
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.+.++.+.++++.++|+|||++++...
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999999999999999999999988544
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=122.85 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=96.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 196 (357)
..+.......++.+|||||||+|.++..+++. +++++++|+|+.+++.++++....+. ++++...|+.+.+ ..++
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCC
Confidence 33444443457889999999999999999876 67999999999999999998877666 6888888887654 2378
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|++..++++.++...+++.+.+.|+|||.+++..+.
T Consensus 115 fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 115 FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 999999999999999999999999999999999988664
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-14 Score=130.20 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
.++......++.+|||+|||+|.+++.++.. +.+++|+|+|+.++..+++|++..+++++.+..+|+.+++.. ++||
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence 3445556778899999999999999887764 789999999999999999999998887789999999987654 7899
Q ss_pred EEEEcccccch---------hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 199 RIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|++++|+... ..+..+++.+.++|+|||++++..++..
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 99999987431 2257899999999999999999877543
|
This family is found exclusively in the Archaea. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-14 Score=121.53 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....++..+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..+++++++..+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 33455666777788999999999999999888773 58999999999999999999998887899999998663223 6
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||+|++..+.+++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876554 3457789999999998766
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=129.77 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=96.1
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--cc-ccCcc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EM-EASYD 198 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~-~~~fD 198 (357)
++......+..+||||||+|.++..+|...|+..++|+|+++.+++.|.+++...+++|+.++++|+..+ .. ++++|
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCcee
Confidence 3334444567999999999999999999999999999999999999999999999998999999998653 22 37899
Q ss_pred EEEEcccccchhh------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.|+++.+..+... ...+++.+.++|+|||.+.+.+-..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999877654422 2578999999999999999976654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=119.90 Aligned_cols=152 Identities=17% Similarity=0.268 Sum_probs=114.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 203 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~ 203 (357)
+.++.+|||+|||.|.+...|.+.- +++.+|+|++++.+..+.++ .+.++++|+.+-. ++ ++||.||++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 3588999999999999999998863 89999999999987666553 5678999998732 33 899999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhc-ccCCCCCCCHHHHHhhcCCcEEEEeEE
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 282 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~w~ 282 (357)
.+++++.++..+++++.++ |...+++.|+. ..|-.+. +.-.|.+|.... ....|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNF------------g~W~~R~~l~~~GrmPvt~~---------lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPNF------------GHWRNRLQLLLRGRMPVTKA---------LPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecCh------------HHHHHHHHHHhcCCCCCCCC---------CCCccc
Confidence 9999999999999998766 66777766643 3343333 233666776442 244677
Q ss_pred ecCccHHHHHHHHHHHHHhcHHHHHHHH
Q 018346 283 VNGKHYAQTSEEWLKRMDNNLASIKPIM 310 (357)
Q Consensus 283 ~~g~~y~~tl~~w~~~l~~~~~~~~~~~ 310 (357)
++.+-..-|++++.+...+.+.+|.+..
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 7665445788888888888888877653
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=117.76 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=88.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEEeccCCCccccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+..+ +.++.+|+.+.....+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 57789999999999999999987 7899999999999999999998877743 8999999876433357999999987
Q ss_pred ccc---------------------hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEH---------------------MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~---------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.. ......+++++.++|||||.+++..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 643 122466899999999999999887653
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=120.23 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=91.2
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc
Q 018346 116 AMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 192 (357)
Q Consensus 116 ~~l~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~ 192 (357)
.+...+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++....+. +++.|.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 34444555554 456889999999999999999876 67999999999999999999887765 48999999998765
Q ss_pred cccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEE
Q 018346 193 MEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
++||+|++..+++++ ++...+++++.+.+++++.+.+
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 789999999998877 3467789999998887655443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=118.29 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=86.1
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----ccccCcc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD 198 (357)
+.+++.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.++++.. +|+.++.+|.... +..++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 457788999999999999999999999876569999999999999887776653 4899999998752 1235799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|++.... ......+++++.++|||||.+++..+.
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99975331 112245689999999999999997553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-14 Score=146.77 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=110.3
Q ss_pred hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
+.||+....+-+.+++|+ ++++.+.+. +...+. -++.+|||+|||+|.+++.+++.+|..+
T Consensus 82 ~~F~~l~~~V~p~VLIPR---------peTE~lve~--------L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~ 144 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE---------DWSFTFYEG--------LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSK 144 (1082)
T ss_pred EEecCCceeeCCCcccCc---------hhHHHHHHH--------HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCE
Confidence 688888888888888887 555555443 111111 1356899999999999999999988889
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC----------------CCeEEEEeccCCCccc--cCccEEEEcccccc---------
Q 018346 156 ITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEME--ASYDRIYSIEMFEH--------- 208 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~--------- 208 (357)
|+|+|+|+.+++.|++|+..+++ ++++|+++|+.+.... .+||+||||+++-.
T Consensus 145 v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~ 224 (1082)
T PLN02672 145 VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSK 224 (1082)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcCh
Confidence 99999999999999999987542 3799999999874322 26999999998621
Q ss_pred -----------------------------hhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 209 -----------------------------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 209 -----------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..+++++..+.++|+|||.+++++-...
T Consensus 225 eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 225 LVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred hhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 01147788899999999999999876543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=119.84 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=86.4
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH------------cCCCCeEEEEeccCCCc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV------------LELQNVEIIVADISTFE 192 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~------------~~~~~v~~~~~d~~~~~ 192 (357)
+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+.+++.+...... ....+|++.++|+.++.
T Consensus 33 ~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 33 LALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred hCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34456789999999999999999987 89999999999999976432110 01137899999999875
Q ss_pred cc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 193 ME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 193 ~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. ..||.|+...+++++ ....++++.+.++|+|||++++.+..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 43 679999999999888 34678999999999999986665443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=117.40 Aligned_cols=98 Identities=22% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++.+..+|+... .++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcch
Confidence 356789999999999999999987 56899999999999999999887776 4799999995432 367999999999
Q ss_pred ccchh--hHHHHHHHHHHhcccCce
Q 018346 206 FEHMK--NYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 206 ~~~~~--~~~~~l~~~~~~LkpgG~ 228 (357)
++|++ ....+++.+.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 98864 556788888887654443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=114.17 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~ 195 (357)
+...+++.+.+.++.+|||||||+|..+..+++. ..+|+.+|..++..+.|++|+...|+.||.++++|...- +...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 5556788888999999999999999999999988 459999999999999999999999998899999998763 3337
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+||.|+.......+| +.+.+.|||||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 899999998887665 336678999999998665
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=124.01 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=80.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC---cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 203 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~ 203 (357)
.++.+|||+|||+|.++..+++..|. ..++|+|+|+.+++.|+++. +++.+..+|+.+++++ ++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 34578999999999999999987653 47999999999999987652 3789999999987765 789999986
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.. ...++++.++|||||.+++..++..
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 54 2346789999999999999877653
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-13 Score=117.72 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=134.6
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCcccc
Q 018346 22 RNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCC 101 (357)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~ 101 (357)
.|+..+...+.++..++..++.........+....+. .. ....+.+++. ++...+
T Consensus 15 ~Gi~~~~~k~~~v~~Rl~~~~~~~~~~~~~~y~~~l~-------~~-----------------~~e~~~~l~~-ltin~T 69 (268)
T COG1352 15 TGIDFDNYKRTLVYRRLSRRLRKLGLKNFEEYLNLLE-------SD-----------------SEELQAFLDA-LTINVT 69 (268)
T ss_pred cCcCchhhhHHHHHHHHHHHHHHhCcccHHHHHHHHh-------CC-----------------HHHHHHHHHH-hhhccc
Confidence 3667666788888888888887655544444433332 11 1223333333 445556
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC-----CcEEEEEcCCHHHHHHHHHH
Q 018346 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKITGICNSKTQKEFIEEQ 172 (357)
Q Consensus 102 ~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p-----~~~v~~vD~s~~~l~~a~~~ 172 (357)
.|.++.+.+.......++.++..... ...+|+.+||++|. +++.+.+.+| ..+|+|+|+|..+++.|+.-
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 77778888888888888877765433 57899999999995 6666666664 47999999999999998763
Q ss_pred HHH-----cC-----------------------C-CCeEEEEeccCCCc-cccCccEEEEcccccch--hhHHHHHHHHH
Q 018346 173 CRV-----LE-----------------------L-QNVEIIVADISTFE-MEASYDRIYSIEMFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 173 ~~~-----~~-----------------------~-~~v~~~~~d~~~~~-~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~ 220 (357)
.-. .+ + ..|.|...|+.+.+ ..+.||+|+|.+++.++ +...++++.++
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 211 11 1 25899999998765 55789999999999999 55788999999
Q ss_pred HhcccCceEEEEe
Q 018346 221 KWMKEDTLLFVHH 233 (357)
Q Consensus 221 ~~LkpgG~l~~~~ 233 (357)
..|+|||.|++-.
T Consensus 229 ~~L~~gG~LflG~ 241 (268)
T COG1352 229 DSLKPGGLLFLGH 241 (268)
T ss_pred HHhCCCCEEEEcc
Confidence 9999999999943
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=121.31 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=83.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++++..+++. ++.+...|.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 367899999999999999888653 469999999999999999999988874 566776664332 23689999998764
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+ ....++..+.++|||||.++++.+.
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 3467899999999999999997653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=118.24 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+..++++...|+.+.+.. ++||+|+++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 567999999999999999988877664689999998765433 689999999999
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++.++..+++.+.+.|+|||.+++..+.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999987654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-13 Score=120.08 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||||.+++..++.. ..+|+|+|++|.+++.|++|+..++++. ++....+....+..++||+|++|-.-+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 78999999999999999999874 3579999999999999999999998853 333333333333226899999986322
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-...+...+.+.|||||+++++-+
T Consensus 241 ---vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 241 ---VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ---HHHHHHHHHHHHcCCCceEEEEee
Confidence 346788899999999999999654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.3e-13 Score=118.57 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=82.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHH----CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.++.+|||+|||+|.++..+++. .|+.+|+|+|+|+.+++.|+++.... ++++...+...++.. ++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 46789999999999999988753 34579999999999999998875433 456666665554433 78999999
Q ss_pred cccccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 203 IEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.+++|+++ ...+++++.++++ |.+++......
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999966 4579999999998 56666655443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=118.32 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
+.+...+..-.|++|||||||+|..+..++.+. ...|+|+|.++....+.+....-.|.+ .+.++...+++++..+.|
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~F 183 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAF 183 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCc
Confidence 344444434468999999999999999999884 357999999998776654433333433 334443456666545789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
|+|+|.++++|..++-..+..+++.|+|||.+++++......
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 999999999999999999999999999999999998876543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=116.04 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.+...+++.+.+.++.+|||||||+|..+..++... +...|+++|+++...+.|++++...+..||.++.+|.......
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 456678888889999999999999999999999875 4458999999999999999999999988999999998764323
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+||.|++......++ ..+.+.|++||++++-.-.
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 7899999998876553 3366789999999986554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=132.79 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=91.0
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC--Cccc-cC
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME-AS 196 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~-~~ 196 (357)
.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++... ..++++++++|+.. .+++ ++
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCC
Confidence 4455555556789999999999999999987 5699999999999987755321 22489999999864 3333 68
Q ss_pred ccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|+++.+++++++ ...+++++.++|||||.+++...+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999999999999965 678999999999999999997654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-13 Score=118.87 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=123.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCcccc
Q 018346 22 RNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCC 101 (357)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~ 101 (357)
.|+......+.++...+..++....-+++.+.+..+. . +.+.+..+.+++ .+..+.+
T Consensus 38 ~Gi~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~-------~---------------~~~~~e~~~li~-~ltineT 94 (287)
T PRK10611 38 AGIVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLE-------S---------------NQNSAEWQAFIN-ALTTNLT 94 (287)
T ss_pred HCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHh-------c---------------CCCHHHHHHHHH-HhhCCCC
Confidence 4777777777888888888887766656555544433 1 111122333322 2555567
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHH
Q 018346 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 102 ~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~ 173 (357)
+|.++...+...... +... .+..+|+..||++|. +++.+.+..+ ..+|+|+|+|+.+++.|++..
T Consensus 95 ~FFRd~~~f~~L~~~-----~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 95 AFFREAHHFPILAEH-----ARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CccCCcHHHHHHHHH-----HHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 788776666544322 1111 235899999999996 4444444332 368999999999999998752
Q ss_pred HH-----------------------cC-------C-CCeEEEEeccCCCcc--ccCccEEEEcccccch--hhHHHHHHH
Q 018346 174 RV-----------------------LE-------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKK 218 (357)
Q Consensus 174 ~~-----------------------~~-------~-~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~--~~~~~~l~~ 218 (357)
-. .+ + +.|+|.+.|+.+.++ .+.||+|+|.+++.|+ +...+++++
T Consensus 168 Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 168 YRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred CCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHH
Confidence 00 01 1 368999999987433 3789999999999999 567889999
Q ss_pred HHHhcccCceEEEEe
Q 018346 219 ISKWMKEDTLLFVHH 233 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~ 233 (357)
+.+.|+|||+|++..
T Consensus 248 l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 248 FVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHhCCCcEEEEeC
Confidence 999999999988854
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=114.35 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=102.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 196 (357)
..++..+++.++.+|+|.|+|||.++.+|+... |..+|+..|+-++..+.|++|++..++. +|++..+|+.+...++.
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 357778899999999999999999999999754 6689999999999999999999998886 59999999998655578
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
||+|+. .++++.++++.+.+.|||||.+++..|+.+.
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 999998 5668999999999999999999998887644
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=118.49 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=76.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++++..+++ +++.+..+| .+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH
Confidence 467899999999999999877653 34699999999999999999998876 344433332 269999998643
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ....+++++.++|||||.++++.+
T Consensus 190 ~---~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 N---PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3 346788999999999999999754
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=109.76 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcC---CCCC-CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEecc
Q 018346 114 EKAMLELYCERSR---LEDG-HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI 188 (357)
Q Consensus 114 ~~~~l~~l~~~~~---~~~~-~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~ 188 (357)
+.++++.+.+... +.+. .+|||+|||.|.+...|++..-....+|+|.|+.+++.|+..++..+.++ |+|.+.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 3445555555443 3333 49999999999999999987423459999999999999999999988864 99999999
Q ss_pred CCCccc-cCccEEEEcccccch---h-----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 189 STFEME-ASYDRIYSIEMFEHM---K-----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 189 ~~~~~~-~~fD~Ii~~~~~~~~---~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+..+. ++||+|.--..+..+ + .+.-.+..+.+.|+|||+++|...+.
T Consensus 128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 985433 789999888777655 1 12446788899999999999876543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=119.47 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=77.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCccccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ ..+++|...|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999986 7899999999999999999987642 23688999998654 3789999999
Q ss_pred ccccchhh--HHHHHHHHHHhcccCceEE
Q 018346 204 EMFEHMKN--YQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 204 ~~~~~~~~--~~~~l~~~~~~LkpgG~l~ 230 (357)
.+++|+++ ...+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988854 3456666664 45555543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=115.29 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred HHHHHcC-CCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 120 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
.+.++.. +.++.+|||+|||+|.++..+++.. +...|+|+|+++. .+..+++++++|+.+..
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHH
Confidence 3444444 4678899999999999999999886 4579999999882 12347899999998842
Q ss_pred ---c-ccCccEEEEcccccchhh-----------HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 ---M-EASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ---~-~~~fD~Ii~~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. .++||+|+|+.+.+...+ ...+++.+.++|||||.+++.++...
T Consensus 110 ~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred HHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 2 267999999875544311 24689999999999999999776543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=126.20 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=94.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~f 197 (357)
+...++..++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++++..|+ +++++++|+.+.+. .++|
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCC
Confidence 3445567789999999999999999999987667999999999999999999999888 58899999986532 2679
Q ss_pred cEEEEcccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.|+++++.... .....+++.+.+.|||||.+++++.+.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999988865321 113578999999999999999877543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=116.72 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=101.3
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcE
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCK 155 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~ 155 (357)
.-+||. +.+.|+.+..-. .||. +..=.+........+++.+ .++.+|||+|||+|..+..|++.++ +.+
T Consensus 20 ~~~yd~~G~~lf~~i~~~p-----eYy~--tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~ 90 (301)
T TIGR03438 20 KYFYDARGSELFEQICELP-----EYYP--TRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPAR 90 (301)
T ss_pred hhcccchHHHHHHHHHCCC-----cccc--HHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCe
Confidence 456654 456677775543 2222 1110111122223333333 3668999999999999999998875 579
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC-ccccCc-----cEEEEcccccch--hhHHHHHHHHHHhcccC
Q 018346 156 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEASY-----DRIYSIEMFEHM--KNYQNLLKKISKWMKED 226 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~f-----D~Ii~~~~~~~~--~~~~~~l~~~~~~Lkpg 226 (357)
|+++|+|++|++.+++++..... .+|.++++|+.+. +....+ .++++..+++++ ++...++++++++|+||
T Consensus 91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998765431 1678899999863 222222 344455567766 45678999999999999
Q ss_pred ceEEEEeccCC
Q 018346 227 TLLFVHHFCHK 237 (357)
Q Consensus 227 G~l~~~~~~~~ 237 (357)
|.+++......
T Consensus 171 G~~lig~d~~~ 181 (301)
T TIGR03438 171 GGLLIGVDLVK 181 (301)
T ss_pred CEEEEeccCCC
Confidence 99998655443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=120.45 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
++..+++.+.+.++.+|||+|||+|.++..+++..+ ...|+++|+++++++.|+++++..+.+++.++.+|..+....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 444566667777889999999999999999998764 357999999999999999999998888899999998765433
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||+|++......+ ...+.+.|+|||.+++...
T Consensus 148 ~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 148 APYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCccEEEECCchHHh------HHHHHHhcCCCCEEEEEeC
Confidence 679999998655443 2346778999999888653
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=115.17 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=83.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
...+|||+|||+|.++..++.+.++.+|+++|+|+.+++.++++. ++++++++|+.+.....+||+|++|+++.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 456999999999999999988766689999999999999998763 378999999988654478999999999987
Q ss_pred hhh--------------------HHHHHHHHHHhcccCceEEEEecc
Q 018346 209 MKN--------------------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 209 ~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+. ..+++.....+|+|+|.+++...+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 511 245677778899999977776443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=120.17 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=77.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||||.+++..++.. ..+|+|+|++|.+++.|++|+..+++. ++.+ ....+.. ..+||+|++|-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~~~-~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSEDLV-EGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSCTC-CS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecccc-cccCCEEEECCCH
Confidence 467899999999999999999873 358999999999999999999999985 4433 2222222 3789999998655
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ -...++..+.++|+|||.++++-+
T Consensus 236 ~---vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 236 D---VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp H---HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred H---HHHHHHHHHHHhhCCCCEEEEccc
Confidence 4 346778889999999999999755
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=126.15 Aligned_cols=114 Identities=19% Similarity=0.271 Sum_probs=93.6
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCcc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYD 198 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD 198 (357)
...+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.+++++...|+++++++++|+.+.. .+++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 334566788999999999999999999876 56799999999999999999999999878999999998753 226899
Q ss_pred EEEEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|+++++.... + ....+++.+.++|||||.++.++.+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99998764322 0 1246899999999999999876544
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=116.89 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
+...++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.++++++..++.+|.++..|...++.. ++||.|++
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 4567889999999999999999998763 369999999999999999999999988899999998765433 57999999
Q ss_pred cccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.... ....++++.+.++|||||+++.++.+.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 8765332 123568999999999999998876543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=125.36 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 200 (357)
.++..++.+|||+|||+|..+..++... ++.+|+++|+|+.+++.++++++..|+++++++++|...++ ..++||.|
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 4566788999999999999999999876 45799999999999999999999999878999999988764 23679999
Q ss_pred EEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.+.... + ...+++..+.+.|||||.++.++.+.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 998766322 1 24678999999999999998887764
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=110.70 Aligned_cols=108 Identities=14% Similarity=0.243 Sum_probs=85.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++..++++++++++|+.+... ..+||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 356799999999999999765554 46999999999999999999999988789999999876321 246999999999
Q ss_pred ccchhhHHHHHHHHHH--hcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKISK--WMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~ 237 (357)
+.. .-...+++.+.. +|+|+|.++++.....
T Consensus 131 y~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 131 FRK-GLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred CCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 642 223455565554 3799999999876543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=124.59 Aligned_cols=114 Identities=21% Similarity=0.186 Sum_probs=93.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
..+...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.+++++...|+++|+++++|+...+..++||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 345566789999999999999999988653 4699999999999999999999999878999999998765446899999
Q ss_pred Ecccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+.... .....++..+.+.|||||++++++.+.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 87543211 123468999999999999999987655
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=126.06 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=100.1
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 95 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 95 ~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+.++++.|...+... ...+++.+++.+...++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+.
T Consensus 266 ~f~~~~~~F~q~n~~~---~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 266 RLAFSPRDFIQVNAQV---NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred EEEECCCCeEEcCHHH---HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHH
Confidence 3445555554322222 2346666777777778889999999999999999987 4799999999999999999999
Q ss_pred HcCCCCeEEEEeccCCCc----c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 175 VLELQNVEIIVADISTFE----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 175 ~~~~~~v~~~~~d~~~~~----~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++++|+.+|+.+.. . .++||+|+++++..... ..++.+.+ ++|++.+++++.
T Consensus 341 ~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~---~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 341 RNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA---EVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred HcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH---HHHHHHHh-cCCCeEEEEEeC
Confidence 988888999999987531 2 25799999999987653 44555554 699999888764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=123.50 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=94.3
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-cc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~ 195 (357)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...|+++|+++++|....+ . .+
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccc
Confidence 344566788999999999999999999875 34699999999999999999999999988999999998754 2 26
Q ss_pred CccEEEEcccccch------hh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||.|+++.+.... ++ ..+++..+.+.|||||.++.++.+.
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 79999987653221 11 4678999999999999998876543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=108.28 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=85.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++.+|+.+.+.+ .+|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45666677778889999999999999999987 67999999999999999988754 34899999999987655 469
Q ss_pred cEEEEcccccchhhHHHHHHHHHHh--cccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~--LkpgG~l~~~~~ 234 (357)
|.|+++.+++-. ..++..+.+. +.++|.++++..
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEHH
Confidence 999999998643 2344444432 447888877643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=97.37 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.5
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEcccccc-
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 208 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~- 208 (357)
+|+|+|||.|..+..+++ .+..+++++|+++.++..+++.....+..++++...|..+... .++||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 4578999999999999988864444444589999999988653 378999999999998
Q ss_pred hhhHHHHHHHHHHhcccCceEEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 778899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=122.28 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=92.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc---ccC
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EAS 196 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~ 196 (357)
+...+...++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.++++++..|++ ++.+..+|....+. .++
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 44456677889999999999999999998876689999999999999999999998885 33446677654432 267
Q ss_pred ccEEEEcccccc------hhh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEH------MKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~------~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||.|++..+... .++ ..+++..+.++|||||.++.++.+.
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999998764332 121 4679999999999999999987765
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=115.83 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc--ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~fD~Ii~~~ 204 (357)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.|++++...+. ++++++.+|..+... +++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456899999999999999999999999999999999999999998765443 489999999866421 26799999864
Q ss_pred ccc-chh---hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFE-HMK---NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.-. ..+ ....+++.+.+.|+|||++++.....
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 211 111 23689999999999999999965543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=105.86 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=90.6
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH------------HcCCCCeEEEEeccCC
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR------------VLELQNVEIIVADIST 190 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~------------~~~~~~v~~~~~d~~~ 190 (357)
..+...++.+||+.|||.|..+.+|+.+ |.+|+|+|+|+.+++.+.+... .....+|++.++|+.+
T Consensus 37 ~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 37 SKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3344456789999999999999999998 8899999999999998755210 0111279999999999
Q ss_pred Cccc----cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 191 FEME----ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 191 ~~~~----~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++.. ++||+|+-...++++ +...+..+.+.++|+|||.+++.+...
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 8531 579999999999999 346778999999999999999887643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-12 Score=119.94 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 95 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 95 ~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+.++++.|...+....+ .++..+.+.+...++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|++
T Consensus 202 ~~~~~~~~F~Q~n~~~~~---~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAA---QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred EEEECCCccccCCHHHHH---HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHH
Confidence 455666666543333333 34444444443335679999999999999999965 6799999999999999999999
Q ss_pred HcCCCCeEEEEeccCCCcc--ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 175 VLELQNVEIIVADISTFEM--EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 175 ~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+++++++|+.+|+.+... ..+||+|+++++..++. ..+++.+. .++|++.+++++.
T Consensus 277 ~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~--~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 277 MLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIG--KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred HcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc--HHHHHHHH-hcCCCeEEEEEeC
Confidence 9988889999999976432 14699999999987553 44555554 4799999888764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=110.16 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
..+.......+..+|+|||+|+|.++..+++++|+.+++..|+ |..++.+++ .++|+++.+|+.+ +.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-cc
Confidence 4455566677778999999999999999999999999999999 888888877 3499999999984 4445 99
Q ss_pred EEEEcccccch--hhHHHHHHHHHHhcccC--ceEEEEeccCC
Q 018346 199 RIYSIEMFEHM--KNYQNLLKKISKWMKED--TLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~--~~~~~~l~~~~~~Lkpg--G~l~~~~~~~~ 237 (357)
+|+...++|++ ++...+++++++.|+|| |+|+|..+..+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 99999999998 45678999999999999 99999776543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=110.21 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++.. ++.++.+|+......++||+||+|+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998864 35699999999999999997742 68899999986554568999999999
Q ss_pred ccch------------hhHHHHHHHHHHhcccCce
Q 018346 206 FEHM------------KNYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 206 ~~~~------------~~~~~~l~~~~~~LkpgG~ 228 (357)
+... .....+++.+.++++||+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 8633 1245688888886666664
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-12 Score=110.11 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=84.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHC----C-CcEEEEEcCCHHHHHHHHH
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY----S-NCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~----p-~~~v~~vD~s~~~l~~a~~ 171 (357)
++|.++...+......++..+++.....+..+|+.+||++|. +++.+.+.. + ..+++|+|+|+.+++.|++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 456677777777777777666655444467899999999996 444444421 1 3699999999999999987
Q ss_pred HH--------------HH-----cC--------C-CCeEEEEeccCC-CccccCccEEEEcccccch--hhHHHHHHHHH
Q 018346 172 QC--------------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 172 ~~--------------~~-----~~--------~-~~v~~~~~d~~~-~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~ 220 (357)
-. .+ .+ + ++|+|...|+.+ .+..+.||+|+|.+++.++ +...++++.+.
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLH 162 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHG
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHH
Confidence 32 00 01 1 369999999998 3333889999999999999 45678999999
Q ss_pred HhcccCceEEEEe
Q 018346 221 KWMKEDTLLFVHH 233 (357)
Q Consensus 221 ~~LkpgG~l~~~~ 233 (357)
+.|+|||.|++..
T Consensus 163 ~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 163 RSLKPGGYLFLGH 175 (196)
T ss_dssp GGEEEEEEEEE-T
T ss_pred HHcCCCCEEEEec
Confidence 9999999999943
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=109.54 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
..++..++.. .++.+|||+|||+|..++.++...| +.+|+++|+++++++.|+++++..|+. +++++.+|+.+..
T Consensus 57 g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3344444433 3578999999999999999998764 679999999999999999999999984 8999999987641
Q ss_pred c-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. .++||+|++...- +.+..+++.+.++|+|||.+++..
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 2579999987542 456788999999999999988753
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-12 Score=110.14 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-- 193 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 193 (357)
+..++..+++.||.+|||.|+|+|.++.+|++.. |..+|+..|..++..+.|+++++..|++ +|++.+.|+.+..+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4457788899999999999999999999999764 7889999999999999999999999995 89999999965332
Q ss_pred --ccCccEEEEcccccchhhHHHHHHHHHHhc-ccCceEEEEeccCCC
Q 018346 194 --EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~ 238 (357)
+..+|.|+.. ++++...+..+.+.| +|||++++..|+.+-
T Consensus 109 ~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 109 ELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp T-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred cccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 2579999984 557788899999999 999999998887643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=115.08 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~ 194 (357)
+++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++++++|+++|+.++.. .
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence 4444444443335689999999999999999985 68999999999999999999999998889999999987532 2
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++||+|+++++-..+. ..+++.+ ..++|++.+++++..
T Consensus 239 ~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 239 EVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred CCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEECCc
Confidence 5799999999966542 2333333 346788877776543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=105.70 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------c-cc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------M-EA 195 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------~-~~ 195 (357)
.+.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+ ..+++.++++|+.+.. . .+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 44688999999999999999998876 45689999999864 1237888999987632 1 25
Q ss_pred CccEEEEcccc--------cch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+++.+. ++. .....++..+.++|+|||.+++..+..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 79999997542 111 224678999999999999999976543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-12 Score=118.53 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=86.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----ccCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~fD~Ii 201 (357)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999877654 2459999999999999999999999874 79999999987421 24799999
Q ss_pred Ecccccch---------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++++.-.- .++..++..+.++|+|||.++..+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99986321 24667777889999999998876543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=106.53 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=89.2
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-c-----------CCCCeEEEEec
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIVAD 187 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-~-----------~~~~v~~~~~d 187 (357)
..++.+...++.+||..|||.|.....|+++ |.+|+|+|+|+.+++.+.+.... . ...+|++.++|
T Consensus 28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD 105 (218)
T PF05724_consen 28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD 105 (218)
T ss_dssp HHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc
Confidence 3444455667789999999999999999998 88999999999999988443221 0 11368999999
Q ss_pred cCCCccc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 188 ISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 188 ~~~~~~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.+++.. ++||+|+=...++.+ +...+..+.+.++|+|||.+++.+..
T Consensus 106 fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 106 FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 9997654 689999999999888 45778999999999999996555543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=110.12 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=81.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~f 197 (357)
+.+.+.++.+|||+|||+|..+..++... +...|+++|+|+.+++...+.+... +||.++..|+.... +.+++
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 34567889999999999999999999886 3468999999998665555444332 38899999986521 12579
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|++... ..++...++.++.++|||||.+++..
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 99999874 23344556678999999999999953
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.7e-12 Score=107.35 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=76.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc-cc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~-~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..+++.. +..++|+|+|+++++.++++ +++++.+|+.+ .+ .+ ++||+|+++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 367899999999999999888664 67889999999998887542 57888899875 32 33 6899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++|++++..+++++.+.++ .+++..+
T Consensus 84 ~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 84 TLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred HhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 99999999999998877654 4455444
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=105.27 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE
Q 018346 108 KTLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 185 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~ 185 (357)
..+...|..+....++.+.+++ +.-|||||||+|-.+..|... +...+|+|||+.|++.|.+.--+ -.++.
T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil 99 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLIL 99 (270)
T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeee
Confidence 3455556667777777777765 678999999999999888766 78899999999999999873222 24688
Q ss_pred eccCC-Cccc-cCccEEEEcccccch-----------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 186 ADIST-FEME-ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 186 ~d~~~-~~~~-~~fD~Ii~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+-+ +|+. ++||-+|+...++++ .-+..++..+..+|++|++.+++....
T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 88865 4554 899999999988766 114557888999999999999876544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=127.10 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=88.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc--ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~--~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|+..++++ +++++++|+.+... .++||+|++++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 57899999999999999999762 347999999999999999999999884 79999999876421 36899999998
Q ss_pred cccc-----------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+... ..++..++..+.++|+|||.+++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7521 24577889999999999999988654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=110.12 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=101.5
Q ss_pred hhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEE
Q 018346 79 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 158 (357)
Q Consensus 79 ~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~ 158 (357)
.-||.-.+.|+..+-..+.|+. -.++..++...+..+-.++||+|||||-.+..|... ..+++|
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~ltG 152 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRLTG 152 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--HhhccC
Confidence 3344445666666655566631 235566777777777789999999999999998876 568999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 159 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|||.+|++.|.++ |+ .-+..++|+..+. .+++||+|++..++.++.++..++..+...|+|||.+.+++-+
T Consensus 153 vDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 153 VDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred CchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 99999999888764 22 1122334433222 1278999999999999999999999999999999999997654
Q ss_pred C
Q 018346 236 H 236 (357)
Q Consensus 236 ~ 236 (357)
-
T Consensus 228 l 228 (287)
T COG4976 228 L 228 (287)
T ss_pred c
Confidence 3
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=104.36 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~Ii~~~~ 205 (357)
...+||||||.|.+...+|...|+..++|+|++...+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999999999999999999999999999999999999999999988732 2378999999876
Q ss_pred ccchh--------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEHMK--------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
=-+.. -...+++.+.++|+|||.+.+.+-.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 54442 1367999999999999999887653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=103.94 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEe
Q 018346 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 186 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~ 186 (357)
.+...+..++..++... ++.+||||||++|..++++++..| +++|+.+|++++..+.|+++++..|+. +|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34445556666666544 567999999999999999999886 689999999999999999999999884 8999999
Q ss_pred ccCCCcc-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 187 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 187 d~~~~~~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|..+... .++||+|+....= .++..+++.+.++|+|||.+++.-
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence 9876321 1479999998643 467888899999999999998853
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=111.18 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=84.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCcc--ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~~--~~~fD~I 200 (357)
.++.+||+||||+|..+..+++..+..+|+++|+++.+++.|++.+...+ -++++++.+|...... .++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45689999999999999999876445699999999999999999876432 2489999999876432 3689999
Q ss_pred EEcccccchh----hHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++...-...+ ...++++.+.+.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9975322211 136788999999999999988643
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=94.97 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=88.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
...-++|||||+|..+.+|++.. |++.+.++|+||.+++..++.++.++. +++.++.|+.+-..+++.|+++.|+++-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence 36789999999999999999875 778899999999999999999988887 7899999988754448999999999872
Q ss_pred ch---------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM---------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
-- .-..+++..+-.+|.|.|++++.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 11 114567777788899999999976644
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.7e-11 Score=114.62 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-- 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-- 192 (357)
..+++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+..
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 345566666666677789999999999999999987 5699999999999999999999999889999999987531
Q ss_pred --c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 --M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 --~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+||+|+++++-..+ ...+++.+.+ ++|++.+++++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEcC
Confidence 1 1469999999986553 2455555553 88999887753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=101.85 Aligned_cols=114 Identities=17% Similarity=0.317 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEE-eccCCC
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADISTF 191 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~-~d~~~~ 191 (357)
...+..+++. .++++|||||++.|..+++++...| +.+++.+|++++..+.|++++++.|++ +|..+. +|..+.
T Consensus 48 g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 4455555443 4778999999999999999999998 789999999999999999999999996 588888 476653
Q ss_pred cc---ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. .++||+|+...-= .+++.+++.+.++|+|||.+++.-.
T Consensus 125 l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 22 2789999986432 4678899999999999999988533
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-11 Score=97.14 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
+.-.+.+|+|+|||+|.+++..+-.. ..+|+|+|+++++++.+++|+.+.+ .+|.|+.+|+.++. ..+|.++.|++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC--CccceEEECCC
Confidence 34467899999999999999988764 3699999999999999999999844 48999999999875 67999999999
Q ss_pred ccch
Q 018346 206 FEHM 209 (357)
Q Consensus 206 ~~~~ 209 (357)
+.-.
T Consensus 118 FG~~ 121 (198)
T COG2263 118 FGSQ 121 (198)
T ss_pred Cccc
Confidence 9644
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=103.54 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 191 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~ 191 (357)
+..++..++.. .++++|||||||+|..+++++...| +.+|+++|.+++..+.|+++++..|+. +|+++.+|+.+.
T Consensus 106 ~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 106 QAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 34445545443 3578999999999999999998764 678999999999999999999999995 899999998763
Q ss_pred cc-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 EM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ~~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. .++||+|+....= .++..+++.+.++|+|||.+++.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEe
Confidence 21 1579999998653 46788999999999999998884
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=97.01 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcE---------EEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEe
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 186 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~---------v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~ 186 (357)
+...++......++..|||-.||+|.+.+..+...++.. ++|+|+++.+++.|++|+...++. .+.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 334466666777889999999999999999887655555 899999999999999999999885 7899999
Q ss_pred ccCCCcc-ccCccEEEEcccccch--------hhHHHHHHHHHHhccc
Q 018346 187 DISTFEM-EASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKE 225 (357)
Q Consensus 187 d~~~~~~-~~~fD~Ii~~~~~~~~--------~~~~~~l~~~~~~Lkp 225 (357)
|+.+++. .+++|+|++++++..- .-+..+++.+.++|++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999874 3789999999998543 2256778888899998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-11 Score=99.17 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=71.2
Q ss_pred EEEcCCHHHHHHHHHHHHHcC---CCCeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 157 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+|++|++.|+++....+ .++++|+++|+.+++.+ ++||+|++..+++++++...++++++++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987765322 24799999999998766 68999999999999999999999999999999999998
Q ss_pred eccCCC
Q 018346 233 HFCHKT 238 (357)
Q Consensus 233 ~~~~~~ 238 (357)
+++.+.
T Consensus 81 d~~~~~ 86 (160)
T PLN02232 81 DFNKSN 86 (160)
T ss_pred ECCCCC
Confidence 876543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-11 Score=102.03 Aligned_cols=108 Identities=23% Similarity=0.329 Sum_probs=88.1
Q ss_pred CEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-ccCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~fD~Ii~~ 203 (357)
.+||++|||.|.....+.+..|+ ..|+++|.||.+++..+++..... +++.....|+.... . ++++|+|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999988766 899999999999999888765433 36666666766432 2 2789999999
Q ss_pred ccccch--hhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 204 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 204 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
.++..+ +.....++++.++|||||.+++-+.+....
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 999888 457789999999999999999988766543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=105.21 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
..+.+||+||||+|..+..+++..+..+++++|+++++++.+++.+...+ .++++++.+|..+... .++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45569999999999999999876556789999999999999999875432 1378888888765321 26899999
Q ss_pred Ecccccch--hh--HHHHHHHHHHhcccCceEEEEec
Q 018346 202 SIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~~~--~~--~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+....... .. ..++++.+.+.|+|||++++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 97753222 11 46788999999999999998643
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=95.41 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--c--c-cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M--E-ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~--~-~~fD~Ii~ 202 (357)
++.+|||++||+|.+++.++.+. ..+|+++|.++.+++.+++|+..++.. +++++.+|+.+.. . . ..||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999999875 7999999996531 1 1 24899999
Q ss_pred cccccchhhHHHHHHHHHH--hcccCceEEEEeccC
Q 018346 203 IEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 236 (357)
.+++.. .....+++.+.+ +|+++|.++++....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 999864 344555555543 689999999887654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.96 Aligned_cols=109 Identities=21% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-------C---CCeEEEEeccCCCc------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------L---QNVEIIVADISTFE------ 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-------~---~~v~~~~~d~~~~~------ 192 (357)
++.+|||+|||-|+-..-..... -..++|+|+|...|+.|+++..... . -...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999888776666553 4699999999999999999983311 1 14678888876531
Q ss_pred cc-cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.. .+||+|-|...+|+. ...+.+++++.+.|+|||+++..+|....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 12 489999999999988 44667999999999999999999887543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-11 Score=101.94 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=74.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-ccCccEEEEcccccch
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-EASYDRIYSIEMFEHM 209 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~~~ 209 (357)
.++|+|||+|.-++.++..+ .+|+|+|+|+.||+.|++.....-. ....+...++.++.. +++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 89999999998888888874 5899999999999988875433221 123444444444432 3889999999999999
Q ss_pred hhHHHHHHHHHHhcccCc-eEEE
Q 018346 210 KNYQNLLKKISKWMKEDT-LLFV 231 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG-~l~~ 231 (357)
+.+++++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 68899999999998877 5444
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=103.89 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc--c-ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--M-EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~-~~~fD~I 200 (357)
.++.+||+||||.|..+..+++..+..+|+.+|+++.+++.+++.+... +. ++++++.+|..... . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987633468999999999999999987653 22 48999999976532 1 3579999
Q ss_pred EEcccccchh----hHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++...-...+ ...++++.+.+.|+|||+++....
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9975432221 235789999999999999977543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=94.27 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=79.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCeEEEEeccCCCc----cc-cCcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFE----ME-ASYD 198 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~~~----~~-~~fD 198 (357)
..++.+|||+|||+|..++.++...+..+|+.+|.++ .++..+.|+..++ . .++.+...|+.+.. .. .+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3578899999999999999999875578999999998 9999999998876 2 47888888886622 11 5799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+...+++.-.....+++.+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999888889999999999999999987776654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-10 Score=98.38 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=91.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cc-cCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~fD~Ii~~~~ 205 (357)
...+||||||.|.....+|++.|...++|||+....+..|.+.+.+.+++|+.+++.|+..+. .+ ++.|-|+.+.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 368999999999999999999999999999999999999999999999989999999988742 22 58999999876
Q ss_pred ccchhh--------HHHHHHHHHHhcccCceEEEEecc
Q 018346 206 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 206 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
=-+... ...+++.+.+.|+|||.+.+.+-.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 544421 467999999999999999996643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=102.22 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-~~ 196 (357)
..++......+|..|||--||||++.+.+.-. |++++|+|++..|+.-|+.|+...++....+... |+..++++ ++
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCc
Confidence 34555566789999999999999999998865 8999999999999999999999998877766666 99998877 45
Q ss_pred ccEEEEcccccch---------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|.|++.+++.-- .-+..+++.+.++||+||++++..+
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999988432 2267899999999999999999776
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=106.28 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
..+++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+...
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 34555555554332 357999999999999999987 45999999999999999999999998899999999876321
Q ss_pred ----------------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 194 ----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 194 ----------------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
..+||+|+..++..++ ...+++.+.+ |++++++++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEeCH
Confidence 1148999999997654 2445555543 78888887653
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=105.11 Aligned_cols=108 Identities=16% Similarity=0.087 Sum_probs=81.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH--HH---HcC--CCCeEEEEeccCCCcc--ccCc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ--CR---VLE--LQNVEIIVADISTFEM--EASY 197 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~--~~---~~~--~~~v~~~~~d~~~~~~--~~~f 197 (357)
..++.+||+||||.|..+..+++..+..+|+++|+++++++.|++. +. ... .++++++.+|..+... .++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3456899999999999998888764457999999999999999962 11 111 2489999999887432 2679
Q ss_pred cEEEEcccccc---h--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEH---M--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~---~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|++..+-.. . -.-..+++.+.+.|+|||++++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999853211 1 1236789999999999999888644
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=103.61 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEE-eccCCCc-----cccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIV-ADISTFE-----MEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~-~d~~~~~-----~~~~fD~I 200 (357)
++.+|||||||+|++...++...++++++|+|+++.+++.|++++..+ ++. +|++.. .|...+. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999999988878899999999999999999999998 674 788764 3332211 12579999
Q ss_pred EEcccccch
Q 018346 201 YSIEMFEHM 209 (357)
Q Consensus 201 i~~~~~~~~ 209 (357)
+||++++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999999754
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=96.09 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=84.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc-----cccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~fD~Ii~ 202 (357)
++.++||+.||+|.+++..+.+. ..+|+.||.|+.++...++|++..+.. ++..+..|..... ...+||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 68999999999999999998884 469999999999999999999999875 5899999965432 1268999999
Q ss_pred cccccchhhHHHHHHHHH--HhcccCceEEEEeccCCC
Q 018346 203 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~ 238 (357)
.||+..-..+..+++.+. .+|+++|.++++......
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 999976543577888887 789999999999876643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-10 Score=104.50 Aligned_cols=111 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
.+++.+++.+...+ .+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+..+++++++|+.+|+.+....
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHH
Confidence 35555555554323 479999999999999999874 59999999999999999999999988899999998763211
Q ss_pred ----------------cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ----------------~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..||+|+..++-.++ ...+++.+. +|++++++++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred hhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHH---cCCcEEEEEcC
Confidence 137999999996554 244555544 37888888764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=100.43 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
+++++++.+.+.++..++|.+||.|+.+..+++..| ..+|+|+|.++.+++.|++++.. .++++++++|+.++..
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHH
Confidence 566777877778888999999999999999999985 68999999999999999988765 3589999999987532
Q ss_pred cc---CccEEEEcc
Q 018346 194 EA---SYDRIYSIE 204 (357)
Q Consensus 194 ~~---~fD~Ii~~~ 204 (357)
+. ++|.|+++.
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 12 799999876
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=97.41 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 191 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~ 191 (357)
+..++..+++.. +..+|||||+++|..+++++... ++.+|+.+|++++..+.|++++...|+ ++|+++.+|+.+.
T Consensus 67 ~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 67 EGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 344555555443 56799999999999999999876 468999999999999999999999997 4899999998764
Q ss_pred cc--------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 EM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ~~--------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. .++||+|+...- -..+...++.+.++|+|||.+++.
T Consensus 144 L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 21 158999999754 245678888899999999998873
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-10 Score=105.41 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEcccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEH 208 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~~ 208 (357)
+.+|||++||+|..++.++...+..+|+++|+++.+++.+++|++.++++++++.++|+..+.. .++||+|+++++ .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--C
Confidence 4689999999999999999876545899999999999999999999998888899999876433 357999999874 2
Q ss_pred hhhHHHHHHHHHHhcccCceEEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....++..+.+.++|||.++++
T Consensus 136 --s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 --SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CcHHHHHHHHHHhcCCCEEEEE
Confidence 3456788877889999999998
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-10 Score=100.80 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
..++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.+.+
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-
Confidence 35566777777778899999999999999999988 56999999999999999988754 34899999999886543
Q ss_pred CccEEEEcccccc
Q 018346 196 SYDRIYSIEMFEH 208 (357)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (357)
.||.|++|.+++.
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 5899999999864
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-10 Score=106.15 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCccc-----cCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEME-----ASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~~-----~~fD~I 200 (357)
.|++|||+.|=||.++++.|.. |+ +||+||+|..+++.|++|++.+|++ ++.|+++|+.++... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999999976 66 9999999999999999999999984 689999999885321 489999
Q ss_pred EEcccc---------cchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMF---------EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..||- .-..++..++..+.++|+|||.+++.+....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999864 1236788999999999999999998776554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=93.28 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=85.7
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCcc---------ccCccEEE
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM---------EASYDRIY 201 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~---------~~~fD~Ii 201 (357)
+|||||||||..+.+++.++|.....-.|+++..+...+......+++|+ .-+..|+...+. .++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999999999999999999988888888877776543 234556655311 14799999
Q ss_pred Ecccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|..++|-+ .....+++.+.++|+|||.|++.-|-
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 99999876 55788999999999999999996553
|
The function of this family is unknown. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-10 Score=101.68 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~ 194 (357)
..++.+++...+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+ .++++++.+|+.+...
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence 35667777778888899999999999999999987 5789999999999999999988766 3589999999987654
Q ss_pred cCccEEEEcccccch
Q 018346 195 ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~ 209 (357)
..||.|++|.+++--
T Consensus 100 ~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 PYFDVCVANVPYQIS 114 (294)
T ss_pred cccCEEEecCCcccC
Confidence 468999999988644
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=104.96 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=97.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
..++...++.++..++.++||+-||.|.+++.+|+. ..+|+|+|+++++++.|++|++.++++|++|..+|.+++...
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 457778888888888899999999999999999976 679999999999999999999999998999999999886433
Q ss_pred ----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|.|+..++-.+.+ +.+++.+. .++|..++++++-
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred ccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeCC
Confidence 3789999999988774 34555554 4678888888654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=101.47 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
..+.+++.+.+.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++... ++++++++|+.+++.+.-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc
Confidence 44566777777788999999999999999999984 4999999999999999887643 489999999998765422
Q ss_pred -ccEEEEcccccc
Q 018346 197 -YDRIYSIEMFEH 208 (357)
Q Consensus 197 -fD~Ii~~~~~~~ 208 (357)
+|.|++|.++.-
T Consensus 105 ~~~~vv~NlPY~i 117 (272)
T PRK00274 105 QPLKVVANLPYNI 117 (272)
T ss_pred CcceEEEeCCccc
Confidence 599999998753
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-10 Score=110.67 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHH--HHHc-----CCCCeEEEEeccCCCcc--ccCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL-----ELQNVEIIVADISTFEM--EASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~--~~~~-----~~~~v~~~~~d~~~~~~--~~~f 197 (357)
+++++|||+|||+|..+..+++. |. .+|+++|+++++++.++++ .... ..++++++.+|..+... +++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 46789999999999999999875 44 7999999999999999984 2221 12489999999887422 2689
Q ss_pred cEEEEcccccchhh-----HHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+++.+....+. ..++++.+.+.|||||.+++...
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99999876543221 24689999999999999998754
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=93.59 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++.+|+|+.||.|.+++.+|+..++..|+++|++|.+++.+++|++.++++ ++..+++|..++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45789999999999999999998666789999999999999999999999985 68999999998765678999999887
Q ss_pred ccchhhHHHHHHHHHHhcccCceEE
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
-... .++..+.+++++||++-
T Consensus 179 ~~~~----~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESSL----EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSGG----GGHHHHHHHEEEEEEEE
T ss_pred HHHH----HHHHHHHHHhcCCcEEE
Confidence 5433 46777889999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=93.28 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CC-----------------------
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQ----------------------- 179 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~----------------------- 179 (357)
..+..+|||||.+|.++..+++.+....|+|+||++..|..|+++.+... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35789999999999999999999855689999999999999999864321 00
Q ss_pred -------CeEE-------EEeccCCCccccCccEEEEcccccch------hhHHHHHHHHHHhcccCceEEEE
Q 018346 180 -------NVEI-------IVADISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 180 -------~v~~-------~~~d~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
++.| ...|+.+.. ...||+|+|-.+--++ +....+++++.++|.|||+|+++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~-~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMI-QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhc-cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1222 222222111 1579999987765443 45889999999999999999995
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-09 Score=89.60 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=83.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccchhh
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 211 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~ 211 (357)
+++|||+|.|..++.++-.+|+.+++.+|.+..-+...+......+++|+++++..+++.....+||+|++..+- .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999999999999999999999999999999999883233789999999764 5
Q ss_pred HHHHHHHHHHhcccCceEEEE
Q 018346 212 YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 212 ~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+++-+.++|++||.+++.
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEE
Confidence 678899999999999998874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-09 Score=102.91 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=87.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEECCcccHHHHHHHHHC----CCcEEEEEcCCHHHHHHHHHHHH
Q 018346 103 FSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 103 f~~~~~~l~~~~~~~l~~l~~~~~~~----~~~~vLDiGcG~G~~~~~la~~~----p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
|+.+.......+.++...+.+..... .+..|+|+|||+|.++...++.. ...+|++||-|+.++...++.+.
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 33333334444455555555554433 25789999999999988776552 23699999999999888877777
Q ss_pred HcCC-CCeEEEEeccCCCccccCccEEEEcccc--cchhhHHHHHHHHHHhcccCceEE
Q 018346 175 VLEL-QNVEIIVADISTFEMEASYDRIYSIEMF--EHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 175 ~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.++. ++|+++.+|++++..+.++|+|||-..= ..-+-..+.+....+.|||||.++
T Consensus 236 ~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 236 ANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7777 5899999999998777899999985532 111345567888889999999764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=97.94 Aligned_cols=106 Identities=22% Similarity=0.241 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc----ccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM----EASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~----~~~fD~Ii~ 202 (357)
.+++|||+-|=+|+++.+.+... ..+|+.||.|..+++.+++|+..++++ +++|+..|+.+... .++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 57899999999999999887652 348999999999999999999999874 89999999887421 268999999
Q ss_pred ccccc------chhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 203 IEMFE------HMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 203 ~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+|-- -..++.+++..+.++|+|||.+++.+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98642 1156888999999999999998765543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-09 Score=93.59 Aligned_cols=86 Identities=19% Similarity=0.349 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.++.+++.++..++.+|||+|||+|.++..+++.. ..|+++|+++.+++.++++... .++++++.+|+.+.+.. .
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~ 91 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-D 91 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-H
Confidence 45567777777788999999999999999999885 4799999999999999887643 24899999999887653 5
Q ss_pred cc---EEEEccccc
Q 018346 197 YD---RIYSIEMFE 207 (357)
Q Consensus 197 fD---~Ii~~~~~~ 207 (357)
+| +|++|.+++
T Consensus 92 ~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 92 FPKQLKVVSNLPYN 105 (253)
T ss_pred cCCcceEEEcCChh
Confidence 66 999998875
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=93.68 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=79.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
...+.||.|+|.|.++..+.... -.+|..+|.++..++.|++.....+..-.++.+..+.++.++ .+||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999998775443 458999999999999999876552222467888888887655 7899999999999
Q ss_pred ch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+ .+..+++++|...|+|||++++-....
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99 568899999999999999999965543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=86.66 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=86.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc--cCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME--ASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~--~~fD~Ii~ 202 (357)
-.+.++||+-+|||.+++..+.+. ..+++.||.|..++...++|++..+. .+++++..|..... .. ++||+|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 368999999999999999999885 56999999999999999999999885 38899999988531 12 34999999
Q ss_pred cccccc-hhhHHHHHHH--HHHhcccCceEEEEeccCC
Q 018346 203 IEMFEH-MKNYQNLLKK--ISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~-~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~ 237 (357)
.+|++. +-+....+.. -..+|+|+|.++++.....
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 999982 2222223333 3467999999999877554
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=94.82 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-C-----CeEEEEeccCCC------ccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTF------EME 194 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~-----~v~~~~~d~~~~------~~~ 194 (357)
.+++..++|+|||-|+-++-.-+.. -..++|+||+...++.|+++.....- . .+.|+.+|.... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3577899999999999888776653 35899999999999999998765321 1 478999997652 223
Q ss_pred -cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+||+|-|-.++|+- ...+.++.++.++|+|||+++-.+|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 349999999999876 456778999999999999999988865
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=87.03 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=86.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC-ccEEEEcccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 208 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-fD~Ii~~~~~~~ 208 (357)
+.+++|||+|.|.-++.+|-.+|+.+|+-+|....-+...+......+++|++++++.++++..... ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 6899999999999999999888999999999999999999999999999899999999998764334 999999865
Q ss_pred hhhHHHHHHHHHHhcccCceEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.+...+.+-+..++|+||.+++
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchh
Confidence 3667788889999999998754
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=85.20 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=104.7
Q ss_pred cCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEE
Q 018346 81 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGI 159 (357)
Q Consensus 81 y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~v 159 (357)
++....|++.|+....+.. .+........+.+...++...+..|||+|.|+|.++..+.++. +...++++
T Consensus 9 f~~e~~F~k~wi~~PrtVG---------aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~i 79 (194)
T COG3963 9 FDEEISFFKGWIDNPRTVG---------AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAI 79 (194)
T ss_pred HHHHHHHHHHHhcCCceee---------eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEE
Confidence 3444578888877653331 1111122234456666677789999999999999999999875 55689999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEE
Q 018346 160 CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 160 D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 231 (357)
|.|++......+... .+.++.+|+.++.. . ..||.|+|..++-.++ -..++++.+...|.+||.++-
T Consensus 80 E~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 80 EYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred EeCHHHHHHHHHhCC-----CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 999998877766543 56689999887641 1 5699999999887773 456789999999999999988
Q ss_pred EeccC
Q 018346 232 HHFCH 236 (357)
Q Consensus 232 ~~~~~ 236 (357)
.+.++
T Consensus 155 ftYgp 159 (194)
T COG3963 155 FTYGP 159 (194)
T ss_pred EEecC
Confidence 77763
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=88.21 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=90.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCc----cccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFE----MEASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~----~~~~fD~I 200 (357)
..+.+||||.||.|..........|. .+|...|.|+..++..++.++..|+.++ +|.++|+.+.. .....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999998888876 6999999999999999999999999766 99999998742 11457999
Q ss_pred EEcccccchhh---HHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+.++.++.++| ....+..+.+++.|||.++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999966 456788999999999998874
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=98.86 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=91.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEEE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYS 202 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii~ 202 (357)
...++.+|||+|||.|+-+..++.... ...|+++|+++..+..+++|+.+.|+.+|.+...|...+. .+..||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 557889999999999999999998864 3689999999999999999999999988999999987653 2367999998
Q ss_pred cccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..+-.+. .-..+++..+.+.|||||+|+.++.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 7754321 113678999999999999998776653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=95.72 Aligned_cols=100 Identities=29% Similarity=0.450 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
-.++.|||+|||+|.+++..|+.+ ..+|+++|.|.-+ +.|.+.+..++++ .|+++.+.+++...+ ++.|+|+|-++
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 468999999999999999999986 5699999997765 9999999999986 589999999987656 89999999765
Q ss_pred ccchhhHHHHHHH----HHHhcccCceEE
Q 018346 206 FEHMKNYQNLLKK----ISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~~~~~~~l~~----~~~~LkpgG~l~ 230 (357)
=+.+ -++..+.. =-+.|+|||.++
T Consensus 137 Gy~L-l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFL-LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHH-HHhhhhhhhhhhhhhccCCCceEc
Confidence 4333 22333333 347899999865
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-09 Score=89.90 Aligned_cols=96 Identities=17% Similarity=0.295 Sum_probs=76.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~~ 207 (357)
...++||||+|.|.++..++..+ .+|+++|.|+.| +.+.++.|. +++ |..++.. ..+||+|.|.++++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~M----r~rL~~kg~---~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPM----RWRLSKKGF---TVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHH----HHHHHhCCC---eEE--ehhhhhccCCceEEEeehhhhh
Confidence 45789999999999999999885 479999999997 455555655 222 2222221 25799999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.-..+..+++.+++.|+|+|++++...-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999987653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.8e-09 Score=92.95 Aligned_cols=105 Identities=24% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
.-.++.|||+|||+|.++...+... ..+|++++.| +|.+.|++.++.+++ ++|.++.+.+++...+++.|+||+-++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccc
Confidence 3467899999999999999998874 5699999985 578999999988877 599999999999887889999998764
Q ss_pred ccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
=.-+ +..-+..-..++.|||.|.++=..
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 3222 112222334569999999976543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=84.14 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
++..+.+..+.-.|++++|+|||.|-++...+ .+....|+|+||+|++++.+.+|+....+ ++.++++|+.++.+. +
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCC
Confidence 44444445554578999999999999995544 22345899999999999999999999887 889999999987655 7
Q ss_pred CccEEEEcccccch
Q 018346 196 SYDRIYSIEMFEHM 209 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~ 209 (357)
.||.++.|+++..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999999998543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=80.50 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=73.7
Q ss_pred HHHHcCCCCCCEEEEECCcccH-HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~f 197 (357)
+.+.+...++.+|||||||+|. ++..|++. +..|+++|+|+.+++.++++ .+.++.+|+.+..+. ..+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcC
Confidence 4444444566899999999996 88888876 78999999999988777664 468899999986655 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|+|.+.-+-. +....+-++.+. -|.-+++...+...
T Consensus 79 ~liysirpp~---el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 79 KLIYSIRPPR---DLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred CEEEEeCCCH---HHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 9999865532 333334444432 25666665554443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=94.75 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=80.4
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 018346 98 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 177 (357)
Q Consensus 98 y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~ 177 (357)
++++.|...+.. ....+++.+++.++..++ +|||+.||.|.+++.+|.. ..+|+|+|+++.+++.|++|+..++
T Consensus 169 ~~~~sFfQvN~~---~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 169 ISPGSFFQVNPE---QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp EETTS---SBHH---HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ECCCcCccCcHH---HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 344455533322 235577888888877665 8999999999999999987 5799999999999999999999999
Q ss_pred CCCeEEEEeccCCCcc----------------c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 178 LQNVEIIVADISTFEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 178 ~~~v~~~~~d~~~~~~----------------~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++|++|+.++..++.. . ..+|+|+..||-.++. ..+++.+.+ +.-++++++
T Consensus 243 i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~~---~~~ivYvSC 310 (352)
T PF05958_consen 243 IDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIKK---LKRIVYVSC 310 (352)
T ss_dssp --SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHHH---SSEEEEEES
T ss_pred CCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHhc---CCeEEEEEC
Confidence 9999999987654311 1 2589999999988874 234444432 344455543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=94.62 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=85.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
+.+|||+.||+|..++.++.+.++ .+|+++|+|+.+++.+++|++.+++.++.+++.|+..+... .+||+|...+ +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 469999999999999999988543 58999999999999999999999887799999998875332 5799999987 4
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .+..+++.+.+.+++||.+++...
T Consensus 124 G---s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 G---TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CcHHHHHHHHHhcccCCEEEEEec
Confidence 2 335788899999999999999754
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=100.70 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe
Q 018346 109 TLEDAEKAMLELYCERSRL-------EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 181 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~-------~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v 181 (357)
.+.+.|...++.......+ ..+..+||||||.|.++..+|..+|+..++|+|++...+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 4555555555443332222 246789999999999999999999999999999999999999999888888899
Q ss_pred EEEEeccCCCc--c-ccCccEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 182 EIIVADISTFE--M-EASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 182 ~~~~~d~~~~~--~-~~~fD~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.++..|+..+. + ++++|.|+.+.+=-|... ...+++.+.+.|||||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99888875321 2 377999999887655421 36789999999999999998654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-08 Score=90.92 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--------------------------------c
Q 018346 107 SKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C 154 (357)
Q Consensus 107 ~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--------------------------------~ 154 (357)
..+|.+. +...++...+..++..++|--||+|.+++..|...++ +
T Consensus 172 ~ApLket---LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a 248 (381)
T COG0116 172 PAPLKET---LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERA 248 (381)
T ss_pred CCCchHH---HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHH
Confidence 3455554 4455667777778889999999999999998876531 1
Q ss_pred -------EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccch-------h-hHHHHHH
Q 018346 155 -------KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHM-------K-NYQNLLK 217 (357)
Q Consensus 155 -------~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~-------~-~~~~~l~ 217 (357)
.++|+|+++.+++.|+.|+...|+. .|+|.++|+..+..+ +.+|+||||+|+.-- . -+..+.+
T Consensus 249 ~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 249 RRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred hhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3779999999999999999999994 799999999988665 789999999998421 1 3455666
Q ss_pred HHHHhcccCceEEEEec
Q 018346 218 KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 218 ~~~~~LkpgG~l~~~~~ 234 (357)
.+.+.++--+..++.+.
T Consensus 329 ~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 329 TLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHhcCCceEEEEcc
Confidence 66677776677766544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-09 Score=85.80 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=57.9
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc---cC-ccEEEEccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEM 205 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~-fD~Ii~~~~ 205 (357)
..|+|+.||.|+.++.+|+. ..+|+++|+++..++.|+.|+...|+ ++|+|+++|+.+.... .. +|+|++++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 36999999999999999998 46899999999999999999999997 4999999999885432 22 899999998
Q ss_pred ccc
Q 018346 206 FEH 208 (357)
Q Consensus 206 ~~~ 208 (357)
..+
T Consensus 79 WGG 81 (163)
T PF09445_consen 79 WGG 81 (163)
T ss_dssp BSS
T ss_pred CCC
Confidence 754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-09 Score=97.83 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=108.6
Q ss_pred cCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEc
Q 018346 81 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 160 (357)
Q Consensus 81 y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD 160 (357)
++-...+++.+++-++..|++.|...+....+ .++..+-++++++.+..++|+.||||.++..+++. -.+|+|++
T Consensus 338 ~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~ae---vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvE 412 (534)
T KOG2187|consen 338 VGGDPYITESLLGLTFRISPGAFFQTNTSAAE---VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVE 412 (534)
T ss_pred EccccEEEeecCCeEEEECCchhhccCcHHHH---HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeee
Confidence 34445678888888888888777754444333 35566667788888999999999999999999987 57999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c---cCcc-EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 161 NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E---ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 161 ~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~---~~fD-~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++++.|++|+..+|+.|++|+++-.+++-. . ++-+ ++++.++--++. ..+++.+...-+|--.+++++
T Consensus 413 i~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 413 ISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--MKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred cChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCccccc--HHHHHHHHhccCccceEEEEc
Confidence 999999999999999999999999995555311 1 2345 666777655443 345555555544666666654
Q ss_pred cc
Q 018346 234 FC 235 (357)
Q Consensus 234 ~~ 235 (357)
..
T Consensus 491 n~ 492 (534)
T KOG2187|consen 491 NP 492 (534)
T ss_pred CH
Confidence 43
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=93.31 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
..+.+||.||+|.|..+..+++..+..+|+++|++++.++.+++.....+ -++++++.+|...... .++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999999876556789999999999999999875432 2489999999887532 26899999
Q ss_pred Eccccc---chh---hHHHHHH-HHHHhcccCceEEEEec
Q 018346 202 SIEMFE---HMK---NYQNLLK-KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~---~~~---~~~~~l~-~~~~~LkpgG~l~~~~~ 234 (357)
+...-. ..+ ...++++ .+.+.|+|||++++...
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 974210 001 1356787 89999999999887643
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-08 Score=99.25 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC----C--------------------------------------C
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S--------------------------------------N 153 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~----p--------------------------------------~ 153 (357)
+...++...+. .++..++|.+||+|.+.+..+... | .
T Consensus 177 lAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 177 LAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 44445555565 567899999999999999887531 1 1
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc---cCccEEEEcccccch----hhHHHHHHHHHHhcc-
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWMK- 224 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~Lk- 224 (357)
.+++|+|+++.+++.|++|+...|+. .|.|.++|+.+++.+ ++||+|++|+|+..- .+...+.+.+.+.|+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999985 699999999886543 469999999998533 234445555544444
Q ss_pred --cCceEEEEeccC
Q 018346 225 --EDTLLFVHHFCH 236 (357)
Q Consensus 225 --pgG~l~~~~~~~ 236 (357)
||+.+++.+...
T Consensus 337 ~~~g~~~~llt~~~ 350 (702)
T PRK11783 337 QFGGWNAALFSSSP 350 (702)
T ss_pred hCCCCeEEEEeCCH
Confidence 898888876644
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=91.41 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-------CCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEec
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVAD 187 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d 187 (357)
+.+.+++.+...++.+|+|.+||+|.+...+.+. .+...++|+|+++.++..|+.++.-.+.+ +..+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3444555566677889999999999999888763 25789999999999999999888766652 34688888
Q ss_pred cCCCccc---cCccEEEEcccccch--h-------------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 188 ISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 188 ~~~~~~~---~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
....+.. .+||+|++|+|+... . ..-.++..+.+.|++||++.+..|..
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 7654322 579999999998543 0 11247889999999999998887754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-08 Score=87.41 Aligned_cols=88 Identities=18% Similarity=0.356 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA- 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~- 195 (357)
.++.+++..++.++..|||||+|.|.+|..|++. +.+|+++|+++..++..++.... .+|++++.+|+....++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhh
Confidence 5677888888888999999999999999999998 67899999999999988887652 248999999999887764
Q ss_pred -CccEEEEcccccc
Q 018346 196 -SYDRIYSIEMFEH 208 (357)
Q Consensus 196 -~fD~Ii~~~~~~~ 208 (357)
.++.|++|.+++-
T Consensus 94 ~~~~~vVaNlPY~I 107 (259)
T COG0030 94 AQPYKVVANLPYNI 107 (259)
T ss_pred cCCCEEEEcCCCcc
Confidence 7899999999853
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-09 Score=87.84 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
....++|||||-|.+...+.... -.+++.+|-|..|++.++.. ...++ .+....+|-+.+++. +++|+|+++..+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 45689999999999999998874 35899999999999877653 23334 566777887777776 8899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+..+++..+.+|...|||+|.++.+.+...
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 999999999999999999999988777654
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=85.32 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=63.4
Q ss_pred HHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.+.- +++..|-|+|||.+.++..+.. ...|...|+-+. +-.++.+|+...|.+ ++.
T Consensus 62 ~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 62 VIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--TT-E
T ss_pred HHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCCCce
Confidence 34444433 3467999999999999865532 458999998553 224578999988877 889
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++|+..++-+. ++..++.++.|+|||||.|.|.....+
T Consensus 124 Dv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 124 DVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred eEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEeccc
Confidence 999998887655 788999999999999999999877554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=90.88 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.+|.+|+|+-+|.|.+++.+|+.. ...|+++|++|.+++..++|++.+++. .+..+++|..+.... +.+|.|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 368999999999999999999884 234999999999999999999999986 499999999998766 78999999876
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
- ....++..+.+.+++||++......+...
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 4 44567888888999999999988776554
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=92.82 Aligned_cols=158 Identities=21% Similarity=0.297 Sum_probs=119.1
Q ss_pred hhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEE
Q 018346 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 156 (357)
Q Consensus 77 ~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v 156 (357)
+..+|+...++|..-++..++.+ .+ .+.....+.....-....-+....++.+++|+|||.|....+++.. ..+.+
T Consensus 61 ~~~~y~~~~dl~~~~w~~~~h~~--~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~ 136 (364)
T KOG1269|consen 61 IAKYYNNSTDLYERNWGQSFHFG--RI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KKAGV 136 (364)
T ss_pred HHHHhcccchhhhhhhccchhcc--Cc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-ccCCc
Confidence 36889999899999888875553 22 2222222221111111122234457779999999999999999865 37899
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 157 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|.++..+..+.......+++ +..++.+|+...+++ +.||.+.+..+.+|.++....++++.++++|||..+...+
T Consensus 137 ~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 137 VGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 99999999998888877777664 556688888887776 8899999999999999999999999999999999999776
Q ss_pred cCCC
Q 018346 235 CHKT 238 (357)
Q Consensus 235 ~~~~ 238 (357)
....
T Consensus 217 i~~~ 220 (364)
T KOG1269|consen 217 IKTA 220 (364)
T ss_pred HHhh
Confidence 6543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=87.58 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCccc--cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~fD~Ii~ 202 (357)
..++||-||.|.|..+..+.+..+-.+++.|||++..++.+++.+.... -++++.+..|..++... .+||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3469999999999999999998777899999999999999999886654 35899999998875332 57999998
Q ss_pred cccccch-----hhHHHHHHHHHHhcccCceEEEE
Q 018346 203 IEMFEHM-----KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 203 ~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...=. . -.-..+++.+.+.|+|+|+++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 75432 1 12378999999999999999987
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=86.73 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=93.7
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cC
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-AS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~ 196 (357)
..+...++.+|||++++.|+=+..++...++ ..|+++|+|+.-+...++|+++.|+.++..+..|....+. . ++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 3456788999999999999999999988753 5679999999999999999999999888889988765432 1 35
Q ss_pred ccEEEEcccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||.|+...+-... .-..+++..+.++|||||.|+.++.+.
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 9999998765321 115679999999999999999987654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-08 Score=84.53 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHH-HHHHHHHcCCCCeE-EEEeccCC--
Q 018346 116 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF-IEEQCRVLELQNVE-IIVADIST-- 190 (357)
Q Consensus 116 ~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~-a~~~~~~~~~~~v~-~~~~d~~~-- 190 (357)
..+..+++..++ .++.+|||+|||+|.++..+++.. ..+|+|+|+++.++.. .+++. ++. +...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~------~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDE------RVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCC------CeeEeecCCcccCC
Confidence 355566666655 367899999999999999999873 4689999999988765 22211 221 22223332
Q ss_pred ---Cccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 191 ---FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 191 ---~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+ ..+|+++++. ..++..+.++|+| |.+++-
T Consensus 134 ~~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 134 PADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred HhHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 2111 3466655543 3358889999999 766553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8e-08 Score=80.94 Aligned_cols=102 Identities=25% Similarity=0.259 Sum_probs=80.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcC--------C--CCeEEEEeccCCCccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVEIIVADISTFEME 194 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~--------~--~~v~~~~~d~~~~~~~ 194 (357)
+.+|.+.||+|+|+|.++..++... ++..++|||.-++.++.+++|+...- + .++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5689999999999999999888553 34556999999999999999986543 1 2688999998875444
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+||.|.+...- ....+++...|+|||.+++-..
T Consensus 160 ~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccCc------cccHHHHHHhhccCCeEEEeec
Confidence 789999997543 3455677888999999988433
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=83.93 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 195 (357)
.++.+++..++.++..|||+|.|+|.++..+.+. +++|+++|+++.++....++...... ...+++.+|+...+. .
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c
Confidence 5667888889999999999999999999999998 88999999999999999988876554 378999999988654 3
Q ss_pred CccEEEEcccccc
Q 018346 196 SYDRIYSIEMFEH 208 (357)
Q Consensus 196 ~fD~Ii~~~~~~~ 208 (357)
.||.+|+|.+++-
T Consensus 123 ~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 123 RFDGCVSNLPYQI 135 (315)
T ss_pred ccceeeccCCccc
Confidence 6999999987743
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=80.88 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=93.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc--
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-- 194 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-- 194 (357)
..++..+.+.||.+|||-|+|+|.++.++++.. |-.+++..|......+.|++.++..+++ ++++...|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 346677788999999999999999999999886 7789999999999999999999999984 999999999875433
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCc-eEEEEeccCC
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCHK 237 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~ 237 (357)
..+|.|+.. ++.+...+..+.++||.+| +++-.+||.+
T Consensus 175 s~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 175 SLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred ccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 568888885 4466677788888998877 6655566554
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-07 Score=83.75 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++.+++.+...++..++|.-||.|+.+..+++..|+.+|+|+|.++.+++.++++....+ +++.++++++.++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHH
Confidence 5667777777788889999999999999999998866899999999999999999887653 389999999887531
Q ss_pred --c-cCccEEEEcc
Q 018346 194 --E-ASYDRIYSIE 204 (357)
Q Consensus 194 --~-~~fD~Ii~~~ 204 (357)
. .++|.|+.+.
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 4689888865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=85.81 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCCc--cc-cCcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFE--ME-ASYD 198 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~--~~-~~fD 198 (357)
...+.+.+|||.+.|-|..++..+++ ++ +|+.++.+|..++.|.-|--..++ .+|+++.+|..+.. ++ .+||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 44557999999999999999999988 66 999999999999888776433333 26899999988753 23 6799
Q ss_pred EEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+-.++--.. -...++.++++++|||||.++-.+-++
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 99998864333 235779999999999999987755433
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-08 Score=87.29 Aligned_cols=109 Identities=18% Similarity=0.109 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCccc--c-CccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~-~fD~I 200 (357)
+++.+||-||.|.|..+..+.+..+..++++||+++..++.+++.+.... -++++++.+|....... + +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36789999999999999999876545799999999999999999876532 24899999998764322 4 89999
Q ss_pred EEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+....-... -...++++.+.+.|+|||++++...+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 986543111 124689999999999999999977443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-07 Score=78.07 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-- 192 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~-- 192 (357)
++..+++.. .++++||||.=+|..+...|...| +.+|+++|++++..+.+.+..+..|++ +|++++++..+..
T Consensus 64 fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 64 FLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 444444443 578999999999999999998886 579999999999999999999999985 8999999877631
Q ss_pred ---c--ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 ---M--EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ---~--~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. .++||+++... +-.++...++++.+++++||++++.-
T Consensus 141 l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEec
Confidence 1 26899999863 22456688999999999999998853
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=78.16 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
+.+.++-..-.+++|||+|+|+|-.++..++.. ...|+..|+.|.....++-|++.+|+ +|.+...|... + +..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~-~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S-PPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-Cccee
Confidence 344444455578999999999999999988874 46899999999999999999999998 89999999876 2 36799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|+...++..-+...+++.-..++...|-.+++-++.+...
T Consensus 145 l~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 145 LLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred EEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 99999988777667777774444444555556556555443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-07 Score=79.30 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC--CCeEEEEec
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIVAD 187 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~-------~~~~--~~v~~~~~d 187 (357)
.+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|..... ..|. .++++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 4556777788889999999999999999988877644569999999998877765432 2333 378889999
Q ss_pred cCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 188 ISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 188 ~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.+.+.. ...|+|++|...-. ++....+.+....||||.+++.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8764321 45799999876422 3455566777778888887654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=81.39 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCccccCccEEEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
.+++++||=||.|.|..++.+.++ | .+|+.|||+++.++.+++..... +. ++++++. .+.+ ...++||+||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~-~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD-LDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh-ccCCcCCEEEE
Confidence 356799999999999999999976 4 49999999999999999965442 12 3777765 2222 11268999999
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
...+ .+.+++.+.+.|+|||.++.+.-+
T Consensus 146 Ds~~-----~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 146 LQEP-----DIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred cCCC-----ChHHHHHHHHhcCCCcEEEECCCC
Confidence 8543 367889999999999999986543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=91.01 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC--------CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----c-cc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p--------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~ 194 (357)
...+|||.|||+|.+...++...+ ...++|+|+++.++..++.++...+...+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999999887653 157899999999999999998776521344555553321 1 11
Q ss_pred cCccEEEEcccccchhh----------------------------------------------HHHH-HHHHHHhcccCc
Q 018346 195 ASYDRIYSIEMFEHMKN----------------------------------------------YQNL-LKKISKWMKEDT 227 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~----------------------------------------------~~~~-l~~~~~~LkpgG 227 (357)
+.||+|++|+|+..... +..+ ++.+.++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 57999999999864310 1113 356788999999
Q ss_pred eEEEEeccCC
Q 018346 228 LLFVHHFCHK 237 (357)
Q Consensus 228 ~l~~~~~~~~ 237 (357)
.+.+..|..-
T Consensus 191 ~~~~I~P~s~ 200 (524)
T TIGR02987 191 YVSIISPASW 200 (524)
T ss_pred EEEEEEChHH
Confidence 9999888653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=82.10 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=74.9
Q ss_pred HHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.+.. .....|-|+|||.+.++. .. ...|+..|+-+. +-+++.+|+...|.+ ++.
T Consensus 170 ~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccCcc
Confidence 34444433 356789999999998876 22 347999998443 556788999998877 899
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++|+..++.+ .+...++.++.++|+|||.++|.....+
T Consensus 230 DvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 230 DVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred cEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 99998877644 4788999999999999999999876543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=84.24 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-CCCEEEEECCccc--HHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE
Q 018346 108 KTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGWG--SLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~-~~~~vLDiGcG~G--~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~ 183 (357)
..+....+..+...++.+... .-...||||||-- .....+++. .|+++|+-+|++|..+..++..+....-....+
T Consensus 46 ~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~ 125 (267)
T PF04672_consen 46 REAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAY 125 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEE
Confidence 344555566677666665444 4467999999943 355556554 589999999999999999998876653223899
Q ss_pred EEeccCCCcc-----c--cCcc-----EEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCc
Q 018346 184 IVADISTFEM-----E--ASYD-----RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248 (357)
Q Consensus 184 ~~~d~~~~~~-----~--~~fD-----~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 248 (357)
+++|+.+... . +-+| .|+...++|++ +++..+++.+...|.||+.|+++..+....+.... ..
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~--~~ 203 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAE--AL 203 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHH--HH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHH--HH
Confidence 9999987320 1 2344 67888899998 45889999999999999999999887754332110 00
Q ss_pred cchhhhcccCCCCCCCHHHHHhhcCCcEEEE
Q 018346 249 DDWITKYFFTGGTMPSANLLLYFQDDVSVVD 279 (357)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 279 (357)
.....+ -......-+.+.+..|.++++.++
T Consensus 204 ~~~~~~-~~~~~~~Rs~~ei~~~f~g~elve 233 (267)
T PF04672_consen 204 EAVYAQ-AGSPGRPRSREEIAAFFDGLELVE 233 (267)
T ss_dssp HHHHHH-CCS----B-HHHHHHCCTTSEE-T
T ss_pred HHHHHc-CCCCceecCHHHHHHHcCCCccCC
Confidence 011111 112234567778888888877654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-06 Score=77.21 Aligned_cols=149 Identities=7% Similarity=0.017 Sum_probs=97.7
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC----C
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----S 152 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----p 152 (357)
.-|||. +.+.|+....-. .||.. ... ..........+...+ .++..|+|+|||+|.-+..|.+.+ .
T Consensus 33 k~~YD~~Gs~LFe~It~lp-----EYYpt-r~E-~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~ 103 (319)
T TIGR03439 33 LLLYDDEGLKLFEEITYSP-----EYYLT-NDE-IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKK 103 (319)
T ss_pred HhhhcchHHHHHHHHHcCC-----ccCCh-HHH-HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCC
Confidence 567754 566787776543 23321 111 111122233444443 466799999999999887776654 2
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCCCe--EEEEeccCCC----cc---ccCccEEEEcc-cccch--hhHHHHHHHHH
Q 018346 153 NCKITGICNSKTQKEFIEEQCRVLELQNV--EIIVADISTF----EM---EASYDRIYSIE-MFEHM--KNYQNLLKKIS 220 (357)
Q Consensus 153 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v--~~~~~d~~~~----~~---~~~fD~Ii~~~-~~~~~--~~~~~~l~~~~ 220 (357)
...++++|+|.++++.+.+++.....+.+ .-+++|..+. +. .....+++..+ ++.++ +....+++.++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~ 183 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFL 183 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHH
Confidence 46899999999999999999884444444 4488888652 11 13356666654 67777 34567899999
Q ss_pred H-hcccCceEEEEecc
Q 018346 221 K-WMKEDTLLFVHHFC 235 (357)
Q Consensus 221 ~-~LkpgG~l~~~~~~ 235 (357)
+ .|+|||.+++..-.
T Consensus 184 ~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 184 ATALSPSDSFLIGLDG 199 (319)
T ss_pred HhhCCCCCEEEEecCC
Confidence 9 99999999986543
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=80.67 Aligned_cols=109 Identities=22% Similarity=0.228 Sum_probs=72.1
Q ss_pred HHHHHHHHcC-CC--CCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc
Q 018346 117 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 192 (357)
Q Consensus 117 ~l~~l~~~~~-~~--~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~ 192 (357)
++.++.+..+ +. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ....++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 4556666666 44 34899999999999999999885 4589999999876 11236666677765421
Q ss_pred --------cc---cCccEEEEccccc-----------chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 --------ME---ASYDRIYSIEMFE-----------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 --------~~---~~fD~Ii~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.. .++|+|+|..... ...-....+.-+...|+|||.+++..+..
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 01 4799999988321 11223445556667899999999977753
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=80.09 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=91.8
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c-cCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E-ASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~-~~fD~I 200 (357)
+...++.+|||++++.|+-+..++...+ ...+++.|+++.-+...++++.+.|..++.....|...... . ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 4567889999999999999999998875 57999999999999999999999999889988888776522 1 459999
Q ss_pred EEcccccch----------------------hhHHHHHHHHHHhc----ccCceEEEEeccC
Q 018346 201 YSIEMFEHM----------------------KNYQNLLKKISKWM----KEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----------------------~~~~~~l~~~~~~L----kpgG~l~~~~~~~ 236 (357)
+...+-... .-..++++.+.+.+ ||||+++.++-+.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 997754222 11567899999999 9999999887654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-06 Score=67.11 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=75.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHH-----HCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCeEEEEeccCCCccccCcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~-----~~p~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~fD 198 (357)
..+...|+|+|||.|.++..|+. . ++.+|+++|.++..++.+.++.+..+ . +++.+..++..+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 35678999999999999999998 4 68899999999999999999988776 3 46777777766543335667
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.-..-..+ ...+++.+.+ |+-..++..|+-
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEEcCCc
Confidence 88875544433 2345555444 666666655553
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=76.04 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
...+.++-.+.+.-.+.+|||+|||.|.-+-.+...++. .+++++|.|+.+++.++..+...... ...+......+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 345555555554446689999999999877777766653 48999999999999998876544221 1111111111111
Q ss_pred cccCccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 MEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.-.+.|+|++..++..+++ ...+++.+.+.+.+ .|++..++.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 1134599999999988854 45567777666655 77777666543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=77.58 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEEeccCCC-----cc-ccCccEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADISTF-----EM-EASYDRIY 201 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~~d~~~~-----~~-~~~fD~Ii 201 (357)
..++||||||..++=-.|..+..+++++|+|+++..++.|++++..+ ++. +|+++...-... .. .+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 56899999998876444433333899999999999999999999998 774 888876643221 11 16799999
Q ss_pred Ecccccch
Q 018346 202 SIEMFEHM 209 (357)
Q Consensus 202 ~~~~~~~~ 209 (357)
||++++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99999765
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=78.67 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
-...+|+|.|.|.++..+...+|. |-+++.+...+..++.... . .|+.+.+|+.... .+-|+|++-.++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~--P~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDT--PKGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---CcceecccccccC--CCcCeEEEEeecccC
Confidence 478999999999999999998875 5666666666665655543 3 4788899988752 245899999999999
Q ss_pred --hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 210 --KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 210 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++..+++++|+..|+|||.+++.....+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 5688999999999999999999776433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-07 Score=79.41 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-----cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-----~~fD~Ii~ 202 (357)
....|+|.-||.|+.++..+.. +..|+++|++|.-+..|+.|++..|++ +|+|+++|+.++-.. ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999988 569999999999999999999999995 999999999875321 34678888
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.++..+-.....-+-.+...++|.|.-++
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~~f 200 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTKIF 200 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHHHH
Confidence 88876655455555566667777755433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-06 Score=75.58 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
...+.+++.+++.++..|||+|+|.|.++..|++. +.+++++|+++..++..++.... .++++++.+|+.++....
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHH
Confidence 46677888888888999999999999999999988 48999999999998888886652 248999999999876543
Q ss_pred ----CccEEEEcccccchhhHHHHHHHHHH
Q 018346 196 ----SYDRIYSIEMFEHMKNYQNLLKKISK 221 (357)
Q Consensus 196 ----~fD~Ii~~~~~~~~~~~~~~l~~~~~ 221 (357)
....|++|.++ ++ ...++.++..
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~ 119 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLE 119 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHH
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhh
Confidence 56789999887 33 2445555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-07 Score=86.97 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=66.9
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEE---cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGI---CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~v---D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
..+||+|||+|.++.+|.++ +..+..+ |..+.+++.|.+ .|++-+ +-..-...+|++ +.||+|-|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----RGvpa~-~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----RGVPAM-IGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----cCcchh-hhhhccccccCCccchhhhhccccc
Confidence 47999999999999999987 5444333 333344444433 344211 111112346666 889999999888
Q ss_pred cch-hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHM-KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
..+ ++-..++-++-|+|+|||+++.+.+...
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 665 3334578889999999999999876543
|
; GO: 0008168 methyltransferase activity |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=65.96 Aligned_cols=105 Identities=22% Similarity=0.347 Sum_probs=75.3
Q ss_pred EEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC--Ccccc--CccEEEEccccc
Q 018346 133 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 207 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~--~fD~Ii~~~~~~ 207 (357)
++|+|||+|... .++...+. ..++++|+++.++..++......+...+.+...|... .++.. .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 44443322 4899999999999885554433211116888888775 45443 799994444444
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.. ....+..+.+.|+|+|.+++........
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 444 7889999999999999999987765543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=71.27 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=79.6
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch-
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM- 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~- 209 (357)
..+.|+|+|+|.++...++. ..+|++++.+|...+.|.+|..-.|..|++++.+|+.+..+ ...|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999998876 568999885421111
Q ss_pred -hhHHHHHHHHHHhcccCceEEE
Q 018346 210 -KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 210 -~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+..-..+..+...|+.++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 3345567777778898888754
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=77.88 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++++++.+...++..++|.--|.|+.+..+++.+|+++++|+|.++.+++.|+++..... +++.++.+++.++..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHH
Confidence 4566777777888899999999999999999999988999999999999999988776543 389999999887531
Q ss_pred ---c-cCccEEEEcc
Q 018346 194 ---E-ASYDRIYSIE 204 (357)
Q Consensus 194 ---~-~~fD~Ii~~~ 204 (357)
. .++|-|+...
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 1 4688888765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-06 Score=77.50 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC---------------------------C-CC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------------L-QN 180 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~---------------------------~-~~ 180 (357)
++.++||||||.-..-..-+..+ -.+++..|.++...+..++.++..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 56799999999854432222221 2479999999998887766553322 0 01
Q ss_pred e-EEEEeccCCCcc-------ccCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 181 V-EIIVADISTFEM-------EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 181 v-~~~~~d~~~~~~-------~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
| .++.+|+...++ +.+||+|++..+++.. +.+.+.++++.++|||||.|++...-
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 3 477889887432 1349999999998766 56888999999999999999997653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=68.48 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.+.++.++..+ .++.+|+|||+..|+.+..+++.. ++..|+|+|+.|-. ...+|.++++|++....
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHH
Confidence 44455555544 578999999999999999999886 33569999997751 22479999999987431
Q ss_pred -------c-cCccEEEEcccc--------cch---hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 194 -------E-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 194 -------~-~~fD~Ii~~~~~--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
. .++|+|+|...- +|. .-....++-+..+|+|||.+++-.+....
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 1 347999987633 222 12345667778899999999998775543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=68.01 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=76.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~f 197 (357)
+...+.++.+||-+|.++|.....++.-. |...|++|+.|+......-..++.. +||--+..|+..... -+..
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--E
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccc
Confidence 34567899999999999999999998765 4789999999997766555544444 389999999986321 1679
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|++.-. .-+..+-++.++...||+||.+++..-
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 99998644 223445677888899999999998764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.6e-06 Score=67.98 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=54.0
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
+|+|+|||.|..+..+++..|..+|+++|+++.+.+.++++++.++.++++++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999988889999999999999999999988877788888877653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-05 Score=69.69 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
++.++++.+.+.++...+|.--|.|+.+..+.+.+|+ .+++|+|-++.+++.|++.....+- ++++++.++.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-r~~~v~~~F~~l~~~l 89 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-RVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-cEEEEeCcHHHHHHHH
Confidence 5677888888888999999999999999999999864 5799999999999999999887663 89999998776421
Q ss_pred ---c-cCccEEEEc
Q 018346 194 ---E-ASYDRIYSI 203 (357)
Q Consensus 194 ---~-~~fD~Ii~~ 203 (357)
. +++|-|+..
T Consensus 90 ~~~~i~~vDGiL~D 103 (314)
T COG0275 90 KELGIGKVDGILLD 103 (314)
T ss_pred HhcCCCceeEEEEe
Confidence 1 456666654
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=68.40 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=69.4
Q ss_pred EEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccchh
Q 018346 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~ 210 (357)
|.||||-.|.++++|.++....+++++|+++.-++.|++++...|+ ++|++..+|-.+...+ +..|.|+..++=. .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--E 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--H
Confidence 6899999999999999986555899999999999999999999987 4899999997653223 3479888876522 2
Q ss_pred hHHHHHHHHHHhcccCceEEEEe
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+++.....++....+++..
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC
Confidence 34566666666665555666643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-06 Score=76.85 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=79.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
..+..++|+|||.|.... ..|.+.++|.|++...+..+++. +. ....+|+..++.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 357899999999998753 33788999999999877666542 33 5778899888766 78999999999
Q ss_pred ccchh---hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 206 FEHMK---NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 206 ~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+. -...+++++.+.|+|||...+.....
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 99993 35678999999999999988866554
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.2e-06 Score=71.07 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEEccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 205 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~~~~ 205 (357)
..++|||||=+......- .+-..|+.||+++. .-.+.+.|+.+.|.+ ++||+|+++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 379999999765544332 22457999999874 234477888776542 78999999999
Q ss_pred ccchhhH---HHHHHHHHHhcccCce-----EEEEeccC
Q 018346 206 FEHMKNY---QNLLKKISKWMKEDTL-----LFVHHFCH 236 (357)
Q Consensus 206 ~~~~~~~---~~~l~~~~~~LkpgG~-----l~~~~~~~ 236 (357)
+.+++++ -+.++++.++|+|+|. +++..|.+
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 9999765 4589999999999999 88877754
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.3e-06 Score=71.39 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred HHHHHcCCCCCC--EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc------C--C-CCeEEEEecc
Q 018346 120 LYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVADI 188 (357)
Q Consensus 120 ~l~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~------~--~-~~v~~~~~d~ 188 (357)
.+++..+++++. +|||+-+|+|..+..++.. +++|+++|-|+......+.++... + + .+++++.+|.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 355556777776 9999999999999999988 889999999999999988888774 2 2 4789999998
Q ss_pred CCCcc--ccCccEEEEcccccch
Q 018346 189 STFEM--EASYDRIYSIEMFEHM 209 (357)
Q Consensus 189 ~~~~~--~~~fD~Ii~~~~~~~~ 209 (357)
.+... ..+||+|+..+++.+-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 76532 2579999999998664
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=70.61 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---CCCCeEEEEeccCCCc--cc
Q 018346 121 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---ELQNVEIIVADISTFE--ME 194 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~~~--~~ 194 (357)
+++..+.-.+.+||++|.| +|--++.+|...|...|..+|-+.+.++..++-...+ +++++..+.-+..... ..
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 4443334457899999999 4555666676678889999999999988777655443 2233433333332211 11
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..||+|++..++-.-+....+++.+..+|+|.|..++..|-+
T Consensus 101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 589999999987555667788999999999999988766643
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=63.58 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-ccc--cC
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME--AS 196 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~--~~ 196 (357)
.+.++..+ .|++||-+|=.. ..+++++...+..+|+.+|+++..++..++.+++.|+ +|+.+..|+... |.. ++
T Consensus 36 ~~~~~gdL-~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGDL-EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-
T ss_pred HHHhcCcc-cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcC
Confidence 34444333 578999998433 4455555555578999999999999999999999999 599999999874 322 88
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCc-eEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~ 233 (357)
||++++.++. ..+...-++.+....||..| ..++..
T Consensus 113 fD~f~TDPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 113 FDVFFTDPPY-TPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp BSEEEE---S-SHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred CCEEEeCCCC-CHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 9999999986 45677889999999998766 544433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-05 Score=68.81 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=66.2
Q ss_pred CCEEEEECCcccHHH-HHHHHH-CCCcEEEEEcCCHHHHHHHHHHHH-HcCC-CCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLS-LYIAQK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~-~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~-~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
+.+|+=||||.=-++ +.+++. .++..|+++|+++++++.+++.+. ..++ .++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999965544 445544 367899999999999999998877 3444 3899999999876544 6899998776
Q ss_pred cccc-hhhHHHHHHHHHHhcccCceEEEE
Q 018346 205 MFEH-MKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 205 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.... -.+..+++..+.+.++||+.+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5532 257789999999999999998885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.7e-05 Score=68.25 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=77.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH---cC----------------------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LE---------------------------- 177 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~---~~---------------------------- 177 (357)
...+||--|||.|.++..+|.. +..+.|.|.|--|+-...-.+.. .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4679999999999999999988 88999999999886543332111 00
Q ss_pred ---------CCCeEEEEeccCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcccCceEE
Q 018346 178 ---------LQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 178 ---------~~~v~~~~~d~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
..++....+|+.+.-.+ ++||+|++..-++..++.-..++.+.++|||||..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 12466777787765322 589999999888888899999999999999999543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.3e-05 Score=71.93 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=66.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~ 206 (357)
.++.++|||||++|+.+..++++ +++|++||.++- ...+... ++|.....|.....+ .+.+|.++|..+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhCC--CCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 57899999999999999999988 779999996653 1222222 389999999877654 4789999997663
Q ss_pred cchhhHHHHHHHHHHhcccC
Q 018346 207 EHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~Lkpg 226 (357)
.+.++.+.+.+.|..|
T Consensus 281 ----~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ----KPARVAELMAQWLVNG 296 (357)
T ss_pred ----CHHHHHHHHHHHHhcC
Confidence 4667777777777555
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.8e-05 Score=72.37 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=92.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~I 200 (357)
+..+++.+|||+++..|+-+.++|....+ ..|++.|.+..-+...+.|+...|+++......|..+++. +++||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 34578999999999999999888876533 5899999999999999999999999888889999887652 2589999
Q ss_pred EEcccccc--h--------------------hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEH--M--------------------KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~--~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+...+-.+ + .-.++++..+.++++|||+|+.++.+..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 98776544 1 1146788889999999999999876653
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-06 Score=65.83 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.4
Q ss_pred EEECCcccHHHHHHHHHCCC---cEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cc-cCccEEEEcccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 206 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~---~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~fD~Ii~~~~~ 206 (357)
||+|+..|..+..+++..+. .+++++|..+. .+.+++.+++.++ ++++++.+|..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999998876533 27999999985 3334444444444 38999999987642 22 68999998864
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223456677888999999999998854
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.4e-05 Score=66.15 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=78.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCccc
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~ 194 (357)
.+...++...+ .++..+||+|+.||+++..+.++. ..+|+|+|....++..--++- ++| .+...|+..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d-----~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRND-----PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcC-----CcEEEEecCChhhCCHH
Confidence 44455565555 368899999999999999999884 469999999988765443321 243 3444455554322
Q ss_pred ---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+++|.-++. ....++..+..+++|+|-++.-.
T Consensus 140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence 5689999988776 45788999999999999877643
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-05 Score=62.86 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=78.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~Ii~~~ 204 (357)
.++.+||.+|-|-|.+...+.+.-|. +-+-++..|+.++..+...-... .||..+.+-+.+.. +.+.||-|+-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEeec
Confidence 46889999999999999988877554 55678999998877766543222 37888888766642 236799998876
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
--++.++...+.+.+.++|||+|++-.
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 556778889999999999999998644
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=60.79 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=80.8
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDR 199 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~ 199 (357)
..++.++.+||-+|..+|....+++.-.+...+++|+.|+......-..+.+. +|+--+..|+..... -+..|+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccE
Confidence 45678999999999999999999998876678999999998876665555543 388889999886321 167899
Q ss_pred EEEcccccchhhH-HHHHHHHHHhcccCceEEEEec
Q 018346 200 IYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 200 Ii~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+..-.- ++. +-+..++...||+||.+++..=
T Consensus 149 iy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 149 IYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred EEEecCC---chHHHHHHHHHHHhcccCCeEEEEEE
Confidence 8875321 333 4457778999999998777654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=66.57 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHH--Hc--C-C--CCeEEEEeccCCCccc--cCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCR--VL--E-L--QNVEIIVADISTFEME--ASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~--~~--~-~--~~v~~~~~d~~~~~~~--~~f 197 (357)
+...+||-+|.|.|--+..+.+ +| -.+++-+|++|++++.++++.. .. | . ++++++..|..++... +.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3557899999999999999884 67 4599999999999999985432 21 1 1 3899999998886433 789
Q ss_pred cEEEEcccccchh-----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|.||...+=..-+ ...++..-+.+.|+++|.++++..++
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9999865321111 23567788899999999999976544
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=63.45 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=74.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-------CCCeEEEEeccCCCccc----cCc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 197 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~----~~f 197 (357)
....+.|||||-|.+.+.|+..+|+.-+.|.+|-...-++.++++.... ..|+.+...+.....+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3467999999999999999999999999999999888888888876654 34677777666554221 222
Q ss_pred cEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+-.+...+--|+.. ...++.+..-+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222223211 24567788889999999988654
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.7e-05 Score=66.85 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.+.++||+|+|.|.++..++..+ .+|++.++|..|....++ .+. ||-- ..+..+. .-+||+|.|-..++-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nVl~-~~ew~~t--~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NVLT-EIEWLQT--DVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-ceee-ehhhhhc--CceeehHHHHHHHHh
Confidence 45799999999999999988764 479999999998665544 333 3211 1122111 136999999999887
Q ss_pred hhhHHHHHHHHHHhccc-CceEEEEec
Q 018346 209 MKNYQNLLKKISKWMKE-DTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 234 (357)
-.++-++++.++.+|+| +|++++...
T Consensus 182 c~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 77889999999999999 899887654
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=60.03 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcC----------------
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLE---------------- 177 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~---------------- 177 (357)
++++..+..+.-..+.+++|-+||+|.+.-.+.-..+. ..|+|.|+++++++.|++|..-..
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 34444444444456789999999999988877765433 489999999999999998763210
Q ss_pred --------------------------CCCeEEEEeccCCCcc------ccCccEEEEcccccchh---------hHHHHH
Q 018346 178 --------------------------LQNVEIIVADISTFEM------EASYDRIYSIEMFEHMK---------NYQNLL 216 (357)
Q Consensus 178 --------------------------~~~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~~---------~~~~~l 216 (357)
.......+.|+++... ....|+|+...++..+. ....++
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 1246678888887321 13479999999886652 256789
Q ss_pred HHHHHhcccCceEEE
Q 018346 217 KKISKWMKEDTLLFV 231 (357)
Q Consensus 217 ~~~~~~LkpgG~l~~ 231 (357)
..+.++|.+++++.+
T Consensus 198 ~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 198 NSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHCCS-TT-EEEE
T ss_pred HHHHhhCCCCcEEEE
Confidence 999999955555555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=63.92 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.++.+... +.++.+|+|||||.--++.......|++.++|+||+..+++.........+. +.++...|+...+++..
T Consensus 95 fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~ 171 (251)
T PF07091_consen 95 FYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEP 171 (251)
T ss_dssp HHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSE
T ss_pred HHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCC
Confidence 44444432 2357899999999999998887776788999999999999999999888887 78888889887665577
Q ss_pred ccEEEEcccccchh
Q 018346 197 YDRIYSIEMFEHMK 210 (357)
Q Consensus 197 fD~Ii~~~~~~~~~ 210 (357)
.|+.+.-=+++-++
T Consensus 172 ~DlaLllK~lp~le 185 (251)
T PF07091_consen 172 ADLALLLKTLPCLE 185 (251)
T ss_dssp ESEEEEET-HHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 99999877776664
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00059 Score=67.09 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 191 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~ 191 (357)
..+.+++.+...+..+|+|..||+|++.....+... ...++|.|+++.....++.|+--.|++ ++....+|...-
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence 444555556556777999999999998877765541 267999999999999999999888885 355666665443
Q ss_pred cc-----c-cCccEEEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 192 EM-----E-ASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 192 ~~-----~-~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+. . ..||.|++|+++... .....++..+...|+|||+..+..+..-..
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlf 332 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLF 332 (489)
T ss_pred CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCc
Confidence 21 1 569999999998410 012678999999999999877776655433
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=60.50 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHH----HHHHHH--HHHcCCCCeEEEEeccCCCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK----EFIEEQ--CRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l----~~a~~~--~~~~~~~~v~~~~~d~~~~~~ 193 (357)
++...+++++.+|+|+=.|.|.++..++... |...|++.-..+... +..+.+ ..+....|++.+-.+...+..
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 4445677899999999999999999998765 555788765433211 111111 111222356666666555554
Q ss_pred ccCccEEEEcccccch-------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 EASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++..|+++.+..+|.+ .....+...+.+.|||||++++++.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 4678888877666544 2356788899999999999998654
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=56.95 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc-cccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-MEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~fD~Ii~~~~~ 206 (357)
.+.++.||||-.|.+..+|.+..+...+++.|+++..++.|.+++...++ ++++...+|..... ....+|+|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 55669999999999999999998888999999999999999999999987 48888999886532 22579998887653
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
. .-...++++-...|+.=-++++
T Consensus 96 G--~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 96 G--TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred H--HHHHHHHHHhhhhhcCcceEEE
Confidence 2 2345667776666664445555
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00074 Score=54.26 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=59.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--c-cCccEEEEcccccc-----h----hhHHHHHHHHHH
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-ASYDRIYSIEMFEH-----M----KNYQNLLKKISK 221 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~-~~fD~Ii~~~~~~~-----~----~~~~~~l~~~~~ 221 (357)
+|+|+||-+++++.++++..+.+.. +++++..+-..+.. + +++|+++.|..+-- + ......++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6899999999999999999999874 79999988766542 2 37999999864411 1 234668899999
Q ss_pred hcccCceEEEEecc
Q 018346 222 WMKEDTLLFVHHFC 235 (357)
Q Consensus 222 ~LkpgG~l~~~~~~ 235 (357)
+|+|||.+.+....
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999887653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=62.10 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCEEEEECCcccHHHHHHHH-HCCCcEEEEEcCCHHHHHHHHHHHHHc-CCC-CeEEEEeccCCCcc------ccCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADISTFEM------EASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~-~~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~-~v~~~~~d~~~~~~------~~~fD~ 199 (357)
++.++||||.|.-++=-.+-- .+ +.+.+|.|+++.+++.|+..+..+ ++. .|+.....-.+..+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 567899999988765433322 23 789999999999999999998877 443 45555443222111 167999
Q ss_pred EEEcccccch
Q 018346 200 IYSIEMFEHM 209 (357)
Q Consensus 200 Ii~~~~~~~~ 209 (357)
+.||+++|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999865
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=57.80 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=75.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CC-CeEEEEeccCCCcc----ccC-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQ-NVEIIVADISTFEM----EAS-Y 197 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~-~v~~~~~d~~~~~~----~~~-f 197 (357)
...+||++|+|+|-.++..+... +++|+..|+.. .++....+...++ .. .+.....++...+. ... +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998887777654 78999999844 4444444432222 11 45555555554221 134 8
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|++..++.....+..++..+...|..+|.+++...-++
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888899999999999997777666444
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0021 Score=61.48 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=81.4
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~ 209 (357)
.++|-+|||.-.++..+-+.+ ...|+.+|+|+..++.+...-. ...+-..+...|+....++ ++||+|+.-+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 399999999998888887663 3579999999999887766543 2223688999999988777 899999999988876
Q ss_pred -h---------hHHHHHHHHHHhcccCceEEEEec
Q 018346 210 -K---------NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 210 -~---------~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .....+.+++++|+|||+.+..+.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 1 134567889999999999877666
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00034 Score=63.58 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHH-------HHHHHHHHcCC-C-CeEEEEeccCCCccc-
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 194 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~-------~a~~~~~~~~~-~-~v~~~~~d~~~~~~~- 194 (357)
....+|.-|+|--.|||++....+.- |+.|+|.||+-.++. ..+.|+++.|. + -+.++.+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 44578999999999999999888855 899999999998876 35677888875 2 467788898875543
Q ss_pred -cCccEEEEccccc------------------------chh---------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFE------------------------HMK---------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~------------------------~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..||.|+|.+++. |.+ -...++.-..+.|..||++++-.|+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 5799999999871 111 13456677788999999999876643
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=54.57 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=67.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCc--------cc-cC
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE--------ME-AS 196 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~--------~~-~~ 196 (357)
.++.+|||+||..|..+....++. |...|.|||+-.- .....++++++ |+.+.. .+ .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 578999999999999999888776 8899999998432 11224556666 666531 12 56
Q ss_pred ccEEEEcccccc----hhhHHH-------HHHHHHHhcccCceEEEEeccCCC
Q 018346 197 YDRIYSIEMFEH----MKNYQN-------LLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 197 fD~Ii~~~~~~~----~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.|+|+|...-.. +.|... ++.-....++|+|.++.-......
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 899998753211 123333 333345567899999998775543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=56.25 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc---------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--------- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--------- 194 (357)
++..|+|+|.-.|+.++..|.. + +.++|+|+|++...... +..+.... ++|+++++|..+...-
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 5689999999999988887653 3 56899999996543221 11122222 4899999998764210
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
....+|+. .+-|...+..+.++....+++||+++++++..
T Consensus 110 ~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 110 PHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp -SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred CCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 12234443 33333356677888899999999999997654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=60.80 Aligned_cols=103 Identities=21% Similarity=0.157 Sum_probs=80.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
..+|+|.=||+|.=++.++...+..+|+.-|+||.+++.+++|+..+...+...+..|...+... ..||+|=..+ +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP-F- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP-F- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC-C-
Confidence 67999999999999999998886669999999999999999999988433566666787765433 6789765443 3
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..+..+++.+.+.++.||.+.+.....
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 245667888888889999998865433
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=62.79 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCc--cccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~--~~~~fD~Ii~~ 203 (357)
.+.+|||.=+|+|.=++..+.+.++ .+|++-|+|+++++.+++|++.++++ .+++.+.|+..+- ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4579999999999999999988644 58999999999999999999999985 4888888987753 23779987665
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+ + ..+..+++.+.+.++.||.|.+....
T Consensus 129 P-f---GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 P-F---GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --S---S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred C-C---CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 3 2 35577899999999999999996554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0003 Score=56.71 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 195 ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
++.|+|++..+++|+ +.-..+++++++.|||||++-+..|.-..
T Consensus 46 ns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 789999999999999 55677899999999999999998876543
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0045 Score=57.26 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=81.0
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCC----cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+++.++.+|||+++..|+-+..+.+.... ..|++-|.++.-+...+.........++.+...|+...+.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 46789999999999999999888876422 3899999999988887777755444455555555543321
Q ss_pred --c-cCccEEEEcccccc----------------------h-hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 194 --E-ASYDRIYSIEMFEH----------------------M-KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~~~----------------------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. ..||-|++.-+-.+ + .-...++.+..++||+||.++.++-+-.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1 46999998654311 0 1135688899999999999998876543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=59.12 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC----CCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFE 192 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~----~~~ 192 (357)
+..+-...+.-.+.+|||+|.|.|.-+.++-..+|.. .++.++.|+..-+...............+...|+. +++
T Consensus 102 L~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 102 LDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 3333333333356789999999998887777777764 67788888875554444333322222223333332 233
Q ss_pred cccCccEEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 MEASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
....|++|+...-+-+. ......++.+..++.|||.+++..++.+.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 33556766654433333 12344789999999999999998876543
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0039 Score=49.95 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 195 (357)
.++.++..+.-.+..+.+|+|+|.|.+....++.. -..-+|++++|-.+.+++-.+-..|.. ...|..-|+......
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR- 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-
Confidence 44455666666666799999999999999888773 357899999999999998887777763 788999998876543
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.|..|+...+-.-+++ +-.++..-+..|..++.-
T Consensus 138 dy~~vviFgaes~m~d---Le~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPD---LEDKLRTELPANTRVVAC 171 (199)
T ss_pred ccceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEE
Confidence 3444444333222232 334455456666666553
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.13 Score=48.12 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=61.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHH--------C--------CCcEEEEEcCCHHHHHHHHHHHHHc-----CCCC--eE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----ELQN--VE 182 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~--------~--------p~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~--v~ 182 (357)
......+|+|+||.+|..++.+... + |..+|+--|+-..-....-+.+... ...+ +.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3456679999999999988776432 1 2257888886443222221211111 0112 33
Q ss_pred EEEeccCCCccc-cCccEEEEcccccchhh---------------------------------------HHHHHHHHHHh
Q 018346 183 IIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNLLKKISKW 222 (357)
Q Consensus 183 ~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~---------------------------------------~~~~l~~~~~~ 222 (357)
-+-+.+..-.++ ++.|+++|..++||+.. ...+|+.=.+-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 344555553334 88999999998877611 12233333455
Q ss_pred cccCceEEEEeccCCC
Q 018346 223 MKEDTLLFVHHFCHKT 238 (357)
Q Consensus 223 LkpgG~l~~~~~~~~~ 238 (357)
|+|||++++..++...
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8899999999998877
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=55.14 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=50.7
Q ss_pred HHHHcCCCCC--CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH---HHHcC-C-----CCeEEEEeccC
Q 018346 121 YCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLE-L-----QNVEIIVADIS 189 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~---~~~~~-~-----~~v~~~~~d~~ 189 (357)
+++..++.++ .+|||.-+|.|.-+..++.. |++|+++|-||-.....+.- +.... . .+++++.+|..
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 4455566655 48999999999999999876 88999999999765544433 22211 1 37999999988
Q ss_pred CCcc--ccCccEEEEcccccc
Q 018346 190 TFEM--EASYDRIYSIEMFEH 208 (357)
Q Consensus 190 ~~~~--~~~fD~Ii~~~~~~~ 208 (357)
+... .++||+|+..++|.+
T Consensus 143 ~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CHCCCHSS--SEEEE--S---
T ss_pred HHHhhcCCCCCEEEECCCCCC
Confidence 7422 378999999999865
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0089 Score=55.40 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=69.0
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-cCCCc-cccCccE
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFE-MEASYDR 199 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-~~~~~-~~~~fD~ 199 (357)
+..+..++.+|+=+|+| .|.+++.+|+.. +++|+++|.|++-.+.|++. |.+ .++... ..... ..+.||+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhHhhCcE
Confidence 34567789999999887 567899999877 79999999999977776653 432 223322 11111 1144999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+..-+ ...+....+.|++||.+++.-..
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 998654 34567777899999999886443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=54.83 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~f 197 (357)
+.+.++++.+||-+|+++|.....+..-. |..-|++++.|+..=.....-+++. +||.-+.-|+..... . ...
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 34557899999999999999888887654 7779999999886533222222211 377778888876321 1 567
Q ss_pred cEEEEcccccchhhH-HHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNY-QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++.-+- ++. +.+.-++...||+||-+++++-.
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 888875432 233 33455678899999999987653
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0049 Score=59.33 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHH
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~---~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~ 173 (357)
..|+.+.......+.+.+..+.++.+... ...|+-+|+|-|-+.....+. . ...++++++-+|.++-..+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 45666666777888888888888865433 346788899999877665432 1 24689999999998876654 2
Q ss_pred HHcCC-CCeEEEEeccCCCccc-cCccEEEEcccccch---hhHHHHHHHHHHhcccCceEEE
Q 018346 174 RVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 174 ~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
....- ++|+++..|+..++.+ .+.|+++|-. +..+ +-.++.+..+.+.|||+|+.+=
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 22222 3899999999998876 7899888743 2222 3357889999999999987544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=57.44 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----------C--c
Q 018346 127 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------F--E 192 (357)
Q Consensus 127 ~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----------~--~ 192 (357)
..++.+|+=+|||. |..++..++.. ++.|+++|.+++.++.+++ .|. +++..|..+ . .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 34789999999995 66777788777 7899999999998776665 343 222211111 0 0
Q ss_pred ---------cc--cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 ---------~~--~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+ ..+|+||.......-+.+..+.+++.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589999876654433344446999999999999877544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=52.81 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCC----CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH---HHcC--------
Q 018346 113 AEKAMLELYCERSRL----EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-------- 177 (357)
Q Consensus 113 ~~~~~l~~l~~~~~~----~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~---~~~~-------- 177 (357)
.....++.+-...+. ....+||--|||.|.++..|+.. +..+-|-+.|--|+-...=-+ +..+
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI 207 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI 207 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence 334445544443332 23568999999999999999988 445566677766653221111 1000
Q ss_pred -----------------C------------CCeEEEEeccCCCccc----cCccEEEEcccccchhhHHHHHHHHHHhcc
Q 018346 178 -----------------L------------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224 (357)
Q Consensus 178 -----------------~------------~~v~~~~~d~~~~~~~----~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk 224 (357)
+ .......+|+.+.-.. +.||+|+...-++.-.+.-..++.+.++||
T Consensus 208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK 287 (369)
T ss_pred eccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc
Confidence 0 0112234565553221 469999999877777888999999999999
Q ss_pred cCceEEE
Q 018346 225 EDTLLFV 231 (357)
Q Consensus 225 pgG~l~~ 231 (357)
|||+.+=
T Consensus 288 ~GGvWiN 294 (369)
T KOG2798|consen 288 PGGVWIN 294 (369)
T ss_pred CCcEEEe
Confidence 9998754
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.019 Score=44.90 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~ 202 (357)
.+++|+|||.+.|..+++++.+. ...|+++++++...+..+++.+.+.+ +... ... +++.. +.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccccCCCcceEEE
Confidence 57899999999999999999874 45899999999999999888876643 2111 111 22223 67887665
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=52.54 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=76.4
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc--CCC---c--
Q 018346 121 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STF---E-- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~---~-- 192 (357)
.+++.+.+.+.+||=+|+| .|-.+...|+.+...+|+.+|+++..++.|++ .|.+.+....... .++ .
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHh
Confidence 4566778899999999999 47778888888756699999999999999887 3432222222211 110 0
Q ss_pred -cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCc
Q 018346 193 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 241 (357)
Q Consensus 193 -~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 241 (357)
.. ..+|+.+..... ...++.....+++||.+++.....+...+
T Consensus 237 ~~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~f 281 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQF 281 (354)
T ss_pred hccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCcccc
Confidence 01 348888876544 44566678889999998887776655443
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.014 Score=52.43 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc---cccCc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE---MEASY 197 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~---~~~~f 197 (357)
.+.++++||-||.|.|......+++ +. ..+.-+|++...++..++..... |. ++|..+-+|...+. ..++|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 3456789999999999999988877 33 37899999999999988877654 22 47999999876542 13789
Q ss_pred cEEEEccc--c-cch-hhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEM--F-EHM-KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~--~-~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+.... . ... ...+.++..+.+.|||||+++...-
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 99996432 1 111 2346788889999999999988643
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.089 Score=49.87 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCEEEEECCcccHHHHHHHH--------H-------CCCcEEEEEcCCHHHHHHHHHHHHH--------------cCCCC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQ--------K-------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 180 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~~vD~s~~~l~~a~~~~~~--------------~~~~~ 180 (357)
..+|+|+|||+|..++.+.. + .|..+|..-|+...-....-+.+.. .+. +
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-R 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-C
Confidence 56899999999987765532 1 2456788888654332222222211 111 1
Q ss_pred eEEEE---eccCCCccc-cCccEEEEcccccchhh--------------------------------------HHHHHHH
Q 018346 181 VEIIV---ADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKK 218 (357)
Q Consensus 181 v~~~~---~d~~~~~~~-~~fD~Ii~~~~~~~~~~--------------------------------------~~~~l~~ 218 (357)
.-|+. +.+..-.++ ++.++++|..++|++.. ...+++.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 333332233 78999999999888731 1223333
Q ss_pred HHHhcccCceEEEEeccCCC
Q 018346 219 ISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~~~~~~ 238 (357)
=.+-|.|||.+++...+++.
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 34568899999999988864
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=55.63 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=51.1
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~ 191 (357)
.-|||||+|+|-++...++.. +-.|++++.-..|.+.|++-..++|. ++|+++.---.+.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 469999999999999998886 45799999999999999999999988 4888877655543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.025 Score=51.74 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
..+++.++.... .+|..|||--||||..+.+..+. +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 445666665543 57899999999999999887766 78999999999999999998753
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0044 Score=55.42 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHH-HHH------HH----HcCCCCeEEEEe---ccCCCcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI-EEQ------CR----VLELQNVEIIVA---DISTFEM 193 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a-~~~------~~----~~~~~~v~~~~~---d~~~~~~ 193 (357)
..+++|||+|||+|-..+...... ...+...|.|.+.++.- -.+ +. +... -...... |.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~-~~~i~~s~l~dg~-~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK-VDEILNSLLSDGV-FNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhccc-ceeccccccccch-hhh
Confidence 368999999999999999888773 37888999888876211 000 00 0000 1122222 221 111
Q ss_pred cc--CccEEEEcccccchhhHHHH-HHHHHHhcccCceEEE
Q 018346 194 EA--SYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 231 (357)
Q Consensus 194 ~~--~fD~Ii~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 231 (357)
.+ .||+|.+...+...+..+.+ ......+++++|.+++
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 23 79999998888777666666 5556677889998776
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.063 Score=47.79 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~Ii~~~~ 205 (357)
.|+.|+=+| -.--.+++++-..-..+|..+||++..+....+-+.+.|++|+..+..|+....+. .+||+++..++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 467899998 44444555544332458999999999999999999999998899999999884332 78998887766
Q ss_pred ccchhhHHHHHHHHHHhcccC---ceEEE
Q 018346 206 FEHMKNYQNLLKKISKWMKED---TLLFV 231 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~Lkpg---G~l~~ 231 (357)
- .++..+.++.+=...||.- |++.+
T Consensus 231 e-Ti~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 231 E-TIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred h-hHHHHHHHHhccHHHhcCCCccceEee
Confidence 4 5667788888877788765 55444
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.022 Score=49.76 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
..+++.++... ..++..|||.-||+|..+.+..+. +-+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 34566666554 357899999999999999988776 7899999999999988864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.053 Score=51.81 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=69.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-cCC----CccccC
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IST----FEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-~~~----~~~~~~ 196 (357)
....+.++.+||.+|||. |..+..+++.....+++++|.+++.++.+++.. +...+.....+ +.. ......
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCC
Confidence 345566788999999987 888899998873236999999999877776642 22111111111 111 111136
Q ss_pred ccEEEEccccc---------------chhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFE---------------HMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~---------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+..-.-+ -..+....+..+.++|+|+|.++...
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 89888753211 11234567888999999999998764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.02 Score=52.10 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=53.1
Q ss_pred EEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEEEEccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 207 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~ 207 (357)
+|+|+.||.|..+..+... +. .+.++|+++.+++..+.|.... ++.+|+.++.. ...+|+|+..++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999999888876 44 5778999999988887776321 45667766532 24699999998775
Q ss_pred ch
Q 018346 208 HM 209 (357)
Q Consensus 208 ~~ 209 (357)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 44
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0082 Score=45.86 Aligned_cols=38 Identities=13% Similarity=0.416 Sum_probs=30.4
Q ss_pred CccEEEEcccccch------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+||+|+|-.+.-++ +....+++.+.+.|+|||.++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998877555 447889999999999999999963
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0057 Score=58.85 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc-cccCccEEEEccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~Ii~~~~~~ 207 (357)
-..|+|..+|.|+++.+|.+. . |..+..-|..-...-..+...|+ .-+..|+.+ ++ .+.+||+|.++.++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~--~--VWVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD--P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC--C--ceEEEecccCCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 357999999999999999754 3 33322222110011122233343 223445554 22 238899999999887
Q ss_pred ch---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HM---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. -+...++-++-|+|+|||.+++.+.
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 66 3467889999999999999999543
|
; GO: 0008168 methyltransferase activity |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.006 Score=54.72 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCEEEEECCcccHHHH-HHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~-~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.+..|+|+-+|-|.++. .+.... ...|+++|.+|.+++..++++..+++. +...+.+|-....+....|.|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL-- 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL-- 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc--
Confidence 46899999999999999 666553 468999999999999999999988763 6666777766544446677776532
Q ss_pred cchhhHHHHHHHHHHhcccCce
Q 018346 207 EHMKNYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~ 228 (357)
+|..++-...+.++|||.|-
T Consensus 271 --lPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 271 --LPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred --ccccccchHHHHHHhhhcCC
Confidence 25556666777788988665
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.037 Score=49.63 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCC--------CcEEEEEcCCHHHHHHHHHHHHHcC-----C-CCeEEEEeccCCCcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p--------~~~v~~vD~s~~~l~~a~~~~~~~~-----~-~~v~~~~~d~~~~~~~~ 195 (357)
+.+|+|+|+|+|.++..++..+. ..+++.||+|+...+..++++.... . .+|.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999998876532 3589999999998887777765421 2 25666 33444433
Q ss_pred CccEEEEcccccchh
Q 018346 196 SYDRIYSIEMFEHMK 210 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~ 210 (357)
..-+|++|.++..++
T Consensus 95 ~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 FPGFIIANELFDALP 109 (252)
T ss_dssp CCEEEEEESSGGGS-
T ss_pred CCEEEEEeeehhcCc
Confidence 356788999887775
|
; PDB: 4F3N_A 1ZKD_B. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.083 Score=52.84 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred CEEEEECCcccHHHHHHHHHC----CCcEEEEEcCCHHHHHHHHHHHHH-cCC--------CCeEEEEeccCCCccc---
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME--- 194 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~----p~~~v~~vD~s~~~l~~a~~~~~~-~~~--------~~v~~~~~d~~~~~~~--- 194 (357)
..|+=+|+|-|-+.....+.. -..+|++||-++.++.....+... ..- ..|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 368999999998766554432 135899999997755444444321 111 2599999999987422
Q ss_pred ---------cCccEEEEc--ccccchhhHHHHHHHHHHhccc----Cce
Q 018346 195 ---------ASYDRIYSI--EMFEHMKNYQNLLKKISKWMKE----DTL 228 (357)
Q Consensus 195 ---------~~fD~Ii~~--~~~~~~~~~~~~l~~~~~~Lkp----gG~ 228 (357)
+++|+|||- ++|..=+-.++.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999883 3333223356788888888887 776
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.053 Score=47.81 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.+++.++.... .++..|||.-||+|..+....+. +.+++|+|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 34555554432 47889999999999999887766 789999999999999999887654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.55 Score=41.34 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=89.5
Q ss_pred hhhcCC-ChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC---
Q 018346 78 EQHYEL-PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--- 153 (357)
Q Consensus 78 ~~~y~~-~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--- 153 (357)
..|||. +.+.|+....-. .||. +.+=.........++.. +..+...+|+|+|+..-+..|...+..
T Consensus 36 ~~FYD~~GS~LFe~I~~LP-----EYYp--TRtEaaIl~~~a~Eia~---~~g~~~lveLGsGns~Ktr~Llda~~~~~~ 105 (321)
T COG4301 36 KYFYDDRGSELFEQITRLP-----EYYP--TRTEAAILQARAAEIAS---ITGACTLVELGSGNSTKTRILLDALAHRGS 105 (321)
T ss_pred ceeecccHHHHHHHHhccc-----cccC--chhHHHHHHHHHHHHHH---hhCcceEEEecCCccHHHHHHHHHhhhcCC
Confidence 466754 566777776543 2232 11111111112222332 335789999999999888887766522
Q ss_pred -cEEEEEcCCHHHHHHHHHHHHHc--CCCCeEEEEeccCCCc--cc--cCccEEEEcccccch--hhHHHHHHHHHHhcc
Q 018346 154 -CKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTFE--ME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMK 224 (357)
Q Consensus 154 -~~v~~vD~s~~~l~~a~~~~~~~--~~~~v~~~~~d~~~~~--~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~Lk 224 (357)
.+++.+|+|...+....+.+... ++ .|.-+++|..... ++ +.==.++....+.++ .+...++..+...|+
T Consensus 106 ~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 106 LLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred cceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCC
Confidence 68999999999887665544333 23 5667777765421 11 222233444456666 446678999999999
Q ss_pred cCceEEEEec
Q 018346 225 EDTLLFVHHF 234 (357)
Q Consensus 225 pgG~l~~~~~ 234 (357)
||-.+++-.-
T Consensus 185 pGd~~LlGvD 194 (321)
T COG4301 185 PGDYFLLGVD 194 (321)
T ss_pred CcceEEEecc
Confidence 9999988544
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.057 Score=53.10 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=64.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----------------
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----------------- 190 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----------------- 190 (357)
++.+|+=+|||. |..+..+++.. ++.|+++|.++..++.++. .|. +++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHHH
Confidence 578999999985 56666667666 7889999999997665554 332 232222211
Q ss_pred ------Cccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 191 ------FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 191 ------~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+... ..+|+|+....+..-+.+.-+.+++.+.+|||++++=
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 0101 4699998877666655555577888999999998653
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.028 Score=48.60 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCEEEEECCcccHHHHHHHHHC----C-C----cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY----S-N----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~----p-~----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
-.+++|++...|..+..|.+++ | . ..+++||+.+- ..++.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4689999999999999998774 2 1 13999998654 23446778899998743
Q ss_pred cc-cCccEEEEccc-----ccchhh------HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 193 ME-ASYDRIYSIEM-----FEHMKN------YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~-----~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+. ++.|+|+|.+. +|.++. ....+.-...+|||||.++.-++-.+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 12 47999999873 454433 344566667889999999887775544
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.012 Score=56.33 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=83.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||.=|++|.-++..++..|+. +|++-|.++.+++..++|++.++.. .++....|+..+-. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 367899999999999999999998875 7999999999999999999988764 56777777665311 1679987
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
=..+ + .....+++.+.+.++.||.|.+.....
T Consensus 188 DLDP-y---Gs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 188 DLDP-Y---GSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred ecCC-C---CCccHHHHHHHHHhhcCCEEEEEecch
Confidence 6653 2 234668888889999999999976543
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=43.33 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=78.1
Q ss_pred CCCEEEEECCcccHHHHHHHHH---C-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------c-cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~---~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~-~~ 196 (357)
.+..|+|+|.-.|+.+++.|.. . ...+|+++|++-..++-+... .++|.|+.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 5679999999999988888754 2 237999999987765433322 3589999999887431 1 22
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 240 (357)
--+.++-.+-|+.+..-+-++.+.++|..|-++++++......+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 24445556667777777788888999999999999887766554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.3 Score=46.06 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=67.6
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCC-C-ccc--cCccEEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DIST-F-EME--ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~-~-~~~--~~fD~Ii 201 (357)
.++.+|+=+|||. |.++..+++.....+|+++|.++.-++.|++..... .+..... +... . ... ..+|+++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3445999999995 777788888876679999999999998887743211 1111111 1110 0 111 3599998
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
-... ....+..+.+.++|||.+.+.-....
T Consensus 244 e~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 244 EAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 5544 24578889999999999988655443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.32 Score=45.11 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-------CccccC
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEAS 196 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-------~~~~~~ 196 (357)
..+.++.+||..|+| .|..+..+++.. +.+|++++.+++..+.+++ .|.+. +..+-.. ......
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCC
Confidence 346678899998876 477888888876 7889999999987766643 34321 1111111 111256
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|+..... ...++.+.+.|+++|.++....
T Consensus 233 ~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 233 FDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ceEEEECCCC------HHHHHHHHHHhhcCCEEEEECC
Confidence 8988864321 3467788899999999887543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=48.10 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCcc-ccCcc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM-EASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~-~~~fD 198 (357)
......++.+||=.||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+.+ .....|+.+... .+.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 33444568899999886 466677777776 65 79999999988776654 343211 111111111111 13489
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+-...- ...+..+.+.|++||.+++.-
T Consensus 238 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSGH------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 88764321 245677888999999988754
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.11 Score=48.57 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-------HHcCC--
Q 018346 108 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-- 178 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-------~~~~~-- 178 (357)
+...+.+.+.+..+++.+.++++....|+|+|.|.....++.......-+|+++....-+.|..+. +..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 456666777788888899999999999999999999988886643345667776655444443332 22333
Q ss_pred CCeEEEEeccCCCcc----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 179 QNVEIIVADISTFEM----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 ~~v~~~~~d~~~~~~----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+..+++++.+... ....++|++|.+.-.- +...=++++..-+++|-+++-..+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEecccc
Confidence 257888888776322 1467899988765332 333334577788889988765433
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.15 Score=45.08 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
.+.++...+|+|.-.|+.+-.|.++ +..|++||.-+- .++.-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m-----a~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM-----AQSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh-----hhhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 3568999999999999999999988 789999998664 23333333 788899998887653 7799999875
Q ss_pred cccchhhHHHHHHHHHHhc
Q 018346 205 MFEHMKNYQNLLKKISKWM 223 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~L 223 (357)
+ +.+.++-..+...|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 4 34555555555554
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.15 Score=47.41 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHH----CC----CcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~p----~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
+.+..+.+.+..++|+|.|.|.++..+++. .| ..++..|++|++..+.-+++.+..
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344455556678999999999988887654 24 479999999999877777766554
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.54 Score=42.38 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=72.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCC-c--c-c-----cCc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF-E--M-E-----ASY 197 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~-~--~-~-----~~f 197 (357)
...|+.+|||-=.-...+... ++..++=+|. |+.++.-++.+...+. .+.+++..|+.+. . . . ...
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999986666655321 2467777777 6666666666665432 3788999998621 0 0 0 223
Q ss_pred cEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
-++++-.++.++ +....+++.+.+...||+.+++.....
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 478888888888 457789999988888999999876654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.078 Score=48.13 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCCCCCE--EEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCC---
Q 018346 117 MLELYCERSRLEDGHT--VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST--- 190 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~--vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~--- 190 (357)
.++.++..-...++.. -+|||+|.-++--.+-...-+....++|++...+..|+.++.++++. .+..++....+
T Consensus 88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll 167 (419)
T KOG2912|consen 88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167 (419)
T ss_pred HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence 4444544333333332 48998887766544433323678999999999999999999998874 66666553221
Q ss_pred -----CccccCccEEEEcccc
Q 018346 191 -----FEMEASYDRIYSIEMF 206 (357)
Q Consensus 191 -----~~~~~~fD~Ii~~~~~ 206 (357)
...+..||.+.||+++
T Consensus 168 ~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 168 MDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred hhhhccCccceeeEEecCCch
Confidence 1112459999999987
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.039 Score=45.12 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=61.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC-C-ccccCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~fD~Ii~~~~~ 206 (357)
+++++-+|+..-..-.....+. .++|+.+|.++--+. +..+ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 5678888888665544444442 457888887652111 0000 111 122222221 1 112789999999998
Q ss_pred cchh-----------hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMK-----------NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+. .-.+.+.++..+|||||.+++..|-..
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8761 124678889999999999999988664
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.64 Score=43.34 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
....+.++.+||=.|+| .|..+..+++.. +++|++++.+++.++.+++ .|.+.+ + |..+.. .+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~Ga~~v--i--~~~~~~-~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----LGAASA--G--GAYDTP-PEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----hCCcee--c--cccccC-cccceEEE
Confidence 34567788999999975 455666777776 7889999999887655544 454321 1 111111 24578765
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 246778889999999987754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.56 Score=46.57 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCC-Ccc--ccCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADIST-FEM--EASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~-~~~--~~~fD~ 199 (357)
++..|.|..||+|.+.....+... ...++|.+..+.+...++.++.-.+.. ......+|-.. ... ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567999999999998876544321 246999999999999999987655542 22333344332 111 156999
Q ss_pred EEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++++++... +.-..++..+..+|++||...+..+..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 9999976321 012346777888999999877665543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.021 Score=53.74 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 191 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~ 191 (357)
.++|..|.|+.||.|-+++.++.+ ++.|++-|+++++++..+.+++.+.++ +|..+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 357899999999999999999988 799999999999999999999887764 488888776553
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.41 Score=45.05 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcC---CHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~---s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
..++.+||=+|+| .|.++..+++.. +++|++++. ++..++.++ ..|.+.+.....|..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 366777788776 679999986 566555443 3443211111111111001146898886
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...- ...+....+.|++||.+++.-
T Consensus 245 ~~g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATGV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcCC------HHHHHHHHHHccCCcEEEEEe
Confidence 5321 236777889999999987653
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.05 Score=49.74 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=40.8
Q ss_pred CeEEEEeccCCCc--c-ccCccEEEEcccccc----------------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 180 NVEIIVADISTFE--M-EASYDRIYSIEMFEH----------------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 180 ~v~~~~~d~~~~~--~-~~~fD~Ii~~~~~~~----------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+.+++++|..+.. . .++||+|++++++.- .......+..+.++|||||.+++...
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4577888887631 2 278999999998742 11235688999999999999998643
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.14 Score=47.56 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=51.6
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--c-CccEEEEcccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFEH 208 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~-~fD~Ii~~~~~~~ 208 (357)
+++|+.||.|+++..+.... -..+.++|+++.+.+.-+.|.. ....+|+.++... . .+|+++..++-+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 79999999999999998873 2357799999998888887763 6788899887532 3 5999999887644
Q ss_pred h
Q 018346 209 M 209 (357)
Q Consensus 209 ~ 209 (357)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 3
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.26 Score=45.93 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 115 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 115 ~~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
.+.+..++..+.. .+-..|+|+|.|.|.++..++-.+ +..|++||.|....+.|++
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 3444445544433 345689999999999999999887 8899999999877766655
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.07 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~ 161 (357)
+....+|||||+|-+..-|... |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5568999999999999988887 667789986
|
; GO: 0008168 methyltransferase activity |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.8 Score=35.96 Aligned_cols=95 Identities=8% Similarity=-0.006 Sum_probs=63.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC---c--cccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~---~--~~~~fD~Ii~~ 203 (357)
++.+|+-|||=+-...+.- ...++.+++..|++.. ....+- + .|+.-|.... + ..++||+|++.
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~R--------F~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRR--------FEQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecch--------HHhcCC-c-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 5689999998775444332 1335778999999764 333332 3 5677776652 1 12789999999
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++-.-+-..+....+.-++|+++.+++.+.
T Consensus 94 PPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 9994334445566667777789898888655
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.22 Score=45.35 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 130 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
+.+|.-||.| .|..+..+|--. ++.|+-+|+|.+-+.+....+ +. ++.....+...+... .+.|+||..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~~-rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---GG-RVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---Cc-eeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4578888888 466777777555 889999999998765554433 22 666666665544322 6789999877666
Q ss_pred chhhHHHHHHHHHHhcccCceEEE
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.-..+.-..+++.+.+|||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 667788889999999999998754
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.74 Score=38.45 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=61.1
Q ss_pred ECCcccHHHHHHHHHCC-CcEEEEEcCCHH--HHHHH---HHHHHHcCCCCeE-EEEeccCCCc--c---ccCccEEEEc
Q 018346 136 VGCGWGSLSLYIAQKYS-NCKITGICNSKT--QKEFI---EEQCRVLELQNVE-IIVADISTFE--M---EASYDRIYSI 203 (357)
Q Consensus 136 iGcG~G~~~~~la~~~p-~~~v~~vD~s~~--~l~~a---~~~~~~~~~~~v~-~~~~d~~~~~--~---~~~fD~Ii~~ 203 (357)
+|=|.=+++..|++.++ +..++++..... ..+.. ..++....-.++. ....|+..+. + ...||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45566667778888875 556666654333 22221 2333322111222 2334555542 1 2679999999
Q ss_pred ccccc-----h--------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEH-----M--------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~-----~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.|-.. - .-...+++.+.++|+++|.+.+.....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 88655 1 125678899999999999999976654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.078 Score=51.06 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------cccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------MEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~I 200 (357)
.+.++|-+|-|+|.+...+...+|..++++++++|.+++.|..++....-++..++-.|..+.. -...||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568999999999999999999999999999999999999998764332222333333333211 11468988
Q ss_pred EEcc---cccch--hh----HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 201 YSIE---MFEHM--KN----YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 201 i~~~---~~~~~--~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
...- ..+.+ +. ...++..+...|.|-|.+++...++..
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 7532 12333 11 255788889999999999998777654
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.19 Score=45.87 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCEEEEECCcccHHHHHHHHHC--------------------CCcEEEEEcCCHHH--HHHHHHHHHHc-----------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 176 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--------------------p~~~v~~vD~s~~~--l~~a~~~~~~~----------- 176 (357)
..+||.||.|.|.-...++..+ +...++.||+.+-. +......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998766666544 11489999987643 22222222111
Q ss_pred --CC--C--CeEEEEeccCCCccc--------cCccEEEEcccccc-----hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 177 --EL--Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 177 --~~--~--~v~~~~~d~~~~~~~--------~~fD~Ii~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. + ++.|.+.|+.....+ .+.|+|.....++. +..-.+++.++...++||..|+|.+..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 1 689999999876432 12455554444432 345678999999999999999886553
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.81 Score=42.86 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
...++.+||=+|||. |..+..++++ ..+.+|+++|.+++.++.+++ .+. . ....+ ......+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~~---~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLIDD---IPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehhh---hhhccCCcEEEEC
Confidence 346789999999863 4455566664 445689999999987777654 221 1 11111 1111248988853
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..- ......+....++|++||++++.-
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 321 012456788889999999988754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.81 Score=36.03 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=48.4
Q ss_pred CCCEEEEECCccc-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~ 205 (357)
+..+|+|+|-|.= ..+..|++. +..|+++|+.+. ++. . .+.++..|+.+.... ...|+|.|.-+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCC
Confidence 3459999999864 456666766 799999999987 222 2 567899999985544 67899998655
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
-..+ ...+-++.+. -|.-+++...+...
T Consensus 80 P~El---~~~il~lA~~--v~adlii~pL~~e~ 107 (127)
T PF03686_consen 80 PPEL---QPPILELAKK--VGADLIIRPLGGES 107 (127)
T ss_dssp -TTS---HHHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred ChHH---hHHHHHHHHH--hCCCEEEECCCCCC
Confidence 4322 2333333332 25667776554433
|
; PDB: 2K4M_A. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.45 Score=42.36 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHH---C--CCcEEEEEcCCH------------------------
Q 018346 114 EKAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------------ 163 (357)
Q Consensus 114 ~~~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~---~--p~~~v~~vD~s~------------------------ 163 (357)
....+..+++..-. .-+..|+|.||-.|..++.++.. + ++.++++.|.=.
T Consensus 58 Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~ 137 (248)
T PF05711_consen 58 RLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGY 137 (248)
T ss_dssp HHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccc
Confidence 34445555554421 22358999999999877665432 2 345788887211
Q ss_pred --HHHHHHHHHHHHcCC--CCeEEEEeccCCCccc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 164 --TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 164 --~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..++..++++...|+ +++.++.+.+.+..+. .++-++... ..........|+.+...|.|||++++.+.+.
T Consensus 138 ~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 138 LAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe--ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 134445555555554 4899999998763222 222222222 2222456778999999999999999977654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.8 Score=37.76 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=63.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------c---c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------E---A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~---~ 195 (357)
.+++||-.|++ |.++..+++.+ .+.+|++++-+++....+.+.....+ ++.++.+|+.+... . +
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35789999875 55555555443 37899999998876665544443322 68888999886320 0 3
Q ss_pred CccEEEEcccccch-----------------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHM-----------------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..|.++.+...... .....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46888876642110 1122345566667778887776544
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.8 Score=37.49 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCCEEEEECCccc----HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCC-Cccc-cCccEEE
Q 018346 129 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIST-FEME-ASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G----~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~-~~fD~Ii 201 (357)
+...|+++.|+.| .+++..|.+.-+.++++|-.++..+...++.+...+.. .++|+.++..+ .... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4578999976644 23444444445789999999988888888888877764 57999888533 2222 6789888
Q ss_pred EcccccchhhHH-HHHHHHHHhcccCceEEEEec
Q 018346 202 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...-. .+.. ++++.+. +.|.|.+++...
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEec
Confidence 76433 2334 4554432 556677666433
|
The function of this family is unknown. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.48 Score=42.07 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC------ccccCccEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF------EMEASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~I 200 (357)
.++.+||..|+|+ |..+..+++.. +.+|++++.++...+.+++ .+.+. ++...-... .....+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADH--VIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCce--eccCCcCCHHHHHHHhcCCCCCEE
Confidence 6788999999985 66777777765 6899999999877665543 22211 111110010 012569999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+....- ...+..+.+.|+++|.++....
T Consensus 206 i~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 865331 1456777889999999887543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.44 Score=43.25 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC----CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS----TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~----~~~~~~~ 196 (357)
......++.+||=+|+| .|..+..+++.. +++ |+++|.++..++.+++ .|.+.+ +...+.. +......
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34445578899999886 355666677766 665 9999999887666554 343211 1001110 0111135
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+-... ....++.+.+.|+|+|++++.-
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 898876422 1345777888999999988754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.6 Score=36.72 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc-cCccEEEEcccccchhh
Q 018346 139 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 211 (357)
Q Consensus 139 G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~fD~Ii~~~~~~~~~~ 211 (357)
|.|..+..+++.. +++|+++|.++..++.+++ .|.+ .++..+-.++. .. ..+|+|+-...-
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecCc-----
Confidence 4688899999887 5999999999997766654 3432 12222211110 11 369998865431
Q ss_pred HHHHHHHHHHhcccCceEEEEeccC
Q 018346 212 YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 212 ~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...++...++|+|+|.+++.-...
T Consensus 69 -~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 -GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -HHHHHHHHHHhccCCEEEEEEccC
Confidence 467888999999999998865544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.17 Score=46.99 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=50.7
Q ss_pred EEEECCcccHHHHHHHHHCCCcEE-EEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccccch
Q 018346 133 VLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFEHM 209 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~p~~~v-~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~~ 209 (357)
|+|+.||.|.++.-+... +.++ .++|+++.+.+..+.|... .+..+|+.++... ..+|+++..++-..+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999988866 5664 5799999988877776532 3355777765432 458999988765443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.7 Score=41.93 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
++.+++..++ .++.+|+=+|||. |......++.. +++|+++|.++...+.|+. .|. +.. +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3445554443 4789999999996 55555555555 7899999999986655543 343 211 11111 14
Q ss_pred CccEEEEcccccchhhHHHHHHH-HHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 233 (357)
.+|+|+.... ....+.. ..+.+|+||+++..-
T Consensus 257 ~aDVVI~atG------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTTG------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECCC------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 5799987532 1334544 478999999987654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.1 Score=34.41 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=56.3
Q ss_pred CcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcccccchh
Q 018346 138 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 138 cG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~~~~~~~ 210 (357)
||.|.++..+++.+ .+..|+.+|.+++.++.+++ . .+.++.+|..+... . .+.|.|++...-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--- 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDDD--- 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSSH---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCCH---
Confidence 67777888777654 24589999999997666554 2 46789999987421 1 5788888754421
Q ss_pred hHHHHHHHHHHhcccCceEEEEecc
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.....+....+.+.|...++.....
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 2233344455667788887776543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.34 Score=45.24 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---c-CccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~-~fD~Ii~~~ 204 (357)
..+++|+.||.|.+..-+... +. -+.++|+++.+++.-+.|... ..++..|+.+.... . .+|+++..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 468999999999999888876 44 467999999988777776542 45567777765432 2 789999998
Q ss_pred cccch
Q 018346 205 MFEHM 209 (357)
Q Consensus 205 ~~~~~ 209 (357)
+-+.+
T Consensus 76 PCQ~F 80 (328)
T COG0270 76 PCQDF 80 (328)
T ss_pred CCcch
Confidence 77655
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.55 Score=43.75 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=60.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccC---CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~ 196 (357)
....+.++.+||=+|+| .|..+..+++.. +++ |+++|.+++..+.+++ .|.+.+ .....+.. +......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 44566778999999875 355566677765 666 9999999887666543 343211 11111100 1111136
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+-...- ...+....+.|+++|.+++.-
T Consensus 232 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8988854321 234566778899999987643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.59 Score=44.30 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=62.0
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC-Cc--ccc
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-FE--MEA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~-~~--~~~ 195 (357)
.+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.++..++.+++ .|.+.+ .....|..+ +. ..+
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCC
Confidence 344566788899999876 356667777766 66 69999999987776644 343211 111111111 00 013
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+....+.|+++|.+++.-
T Consensus 259 g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 58988854221 245677788999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.69 Score=41.57 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 190 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~ 190 (357)
++..+.+.--+.+...++|+|||.|.++.+++... +...++.||-...-. .+......... ..+.=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 44444444444677899999999999999999887 456899999755322 22222332221 145666677776
Q ss_pred Cc
Q 018346 191 FE 192 (357)
Q Consensus 191 ~~ 192 (357)
+.
T Consensus 85 l~ 86 (259)
T PF05206_consen 85 LD 86 (259)
T ss_pred cc
Confidence 54
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.5 Score=39.81 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
....+.++.+||=.||| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....|..+ .....
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCC
Confidence 34456788999999885 356667777776 66 59999999987766643 343211 111111111 01113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+....+.+++||++++.-
T Consensus 245 g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 245 GADVVIDAVGR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence 58988753221 235667778999999988753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.8 Score=37.50 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.+||-.| |+|.++..+++.+ .+++|++++.+++.+....+.....+. ++.++..|+.+... . +
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888887 4566666555443 378999999988876655544444333 67788889876320 0 3
Q ss_pred CccEEEEcc
Q 018346 196 SYDRIYSIE 204 (357)
Q Consensus 196 ~fD~Ii~~~ 204 (357)
..|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579998765
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.9 Score=37.11 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.++++|=.| |+|.++..+++.+ .+.+|+.++-++..++...+.....+. ++.++.+|+.+... . +
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467888888 5667777766554 367999999988877666655554443 68889999987321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 58999987653
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.79 Score=42.80 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--cc-
Q 018346 121 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--ME- 194 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~- 194 (357)
+.....++++.+||=.|+ |.|.+++.|++.. ++.++++-.|++-.+ .+++.|.+ -+.+...|+.+-. ..
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 344566778999999984 5678999999987 557777777776443 33445543 2333344433311 11
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|+|+..-- ...+....+.|+++|.++..-.
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 35999987533 3456668889999999887544
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.22 Score=43.93 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=37.5
Q ss_pred EEEEeccCCC--cc-ccCccEEEEcccccc---------h------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 182 EIIVADISTF--EM-EASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 182 ~~~~~d~~~~--~~-~~~fD~Ii~~~~~~~---------~------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++|..+. .. .+++|+|+..+++.- + .-....+.++.++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 5667777653 22 378999999998841 0 124578899999999999987643
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.6 Score=37.85 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCccccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
...+.++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .| .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45567888999998875 66777777776 566 9999999887665554 23 111111110 11112468988
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..... ...+....+.|+++|.++...
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 864221 235677788999999987643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.64 Score=47.88 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=64.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-------C-----CcEEEEEcCCH---HHHHHHHH-----------HHHH-----cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIEE-----------QCRV-----LE 177 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-------p-----~~~v~~vD~s~---~~l~~a~~-----------~~~~-----~~ 177 (357)
+.-+|+|+|-|+|.......+.+ | ..+++++|..| +.+..+.+ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999777665433 3 24889999644 33333221 1111 12
Q ss_pred C-------C--CeEEEEeccCCCcc--ccCccEEEEcccccch-h--hHHHHHHHHHHhcccCceEEEEe
Q 018346 178 L-------Q--NVEIIVADISTFEM--EASYDRIYSIEMFEHM-K--NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 178 ~-------~--~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. . ++++..+|+.+... ...+|+|+..+---.- + --..+++.+.++++|||++.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 1 34566778765322 1469999986421111 1 13679999999999999987543
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.1 Score=39.09 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=62.8
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe-ccCC-Cc--ccc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~-d~~~-~~--~~~ 195 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ ..|.+.+ ..... ++.+ .. ..+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3455678899999997 3778888888886 7899999998886555542 2344211 11101 1111 00 013
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-... ...+..+.++|++||.+++.
T Consensus 228 gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNVG-------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECCC-------HHHHHHHHHHhccCCEEEEE
Confidence 5888875322 23567788999999998864
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.92 Score=41.29 Aligned_cols=89 Identities=21% Similarity=0.151 Sum_probs=54.6
Q ss_pred CEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 131 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 131 ~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.+|+=+|.| .|.++..+.+..+...+++.|.+...++.+.+ .|+ .....+..........|+|+..-|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHHH
Confidence 577888877 45677777776556678999999886555443 222 222111110111145799998777653
Q ss_pred hhhHHHHHHHHHHhcccCceE
Q 018346 209 MKNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l 229 (357)
...+++++...|+||..+
T Consensus 77 ---~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 77 ---TEEVLKELAPHLKKGAIV 94 (279)
T ss_pred ---HHHHHHHhcccCCCCCEE
Confidence 456777777777777654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.43 Score=45.35 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=55.5
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
++.+|+=+|+| .|..+...+... +++|+++|.+++.++.+.... +. .+.....+...+... ..+|+|+.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45679999998 455666666665 679999999987655443321 21 122111111111101 568999976433
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+.+.-+-++..+.++||++++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 222112212355667789998765433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.6 Score=40.63 Aligned_cols=92 Identities=12% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec---cCCCccc-cCccEEE
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFEME-ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d---~~~~~~~-~~fD~Ii 201 (357)
.++.+||-.|||. |..+..+++.. +. ++++++.++...+.+++ .+.+. ++..+ +...... ..+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCccEEE
Confidence 3788999998875 66777788776 66 79999998887664433 23321 11111 1111111 3589998
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..... ...++.+.+.|+++|.++..
T Consensus 237 d~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 75331 23567788999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=90.75 E-value=4 Score=37.70 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=62.5
Q ss_pred HHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe---ccCCC---cc
Q 018346 122 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTF---EM 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---d~~~~---~~ 193 (357)
.+...+.++.+||=.|. |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ +-.. +..+. ..
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK----LGFDVA-FNYKTVKSLEETLKKAS 204 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEE-EeccccccHHHHHHHhC
Confidence 34556778899998884 5778888888876 7899999998886655533 444221 1111 11110 01
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+-... ...+....++|+++|+++..
T Consensus 205 ~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 205 PDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEe
Confidence 135888875321 12457788999999999864
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.98 Score=36.53 Aligned_cols=115 Identities=12% Similarity=0.016 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
.+|+..+++.......-+ .-|||+|-|.|..=-.|.+.+|+.+|+++|-.-..- ...--+.-.++.+|+.+.
T Consensus 12 taQR~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~t 83 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRET 83 (160)
T ss_dssp HHHHHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHH
T ss_pred HHHHHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHH
Confidence 357778888887776544 479999999999999999999999999999432110 000001234566666552
Q ss_pred ccc-----cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EME-----ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~~-----~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
... .+.-++-...-.++- .....+-..+..+|.|||.++-..+
T Consensus 84 l~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 84 LPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred hHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 111 122222222222211 1122233446788999999876544
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.63 E-value=4.8 Score=37.16 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----cccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 195 (357)
....+.++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 44566788899999876 366777777776 666 8899999887665533 3332 2222111110 0124
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+|+|+.... ....+..+.++|+++|.++....
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 6899986422 13467777889999999876443
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.42 Score=47.35 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----cc-----ccC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EM-----EAS 196 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~-----~~~ 196 (357)
+.++..|||+||..|+.....++..| +.-|+|+|+-|- ..++++.-.+.|+... +. ..+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 35788999999999999998888876 567999998764 1223555555665532 11 135
Q ss_pred ccEEEEccccc----chhh-------HHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFE----HMKN-------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.|+|+..++-. +..+ .-..++-+...|..||.++--.+.
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 68888765321 1111 234566677888999995554443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.1 Score=41.55 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cCC------CCeEEEEeccCCCccc
Q 018346 130 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 194 (357)
Q Consensus 130 ~~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~ 194 (357)
-.+|-=||+|+ ..++..++.. |.+|+..|.+++.++.++..+.. .+. .++++.. |+.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--h
Confidence 35788899884 3344445544 89999999999988776554321 111 1223221 22110 1
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...|+|+-+ +.+.++-...+++++.+.++|+.++...+.
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 457888875 445555567889999999999885444333
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.8 Score=39.84 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=55.7
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
++.+||=+||| .|..+..+++.. +++ |+++|.+++.++.+... .. + |..+. ....+|+|+-...-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~~-----i--~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----EV-----L--DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----cc-----c--Chhhc-cCCCCCEEEECCCC
Confidence 56788888886 467777788776 554 77889888766555431 10 1 11110 12458988864331
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...+..+.+.|+++|++++.-.
T Consensus 211 ------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------HHHHHHHHHhhhcCcEEEEEee
Confidence 3456778889999999987543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=5.2 Score=35.15 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCH-HHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSK-TQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~-~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|-.|++ |.++..+++.+ .+.+|++++.+. ...+.........+. ++.++.+|+.+... .
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35788888854 45555555443 367888887654 233333333333333 67888999886321 0
Q ss_pred cCccEEEEcccccch-------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+|+.+...... .....+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 357988876643210 123456777777776667666543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=4.4 Score=35.52 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.+||=.|+ +|.++..+++.+ .+.+|++++.+++.+....+.....+. ++.++.+|+.+... . +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG-RAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578887764 566666666543 367899999888776665555544443 78899999986321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 58998877643
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.1 Score=33.08 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCEEEEECCccc-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 130 GHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
..+|+|+|-|-= ..+..|+++ ++.|+++|+++. ++. . .+.++..|+++.... ...|+|.|.-+-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a~-~---g~~~v~DDitnP~~~iY~~A~lIYSiRpp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TAP-E---GLRFVVDDITNPNISIYEGADLIYSIRPP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cCc-c---cceEEEccCCCccHHHhhCccceeecCCC
Confidence 349999998854 356666666 799999999886 222 2 678999999985544 678999986442
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++....+-.+.+. -|..+++...+.
T Consensus 81 ---pEl~~~ildva~a--Vga~l~I~pL~G 105 (129)
T COG1255 81 ---PELQSAILDVAKA--VGAPLYIKPLTG 105 (129)
T ss_pred ---HHHHHHHHHHHHh--hCCCEEEEecCC
Confidence 2333333333332 245566654443
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.3 Score=43.41 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=51.1
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------------- 193 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------------- 193 (357)
..+++|+-||.|++...+-... .-.|.++|+++.+.+.-+.|.... +....+..|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCccccccccchhhhhhhhh
Confidence 5699999999999999987662 235678999999877777664211 122334455554321
Q ss_pred -c-cCccEEEEcccccch
Q 018346 194 -E-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~~ 209 (357)
. ..+|+++..++-+.+
T Consensus 165 ~~~p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPF 182 (467)
T ss_pred ccCCCCCEEEEcCCCCcc
Confidence 0 257998887766543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.7 Score=35.44 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.++|=.|+ +|.++..+++.+ .+++|++++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678888885 566666655443 378999999998876665555544343 68888899876421 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
++|+|+.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899998654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.75 E-value=2.8 Score=38.12 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----------cc-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 194 (357)
.+..||==|.|+|- ++..+|++ +++++..|++++..+...+..+..| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889999998884 67777777 7899999999999988888887766 7888999988742 11
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.|..+
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 678999988754
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.66 E-value=5.8 Score=37.12 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe---ccCC----Cccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA---DIST----FEME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~---d~~~----~~~~ 194 (357)
...+.++.+||=.|||. |..+..+++.. +++|+++|.+++.++.+++ .|.+.+ ..... |+.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 35667889999999964 66777778776 6789999999987776644 343211 11111 1110 0001
Q ss_pred cCcc----EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD----~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+| +|+-... ....+..+.++|++||++++.-
T Consensus 236 ~g~d~~~d~v~d~~g------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFECSG------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEECCC------ChHHHHHHHHHHhcCCeEEEEC
Confidence 2354 4442211 1345666778999999987753
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.94 Score=39.17 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
+.+.+++..+.-.+.-|.+||.|.|+++..+.... ..+...+++++..+.-.+...+.... +...+.+|+..+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCCc-ceEEecccccee
Confidence 34456666665567889999999999999999763 35788888888877766555543333 677777777653
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.62 E-value=7 Score=35.83 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+....+.++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ .|.+.+. +.........+|+|
T Consensus 148 ~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~v 218 (319)
T cd08242 148 LEQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVV 218 (319)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEE
Confidence 345566788899998764 344555556665 7889999999887766654 3442111 11111112569988
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.... -...+..+.+.|+++|.++.
T Consensus 219 id~~g------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 219 VEATG------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EECCC------ChHHHHHHHHHhhcCCEEEE
Confidence 86421 13356777889999999886
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.44 E-value=3.4 Score=39.31 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=60.8
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-----cCC-C-cc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-F-EM 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-----~~~-~-~~ 193 (357)
+...+.++.+||=+||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++..+ +.+ . ..
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34566788999999986 355666677776 66 69999999987776644 34421 22111 111 0 00
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
.+.+|+|+-...- ...+......+++| |.+++.-
T Consensus 265 ~~~g~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAGN------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCCC------hHHHHHHHHhhhcCCCEEEEEc
Confidence 1258988764331 24566777788886 8876643
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.42 E-value=6.7 Score=36.12 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEE
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
..+.++.+||-.||| .|..+..+++.. +.+|++++.+++..+.+++ .+.+.+ +..+-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADEV--VDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcEE--eccCCcchHHhccCCCCEEE
Confidence 456778899999987 677777777775 7899999999987666533 232111 111100000 114589888
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....- ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 64221 235677788999999887653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.4 Score=40.90 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----CccccC
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~~ 196 (357)
....+.++.+||-.|+|. |..+..+++.. +.+|+++..+++..+.+++ .+.+.+ .....++.+ ......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 345567888999998864 77778888776 7899999888887665533 232211 111111111 111135
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+.... -...+..+.+.|+++|.++...
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 899987521 1345677888999999987643
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.6 Score=40.81 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=58.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccC---CCccccC
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEAS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~ 196 (357)
......++.+||=.||| .|..+..+++.. +++ |++++.+++..+.+++ .|.+.+ .....+.. .......
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCC
Confidence 34455678899999886 355666677766 665 7899999987665533 343211 10111100 0111135
Q ss_pred cc-EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD-~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+| +|+-... -...+....+.|++||.+++.-
T Consensus 229 ~d~~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILETAG------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 77 5543211 1346777889999999988753
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.87 E-value=1.2 Score=42.43 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=35.9
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+++.++.+||-|.+| |+.+..++...| .+|++||+||.++...+-+..
T Consensus 30 aL~i~~~d~vl~ItSa-G~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSA-GCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HhCCCCCCeEEEEccC-CchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 3567899999999654 555555555544 799999999998877765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.1 Score=34.98 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=78.6
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----CccccCccEEEEcccccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~Ii~~~~~~~ 208 (357)
|..-|||-.++..+.+. .-++.++++-|.-....++++. +..++++..+|-.. +|++++=-+|+..++++-
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88999999999888866 6689999999988887877776 23489999999654 344455689999999998
Q ss_pred hhhHHHHHHHHHHhcc--cCceEEEEecc
Q 018346 209 MKNYQNLLKKISKWMK--EDTLLFVHHFC 235 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 235 (357)
-.++..+++.+.+.++ ++|+..+=-|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8899999999888887 68887774443
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.71 E-value=8.3 Score=33.83 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=49.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+.++|=.| |+|.++..+++.+ .+.+|++++-++.......+.....+. ++.++..|+.+... . +
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG-TAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788777 5566666666543 368999999887765555444433322 67788899886421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+||.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 58999987654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=8.6 Score=34.21 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCEEEEECCccc-HHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++.+|-.|+++| .++..+++.+ .+++|+.++.+....+.+.+.....+ .+.++.+|+.+... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4678999998873 6666665543 37889888887654333333322222 34577888876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+..+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 468999988643
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=9.3 Score=34.44 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred EEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------c--cCccEE
Q 018346 132 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------E--ASYDRI 200 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~--~~fD~I 200 (357)
.+|=-|+ |.++..+++.+ .+.+|+.+|.++..++.+.+.....+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 46877777665 467999999988776655555544443 68888999876321 0 458999
Q ss_pred EEcccccch-hh-----------HHHHHHHHHHhcccCceEEE
Q 018346 201 YSIEMFEHM-KN-----------YQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 201 i~~~~~~~~-~~-----------~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.+...... .+ .-.+++.+.+.++++|.+++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 987754321 11 22345556666666666544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=6.6 Score=34.88 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=48.3
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cCc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ASY 197 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~f 197 (357)
.+||-.| |+|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4677666 4556666655443 367999999988766655555444443 78888999877421 0 257
Q ss_pred cEEEEcccc
Q 018346 198 DRIYSIEMF 206 (357)
Q Consensus 198 D~Ii~~~~~ 206 (357)
|.|+.+...
T Consensus 80 d~vi~~ag~ 88 (263)
T PRK06181 80 DILVNNAGI 88 (263)
T ss_pred CEEEECCCc
Confidence 999987643
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=88.19 E-value=3.3 Score=38.12 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 194 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+. ++..+-.++. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~--vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDA--VFNYKTVSLEEALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCE--EEeCCCccHHHHHHHHCC
Confidence 4455678889998873 5677888888886 7899999988886655543 44422 1211111110 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+|+|+.... ...+....++|+++|.++..
T Consensus 210 ~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 35888875321 24567888999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.06 E-value=4.2 Score=38.77 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=47.0
Q ss_pred CEEEEECCcccHHHHHHHHH---CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c--cCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQK---YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E--ASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~---~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~--~~fD~Ii~~ 203 (357)
.+||=|||| .++...+.. ....+|+..|-|++..+.+.... ..+++..+.|+.+.+. . ..+|+||+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 479999995 444433332 22379999999988765554432 2278999999987532 1 567999987
Q ss_pred ccc
Q 018346 204 EMF 206 (357)
Q Consensus 204 ~~~ 206 (357)
.+.
T Consensus 76 ~p~ 78 (389)
T COG1748 76 APP 78 (389)
T ss_pred CCc
Confidence 654
|
|
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=88.04 E-value=2.8 Score=31.64 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred EEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchh
Q 018346 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 210 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~ 210 (357)
+|| +.||.|..+..++++ .++.++..|+ ++++......+.+.. +.+|+|+..+-+
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~PQv---- 57 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILAPQM---- 57 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEcChH----
Confidence 344 567888655555544 4566667777 677777777665433 679999887654
Q ss_pred hHHHHHHHHHHhcccCceEEEEe
Q 018346 211 NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 211 ~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+-.++.+.+.+.+-|.-+..+
T Consensus 58 --~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 58 --ASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred --HHHHHHHHHHhhhcCCCEEEe
Confidence 344666777777777755543
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.2 Score=42.77 Aligned_cols=108 Identities=10% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHHHHH---cCC---CCeEEEEeccCCCccccCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRV---LEL---QNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p--~~~v~~vD~s~~~l~~a~~~~~~---~~~---~~v~~~~~d~~~~~~~~~fD~I 200 (357)
.+..+.|+|.|.|.-.-.+....+ .-.++.||.|..+......+.+. .|- .++.|...-+. .+....||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~p-i~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLP-IDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCC-CCcccceeeE
Confidence 456789999887765444443333 35799999999999988887765 111 11111111111 1112569999
Q ss_pred EEcccccchhhH---HHH-HHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEHMKNY---QNL-LKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~~~~~---~~~-l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++...++++.+. ... -....+..++|+.+++...+..
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999887332 222 3334566789999888766554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=7.8 Score=36.19 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.+.+||=.|++ |.++..+++.+ .+++|+.++.+++.++...+.+...+. ++.++.+|+.+... . +
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 35678888754 45555554432 278999999998887776666665554 78889999877321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
++|++|.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999887653
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.65 E-value=2.5 Score=39.43 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEec-------cCCCc
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d-------~~~~~ 192 (357)
....+.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455677888999888764 66777788776 666 8999888877665543 233211 111111 11111
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+|+|+....- ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 11458999865321 235677888999999987643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.57 E-value=5.7 Score=36.24 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=57.8
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--------CC----------CCeEEEEeccCC
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 190 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--------~~----------~~v~~~~~d~~~ 190 (357)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.++++.... .+ .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 468888988543 34444443 679999999999988887653211 11 12332 223222
Q ss_pred CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 191 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
. -...|+|+..-+ +..+....+++++.+.++++..+..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 145798887644 3334456778888888877765544
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.3 Score=39.87 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccchhhHHHHHHHHHHh
Q 018346 143 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 222 (357)
Q Consensus 143 ~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~ 222 (357)
++..|.+..+..+|+|.|.++..++.|.+ .|+ +.-...+... -..+|+|+..-+... ...+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~--~~~~~~~~~~---~~~~DlvvlavP~~~---~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGI--IDEASTDIEA---VEDADLVVLAVPVSA---IEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTS--SSEEESHHHH---GGCCSEEEE-S-HHH---HHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCC--eeeccCCHhH---hcCCCEEEEcCCHHH---HHHHHHHhhhh
Confidence 45677777777999999999997766643 343 1112222111 145799998776653 35666777776
Q ss_pred cccCceE
Q 018346 223 MKEDTLL 229 (357)
Q Consensus 223 LkpgG~l 229 (357)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 7666543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.37 E-value=3.1 Score=38.02 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---C-----C---------CCeEEEEeccCCCc
Q 018346 132 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---E-----L---------QNVEIIVADISTFE 192 (357)
Q Consensus 132 ~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---~-----~---------~~v~~~~~d~~~~~ 192 (357)
+|.=||+|. +.++..+++. +.+|+.+|.+++.++.+.+..... + + .++++. .|..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 677788874 2344445544 679999999999998876543211 1 0 012222 222211
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
-...|+|+..-+ ....-...++.++.+.++|+..+.+.+.+
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145799886544 23333456778888888888776555444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=10 Score=33.77 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|-.|++ |.++..+++.+ .+++|+.+|.+++.++...+. .+. ++.++.+|+.+... . +
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LGE-RARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCC-eeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 35688888854 44555554433 278999999987654443332 232 68889999986421 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6799988764
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.9 Score=35.20 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=32.3
Q ss_pred EECCccc--HHHHHHH--HHCCCcEEEEEcCCHHHHHHHHHH--HHHcCC-CCeEEEEecc
Q 018346 135 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 188 (357)
Q Consensus 135 DiGcG~G--~~~~~la--~~~p~~~v~~vD~s~~~l~~a~~~--~~~~~~-~~v~~~~~d~ 188 (357)
|||++.| .....+. ...|+.+|+++|++|..++..+++ +..... ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 345788999999999999988888 544422 1355555443
|
; PDB: 2PY6_A. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.7 Score=40.40 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----CccccCc
Q 018346 125 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEASY 197 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~~f 197 (357)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+.+ .....++.+ ....+.+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998875 466777788876 54 78888888776655543 232111 111111111 1111468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+....- ...+....+.|+++|+++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988864221 24677788899999998754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=9.4 Score=34.74 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH-HHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~-~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||-.|++ |.++..+++.+ .+.+|+.++.++. ..+.........+. ++.++.+|+.+... .
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888864 44444444433 2788988887642 23333333333343 68889999876321 0
Q ss_pred cCccEEEEcccccc----h----------------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEH----M----------------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~----~----------------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+||.+..... + .....+++.+.+.++++|.+++...
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 35799987654311 1 1123455556666677777666443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.6 Score=41.65 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=50.7
Q ss_pred cCCCCeEEEEeccCCCcc---ccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 176 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 176 ~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.++++|+++.+++.+... ++++|.++....++++ ....+.++.+.+.++|||+++.-....+
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345799999999887532 4889999999999998 4577889999999999999999665443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.74 E-value=4 Score=39.89 Aligned_cols=100 Identities=7% Similarity=-0.002 Sum_probs=58.9
Q ss_pred HHHHHHHcCC-CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
++.+++..++ -.+++|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~----~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQAL----MEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHH----hcCC---eec--cHHHHH--h
Confidence 3344444333 3689999999984 44444444445 789999999886433222 2233 211 222211 4
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..|+|++...-. .-+.....+.+||||+++..-.
T Consensus 309 ~ADVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 579998743322 2234667789999999877543
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.73 E-value=2 Score=40.41 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=65.5
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc---cCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~I 200 (357)
+...+|.+|+|.+|-.|.-+..++.-.+ ..++.|+|.++.-.+..++.....|.+.++...+|+...+.+ ...-.|
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~i 288 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTYI 288 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeEE
Confidence 4456789999999999999999987653 579999999999999999999999988888889998874322 345567
Q ss_pred EEcccc
Q 018346 201 YSIEMF 206 (357)
Q Consensus 201 i~~~~~ 206 (357)
++.++.
T Consensus 289 L~Dpsc 294 (413)
T KOG2360|consen 289 LVDPSC 294 (413)
T ss_pred EeCCCC
Confidence 766654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.56 E-value=4 Score=34.45 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=61.6
Q ss_pred EEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cC----------CCCeEEEEeccCCCc
Q 018346 132 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE----------LQNVEIIVADISTFE 192 (357)
Q Consensus 132 ~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~----------~~~v~~~~~d~~~~~ 192 (357)
+|-=+|+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+.. .+ ..++. ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 35667887533 44444444 89999999999999888877654 11 12344 33454443
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
...|+|+=.- .+.++-.+++++++.+.+.|+-.+...+.+..
T Consensus 77 --~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 --VDADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 2578877543 45667778999999999999998777655443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.55 E-value=10 Score=35.28 Aligned_cols=99 Identities=15% Similarity=0.233 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEe-ccCC-Cc--ccc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DIST-FE--MEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~-d~~~-~~--~~~ 195 (357)
+...+.++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++. .|.+.+ ..... |..+ .. ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3456678899999986 5677888888876 78999999888765555432 344221 11111 1111 00 014
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-... ...+..+.++|+++|.++..
T Consensus 221 gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------HHHHHHHHHHhccCcEEEEe
Confidence 5888875321 24567788999999998864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.32 E-value=8.4 Score=36.35 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEcc
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIE 204 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~ 204 (357)
..++.+||-.|+| .|..+..+++.. ++++++++.+++....+ ++..|.+.+ +...+..... ..+.+|+|+-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~---~~~~Ga~~v-i~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEA---INRLGADSF-LVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhH---HHhCCCcEE-EcCCCHHHHHhhcCCCCEEEECC
Confidence 4577888889886 466777777776 78888888776533222 223443211 1011110110 013578887532
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ....+..+.+.|++||.++..-
T Consensus 256 g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 S------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred C------CHHHHHHHHHHhcCCcEEEEeC
Confidence 2 1235677888999999988653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=13 Score=33.17 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.++++|-.|+++ +.++..+++.+ .+++|+.++.+....+..++......-.++.++..|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999873 66666666554 378888886543211222222222211267888899876320 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
+++|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56899887654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=86.25 E-value=8.2 Score=35.47 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...|. +++ +..++... ..+|+||..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 578999999974 33333344444 78999999998754433 23333 222 11111111 568999986432
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.-+-+...+.++||++++-
T Consensus 221 ------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEEE
Confidence 1233456677899876553
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=10 Score=38.12 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=51.1
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHc-----CC---CCeEEEEeccCCCcc-
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM- 193 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~- 193 (357)
.+...+.+||-.|+ +|.++..+++.+ .+.+|++++.+.+.+....+.+... +. .++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456778887775 466666665543 3789999998887665443333221 11 258899999987421
Q ss_pred --c-cCccEEEEccc
Q 018346 194 --E-ASYDRIYSIEM 205 (357)
Q Consensus 194 --~-~~fD~Ii~~~~ 205 (357)
. +..|+||++..
T Consensus 154 ~~aLggiDiVVn~AG 168 (576)
T PLN03209 154 GPALGNASVVICCIG 168 (576)
T ss_pred HHHhcCCCEEEEccc
Confidence 1 56899988754
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=86.18 E-value=5.1 Score=29.98 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=46.8
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccch
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~ 209 (357)
.+|| +-||+|..+..++.+ .++.+++.|+ ++++...+..+.... ..+|+|+..+-+.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi~-- 61 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQVA-- 61 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchHH--
Confidence 4666 669998766655543 3455666777 677777776654322 5689999986553
Q ss_pred hhHHHHHHHHHHhcccCceEEEE
Q 018346 210 KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..++++.+.+.+-|.=+..
T Consensus 62 ----~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 62 ----YMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred ----HHHHHHHHHhhhcCCCEEE
Confidence 3345555555554444443
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.5 Score=34.94 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
...+.+||-+|.= +|.....+..+ .++|+.+|+.|.+ +... . ++|+|... .. +.++.+|+|+-...
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~----r~~l-p---~~v~Fr~~--~~-~~~G~~DlivDlTG 108 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM----RGFL-P---NNVKFRNL--LK-FIRGEVDLIVDLTG 108 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH----HhcC-C---CCccHhhh--cC-CCCCceeEEEeccc
Confidence 4567899999874 67776666655 6899999999975 2211 1 25666554 22 22378999998887
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+.++. ++++ +-+.| +.++++.|.....
T Consensus 109 lGG~~--Pe~L----~~fnp-~vfiVEdP~gn~~ 135 (254)
T COG4017 109 LGGIE--PEFL----AKFNP-KVFIVEDPKGNVF 135 (254)
T ss_pred cCCCC--HHHH----hccCC-ceEEEECCCCCCC
Confidence 77763 2333 33444 5677888766443
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.06 E-value=7 Score=36.90 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec----cCCCc---c
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFE---M 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d----~~~~~---~ 193 (357)
+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+.+ +-..+ +.+.. .
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATDC-VNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCEE-EcccccchHHHHHHHHHh
Confidence 44566788999999875 355666677766 66 79999999987766643 444211 11111 11100 0
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
.+.+|+|+-... -...+....+.|+++ |++++.-
T Consensus 254 ~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 254 DGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence 135898876321 124567778889887 9887653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=86.05 E-value=11 Score=34.87 Aligned_cols=95 Identities=18% Similarity=0.360 Sum_probs=59.1
Q ss_pred cCCCCC--CEEEEECC--cccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 125 SRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 125 ~~~~~~--~~vLDiGc--G~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
..+.++ .+||=.|+ |.|..+..+++.. ++ +|++++.+++..+.+++. .|.+.+ +..+-.++. .
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~v--i~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAA--INYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEE--EECCCCCHHHHHHHHC
Confidence 344444 78988885 5778888888886 77 899999988765555442 344221 211111110 0
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+.... . ..+..+.++|+++|+++..
T Consensus 222 ~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 222 PEGVDVYFDNVG-----G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEE
Confidence 135898885322 1 1346778899999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=86.00 E-value=4.6 Score=38.86 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEC-Cc-ccHHHHHHHHHCC-C-cEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEEe----ccCC--
Q 018346 125 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 190 (357)
Q Consensus 125 ~~~~~~~~vLDiG-cG-~G~~~~~la~~~p-~-~~v~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~----d~~~-- 190 (357)
..+.++.+||=+| +| .|..+..+++... + .+|+++|.+++.++.+++..... |. ...++.. |+.+
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4566788999887 34 6777787887641 2 37999999999888887642111 22 1112211 1111
Q ss_pred --CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 191 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 191 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
......+|+|+.... ....+....++++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 011135898886422 134667788899988876653
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.94 E-value=6.8 Score=37.24 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=58.4
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe----ccCC-Cc--cc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DIST-FE--ME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~----d~~~-~~--~~ 194 (357)
...+.++.+||-.|+| .|..+..+++.. ++ .|+++|.+++..+.+++ .|.+.+ +-.. ++.+ +. ..
T Consensus 188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~----lGa~~~-i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 188 VADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKT----FGVTDF-INPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCcEE-EcccccchHHHHHHHHHhC
Confidence 3456788999999875 355666677766 55 68899998887665543 444211 1111 1111 00 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 232 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 232 (357)
+.+|+|+-...- ...+....+.|++| |++++.
T Consensus 262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEE
Confidence 358888754321 23466777889998 998764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=6.3 Score=34.67 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=50.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~- 194 (357)
++.+||=.|+ +|.++..+++.+ .+++|++++.++..++...+.+...+..++.++..|+..... .
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 5778999985 566666655443 367999999998776666555555444467778888753210 1
Q ss_pred -cCccEEEEccc
Q 018346 195 -ASYDRIYSIEM 205 (357)
Q Consensus 195 -~~fD~Ii~~~~ 205 (357)
++.|.|+.+..
T Consensus 90 ~~~id~vi~~Ag 101 (247)
T PRK08945 90 FGRLDGVLHNAG 101 (247)
T ss_pred hCCCCEEEECCc
Confidence 46899988763
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.7 Score=34.75 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------------- 192 (357)
++++||-.|| +|.++..+++.+ .+.+|++++.++..++.....+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 3578999985 555555555443 37899999999887666655554433335566777765321
Q ss_pred cccCccEEEEccc
Q 018346 193 MEASYDRIYSIEM 205 (357)
Q Consensus 193 ~~~~fD~Ii~~~~ 205 (357)
..+..|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035798887664
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.4 Score=38.37 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec------cCCCcccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVAD------ISTFEMEA 195 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d------~~~~~~~~ 195 (357)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+.+ .++..+ +.......
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~--~~~~~~~~~~~~~~~~~~~~ 226 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGAD--DTINPKEEDVEKVRELTEGR 226 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCC--EEecCccccHHHHHHHhCCC
Confidence 34566788999998765 66777777775 665 999998887655443 23331 111111 11111113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+.... ....+..+.++|+++|.++...
T Consensus 227 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 4999986521 1345677889999999977643
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=85.69 E-value=6.7 Score=36.08 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC--C-CeEEEEeccCCCccc----------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL--Q-NVEIIVADISTFEME----------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~--~-~v~~~~~d~~~~~~~----------~ 195 (357)
...|+-+|||-=.=+..+- .| +.+|+-+|. |+.++.=++.++..+. + .++++..|+.+.... .
T Consensus 93 ~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLD--WPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecC--CCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 4789999999644333322 23 478888898 7777777777777664 2 689999999842211 2
Q ss_pred CccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.-=++++-+++.++ +...++++.+.....||..++....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 23478888888888 4577899999999999999888764
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.57 E-value=5 Score=36.96 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEECC-cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEE-EeccCCCccccCccE
Q 018346 123 ERSRLEDGHTVLDVGC-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDR 199 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc-G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~fD~ 199 (357)
...+..||++|-=+|. |-|.++..+|+.. +.+|+++|-|..--+ +.++..|.+. +.+. ..|..+- ..+..|.
T Consensus 175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kke---ea~~~LGAd~fv~~~~d~d~~~~-~~~~~dg 249 (360)
T KOG0023|consen 175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKE---EAIKSLGADVFVDSTEDPDIMKA-IMKTTDG 249 (360)
T ss_pred HHcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHH---HHHHhcCcceeEEecCCHHHHHH-HHHhhcC
Confidence 3456678888777775 4899999999998 899999999875333 3333455431 1111 1111110 0133444
Q ss_pred EEEccc-ccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEM-FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++-.-+ + ....++.+.++||++|.+++.-...
T Consensus 250 ~~~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 250 GIDTVSNL-----AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred cceeeeec-----cccchHHHHHHhhcCCEEEEEeCcC
Confidence 332111 1 2344667788999999998865433
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=85.50 E-value=6.9 Score=33.04 Aligned_cols=79 Identities=8% Similarity=0.028 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCCcc----------ccC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~----------~~~ 196 (357)
...|+.+|||-=.....+....++..++-+|. |+.++.-++.++..+. .+.+++.+|+.+... .+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34899999999888888887655788899998 6667666666655422 135679999986321 123
Q ss_pred ccEEEEcccccch
Q 018346 197 YDRIYSIEMFEHM 209 (357)
Q Consensus 197 fD~Ii~~~~~~~~ 209 (357)
.-++++-.++.++
T Consensus 158 ptl~i~Egvl~Yl 170 (183)
T PF04072_consen 158 PTLFIAEGVLMYL 170 (183)
T ss_dssp EEEEEEESSGGGS
T ss_pred CeEEEEcchhhcC
Confidence 4477788888888
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=5.9 Score=34.73 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=49.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
++.++|-.|+ +|.++..+++.+ .+.+|+.++.++..++.+.+.....+. ++.++..|+.+... . +
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678898885 455555555433 267999999998776666555554443 78888999876311 0 3
Q ss_pred CccEEEEccc
Q 018346 196 SYDRIYSIEM 205 (357)
Q Consensus 196 ~fD~Ii~~~~ 205 (357)
.+|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799998764
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.27 E-value=7.2 Score=35.43 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=58.8
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-------HHcCC-C---------CeEEEEeccCCC
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL-Q---------NVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-------~~~~~-~---------~v~~~~~d~~~~ 191 (357)
.+|-=||+|. +.++..++.. +.+|+++|++++.++.+++.+ .+.+. + ++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3677788884 4455555555 679999999999987655332 22221 1 2222 223221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
....|+|+..-+ +.+.-...+++++.+.++|+..+...+.
T Consensus 80 --~~~aDlVi~av~-e~~~~k~~~~~~l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 --LKDADLVIEAAT-ENMDLKKKIFAQLDEIAKPEAILATNTS 119 (282)
T ss_pred --hccCCeeeeccc-ccHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 145798887532 2333346889999999999887644333
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=85.18 E-value=1.1 Score=37.43 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC--------------CCc-
Q 018346 129 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS--------------TFE- 192 (357)
Q Consensus 129 ~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~--------------~~~- 192 (357)
++.+|+=+|.| .|.-+..++..+ +++++..|..+..++.... .+ ..++..+.. +.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~----~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLES----LG---AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHH----TT---TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhc----cc---CceEEEcccccccccccchhhhhHHHH
Confidence 46899999998 466777777777 7899999999886554433 22 122222210 001
Q ss_pred -----cc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceE
Q 018346 193 -----ME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 193 -----~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l 229 (357)
+. ..+|+|+.+..+..-..+.-+-++..+.|+||..+
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceE
Confidence 11 45899998776654445555566677888866653
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=85.01 E-value=12 Score=35.78 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=61.4
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe---ccCC----Cccc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---d~~~----~~~~ 194 (357)
...+.++.+||=.|+| .|..+..+++.. +++ ++.+|.+++.++.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3556778888888876 455666677766 554 6677888877666654 3442 12111 1111 0111
Q ss_pred cCccEEEEcccccc-------h-hhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~-------~-~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|+|+-...... . .+....++...+.+++||.+++.-.
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898885433210 0 1123578888899999999988554
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=84.99 E-value=1.7 Score=38.63 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=61.9
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----CccccCccEEEEcccccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~Ii~~~~~~~ 208 (357)
|..-+||-.++..+.+. .-+.+.+|+-+.-.+..++++... .+|.+...|..+ +|+..+=-+|+..++++.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 77888988888888765 679999999999888887776542 389999999765 233344578999999998
Q ss_pred hhhHHHHHHHHHHhcc--cCceEEEEec
Q 018346 209 MKNYQNLLKKISKWMK--EDTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~ 234 (357)
-.++.++.+.+.+.+| |.|++++=-|
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 8899999888888887 7888777444
|
; PDB: 2OO3_A. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.91 E-value=13 Score=33.87 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=58.7
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CC----------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~----------~~v~~~~~d~~~~ 191 (357)
.+|.=||+|.-+ ++..++.. +.+|+..|.+++.++.+.+..... +. .++++. .|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh
Confidence 478888988543 44444544 779999999999888765433221 21 123322 233211
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
...|+|+..-+ +...-...+++.+...++|+..++..+.+
T Consensus 82 ---~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 82 ---ADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred ---cCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 45798887533 22223456788888899998876544433
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=84.82 E-value=10 Score=36.56 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=54.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..+++|+=+|+|. |......++.+ +++|+++|.++.....+. ..|. .+ .++.+. -...|+|++...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~----~~G~---~v--~~leea--l~~aDVVItaTG- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAA----MDGF---RV--MTMEEA--AKIGDIFITATG- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHH----hcCC---Ee--CCHHHH--HhcCCEEEECCC-
Confidence 4688999999996 44444455555 789999999886433222 2232 21 122221 145799887532
Q ss_pred cchhhHHHHHH-HHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLK-KISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 234 (357)
...++. .....+|||++++....
T Consensus 260 -----~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 260 -----NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -----CHHHHHHHHHhcCCCCcEEEEECC
Confidence 234444 47788999998877533
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=8.8 Score=37.16 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=53.1
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.+.+|+=+|+|. |......++.+ +++|+.+|.++.....+. ..|. ++ .++.+.. ..+|+|+....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~----~~G~---~v--~~l~eal--~~aDVVI~aTG-- 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAA----MDGF---RV--MTMEEAA--ELGDIFVTATG-- 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHH----hcCC---Ee--cCHHHHH--hCCCEEEECCC--
Confidence 688999999985 33333344444 789999999986533222 1232 21 1222211 46899987532
Q ss_pred chhhHHHHHH-HHHHhcccCceEEEEe
Q 018346 208 HMKNYQNLLK-KISKWMKEDTLLFVHH 233 (357)
Q Consensus 208 ~~~~~~~~l~-~~~~~LkpgG~l~~~~ 233 (357)
. ..++. .....+|+|++++..-
T Consensus 277 ---~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 277 ---N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 1 33454 5778899999877643
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.66 E-value=16 Score=34.37 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEec--cCC-C--ccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-F--EME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d--~~~-~--~~~ 194 (357)
+...+.++.+||=.|+| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....+ +.+ + ...
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 44556788999999875 355666677776 66 79999999887666643 343221 111100 000 0 001
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 234 (357)
..+|+|+-...- ...+....+.|+++ |.+++...
T Consensus 253 ~g~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFECTGN------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhcccCCCEEEEEcC
Confidence 358988853221 24567778889885 98877543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.58 E-value=11 Score=35.31 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=56.5
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEEecc-------CCCccccCc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVE-IIVADI-------STFEMEASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~-~~~~d~-------~~~~~~~~f 197 (357)
.++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+- ....+. .+......+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 377888888865 355566677776 67 8999998887655443 34442211 111111 011111468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+....- ...+....+.|+++|.++..-
T Consensus 251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence 988864211 235667788999999987643
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=17 Score=32.45 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCCEEEEECCccc-HHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=.|+++| .++..+++.+ .+++|+.++.+....+.+.+ ..... ..+.++.+|+.+... .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 4678999998763 5555555443 37888888876432222222 22221 245678889876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+++|++|.+..+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 468999988753
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=16 Score=33.40 Aligned_cols=102 Identities=10% Similarity=0.054 Sum_probs=59.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH--HHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~--~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~- 194 (357)
.+++||=.|+ +|.++..+++.+ .+.+|+.+..+.. ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578888885 455555555443 3678887765432 22333333333343 67888899886321 0
Q ss_pred -cCccEEEEcccccc----h-----hh-----------HHHHHHHHHHhcccCceEEEE
Q 018346 195 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+..|++|.+..... + ++ .-.+++.+.+.++++|.++..
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 36899998775421 1 11 223556666777788876664
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.99 E-value=9.8 Score=39.39 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=63.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----cc------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----ME------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~------~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+.+|+++|.++..++.+.+..... .++.++.+|+.+.. .. +
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578888875 344555544432 2779999999998766655544332 37888999987632 00 3
Q ss_pred CccEEEEcccccch-------------------hhHHHHHHHHHHhccc---CceEEEEec
Q 018346 196 SYDRIYSIEMFEHM-------------------KNYQNLLKKISKWMKE---DTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~-------------------~~~~~~l~~~~~~Lkp---gG~l~~~~~ 234 (357)
.+|+||.+...... .....+++.+.+.+++ ||.+++...
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 68999987753211 0133456666777766 577666543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=16 Score=32.34 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++.++|-.|++ |.++..+++.+ .+.+|++++-+++.++...+... +. ++.++.+|+.+... . +
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA-KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67899988875 66666655443 26789999988776554433322 12 56888899876321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
++|.|+.+...
T Consensus 86 ~~d~vi~~ag~ 96 (264)
T PRK12829 86 GLDVLVNNAGI 96 (264)
T ss_pred CCCEEEECCCC
Confidence 68999976643
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=8.4 Score=34.00 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+++|++++.++..++...+.....+. ++.++..|+.+... . +
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4578887776 445555544433 278999999988876666555544443 68889999876321 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999987743
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=19 Score=31.85 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------ccC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------EAS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~~~ 196 (357)
++.+||=.|++. .++..+++.+ .+.+|++++.+++.++...... ..+ .++.++.+|+.+... .+.
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356788887654 4444444332 2789999999887766555444 222 278889999877421 035
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|.|+.+...
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999987654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=83.42 E-value=22 Score=33.87 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHH----HHHHHHHC---CCcEEEEEcC----CHHHHHHHHHHHH----HcCCCCeEEEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSL----SLYIAQKY---SNCKITGICN----SKTQKEFIEEQCR----VLELQNVEIIV 185 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~----~~~la~~~---p~~~v~~vD~----s~~~l~~a~~~~~----~~~~~~v~~~~ 185 (357)
+++...-.+...|+|+|.|.|.- ...|+.+- |..++||++. +...++.+.+++. ..|+ ..+|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEe
Confidence 44444445678999999999963 34444432 4469999999 7888877777654 3455 444444
Q ss_pred e---ccCCCccc----cCccEEEE--cccccchh-------h-HHHHHHHHHHhcccCceEEEEeccC
Q 018346 186 A---DISTFEME----ASYDRIYS--IEMFEHMK-------N-YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 186 ~---d~~~~~~~----~~fD~Ii~--~~~~~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. ++.++... ..=+.++. ...+|++. + ...+++.+ +.|+|.-+++++.-..
T Consensus 181 v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ea~ 247 (374)
T PF03514_consen 181 VVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQEAD 247 (374)
T ss_pred cccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEeecCC
Confidence 2 33333211 12233333 33456663 1 23355554 5789997777765543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.29 E-value=4.4 Score=37.85 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=60.5
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
......++.+||=.|+| .|..+..+++.. ++ .|++++.+++..+.+++ .|.+.+ .....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44556778888888864 355666677766 66 89999998887666643 343211 111111111 11113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-.... ...++.+.+.|+++|.++..-
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48998865321 235677888999999987643
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=7.9 Score=34.12 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=48.5
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----ccCccEEEEc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~Ii~~ 203 (357)
.+||-.|+ +|.++..+++.+ .+++|++++-++...+.........+. ++.++.+|+.+... ....|+|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 46887776 455555555443 378999998887766555554444444 68889999876421 1378999987
Q ss_pred cc
Q 018346 204 EM 205 (357)
Q Consensus 204 ~~ 205 (357)
..
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.18 E-value=32 Score=31.53 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=57.8
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
....+.++.+||=.|||. |..+..+++.. +.+|++++.+++..+.++ ..|.+ .++ +.... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~--~~~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAG--DSDDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEe--ccCcc-CCCcccEEE
Confidence 445566778888887752 33445556554 789999998887555542 23431 111 11111 124588877
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..... ...++.+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 54221 246788899999999988643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=82.95 E-value=3.8 Score=38.35 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=60.6
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCC----Ccccc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST----FEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~----~~~~~ 195 (357)
....+.++.+||-.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+..+ .....
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 44556778899999876 456666777766 55 69999999876665553 343211 111111100 11113
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+....- ...+..+.++|+++|+++..
T Consensus 235 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGGG------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 58988853221 24677888999999998754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=8 Score=33.80 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
..+++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV-KAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567888885 566666665543 367999999988766655554444333 78889999987421 1 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999987654
|
|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=82.74 E-value=6.3 Score=29.51 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=44.3
Q ss_pred ECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchhhHHH
Q 018346 136 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 214 (357)
Q Consensus 136 iGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~ 214 (357)
+.||+|.-+..+++. .++.++..|+ .+++...+..+.... ..+|+|++.+-+ ..
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~Pqv------~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGPQV------RY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEEChhH------HH
Confidence 458888776655543 3566667777 577777777654322 679999987644 33
Q ss_pred HHHHHHHhcccCceEEEE
Q 018346 215 LLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 215 ~l~~~~~~LkpgG~l~~~ 232 (357)
.++++.+...+.+.-+..
T Consensus 59 ~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 59 MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHhccCCCcEEE
Confidence 455555544444543443
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=82.70 E-value=24 Score=28.61 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=47.2
Q ss_pred EEEEECCcccHHHHHHHHHC---CCcEEEEEcCC--HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------cc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY---SNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 195 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s--~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 195 (357)
++|=.|++ +.++..+++.+ .+..|+.+.-+ .+..+......+..+ .++.++.+|+.+... .+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 56667766 44444444432 24578888887 555555555566556 489999999886320 15
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|++|.+...
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 79999987744
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.48 E-value=21 Score=33.03 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=59.9
Q ss_pred HcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---c-ccCcc
Q 018346 124 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---M-EASYD 198 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~-~~~fD 198 (357)
...+.++.+||=.||| .|..+..+++.. +.++++++.+++.++.+++ .|.+. ++...-.+.. . ...+|
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~--~i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK----LGAHH--YIDTSKEDVAEALQELGGAK 230 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----cCCcE--EecCCCccHHHHHHhcCCCC
Confidence 3456678899999865 455666677766 7789999998876665533 34321 1111111110 0 13478
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++.... ....+..+.+.|+++|.++....
T Consensus 231 ~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 231 LILATAP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred EEEECCC------chHHHHHHHHHcccCCEEEEEec
Confidence 8885321 13467778889999999876543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.48 E-value=3.9 Score=38.58 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=59.8
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------ccc
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEA 195 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~ 195 (357)
...+.++.+||-.|+|. |..+..+++.. +. .++++|.++...+.+++ .+.+ .++..+-.++. ...
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~ 253 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREITGG 253 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHhCC
Confidence 34566788999988753 66777777776 56 69999999887665543 3331 11111111100 024
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+-...- ...+..+.+.|+++|.++...
T Consensus 254 ~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 254 GVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 58988864221 235677888999999987643
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=18 Score=31.99 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=46.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++++|-.|.++ +.++..+++.+ .+++|+.++.+....+.+++. .+ .++.++.+|+.+... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD-EEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc-CceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467899888874 56666665554 378999888764322222211 11 267888999876320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+++|+++.+..+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 468999987654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=18 Score=31.39 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
+++||=.|+ +|.++..+++.+ .+.+++.+ +-+++..+.........+. ++.++..|+.+... . +
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG-DAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457777774 667777666543 36788888 8887766655555444332 68899999886421 0 2
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
.+|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999987644
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.26 E-value=25 Score=33.06 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEccc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~~ 205 (357)
.++.+||-.|+| .|..+..+++.. ++++++++.+++....+.+ ..|.+.+ +...+...+. ....+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~---~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALE---HLGADDY-LVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH---hcCCcEE-ecCCChHHHHHhcCCCcEEEECCC
Confidence 467888888765 466667777776 7788888887765443322 2444211 1111111110 0134788775422
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+..+.+.|+++|+++..-
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1245677788999999987753
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.25 E-value=16 Score=33.61 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-c---cCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-E---ASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~---~~fD~Ii 201 (357)
.+++||-.| |+|.++..+++.+ .+.+|++++.++.............+. .+++++.+|+.+... . ...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 467888887 6777777777654 367887776655433222222111122 368899999987431 1 4589988
Q ss_pred Ecccc
Q 018346 202 SIEMF 206 (357)
Q Consensus 202 ~~~~~ 206 (357)
.+...
T Consensus 83 h~A~~ 87 (325)
T PLN02989 83 HTASP 87 (325)
T ss_pred EeCCC
Confidence 77643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=19 Score=34.28 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADIS 189 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~ 189 (357)
.+.+.+++.+.+.. . . .+|+-++=..|.++..++...|. ...|. --.-...+.|+..++++ .+++. +..
T Consensus 30 aade~ll~~~~~~~-~-~-~~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~ 100 (378)
T PRK15001 30 AADEYLLQQLDDTE-I-R-GPVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFL--DST 100 (378)
T ss_pred cHHHHHHHHHhhcc-c-C-CCEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceee--ccc
Confidence 33444555544321 1 1 27999999999999999965331 22342 22333456788888874 34444 333
Q ss_pred CCccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 190 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+ ++++.+|+|+...+=. .......+..+.++|.||+.+++..-
T Consensus 101 ~-~~~~~~d~vl~~~PK~-~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 101 A-DYPQQPGVVLIKVPKT-LALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred c-cccCCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 3 2236699998866532 23456678888999999999876433
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=18 Score=32.95 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
.+++||-.|++ |.++..+++.+ .+++|+.++.+++.++...+.... + ..+..+.+|+.+... . +
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888754 45555554443 378999999988876655443321 1 255666688876310 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|++|.+...
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999988754
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.14 E-value=22 Score=31.33 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC----HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS----KTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s----~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 193 (357)
.++++|=.|+ +|.++..+++.+ .+.+|+.++.+ .+..+...+.....+. ++.++..|+.+...
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHH
Confidence 3568888885 555666666554 36676666532 2333333333333333 68889999876321
Q ss_pred -c-cCccEEEEcccccc------h--hh-----------HHHHHHHHHHhcccCceEEEE
Q 018346 194 -E-ASYDRIYSIEMFEH------M--KN-----------YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~------~--~~-----------~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. +..|+++.+..... . ++ .-.+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 0 36899998775411 1 11 123456666677777776543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.00 E-value=6.8 Score=35.57 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=50.0
Q ss_pred EEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch
Q 018346 132 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 132 ~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+ .|. +.....+.. . ....|+|+..-+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~-~--~~~aDlVilavp~~~~ 70 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS-L--LKDCDLVILALPIGLL 70 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh-H--hcCCCEEEEcCCHHHH
Confidence 466678774 4455555544 6799999999987666543 232 111111111 1 1457999987665433
Q ss_pred hhHHHHHHHHHHhcccCceE
Q 018346 210 KNYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l 229 (357)
.++++++...++|+..+
T Consensus 71 ---~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 71 ---LPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHhCCCCcEE
Confidence 45677787778776433
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.94 E-value=13 Score=33.88 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=63.1
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cCC----------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL----------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~~----------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+ +.++..++.. +..|+..|.+++.++.+.+++.. .|. .++++ ..|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh
Confidence 4788889984 3455555544 88999999999999887665432 111 12222 2333211
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhc-ccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~ 236 (357)
...|+|+-. +.+..+-...++..+.+.+ +|+..+...+.+.
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 457888865 4556666677888888888 7777665545443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.93 E-value=8.4 Score=34.01 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
++++||-.|+ +|.++..+++.+ .+++|+.++.+++.++...+..+..+. ++.++.+|+.+... . +
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678888885 555566555443 378999999998777666555555443 68889999876321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|.|+.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 57888877643
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.91 E-value=3.9 Score=37.05 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=37.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
+..+.+|.-||+|.-++..++++. .++|.+||+++..++.-+-++..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHHH
Confidence 457889999999977777777765 57999999999998876665543
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=30 Score=31.18 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.++.+|=.|+++ +.++..+++.+ .+++|+.++.+....+.+.+.....+. . .++.+|+.+... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367899999863 45555555443 278999888875422223332233332 3 567889887421 1
Q ss_pred cCccEEEEcccccc-------h-----hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEH-------M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~-------~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+|++|.+..+.. + ++ +-.+.+.+.+.++.+|.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 56899998875421 1 11 1224455666777778766543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=8.2 Score=34.09 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.+++||=.|+ +|.++..+++.+ .+.+|++++.++..++...+.....+. ++.++.+|+.+... . +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678998884 666666666543 378999999998877666655555443 68888899876320 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+|+.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 58999987754
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.48 E-value=6.7 Score=35.76 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.++..++.. ...++..|||.-+|+|..+...... +-.++|+|+++..++.+.++....
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 345555554 4567899999999999999877765 779999999999999999988754
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.09 E-value=10 Score=36.06 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEEeccCCCc-cccCccEEEEcc
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~-l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~Ii~~~ 204 (357)
.++.+||=.|+| .|..+..+++.. +++|++++.+++. .+.+ +..|.+.+ +...+..... ..+.+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a----~~lGa~~~-i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAI----DRLGADSF-LVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHH----HhCCCcEE-EcCcCHHHHHHhhCCCcEEEECC
Confidence 467889988886 466667777776 7889999887653 2222 33454211 1001100110 013478887642
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ....+..+.+.+++||.++..-
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEEc
Confidence 2 1235677788999999988653
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=81.02 E-value=7.4 Score=40.64 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=67.7
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C-C---------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L---------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+= .++..++.. +..|+.+|.+++.++.+.+++... + + .++++. .|+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 57889999863 344445544 889999999999998877665432 1 1 133332 232221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+||=. +.+.++-..++++++.++++|+.++...+.+.
T Consensus 413 ---~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 413 ---KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred ---ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 457877754 67777778899999999999999887655544
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=28 Score=30.68 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------cc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 195 (357)
.++++|-.|+++ .++..+++.+ .+++|+.++.+.. +...+.....+. ++.++..|+.+... .+
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 467899888654 5555555433 3789998876542 223333333333 68889999887420 04
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|+++.+...
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 68999987643
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=80.76 E-value=9.7 Score=39.64 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=67.7
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+= .++..++.. +..|+.+|.+++.++.+++++... + +.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 47888999963 344445544 889999999999998877655321 1 1133332 122111
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+|+=. +.+.++-..+++.++-++++|+.+|.-.+.+.
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 391 ---DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred ---cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 457888754 67777778899999999999998877655544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=18 Score=32.03 Aligned_cols=72 Identities=7% Similarity=0.070 Sum_probs=46.6
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------------ccC
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------EAS 196 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~ 196 (357)
+++|-.|++ |.++..+++.+ .+.+|++++.+++.++....... + .++.++.+|+.+... .++
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357777755 45555554433 37899999998886665544332 2 278899999986320 135
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
+|+|+.+...
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7999987754
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=80.52 E-value=15 Score=32.10 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=57.7
Q ss_pred CCc-ccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----------cc-cCccEEE
Q 018346 137 GCG-WGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----------ME-ASYDRIY 201 (357)
Q Consensus 137 GcG-~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~~-~~fD~Ii 201 (357)
|+| ++.++..+++.+ .+++|+.++.+++.++...+.+.... ...++.+|+.+.. .. +..|++|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV 78 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY--GAEVIQCDLSDEESVEALFDEAVERFGGRIDILV 78 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT--TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc--CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence 455 344444444332 28999999999998655544444332 2346899987632 01 5679888
Q ss_pred Ecccccch------------hh-----------HHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHM------------KN-----------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~------------~~-----------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+...... ++ ...+.+.+.+.++++|.+++....
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 76532211 01 344566667788888887776544
|
... |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=9.4 Score=33.42 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------ccCccEE
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------EASYDRI 200 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD~I 200 (357)
++|+-.|+ +|.++..+++.+ .+.+|++++.+++..+...+.....+..++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 46787774 466666555443 267999999988766555444433333378999999887421 1347999
Q ss_pred EEcc
Q 018346 201 YSIE 204 (357)
Q Consensus 201 i~~~ 204 (357)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8765
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.28 E-value=11 Score=39.25 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=67.6
Q ss_pred CEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 191 (357)
.+|.=||+|+= .++..++.. +..|+.+|.+++.++.+.+++... | +.++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 57999999973 345555544 899999999999998876654321 1 1234432 233221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...|+||=. +.+.++-..+++.++.++++|+.++.-.+.+.
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 ---ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred ---cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 457877754 56777778899999999999998876655544
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.25 E-value=10 Score=39.43 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C----------CCCeEEEEeccCC
Q 018346 130 GHTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 190 (357)
Q Consensus 130 ~~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 190 (357)
-.+|.=||+|+ ..++..++.. .+..|+..|.+++.++.+.+++... + ..++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 36799999997 3345545523 2789999999999998886655331 1 1234433 22221
Q ss_pred CccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 191 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 191 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ ...|+|+=. +.+.++-..+++.++.+.++|+.++.-.+.+.
T Consensus 387 ~---~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l 428 (708)
T PRK11154 387 F---KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSL 428 (708)
T ss_pred h---ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 457887754 56777778899999999999998877655543
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=14 Score=32.79 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=49.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------c-cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~fD~ 199 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++.+...+......++.++..|+.+... . ++.|+
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 35788888864 44555544332 278999999988877666555544322368888899876321 1 56899
Q ss_pred EEEccc
Q 018346 200 IYSIEM 205 (357)
Q Consensus 200 Ii~~~~ 205 (357)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 357 | ||||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 7e-18 | ||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-17 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-17 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 1e-16 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 5e-15 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 2e-14 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 5e-07 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 1e-06 |
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 3e-52
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 21/261 (8%)
Query: 61 AHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLEL 120
L+ +Q HY+L FF+L L YSC YF TL++A+ A ++L
Sbjct: 2 PDELKPHFANVQ------AHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDL 55
Query: 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN 180
+ L+ G T+LDVGCGWG+ + +KY + + G+ SK Q +++ E
Sbjct: 56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLR 114
Query: 181 -VEIIVADISTFEMEASYDRIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLFVH----- 232
+++A + + DRI SI FEH + Y + + D ++ +H
Sbjct: 115 SKRVLLAGWE--QFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172
Query: 233 ---HFCHKTFAYHFEDTNDDDWITKYFFTGGTMPS-ANLLLYFQDDVSVVDHWLVNGKHY 288
+ F +I F GG +PS + + V HY
Sbjct: 173 HPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHY 232
Query: 289 AQTSEEWLKRMDNNLASIKPI 309
A+T + W + N +
Sbjct: 233 AKTLDLWSAALQANKGQAIAL 253
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 3e-50
Identities = 59/252 (23%), Positives = 96/252 (38%), Gaps = 22/252 (8%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 21 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 80
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 196
CGWGS + +Y + + G+ S+ Q + ++ E+ + E +
Sbjct: 81 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--EFDEP 137
Query: 197 YDRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVH--------HFCHKTF 239
DRI S+ FEH + Y KK +D + +H
Sbjct: 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGL 197
Query: 240 AYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLKR 298
+I F GG +P + + Y+ + V+ + G +Y T W
Sbjct: 198 TSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADA 257
Query: 299 MDNNLASIKPIM 310
+ + +
Sbjct: 258 LQAHKDEAIALK 269
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 8e-50
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 18/268 (6%)
Query: 57 LLQFAHSLREMPIAIQTDKAKE---QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDA 113
+ + +H + +T E HY++ FF L YSC YF TLE+A
Sbjct: 15 VPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEA 74
Query: 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC 173
+ A ++L ++ L+ G T+LD+GCGWG+ +++ + + G+ SK Q E+
Sbjct: 75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVL 133
Query: 174 RVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEH--MKNYQNLLKKISKWMKEDTLLF 230
++ ++++ + DRI SIE FEH +NY + K+ M D +
Sbjct: 134 ASIDTNRSRQVLLQGWE--DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT 191
Query: 231 VH--------HFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVS-VVDHW 281
V + FE +I F GG +PS +++ + V
Sbjct: 192 VQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEP 251
Query: 282 LVNGKHYAQTSEEWLKRMDNNLASIKPI 309
L HY +T W + +N +
Sbjct: 252 LSLRPHYIKTLRIWGDTLQSNKDKAIEV 279
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-39
Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 26/263 (9%)
Query: 79 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGC 138
Q Y+ T F + G+ + + A +++DA + + + G VLDVGC
Sbjct: 11 QMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGC 70
Query: 139 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS--TFEMEA 195
G G ++ +A + ++TGI S+ Q + L N V AD FE +A
Sbjct: 71 GIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE-DA 128
Query: 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
S+D ++++E HM + L+++++ ++ + + F
Sbjct: 129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA-----PVEGAKKEAVDA 183
Query: 256 FFTGGTMPSANLLLYFQD--------DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 307
F GG + S + ++ S VD + + + +N + ++
Sbjct: 184 FRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI----SAQARPSLVKTAEAFENARSQVE 239
Query: 308 PIMESTYGKDQAVKWTVYWRTFF 330
P G + + +R
Sbjct: 240 PF----MGAEGLDRMIATFRGLA 258
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-36
Identities = 29/257 (11%), Positives = 73/257 (28%), Gaps = 21/257 (8%)
Query: 98 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 157
++ + R++ G +LD+G G G + A+ + T
Sbjct: 7 FTISESEHR--IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGT 63
Query: 158 GICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLL 216
GI S + + L + V I D + + D + +
Sbjct: 64 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 123
Query: 217 KKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPS-ANLLLYFQDDV 275
+ +++ +K ++ + + ++ + + L+ F D
Sbjct: 124 ELLAQSLKPGGIMLIGEPYWRQ-----LPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 178
Query: 276 SVVDHWLVNG-----KHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWR--- 327
V ++ ++ A + ++ N ++ Y R
Sbjct: 179 YDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 238
Query: 328 --TFFIAVAEL-FGYNN 341
F +A L +++
Sbjct: 239 GWGVFALIARLEHHHHH 255
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-32
Identities = 51/298 (17%), Positives = 91/298 (30%), Gaps = 40/298 (13%)
Query: 63 SLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYC 122
+L E + +T Q+ + ++ + G+ + + +
Sbjct: 2 TLIENLNSDKTFLENNQYTDEGVKVYEFIFGENY-------------ISSGGLEATKKIL 48
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
L + VLD+G G G +YI +KY GI E RV +
Sbjct: 49 SDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANE--RVSGNNKII 105
Query: 183 IIVADISTFEME-ASYDRIYSIEMFE--HMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239
DI T E ++D IYS + ++N L +K KW+K L + +C
Sbjct: 106 FEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT-- 163
Query: 240 AYHFEDTNDDDWITKYFFTGG-TMPSANLLLYFQDDVS-VVDHWLVNGKHYAQTSEEWLK 297
E N DD +Y T+ + + ++ Q E K
Sbjct: 164 ----EKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHK 219
Query: 298 RMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGE-EWMVTHFLFRK 354
+ N + + + + + W + W +F K
Sbjct: 220 YLHENKEEFLKL----FSEKKFISLDDGWSRK------IKDSKRKMQRWG--YFKATK 265
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-32
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 17/242 (7%)
Query: 80 HYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER-SRLEDGHTVLDVGC 138
HY + + L E A E + + T++D GC
Sbjct: 70 HYGIGPVDRAALGDPEHSEYEKKVIA---ELHRLESAQAEFLMDHLGQAGPDDTLVDAGC 126
Query: 139 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASY 197
G G + +++ ++ G+ S Q +F + R L + + V V ++ +
Sbjct: 127 GRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML--DTPFDK 183
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY 255
+ + E + +L + S+++K C + + + I +
Sbjct: 184 GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN--PRYGQPSKWVSQINAH 241
Query: 256 FFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS-IKPIMESTY 314
F + S L D +V H +V+ T W R ++L + I+ +Y
Sbjct: 242 FECN--IHSRREYLRAMADNRLVPHTIVD--LTPDTLPYWELRATSSLVTGIEKAFIESY 297
Query: 315 GK 316
Sbjct: 298 RD 299
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 3e-30
Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 39/293 (13%)
Query: 78 EQHYELPTS--FFKLVLGKYFKYSCCYFSDAS-KTLEDAEKAMLELYCER----SRLEDG 130
E +Y+ S F+ V G + Y + +A E L+
Sbjct: 24 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 83
Query: 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS 189
LD+G G+G + ++ +K+ I + + Q + EE L + + +
Sbjct: 84 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 142
Query: 190 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
E SYD I+S + F H + + ++ ++ +K ++ + + + ++
Sbjct: 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE---DGIDKSSI 199
Query: 249 DDWITKYFFTGGTMPSANLLLYFQ-------DDVSVVDHWLVNGKHYAQTSEEWLKRMDN 301
+ + M S LY + + +
Sbjct: 200 QPILDRIKLHD--MGSLG--LYRSLAKECGLVTLRTFSR----PDSLVHHYSKVKAELIK 251
Query: 302 NLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
+ I + + + + G G+ LFRK
Sbjct: 252 RSSEIASFCSPEFQANMKRGLEHW----------IEGGRAGKLTWG-GMLFRK 293
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 8e-24
Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 14/184 (7%)
Query: 102 YFSDASKTLEDAEKAMLELYCER--------SRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153
F S ++ + + + + S + +LD+G G G LS ++ +KY
Sbjct: 9 KFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE 68
Query: 154 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN-- 211
T + S+ E + + R V+ I AD S ++ E YD + S H+++
Sbjct: 69 ATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDED 126
Query: 212 YQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF 271
+ L K+ +KE + H A+ E+ N W +Y G Y
Sbjct: 127 KKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIW-RQYVENSGLTEEEIAAGYE 184
Query: 272 QDDV 275
+ +
Sbjct: 185 RSKL 188
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 4e-18
Identities = 44/258 (17%), Positives = 95/258 (36%), Gaps = 26/258 (10%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
Y + L + + + +L + G VL+ GCG G+ ++ +A+ + +IT I
Sbjct: 10 YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDI 69
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 219
S E E ++NV+ + A+I + FE ++S+D I+ + EH+++ + LK +
Sbjct: 70 SPESLEKARENTEKNGIKNVKFLQANIFSLPFE-DSSFDHIFVCFVLEHLQSPEEALKSL 128
Query: 220 SKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYF-----FTGGTMPSANLLLYFQD- 273
K +K + V H + +H E + G ++ + Q+
Sbjct: 129 KKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188
Query: 274 ---DVSVVDHWLVNGKHYAQTSEEWLKRMDNNL-ASIKPIMESTYG--KDQAVKWTVYWR 327
+ V + + + ++ + + +K +++ K
Sbjct: 189 GFEKIRVEPRMVYIDSSKPELVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELH 248
Query: 328 -----------TFFIAVA 334
TFF
Sbjct: 249 KTAEHGGTFCYTFFKGWG 266
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 5e-17
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 95 YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154
F + C YF + + +A + + L D + D+GCG G +L++A
Sbjct: 12 DFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV-KG 70
Query: 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 212
+ITGI E E V+ I + + D I+S ++ +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GF 129
Query: 213 QNLLKKISKWMKEDTLLFVHHFCHKT 238
+ + + SK++K+ + V T
Sbjct: 130 ERGMNEWSKYLKKGGFIAVSEASWFT 155
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 9e-14
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175
A+ + +++ VLD+GCG G SLY++ +T +++ F+ E
Sbjct: 107 AIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEK 164
Query: 176 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233
L N+ + DI+ ++ +YD I S +F + + +++K + + +
Sbjct: 165 ENL-NISTALYDINAANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
Query: 234 F 234
Sbjct: 224 A 224
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 187
++ VLD+GC G+L I + +++GI E E + + +++ D
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGI-------EAFPEAAEQAKEKLDHVVLGD 81
Query: 188 ISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
I T +M E +D + ++ EH+ + +++K+ ++K++ ++
Sbjct: 82 IETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
E ++ LD+GCG G SLY+A + + +E + L N+
Sbjct: 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLH 83
Query: 183 IIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237
V D++ + YD I S + + K L+ + + K +
Sbjct: 84 TRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-13
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ LE D+GCG G+ + + +Y ITGI + + +E+ L N
Sbjct: 27 AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD---DDMLEKAAD--RLPNTN 81
Query: 183 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV---HHFCHKTF 239
AD++T++ D +Y+ +F+ + ++ +L ++ ++ +L V + T
Sbjct: 82 FGKADLATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTH 141
Query: 240 AYHFEDTNDDDW 251
E + W
Sbjct: 142 IAMHETADGGPW 153
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-13
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 8/152 (5%)
Query: 113 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 172
+ + + TVLD G G L I + K GI S Q + E
Sbjct: 7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENF 65
Query: 173 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTL 228
R + I DI F+ + S +YS HM+ + + + +I + +K L
Sbjct: 66 SRENNF-KLNISKGDIRKLPFK-DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123
Query: 229 LFVHHFCHKTFAY-HFEDTNDDDWITKYFFTG 259
++ K Y E + +++
Sbjct: 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEK 155
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 1e-12
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 17/213 (7%)
Query: 93 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 152
+Y++ Y S+ + + L ++ VLD+ CG G S +
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLL--MKYMKKRGKVLDLACGVGGFSFLLEDY-- 59
Query: 153 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM-- 209
++ G+ S+ E + E NVE IV D E ++D + I+ H
Sbjct: 60 GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP 118
Query: 210 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDT---NDDDWITKYFFTGGTMPSAN 266
+ K++ + +K ++ + +++ WI+K P
Sbjct: 119 LELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI------PDQE 172
Query: 267 LLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRM 299
+ S D + V + +T E L ++
Sbjct: 173 ERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKL 205
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 2e-12
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 5/142 (3%)
Query: 98 YSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKI 156
++ L E+ + L G V V CGW S L + ++
Sbjct: 87 LERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQL 146
Query: 157 TGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHM---KNY 212
GI + L + + D + YD + S + +
Sbjct: 147 VGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARV 206
Query: 213 QNLLKKISKWMKEDTLLFVHHF 234
L ++ + +K L
Sbjct: 207 TELYRRFWQALKPGGALVTSFL 228
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-12
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 14/164 (8%)
Query: 104 SDASKTLEDAEKAMLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
+ K + + ++ + R+ +L++G G + + + IT +
Sbjct: 15 TAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEA 72
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKI-S 220
S+ + + + + I + ++ YD I + EH+ + LLK+I
Sbjct: 73 SEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRIND 128
Query: 221 KWMKEDTLLFV-----HHFCHKTFAYHFEDTNDDDWITKYFFTG 259
W+ E LF+ + + +++ F G
Sbjct: 129 DWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 111 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 170
E KA+ + L + + D+GCG G ++ +A ++TG+ +
Sbjct: 32 EVTLKALSFI----DNLTEKSLIADIGCGTGGQTMVLAGHV-TGQVTGLDFLSGFIDIFN 86
Query: 171 EQCRVLELQN-VEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 227
R LQN V IV + F D I+S ++ ++ L + K++K+
Sbjct: 87 RNARQSGLQNRVTGIVGSMDDLPFR-NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGG 144
Query: 228 LLFVHHFCHKTFAYHFEDTNDDDWITKY 255
L V T E +D W+ Y
Sbjct: 145 YLAVSECSWFTDERPAE--INDFWMDAY 170
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 15/170 (8%)
Query: 102 YFSDASKTLEDAE--KAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKIT 157
+F S+ E KA E + + L D TVLD+GCG+G +Y A+ + K+
Sbjct: 13 FFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK-KVL 71
Query: 158 GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLL 216
GI S+ + E R V I +E +Y+ + S ++ ++ ++
Sbjct: 72 GIDLSERM---LTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDIC 128
Query: 217 KKISKWMKEDTLLF--VHHFCHKTFA----YHFEDTNDDDWITKYFFTGG 260
KK+ +K V H Y E N W +F
Sbjct: 129 KKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNES 178
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-11
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNV 181
++ ++D GCG+G L L + K TGI + +T E R+L +
Sbjct: 16 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DS 74
Query: 182 EIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 241
E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 75 EFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMA 134
Query: 242 HFE 244
+
Sbjct: 135 SYL 137
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 6e-10
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE-QCRVLELQNVEIIVA 186
LD G G G ++ + K + K +EE + + + + I+A
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPV---KHMLEEAKRELAGMPVGKFILA 147
Query: 187 DISTFEMEA-SYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKTFAYHF 243
+ T + +YD I ++ + K + + + +F C +
Sbjct: 148 SMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207
Query: 244 EDTN 247
+ +
Sbjct: 208 DKED 211
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-10
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 111 EDAEKAMLELY-------CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 163
E A + + L + + V+D+GCG G+L + + +ITG+ S
Sbjct: 4 EAAVEKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY 63
Query: 164 TQKEFIEEQCRVLELQ-----NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NL 215
E +E+ L L +++I ++ + YD IE+ EH+ +
Sbjct: 64 RSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAF 123
Query: 216 LKKISKWMKEDTLLF 230
+ + ++ + ++
Sbjct: 124 ERVLFEFAQPKIVIV 138
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 45/241 (18%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ + G +LD+GCG G L+ IAQ S ++ G N+ I E+ R ++
Sbjct: 51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNA---ATMI-EKARQ-NYPHLH 103
Query: 183 IIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 242
VAD F ++ D ++S M +K + + I + +K Y
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163
Query: 243 FEDTNDDDWITKYFFTGGTMPS--------ANLL----------------LYFQDDVSVV 278
E + P N+L + +
Sbjct: 164 LEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEFGM 223
Query: 279 DHWLVNGKHYAQTSEEWLKRMDNN-----LASIKPIMESTYGKDQAVKWTV-YWRTFFIA 332
+W+ + +L + + + ++ ++ + WT Y R ++
Sbjct: 224 ANWI------QMFASAFLVGLTPDQQVQLIRKVEATLQDKLYHQE--SWTADYRRIRIVS 275
Query: 333 V 333
+
Sbjct: 276 I 276
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-09
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171
+ +LE +S VL+ G G G+L+ + + GI S +E
Sbjct: 32 AHYEDILEDVVNKS----FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPS---REMR-M 81
Query: 172 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLL 229
+ + I D +FE+ S D I S F H+ + + + K S+ + + +
Sbjct: 82 IAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKI 141
Query: 230 FVHHFCHKTFAYHFEDTND----------DDWITKYFFTGGTM 262
+ + +D T+Y+ M
Sbjct: 142 VFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 103 FSDASKTLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 160
+ + L+ A E R+ L + G ++D+GCG+G + + ++ + G+
Sbjct: 19 LGRSIEGLDGA----AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGAS-YVLGLD 73
Query: 161 NSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNLLKKI 219
S+ + + AD+ + + S+D YS ++++ L + +
Sbjct: 74 LSEKM---LARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTV 130
Query: 220 SKWMKED-TLLFVHHFCHKTF----AYHFEDTNDDDWITKYFFTGGTM 262
+ + +F + + W + G
Sbjct: 131 HQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPR 178
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-09
Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
Y + ++ A A LE VL++ G G + +++ ++T +
Sbjct: 22 YDATFVPYMDSAAPAALE---RLRAGNIRGDVLELASGTGYWTRHLSGLA--DRVTALDG 76
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 219
S E I + L NVE D+ + + +D ++ H+ + ++ + +
Sbjct: 77 S---AEMI-AEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESV 132
Query: 220 SKWMKED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGT 261
+ + FV H+ +D+ + + + G +
Sbjct: 133 RSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRS 175
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 13/143 (9%)
Query: 111 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 170
+++L ++D CG G+ + +++Q + ++ G+ S K +E
Sbjct: 38 NVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVS---KSALE 92
Query: 171 EQCRVLELQNVEIIVADISTFEMEASYD------RIYSIEMFEHM--KNYQNLLKKISKW 222
+ N+ + D E A IY F H+ + + L + +
Sbjct: 93 IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRIL 152
Query: 223 MKEDTLLFVHHFCHKTFAYHFED 245
+ + +++ +
Sbjct: 153 LGKQGAMYLIELGTGCIDFFNSL 175
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
F + + + KA L Y + VLD+GCG G ++ + G+
Sbjct: 16 LFEEKFRGSRELVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDI 71
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKI 219
++ +F E + V++ +E + + + D + EH+ LL
Sbjct: 72 NEDMIKFCEGKFNVVKSDAIE----YLKSLP-DKYLDGVMISHFVEHLDPERLFELLSLC 126
Query: 220 SKWMKEDTLLFV 231
MK + + +
Sbjct: 127 YSKMKYSSYIVI 138
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 18/152 (11%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
++E G + D+GCG G+ +L +A Y ++TG+ S+ E +E+ +V+
Sbjct: 28 LEQVEPGKRIADIGCGTGTATLLLADHY---EVTGVDLSEEMLEIAQEKAMETNR-HVDF 83
Query: 184 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKEDTLL---------F 230
V D+ E+ D I S+ + + + ++ + + L
Sbjct: 84 WVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143
Query: 231 VHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 262
F KT+A H E ++ W ++
Sbjct: 144 ETLFNGKTYATHAEQSS-YIWFADPGEEPLSV 174
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 2e-08
Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171
+L+ R G + +G G L+ + ++ + E +
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164
Query: 172 QCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
L + V +I D + + +D + + + + + + I +++ +T +
Sbjct: 165 VIEGLGVDGVNVITGDETVID-GLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 168
+LE E+ + ++ ++D GCG G Y+ + + K+ I + +
Sbjct: 2 SLERPEEYLPNIF-----EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKE 54
Query: 169 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 228
++E+ + I ++D + S D I F M + Q+++ ++ + +K+D
Sbjct: 55 VKEKF------DSVITLSDPKEIP-DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGR 107
Query: 229 LFVHHFCHK 237
+ + + +
Sbjct: 108 VIIIDWRKE 116
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 3e-08
Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 26/179 (14%)
Query: 99 SCCYFSDASKTLEDAEKAMLELYCER----------SRLEDGHTVLDVGCGWGSLSLYIA 148
+C + ++ + + E+ +G TVLD+GCG G +
Sbjct: 43 ACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLAS 102
Query: 149 QKY-SNCKITGICNS--------KTQKEFIEEQCRVLELQNVEIIVADISTFEM------ 193
+ + K+ G+ K + E+ NV + I
Sbjct: 103 KLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162
Query: 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDW 251
++S D + S + N L K+I + +++ L+ + +
Sbjct: 163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY 221
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 94 KYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153
K + S +++ S+ + D+ + ++ VLDVGCG G + +++
Sbjct: 18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-- 75
Query: 154 CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 211
K G+ S + I++ E ++ I D+S+ FE ++ I +I E +
Sbjct: 76 YKAVGVDIS---EVMIQKGKERGEGPDLSFIKGDLSSLPFE-NEQFEAIMAINSLEWTEE 131
Query: 212 YQNLLK 217
L
Sbjct: 132 PLRALN 137
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-08
Identities = 16/150 (10%), Positives = 46/150 (30%), Gaps = 5/150 (3%)
Query: 110 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 169
+ + K + E LD G G G ++ + ++ + ++
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQA 118
Query: 170 EEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKED 226
+ + + F E SYD I+ + H+ + L++ ++ +
Sbjct: 119 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 178
Query: 227 TLLFVHHFCH-KTFAYHFEDTNDDDWITKY 255
++ + + D++ +
Sbjct: 179 GIIVIKDNMAQEGVILDDVDSSVCRDLDVV 208
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188
L++GC G+ + +A C ++T I ++ + ++ DI
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTK--RWSHISWAATDI 106
Query: 189 STFEMEASYDRIYSIEMFEHMKNYQNL---LKKISKWMKEDTLLFVHHFCHKTFAYHF 243
F +D I E+ ++++ + + + K + L T
Sbjct: 107 LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWG 164
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-07
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
+ RL+D + D+G G S+S+ + N +I + + FI + + +NV +
Sbjct: 35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTL 94
Query: 184 IVADI-STFEMEASYDRIY 201
+ A + DR++
Sbjct: 95 VEAFAPEGLDDLPDPDRVF 113
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT-----QKEFIEEQCRVLELQN 180
+ + V+D+GCG G+L + + S +ITG+ S + + ++ ++ +
Sbjct: 26 KSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR 85
Query: 181 VEIIVADISTFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 230
+ + + + + + YD IE+ EH+ Q K + ++ + T++
Sbjct: 86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-07
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 176
+ + S L G L GCG G + +A + G+ S++ + E
Sbjct: 56 IVHLVDTSSLPLG-RALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP 112
Query: 177 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234
+ + + D+ T+ +D I+ F + + K + + +K D L +
Sbjct: 113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII 184
L G +L++GCG G + + + S E E +
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGS---PELAAE-AS--RRLGRPVR 90
Query: 185 VADISTFEMEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 242
+ +YD +++ H+ ++LK I + +K L + ++
Sbjct: 91 TMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYA------SYKSG 144
Query: 243 FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 296
+ D ++ + + V GK + Q ++L
Sbjct: 145 EGEGRDKLA---RYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFL 195
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189
+L + G G + ++A ++T + S ++ + + + + ++++
Sbjct: 30 QGKILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLA 86
Query: 190 TFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
F++ +++ I SI Q L K+ + +K + + F + Y+ D
Sbjct: 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKD 146
Query: 249 DDW 251
D
Sbjct: 147 LDL 149
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-V 181
R + G T +D+G G G+LS+ +A++ + I + SK E + L + +
Sbjct: 38 NRFGITAG-TCIDIGSGPGALSIALAKQS-DFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 182 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKI 219
+I+ D+ E + D I S ++ ++I
Sbjct: 96 QIVQGDVHNIPIE-DNYADLIVSRGSVFFWEDVATAFREI 134
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-07
Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 21/170 (12%)
Query: 111 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 170
+ ++A+L R VLD+GCG G L +A + + G+ +T +
Sbjct: 38 QVTDQAILLAILGRQ----PERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAAR 91
Query: 171 EQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLL 229
+ + YD I + H + LL + + L+
Sbjct: 92 AAGAGEVHL-ASYAQLAEAKVPVGKDYDLICANFALLHQ-DIIELLSAMRTLLVPGGALV 149
Query: 230 F-VHHFCHKTFAYHFEDTNDDDW---------ITKYFFTGGTMPSANLLL 269
H + + ++ + + YF T + N L
Sbjct: 150 IQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW--LNALD 197
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV 181
+ L++G TVLDVG G G Y+++ K+ I + + E+ L L+NV
Sbjct: 31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNV 90
Query: 182 EIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224
E++ ++ + + + D I+ F + L+++ + K
Sbjct: 91 EVLKSEENKIPLP-DNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 8e-07
Identities = 19/148 (12%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
RSR + ++LDV CG G+ + ++ G+ S ++ + R L + +
Sbjct: 35 RSRTPEASSLLDVACGTGTHLEHFTKE--FGDTAGLELS---EDML-THARK-RLPDATL 87
Query: 184 IVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKE------DTLLFVHH 233
D+ F + + + S+ + + + ++ ++ + F
Sbjct: 88 HQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147
Query: 234 FCHKTFAYHFEDTNDDD--WITKYFFTG 259
F + + ++ G
Sbjct: 148 FADGWVSADVVRRDGRTVARVSHSVREG 175
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 9e-07
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 133 VLDVGCGWGSLSLYI----AQKYSNCKITGIC---NSKTQKEFIEEQCRVLELQNVEIIV 185
+L +G G G + L I +Y I +++ ++ E + L+NV+
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW 115
Query: 186 ADISTFEMEA---------SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236
++ E ++ +D I+ I+M ++K+ LK + + + +
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
Query: 237 KTFAYHF 243
+
Sbjct: 176 SSGWDKL 182
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 6/150 (4%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171
AE +E + + VLD+ CG G +L +A++ ++ G+ +
Sbjct: 24 KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARR 81
Query: 172 QCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTL 228
+ + L +E + D+ + +D + + ++ + L K+++ +K +
Sbjct: 82 KAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV 140
Query: 229 LFVHHFCHKTFAYHFEDTNDDDWITKYFFT 258
C ++ +
Sbjct: 141 FITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 3e-06
Identities = 14/82 (17%), Positives = 28/82 (34%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189
G VLD+GC G L+L IA K+ ++ G+ + R + + + +
Sbjct: 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLE 106
Query: 190 TFEMEASYDRIYSIEMFEHMKN 211
+ ++
Sbjct: 107 GDPGAEGEEGTTTVRKRSCFPA 128
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-CN----SKTQKEFIEEQCRVLE 177
+ L++ +LD+GCG G +SL +A K +TGI N +
Sbjct: 24 IHNYLQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKT 81
Query: 178 LQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224
E V + S+ F ++S+D + + + + I + +
Sbjct: 82 GGKAEFKVENASSLSFH-DSSFDFAVMQAFLTSVPDPKERSRIIKEVFR 129
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ L V+DVGCG G +++ IA++ + I E ++ ++N +
Sbjct: 29 GKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQ 86
Query: 183 IIVAD 187
II
Sbjct: 87 IIKGR 91
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR------- 174
E +++ G +L++GCG G LS +A + S+ +TGI + +
Sbjct: 37 EAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA 96
Query: 175 -----VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLK 217
L + + D+ + +DR+ + + L
Sbjct: 97 GPLGDRLTVHFNTNLSDDLGPIA-DQHFDRVVLAHSLWYFASANALAL 143
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171
+ C + L LD+ CG G+L+ + K + S+ E
Sbjct: 21 KKWSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAEN 77
Query: 172 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 226
+ R L + DIS + +D I S + + K +S +KE
Sbjct: 78 KFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG 136
Query: 227 TLLF----VHHFCHKTFAYHFEDTNDD 249
+F + F +D+
Sbjct: 137 VFIFDINSYYKLSQVLGNNDFNYDDDE 163
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 13/144 (9%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171
E A L R ++LDV CG G ++A + G+ S + +
Sbjct: 34 HREAADLAALVRR-HSPKAASLLDVACGTGMHLRHLADS--FGTVEGLELS---ADML-A 86
Query: 172 QCRVLELQNVEIIVADISTFEMEASYDRIY----SIEMFEHMKNYQNLLKKISKWMKED- 226
R + + D+ F + + + SI L++ + + D
Sbjct: 87 IARR-RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145
Query: 227 TLLFVHHFCHKTFAYHFEDTNDDD 250
++ + + F + +
Sbjct: 146 VVVVEPWWFPENFTPGYVAAGTVE 169
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSK------TQKEFIEEQCRVLEL 178
R T++D GCG GSL + ++ I G+ S + ++ +
Sbjct: 718 RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV 777
Query: 179 QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLF 230
++ + I F+ D +E+ EHM+ Q +K+ L+
Sbjct: 778 KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 6e-06
Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 26/169 (15%)
Query: 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIE 170
+ +A+LE L +L +GCG +LS + + N +T + S ++
Sbjct: 30 SSFRALLEPE-----LRPEDRILVLGCGNSALSYELFLGGFPN--VTSVDYSSVVVAAMQ 82
Query: 171 EQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM---------------KNYQN 214
+ + D+ + AS+D + + +
Sbjct: 83 ACYA--HVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQ 140
Query: 215 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMP 263
+L ++S+ + F W ++ G
Sbjct: 141 VLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFH 189
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
+ T+ D+G G GS+++ + S+ ++E I L + +
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIA 79
Query: 184 IVADI 188
+
Sbjct: 80 VQQGA 84
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 38/189 (20%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN----- 180
+ + D+G G G+ + +A + ++T + +E E R LEL +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLY---ERSQEMAEFARRSLELPDNAAFS 89
Query: 181 --VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238
+E++ AD++ + E F H+ N + K
Sbjct: 90 ARIEVLEADVTLRAKARVEAGLPD-EHFHHV--IMN-----PPYNDAGDRRTPDA--LKA 139
Query: 239 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
A+ + +DWI A+ ++ +S++ Q+ E +
Sbjct: 140 EAHAMTEGLFEDWIRT----------ASAIMVSGGQLSLI--------SRPQSVAEIIAA 181
Query: 299 MDNNLASIK 307
+ ++
Sbjct: 182 CGSRFGGLE 190
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-05
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-LQ 179
R L G +L+VG G G++S YI +T + + + + +
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
Query: 180 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239
NV +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 163 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 19/200 (9%)
Query: 11 ATVRLMLSSLERNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFA------HSL 64
A V+ L + R L RL L G G++ + LL +
Sbjct: 116 AYVQASLVAAARALRMGG------RLYLAGDKNKGFE-RYFKEARALLGYGVVVRREGPY 168
Query: 65 REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER 124
R + + + S L F + FS + ++ A +LE ER
Sbjct: 169 RVALLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFS--AGKVDPASLLLLEALQER 226
Query: 125 SRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
E G VLD+G G+G+L+L +A+ ++ G+ + +++ L+
Sbjct: 227 LGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQA 284
Query: 183 IIVADISTFEMEASYDRIYS 202
+ EA +D I +
Sbjct: 285 LHSDVDEALTEEARFDIIVT 304
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 16/123 (13%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
L +++G G G ++ + G+ E E + + V
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLK------IKIGV-------EPSERMAEIARKRGVF 87
Query: 183 IIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 240
++ + + S+D + + + + LK+ + +K+ L V ++F
Sbjct: 88 VLKGTAENLPLK-DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL 146
Query: 241 YHF 243
Sbjct: 147 GRE 149
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-05
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 116 AMLELYCE-RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174
+ + Y ++ ++LD GCG+ L+LY + + + F+
Sbjct: 35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG 94
Query: 175 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN 211
L+ ++ + + + +YD ++ ++M +K
Sbjct: 95 KLKTT-IKYRFLNKESDVYKGTYDVVFLLKMLPVLKQ 130
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEII 184
+DVGCG G ++L +A ++ I + E + L NV ++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87
Query: 185 VADI-STFEMEASYDRI 200
D D
Sbjct: 88 EGDAPEALCKIPDIDIA 104
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 11/134 (8%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
Y E + G +LD GCG G + Y++++ + G
Sbjct: 19 YAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDL 76
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQNL---LK 217
I + + + +V D+S ++ E +D I S L
Sbjct: 77 D---PILI-DYAKQ-DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA 131
Query: 218 KISKWMKEDTLLFV 231
I + + D +
Sbjct: 132 NIHRALGADGRAVI 145
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 17/135 (12%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161
Y ++ L + + L VL+ GCG G + + +
Sbjct: 21 YRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDF 78
Query: 162 SKTQKEFIEEQCRVLELQNVEIIVADIST---FEMEASYDRIYSIEMFEHMKNYQNLLKK 218
S + + ++ + + A + I S + +++ +
Sbjct: 79 SPELLKLARANAP-----HADVYEWNGKGELPAGLGAPFGLIVS------RRGPTSVILR 127
Query: 219 ISKWMKED-TLLFVH 232
+ + D L+V
Sbjct: 128 LPELAAPDAHFLYVG 142
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 14/124 (11%)
Query: 111 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE 170
ED ++ ++E + +LDVG G G + ++A +I G+ + +
Sbjct: 27 EDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASL--GHQIEGLEPA---TRLV- 76
Query: 171 EQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDT 227
E R +V I+ + + + HM + + L + +++
Sbjct: 77 ELARQT-HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGG 135
Query: 228 LLFV 231
L +
Sbjct: 136 GLLM 139
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNV-------E 182
VLDVGCG G LS+ A+ ++T + +E + E
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLT----------LCDVSAPAVEASRATLAANGVEGE 248
Query: 183 IIVADISTFEMEASYDRIYS 202
+ +++ + E++ +D I S
Sbjct: 249 VFASNVFS-EVKGRFDMIIS 267
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------- 178
++D+GCG G + L + K K+ F++E +
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVV----------FVDESPMAVASSRLNVETNMPEAL 274
Query: 179 QNVEIIVADISTFEMEASYDRIYS 202
E ++ + + ++ +
Sbjct: 275 DRCEFMINNALSGVEPFRFNAVLC 298
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 49/270 (18%)
Query: 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGI-- 159
Y D + + +L L R H VLDV CG G S+ + ++ +T +
Sbjct: 34 YIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDA 87
Query: 160 -------CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHMKN 211
+ E ++ + D +D + + F H+ +
Sbjct: 88 SDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD-KDVPAGDGFDAVICLGNSFAHLPD 146
Query: 212 YQN-------LLKKISKWMKEDTLLFVHHF----------CHKTFAYHFEDTNDDDWITK 254
+ LK I+ ++ LL + H +++ D T
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTS 206
Query: 255 YFFTGGTMPSANLLLYFQDDVSVVD----HWLVNGKHYAQTSEE---WLKRMDNNLASIK 307
L Q + D +Y ++
Sbjct: 207 VLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQH- 265
Query: 308 PIMESTYG--KDQAVKWTVYWRTFFIAVAE 335
S G K Y +FI V +
Sbjct: 266 ----SVLGDFKPYRPG-QAYVPCYFIHVLK 290
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 113 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 172
L L + + H VLD+G G G +L + + G+ +K E
Sbjct: 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSF 62
Query: 173 CRVLELQNVEIIVADIST--FEMEASYDRIYSIEMFEHMKNYQNLLK 217
+ ++NV + F + S+D I H + + ++
Sbjct: 63 AQEKGVENVRFQQGTAESLPFP-DDSFDIITCRYAAHHFSDVRKAVR 108
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 2e-04
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 37/214 (17%)
Query: 106 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ 165
D K L + +D+G G G +A N GI K
Sbjct: 5 KGTKTVDLSKDELT----EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 166 KEFI----EEQCRVLELQNVEIIVADIS--TFEMEASYDRIY-----SIEMFEHMKNYQN 214
I ++ L NV ++A FE++ D I + +K ++
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRD 120
Query: 215 LLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDD 274
+L ++ K++ T D + +P + + +
Sbjct: 121 ILSNVADLAKKEAHFEF-------------VTTYSDSYEEAEIKKRGLPLLSKAYFLSEQ 167
Query: 275 VS---------VVDHWLVNGKHYAQTSEEWLKRM 299
+ D ++ ++ Q + W KR+
Sbjct: 168 YKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRL 201
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE---EQCRVLELQ 179
L G + D+G G G S+ +A + + + E +Q
Sbjct: 28 NLLNLPKGSVIADIGAGTGGYSVALANQ--GLFVYAV-------EPSIVMRQQAV--VHP 76
Query: 180 NVEIIVADIST--FEMEASYDRIYSIEMFEHMKN 211
VE + S D + SI H +
Sbjct: 77 QVEWFTGYAENLALP-DKSVDGVISILAIHHFSH 109
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 6e-04
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 168
T +A +L L +E G V D+G G G LS A ++ + K +
Sbjct: 30 TPGNAASELLWLAYSLGDIE-GKVVADLGAGTGVLSY-GALLLGAKEVICVEVDKEAVDV 87
Query: 169 IEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTL 228
+ E + + ++ + D+S F + D + + + + K + +
Sbjct: 88 LIENLGEFKGK-FKVFIGDVSEF--NSRVDIVI-MNPPFGSQRKHADRPFLLKAFEISDV 143
Query: 229 LFVHHFCHKTFAYHFE 244
++ H E
Sbjct: 144 VYSIHLAKPEVRRFIE 159
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 7e-04
Identities = 23/172 (13%), Positives = 52/172 (30%), Gaps = 12/172 (6%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
R + G +VLD+GCG G L + + G+ ++ + R ++ +
Sbjct: 59 RLYTKRGDSVLDLGCGKGGDLLKYE-RAGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117
Query: 184 -IVADISTFEME--ASYDRIYSIE----MFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236
D M+ +D I S F ++ + I++ ++ +
Sbjct: 118 FRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177
Query: 237 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLL----YFQDDVSVVDHWLVN 284
++ + K + D V+ + V+
Sbjct: 178 DVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVD 229
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADIS 189
+LD+GCG+G + + +A + T ++ + +E ++ L N + ++ +D+
Sbjct: 55 DILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY 112
Query: 190 TFEMEASYDRIYS 202
+ Y++I +
Sbjct: 113 ENVKDRKYNKIIT 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 100.0 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 100.0 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.95 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.87 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.86 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.84 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.83 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.81 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.8 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.8 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.79 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.79 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.78 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.78 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.76 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.76 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.76 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.75 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.75 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.75 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.75 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.74 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.73 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.73 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.73 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.73 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.72 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.72 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.71 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.71 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.71 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.71 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.7 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.7 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.7 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.7 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.69 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.69 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.69 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.69 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.69 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.68 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.68 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.67 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.67 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.67 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.67 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.67 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.67 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.67 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.67 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.66 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.66 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.66 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.66 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.66 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.65 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.65 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.65 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.65 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.64 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.64 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.64 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.64 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.64 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.64 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.64 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.64 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.63 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.63 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.63 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.63 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.63 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.62 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.62 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.62 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.62 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.62 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.62 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.62 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.61 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.61 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.61 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.6 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.6 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.6 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.6 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.6 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.6 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.6 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.6 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.6 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.6 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.59 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.59 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.59 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.59 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.59 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.59 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.59 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.58 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.58 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.58 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.58 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.57 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.57 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.57 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.57 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.57 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.57 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.56 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.56 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.55 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.55 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.54 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.54 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.54 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.53 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.53 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.53 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.53 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.52 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.52 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.52 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.52 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.52 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.52 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.51 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.51 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.51 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.51 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.51 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.5 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.5 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.49 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.49 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.49 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.49 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.48 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.47 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.47 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.47 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.47 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.47 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.46 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.46 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.46 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.45 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.45 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.44 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.44 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.44 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.44 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.43 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.43 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.43 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.43 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.43 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.43 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.42 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.42 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.42 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.42 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.42 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.42 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.41 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.4 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.4 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.4 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.38 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.37 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.37 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.37 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.35 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.35 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.34 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.33 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.33 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.32 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.31 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.31 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.3 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.29 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.29 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.26 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.23 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.2 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.19 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.19 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.17 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.16 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.12 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.07 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.07 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.05 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.05 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.04 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.99 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.97 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.95 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.94 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.9 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.9 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.85 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.82 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.82 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.73 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.66 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.65 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.64 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.6 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.5 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.5 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.46 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.36 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.29 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.29 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.22 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.22 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.2 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.12 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.06 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.83 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.76 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.74 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.28 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.07 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.89 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.86 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.8 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.64 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.57 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.55 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.53 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.52 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.51 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.49 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.48 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.39 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.23 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.21 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.16 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.15 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.14 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.12 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.1 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.87 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.87 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.83 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.83 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.82 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.8 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.74 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.74 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.71 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.66 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.62 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.6 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.59 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.58 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.52 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.5 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.49 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.47 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.45 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.43 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.35 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.29 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.17 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.13 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.09 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.04 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.94 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.92 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.92 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.88 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.81 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.74 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.71 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.63 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.59 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.54 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.45 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.42 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.37 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.36 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.29 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.28 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.25 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.14 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.11 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.04 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.93 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.78 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.73 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.68 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.6 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.49 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 93.47 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.44 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.27 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.23 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.21 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 93.2 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.12 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 93.12 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 93.1 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 92.97 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.94 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.86 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.72 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 92.71 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.69 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.69 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.55 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 92.33 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.31 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.24 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 92.21 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 92.15 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.13 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 92.06 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.05 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 91.9 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.79 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.52 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.32 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 91.31 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 91.3 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 91.29 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.26 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.21 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 91.21 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 91.06 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.96 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.94 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 90.87 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 90.85 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 90.79 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.68 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.62 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.57 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.53 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 90.46 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 90.35 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.33 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 90.27 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.19 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 90.16 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.14 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 90.12 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.1 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 90.09 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 90.03 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 89.83 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 89.8 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 89.77 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 89.73 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 89.55 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 89.4 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 89.32 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 89.31 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 89.28 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 89.27 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 89.21 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 89.19 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 89.12 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.11 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.08 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.05 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.88 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.82 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 88.74 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 88.73 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.47 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.43 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 88.28 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 88.16 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 88.14 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 88.12 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 88.02 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 87.95 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.91 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.88 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 87.88 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.73 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.71 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 87.59 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 87.54 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 87.49 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 87.2 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 87.03 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.01 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 86.88 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 86.83 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 86.75 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 86.64 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 86.4 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.34 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 86.25 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 85.97 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 85.72 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 85.71 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 85.68 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 85.67 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 85.4 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 85.32 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.27 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.22 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 84.9 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 84.89 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.79 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 84.67 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 84.52 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 84.46 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 84.35 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 84.24 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 84.2 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.18 |
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=278.72 Aligned_cols=265 Identities=25% Similarity=0.420 Sum_probs=228.6
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.+..|||..+++|+.++++.+.|++++|..+..++.+++...+..+++.+.+.++.+|||||||+|.++..+++.++ +
T Consensus 18 ~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~ 96 (302)
T 3hem_A 18 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-V 96 (302)
T ss_dssp HHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-C
T ss_pred HHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-C
Confidence 345789999999999999999999999999989999999999999999999889999999999999999999999874 8
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccchhh---------HHHHHHHHHHhcc
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMKN---------YQNLLKKISKWMK 224 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~---------~~~~l~~~~~~Lk 224 (357)
+|+|+|+|+.+++.|++++...+++ +++++.+|+.++ .++||+|+++.+++|+++ ...+++++.++||
T Consensus 97 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk 174 (302)
T 3hem_A 97 NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP 174 (302)
T ss_dssp EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC
Confidence 9999999999999999999998885 899999999876 578999999999999944 4899999999999
Q ss_pred cCceEEEEeccCCCCCcccccC--------CccchhhhcccCCCCCCCHHHHHhhc--CCcEEEEeEEecCccHHHHHHH
Q 018346 225 EDTLLFVHHFCHKTFAYHFEDT--------NDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEE 294 (357)
Q Consensus 225 pgG~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~w~~~g~~y~~tl~~ 294 (357)
|||++++.+++........... ....|+.++++|++.+|+...+.... .++.+++. ...+.+|.+|+..
T Consensus 175 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~-~~~~~~y~~tl~~ 253 (302)
T 3hem_A 175 DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY-HRIGANYVPTLNA 253 (302)
T ss_dssp TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE-EECGGGHHHHHHH
T ss_pred CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEE-EeCchhHHHHHHH
Confidence 9999999988766432111000 01278999999999999887766654 35665554 5668999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 295 WLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 295 w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
|.+++.++..++.++ |++ .+++.|+.|+.+|+.+|+.|. .++.|++++|
T Consensus 254 w~~~~~~~~~~~~~~----~~~----~~~~~w~~yl~~~~~~f~~~~---~~~~q~~~~~ 302 (302)
T 3hem_A 254 WADALQAHKDEAIAL----KGQ----ETCDIYMHYLRGCSDLFRDKY---TDVCQFTLVK 302 (302)
T ss_dssp HHHHHHHTHHHHHHH----HCH----HHHHHHHHHHHHHHHHHHTTS---SEEEEEEEEC
T ss_pred HHHHHHHhHHHHHHH----hCH----HHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 999999998888775 554 688999999999999999999 6688999886
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=255.80 Aligned_cols=264 Identities=26% Similarity=0.456 Sum_probs=224.5
Q ss_pred hhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 76 ~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
.+..|||..+++|+.++++.+.|++++|..+...+.+++...++.+++.+++.++.+|||||||+|..+..+++.. +.+
T Consensus 11 ~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~ 89 (287)
T 1kpg_A 11 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVN 89 (287)
T ss_dssp HHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCE
T ss_pred HHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCE
Confidence 4578999999999999999999999999988899999999999999999888899999999999999999999665 569
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEE
Q 018346 156 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+|+|+.+++.+++++...++. +++++.+|+.+++ ++||+|++..+++|+ +++..+++++.++|||||.+++.
T Consensus 90 v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 167 (287)
T 1kpg_A 90 VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 167 (287)
T ss_dssp EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999999887764 8999999998765 789999999999999 78999999999999999999999
Q ss_pred eccCCCCCcc--------cccCCccchhhhcccCCCCCCCHHHHHhhc--CCcEEEEeEEecCccHHHHHHHHHHHHHhc
Q 018346 233 HFCHKTFAYH--------FEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 302 (357)
Q Consensus 233 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~ 302 (357)
+++....... ........|+.++++|++.+++...+.... .++.+++ +...+.+|.+|+..|..++.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~-~~~~~~~y~~~~~~w~~~~~~~ 246 (287)
T 1kpg_A 168 TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTR-VQSLQPHYAKTLDLWSAALQAN 246 (287)
T ss_dssp EEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEE-EEECHHHHHHHHHHHHHHHHHT
T ss_pred EecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEE-EEeCcHhHHHHHHHHHHHHHHH
Confidence 8876542210 000123457788899999998887776643 4666555 4566789999999999999988
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 303 LASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
..++.+. +++ .+++.|+.|+.+|+++|+.|. +++.|++++|
T Consensus 247 ~~~~~~~----~~~----~~~~~~~~~l~~~~~~f~~g~---~~~~~~~~~k 287 (287)
T 1kpg_A 247 KGQAIAL----QSE----EVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 287 (287)
T ss_dssp HHHHHHH----SCH----HHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHh----cCh----HHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEC
Confidence 8777664 443 577889999999999999999 8899999987
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=247.67 Aligned_cols=265 Identities=23% Similarity=0.397 Sum_probs=224.3
Q ss_pred hhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEE
Q 018346 77 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 156 (357)
Q Consensus 77 ~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v 156 (357)
+..+||..+++|+.++++.+.|++++|..+...+.+++...+..+++.+++.++.+|||||||+|.++..+++.+ +++|
T Consensus 38 i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v 116 (318)
T 2fk8_A 38 IQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNV 116 (318)
T ss_dssp CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEE
T ss_pred HHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEE
Confidence 468999999999999999999999999988889999999999999999988899999999999999999999886 6799
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEe
Q 018346 157 TGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+|+.+++.|+++....++. +++++.+|+.+++ ++||+|++..+++|+ +++..+++++.++|||||.+++.+
T Consensus 117 ~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 117 IGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp EEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999888774 7999999998765 789999999999999 789999999999999999999998
Q ss_pred ccCCCCCcccc--------cCCccchhhhcccCCCCCCCHHHHHhhc--CCcEEEEeEEecCccHHHHHHHHHHHHHhcH
Q 018346 234 FCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNL 303 (357)
Q Consensus 234 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~ 303 (357)
++......... ......|+.++++|++.+++...+.... .++.+++ +...+.+|.+++..|..++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~-~~~~~~~y~~~~~~w~~~~~~~~ 273 (318)
T 2fk8_A 195 SVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPE-PLSLRPHYIKTLRIWGDTLQSNK 273 (318)
T ss_dssp EECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCC-CEECHHHHHHHHHHHHHHHHHTH
T ss_pred eccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEE-EEecchhHHHHHHHHHHHHHHHH
Confidence 87654321000 0012367888889999888877766643 3666554 45567899999999999999887
Q ss_pred HHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 018346 304 ASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 356 (357)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 356 (357)
.++... +++ .+++.|+.|+..|+++|+.|. .++.||+++|+.
T Consensus 274 ~~~~~~----~~~----~~~~~~~~~l~~~~~~f~~g~---~~~~~~~~~k~~ 315 (318)
T 2fk8_A 274 DKAIEV----TSE----EVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLKPG 315 (318)
T ss_dssp HHHHHH----SCH----HHHHHHHHHHHHHHHHHHTTS---CEEEEEEEECTT
T ss_pred HHHHHh----cCh----HHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEeCC
Confidence 776654 343 588999999999999999999 569999999973
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=209.04 Aligned_cols=258 Identities=17% Similarity=0.227 Sum_probs=187.2
Q ss_pred hhhhhcCCChHHHHHhhcCCCCccccccCCCC--CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC
Q 018346 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDAS--KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153 (357)
Q Consensus 76 ~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~--~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~ 153 (357)
.+..|||..+++|..++++.+++ ++|.... ..+.+++..+.+.+++.+++.++.+|||||||+|..+..+++.. +
T Consensus 8 ~~~~~Yd~~~~~y~~~~~~~~~~--~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~ 84 (273)
T 3bus_A 8 EVRQMYDDFTDPFARIWGENLHF--GYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-D 84 (273)
T ss_dssp ---------------CCGGGCCC--CCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-C
T ss_pred HHHHHHcchHHHHHHHcCCCceE--EecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-C
Confidence 34789999999999999987654 8887654 58999999999999999998899999999999999999999876 7
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.+|+|+|+|+.+++.+++++...++. +++++.+|+.+++++ ++||+|++..+++|+++...+++++.++|||||++++
T Consensus 85 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 85 VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence 89999999999999999999988874 799999999987765 7899999999999999999999999999999999999
Q ss_pred EeccCCCCCcccccCCccchhhh--cccCCCCCCCHHHHHhh-c-CCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHH
Q 018346 232 HHFCHKTFAYHFEDTNDDDWITK--YFFTGGTMPSANLLLYF-Q-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIK 307 (357)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~-~-~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~ 307 (357)
.++......... ...+... ..++....++...+... . .++.+++ +...+.+|.+++..|.+++.+....+.
T Consensus 165 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (273)
T 3bus_A 165 ADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTS-TVDISAQARPSLVKTAEAFENARSQVE 239 (273)
T ss_dssp EEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEE-EEECHHHHTTHHHHHHHHHHHTHHHHH
T ss_pred EEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEE-EEECcHhHHHHHHHHHHHHHHhHHHHH
Confidence 887654322111 0111111 12445566665555443 3 4677654 455577888899999999987755543
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 018346 308 PIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 355 (357)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 355 (357)
. .+|++..+.+...|+.+ +..+. ++.+.++++||
T Consensus 240 ~----~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~kp 273 (273)
T 3bus_A 240 P----FMGAEGLDRMIATFRGL-------AEVPE---AGYVLIGARKP 273 (273)
T ss_dssp H----HHCHHHHHHHHHHHHHH-------HTCTT---EEEEEEEEECC
T ss_pred h----hcCHHHHHHHHHHHHHH-------hhCCC---eeEEEEEEECC
Confidence 3 45665445566666532 44444 88889999986
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=189.68 Aligned_cols=258 Identities=17% Similarity=0.195 Sum_probs=190.4
Q ss_pred hhhhhcCCC--hHHHHHhhc-CCCCccccccCCC--CCCHHHHHHHHHHHHHHHc----CCCCCCEEEEECCcccHHHHH
Q 018346 76 AKEQHYELP--TSFFKLVLG-KYFKYSCCYFSDA--SKTLEDAEKAMLELYCERS----RLEDGHTVLDVGCGWGSLSLY 146 (357)
Q Consensus 76 ~~~~~y~~~--~~~~~~~l~-~~~~y~~~~f~~~--~~~l~~~~~~~l~~l~~~~----~~~~~~~vLDiGcG~G~~~~~ 146 (357)
.+..|||.. .++|+.+++ +.+++ ++|... ...+...+...+..+++.+ .+.++.+|||+|||+|..+..
T Consensus 22 ~~~~~Yd~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~ 99 (297)
T 2o57_A 22 NAEIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARF 99 (297)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHH
T ss_pred HHHHHcCCccchhHHHHHhCCCceEE--EecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHH
Confidence 346889987 489988774 55544 788776 7889999999999999988 778899999999999999999
Q ss_pred HHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcc
Q 018346 147 IAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMK 224 (357)
Q Consensus 147 la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk 224 (357)
+++.+ +++|+|+|+|+.+++.|+++....++. +++++.+|+.+++++ ++||+|++..+++|++++..+++++.++||
T Consensus 100 l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk 178 (297)
T 2o57_A 100 LVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK 178 (297)
T ss_dssp HHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE
T ss_pred HHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC
Confidence 99876 579999999999999999999888874 899999999987765 789999999999999999999999999999
Q ss_pred cCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hc-CCcEEEEeEEec---CccHHHHHHHHHHHH
Q 018346 225 EDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQ-DDVSVVDHWLVN---GKHYAQTSEEWLKRM 299 (357)
Q Consensus 225 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~~~~~~~w~~~---g~~y~~tl~~w~~~l 299 (357)
|||++++.++......... ....+......+. .++...+.. +. .|+..++..... ..+|.+++..|..+.
T Consensus 179 pgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (297)
T 2o57_A 179 PRGVMAITDPMKEDGIDKS---SIQPILDRIKLHD--MGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRS 253 (297)
T ss_dssp EEEEEEEEEEEECTTCCGG---GGHHHHHHHTCSS--CCCHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHHHHHTH
T ss_pred CCeEEEEEEeccCCCCchH---HHHHHHHHhcCCC--CCCHHHHHHHHHHCCCeEEEEEECchhhHHHHHHHHHHHHHhH
Confidence 9999999988655432111 1122333322222 334433333 22 467766554322 235666666555432
Q ss_pred HhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 018346 300 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 356 (357)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 356 (357)
.+ +.+..+ ..++..|...+..+...++.|. ++...|+++|+.
T Consensus 254 ~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~a~Kp~ 295 (297)
T 2o57_A 254 SE--------IASFCS----PEFQANMKRGLEHWIEGGRAGK---LTWGGMLFRKSD 295 (297)
T ss_dssp HH--------HTTTSC----HHHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEESS
T ss_pred HH--------HhccCC----HHHHHHHHHHHHHHHHhccCCe---EEEEEEEEECCC
Confidence 21 112233 2466777777777777777776 778899999974
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-22 Score=176.28 Aligned_cols=218 Identities=19% Similarity=0.247 Sum_probs=163.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....+++.+.+.++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|+++.... ++++++++|+.+.+.+ +
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~ 119 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPEN 119 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTT
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCC
Confidence 45567777778889999999999999999999987 789999999999999999876554 4899999999987664 7
Q ss_pred CccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCC-CCCCCHHHHHhh-
Q 018346 196 SYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTG-GTMPSANLLLYF- 271 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~- 271 (357)
+||+|+++.+++|+ +++..+++++.++|||||.+++.++....... .......+..+. ...++...+...
T Consensus 120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 120 NFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQRKYTLITVEEYADIL 193 (266)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 89999999999999 89999999999999999999999886654211 111222222222 234454444443
Q ss_pred c-CCcEEEEeEEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Q 018346 272 Q-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHF 350 (357)
Q Consensus 272 ~-~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 350 (357)
. .++..++. ...+.+|..++..|.+.+.+....+... ++++....+...|+.++.+|.. +...|++.
T Consensus 194 ~~~Gf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----g~~~w~~~-- 261 (266)
T 3ujc_A 194 TACNFKNVVS-KDLSDYWNQLLEVEHKYLHENKEEFLKL----FSEKKFISLDDGWSRKIKDSKR-----KMQRWGYF-- 261 (266)
T ss_dssp HHTTCEEEEE-EECHHHHHHHHHHHHHHHHHTHHHHHHH----SCHHHHHHHHHHHHHHHHHHHT-----TSEEEEEE--
T ss_pred HHcCCeEEEE-EeCCHHHHHHHHHHHHHHHhCHHHHHHh----cCHHHHHHHHHHHHHHHHHHHc-----CcccceEE--
Confidence 2 46776654 4456788899999999998887776654 5655555667779988888874 22335554
Q ss_pred EEeec
Q 018346 351 LFRKK 355 (357)
Q Consensus 351 ~~~~~ 355 (357)
.++||
T Consensus 262 ~~~Kp 266 (266)
T 3ujc_A 262 KATKN 266 (266)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 45665
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=175.86 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHHhhh----hhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 25 LPDAVIRRLSRLLLGGR----LRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 25 ~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
.|...++.++...+... +.....+..+++...+..++.++ ++.|.+|+.+. ..||+....+.+..+.|+
T Consensus 19 ~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~--~~f~~~~~~~~~~~~ipr---- 92 (276)
T 2b3t_A 19 SPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGV--REFWSLPLFVSPATLIPR---- 92 (276)
T ss_dssp CHHHHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCE--EEETTEEEECCTTSCCCC----
T ss_pred CcHHHHHHHHHHHhCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHcCCChhHeeee--eEECCceEEeCCCCcccC----
Confidence 45666777777766522 23344556677888888888877 89999999987 778876554444444443
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
+++ ..+++.+++.+. .++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++++...+++
T Consensus 93 -----~~t-------e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~ 159 (276)
T 2b3t_A 93 -----PDT-------ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK 159 (276)
T ss_dssp -----TTH-------HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred -----chH-------HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 221 224445555554 5678999999999999999999888899999999999999999999998887
Q ss_pred CeEEEEeccCCCccccCccEEEEcccccch-------------------------hhHHHHHHHHHHhcccCceEEEEec
Q 018346 180 NVEIIVADISTFEMEASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 180 ~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++++++|+.+....++||+|++++++... ..+..+++.+.++|+|||+++++..
T Consensus 160 ~v~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 160 NIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp SEEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ceEEEEcchhhhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 899999999874324789999999877543 3567899999999999999999753
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=174.35 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=158.5
Q ss_pred hhhcCCChHHHHHhhcCC-CCccccccCCCCCCHHHHHHHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 78 EQHYELPTSFFKLVLGKY-FKYSCCYFSDASKTLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~-~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
..+|+.+.+++..+.++. +.|+...|.. ....+......+++.+. +.++.+|||+|||+|.++..+++.+ +++
T Consensus 68 ~~~y~~~~~~~~~~~~~~~~~y~~~~f~~----~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 142 (312)
T 3vc1_A 68 HHHYGIGPVDRAALGDPEHSEYEKKVIAE----LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR 142 (312)
T ss_dssp CCSCCCSCCCHHHHCCTTSTTHHHHHHHH----HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE
T ss_pred hhhcCCchhHHHhhcCCCccccchHHHhh----hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE
Confidence 467888888888888877 8888887773 33344445566777777 7788999999999999999999886 689
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 156 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+|+|+.+++.|++++...+++ +++++.+|+.+++++ ++||+|+++.+++++ +...+++++.++|||||++++.+
T Consensus 143 v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 143 VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999998885 899999999987755 789999999999999 59999999999999999999988
Q ss_pred ccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-hc-CCcEEEEeEEecCccHHHHHHHHHHHHHhc
Q 018346 234 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQ-DDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 302 (357)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~ 302 (357)
++........ .....++.+..+++ .++...+.. +. .|+..++.... + ..++..|..++.+.
T Consensus 222 ~~~~~~~~~~--~~~~~~~~~~~~~~--~~s~~~~~~~l~~aGf~~~~~~~~-~---~~~~~~w~~~~~~~ 284 (312)
T 3vc1_A 222 GCWNPRYGQP--SKWVSQINAHFECN--IHSRREYLRAMADNRLVPHTIVDL-T---PDTLPYWELRATSS 284 (312)
T ss_dssp EEECTTTCSC--CHHHHHHHHHHTCC--CCBHHHHHHHHHTTTEEEEEEEEC-H---HHHHHHHHHHTTST
T ss_pred ccccccccch--hHHHHHHHhhhcCC--CCCHHHHHHHHHHCCCEEEEEEeC-C---HHHHHHHHHHHHHh
Confidence 7665432111 01122333333332 344444433 33 35665554322 2 46888898877754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=167.73 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=140.5
Q ss_pred HHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cC
Q 018346 120 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-AS 196 (357)
Q Consensus 120 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~ 196 (357)
.++..+. +.++.+|||||||+|..+..+++. ++++|+|+|+|+.+++.|++++...+++ +++++++|+.+++.+ ++
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 3455544 567899999999999999999987 6789999999999999999999998884 699999999987754 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHhh--cCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF--QDD 274 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~ 274 (357)
||+|+++.+++++ ++..+++++.++|||||++++.+++......... ....|... ++ .+++...+... ..|
T Consensus 115 fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~--~~--~~~~~~~~~~~l~~aG 187 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAE--INDFWMDA--YP--EIDTIPNQVAKIHKAG 187 (267)
T ss_dssp EEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH--HHHHHHHH--CT--TCEEHHHHHHHHHHTT
T ss_pred EEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH--HHHHHHHh--CC--CCCCHHHHHHHHHHCC
Confidence 9999999999999 8899999999999999999998876432211100 01122222 22 33444444332 256
Q ss_pred cEEEEeEEecC----ccHHHHHHHHHHHHHhc---HHHHHHHHHhcCCccchHHHHHHHHHHHH
Q 018346 275 VSVVDHWLVNG----KHYAQTSEEWLKRMDNN---LASIKPIMESTYGKDQAVKWTVYWRTFFI 331 (357)
Q Consensus 275 ~~~~~~w~~~g----~~y~~tl~~w~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (357)
+..++...... .+|..++..|...+.+. ..++.+++. ..+...+.|+.|..
T Consensus 188 f~~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~y~~ 245 (267)
T 3kkz_A 188 YLPVATFILPENCWTDHYFTPKVAAQKIFLTKYAGNKIAEEFSM------LQSIEEELYHKYKE 245 (267)
T ss_dssp EEEEEEEECCGGGTTTTTHHHHHHHHHHHHHHTTTCHHHHHHHH------HHHHHHHHHHHHTT
T ss_pred CEEEEEEECCHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH------HHHHHHHHHHHhcc
Confidence 77666543321 57888999998887542 223333321 11234677776653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=168.91 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=142.7
Q ss_pred HHHHHHhHhcCC-CCHHHHHHHHHHHHhhhhhc--CCC--CCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChH
Q 018346 13 VRLMLSSLERNL-LPDAVIRRLSRLLLGGRLRS--GYK--PSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTS 86 (357)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~ 86 (357)
.+.+...+.+.+ .+...++.++...+...... ... ...... ..+.+++.++ ++.|.+|+.+. ..||+....
T Consensus 20 ~~~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~r~~~~p~~yi~g~--~~f~~~~~~ 96 (284)
T 1nv8_A 20 IRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEE-KRILELVEKRASGYPLHYILGE--KEFMGLSFL 96 (284)
T ss_dssp HHHHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHH-HHHHHHHHHHHTTCCHHHHHTE--EEETTEEEE
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCH-HHHHHHHHHHHCCCCCeEEeee--eEECCeEEE
Confidence 444444443333 25566777777776632211 111 121122 6788888887 89999999997 788887766
Q ss_pred HHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHH
Q 018346 87 FFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQK 166 (357)
Q Consensus 87 ~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l 166 (357)
+...++.|+ ++++.+.+ .+++.+...++.+|||+|||+|.++..+++. |+.+|+|+|+|+.++
T Consensus 97 v~~~~lipr---------~~te~lv~-------~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al 159 (284)
T 1nv8_A 97 VEEGVFVPR---------PETEELVE-------LALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAV 159 (284)
T ss_dssp CCTTSCCCC---------TTHHHHHH-------HHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHH
T ss_pred eCCCceecC---------hhHHHHHH-------HHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHH
Confidence 555555554 33333332 2333222235679999999999999999999 899999999999999
Q ss_pred HHHHHHHHHcCCC-CeEEEEeccCCCccccCc---cEEEEcccccchhh-------------------HHHHHHHHH-Hh
Q 018346 167 EFIEEQCRVLELQ-NVEIIVADISTFEMEASY---DRIYSIEMFEHMKN-------------------YQNLLKKIS-KW 222 (357)
Q Consensus 167 ~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f---D~Ii~~~~~~~~~~-------------------~~~~l~~~~-~~ 222 (357)
+.|++|+...+++ +++|+++|+.+.. +++| |+|++|+++....+ ...+++++. +.
T Consensus 160 ~~A~~n~~~~~l~~~v~~~~~D~~~~~-~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~ 238 (284)
T 1nv8_A 160 EIARKNAERHGVSDRFFVRKGEFLEPF-KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY 238 (284)
T ss_dssp HHHHHHHHHTTCTTSEEEEESSTTGGG-GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCceEEEECcchhhc-ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhc
Confidence 9999999999886 5999999998732 3578 99999988753211 126889999 99
Q ss_pred cccCceEEEEecc
Q 018346 223 MKEDTLLFVHHFC 235 (357)
Q Consensus 223 LkpgG~l~~~~~~ 235 (357)
|+|||++++++..
T Consensus 239 l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 239 DTSGKIVLMEIGE 251 (284)
T ss_dssp CCTTCEEEEECCT
T ss_pred CCCCCEEEEEECc
Confidence 9999999997553
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-19 Score=157.93 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 195 (357)
.+..+++.+.+.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|++++...+++ +++++++|+.++++.+
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 45556777778889999999999999999999887 679999999999999999999988874 8999999999876567
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|++..+++++++...+++++.++|||||.+++..+...
T Consensus 103 ~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144 (256)
T ss_dssp CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred CCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 899999999999999999999999999999999999877543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=158.53 Aligned_cols=117 Identities=23% Similarity=0.355 Sum_probs=99.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 194 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 194 (357)
+..+++.. ++++.+|||+|||+|..+..+++.+ |+++|+|+|+|+.|++.|++++...+.. +|+++++|+.+++.
T Consensus 60 i~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~- 137 (261)
T 4gek_A 60 IGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI- 137 (261)
T ss_dssp HHHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-
T ss_pred HHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-
Confidence 33344432 4688999999999999999999875 5789999999999999999999887764 89999999998765
Q ss_pred cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++||+|+++.++++++ +...+++++.++|||||++++.....
T Consensus 138 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 138 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 5799999999999984 45678999999999999999976644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=152.09 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=101.9
Q ss_pred HHHHHc-CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cC
Q 018346 120 LYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-AS 196 (357)
Q Consensus 120 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~ 196 (357)
.++..+ .+.++.+|||+|||+|..+..+++..| .+|+|+|+|+.+++.|++++...+++ +++++++|+.+++.+ ++
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 344444 456788999999999999999999975 49999999999999999999998885 599999999887755 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.+++++ +...+++++.++|||||++++.+++.
T Consensus 115 fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 115 LDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASW 153 (257)
T ss_dssp EEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 9999999999999 78999999999999999999998753
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=160.07 Aligned_cols=129 Identities=25% Similarity=0.381 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc
Q 018346 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~ 188 (357)
.+......+...+.....+.++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.+++++...+.++++++.+|+
T Consensus 17 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~ 96 (276)
T 3mgg_A 17 RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96 (276)
T ss_dssp ------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred hHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc
Confidence 33333333334444445557889999999999999999999988899999999999999999999998888999999999
Q ss_pred CCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 189 STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 189 ~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.+++.+ ++||+|+++.++++++++..+++++.++|||||++++..+...
T Consensus 97 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (276)
T 3mgg_A 97 FSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG 146 (276)
T ss_dssp GGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGG
T ss_pred ccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 987654 7899999999999999999999999999999999999887653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=148.70 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc------------CCCCeEEEEec
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIVAD 187 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~------------~~~~v~~~~~d 187 (357)
.++..+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.... ...+++++++|
T Consensus 13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHhcccCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 3445556678899999999999999999988 789999999999999998876421 12489999999
Q ss_pred cCCCccc--cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEecc
Q 018346 188 ISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 188 ~~~~~~~--~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.++++. ++||+|+++.++++++ +...+++++.++|||||++++.+..
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 9998764 6899999999999884 4567899999999999996555443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=158.13 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=105.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
.+..+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++...+.+++.++.+|+.+++++ +
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 34456666677788999999999999999999884 59999999999999999999888877899999999987765 7
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|+++.+++|++++..+++++.++|||||++++..+..+
T Consensus 103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 144 (260)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred CEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999876543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=155.84 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=112.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC-CCccccC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~ 196 (357)
...+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++....+ ++.+...+.. .....++
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v-~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV-TIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC-EEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc-eeeeeecccccccccCCC
Confidence 345666777888999999999999999999987 78999999999999999998755411 2222222220 0111368
Q ss_pred ccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCCCC----------------------CcccccCCccchh
Q 018346 197 YDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF----------------------AYHFEDTNDDDWI 252 (357)
Q Consensus 197 fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------------~~~~~~~~~~~~~ 252 (357)
||+|+++.+++|+ ++...+++++.++| |||+++++....... ...........|+
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~i 189 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKFFDPSDKTFHFREAGDVL 189 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHHEETTTTEEEGGGTTHHH
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeeeecCcccceehhhhhhHH
Confidence 9999999999987 56778999999999 999999986543110 0000012357899
Q ss_pred hhcccCCCCCCCHHHHHhhcC
Q 018346 253 TKYFFTGGTMPSANLLLYFQD 273 (357)
Q Consensus 253 ~~~~~~~~~~p~~~~~~~~~~ 273 (357)
.+++||+|.+|+...+.....
T Consensus 190 ~~~~~p~g~~~~~~~~~~~~~ 210 (261)
T 3iv6_A 190 DRALVPHGLIDKPTLLEWYRR 210 (261)
T ss_dssp HHHCCCCTTCCHHHHHHHHHH
T ss_pred HhccCCCCcccHHHHHHHHHh
Confidence 999999999999888776553
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=162.35 Aligned_cols=185 Identities=19% Similarity=0.246 Sum_probs=128.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
..+.+.+...++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|+++.. ..+++++.+|+.+++.+ ++|
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCe
Confidence 3455556666789999999999999999998842 399999999999999998765 23899999999887764 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHhhcCCcEE
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSV 277 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 277 (357)
|+|+++.+++++++...+++++.++|||||.+++.+++....... ...|... ..+.........++..+..
T Consensus 110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~- 180 (253)
T 3g5l_A 110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADG-----RQDWYTD---ETGNKLHWPVDRYFNESMR- 180 (253)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSS-----SCSCEEC---SSCCEEEEEECCTTCCCEE-
T ss_pred EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCc-----cccceec---cCCceEEEEeccccccceE-
Confidence 999999999999999999999999999999999987654321110 1112110 0000000000001111111
Q ss_pred EEeEEe-cCccHHHHHHHHHHHHHhcHHHHHHHHHhcCCc
Q 018346 278 VDHWLV-NGKHYAQTSEEWLKRMDNNLASIKPIMESTYGK 316 (357)
Q Consensus 278 ~~~w~~-~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~ 316 (357)
...|.. ....|++|..+|.+.|.++||++.+..++..++
T Consensus 181 ~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~ 220 (253)
T 3g5l_A 181 TSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP 220 (253)
T ss_dssp EEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCG
T ss_pred EEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCch
Confidence 112211 123455689999999999999998876655543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=150.23 Aligned_cols=119 Identities=21% Similarity=0.294 Sum_probs=106.8
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 197 (357)
.+++.+.+.++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+++++...++++++++.+|+.+++.+ ++|
T Consensus 28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 107 (219)
T 3dh0_A 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTV 107 (219)
T ss_dssp HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCE
T ss_pred HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCe
Confidence 35555667788999999999999999999986 6789999999999999999999988887899999999887655 789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|+|+++.+++++++...+++++.++|+|||.+++..+....
T Consensus 108 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 108 DFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred eEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 99999999999999999999999999999999998776544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=154.02 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHH------HHHHHHHHHHHcCC-C
Q 018346 108 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKT------QKEFIEEQCRVLEL-Q 179 (357)
Q Consensus 108 ~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~------~l~~a~~~~~~~~~-~ 179 (357)
..+..++......+++.+.+.++.+|||||||+|.++..+++.+ |..+|+|+|+|+. +++.|++++...++ +
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~ 101 (275)
T 3bkx_A 22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC
Confidence 35667778888888988888899999999999999999999985 6689999999997 99999999988776 4
Q ss_pred CeEEEEec-c--CCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 180 NVEIIVAD-I--STFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 180 ~v~~~~~d-~--~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+++++.+| . ..++++ ++||+|+++.+++|+++...+++.+..+++|||.+++..+....
T Consensus 102 ~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 102 RLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp GEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred ceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 89999998 3 333433 78999999999999988888888888888889999998877654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=156.01 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=115.9
Q ss_pred hhhhhcCCChHHHHHhhcCCCCccccccCC-CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSD-ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 76 ~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~-~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
..+.+|+....+|+..++.++.....-|.. ......+....+.+.-...+.+.++.+|||||||+|.++..++.+.+++
T Consensus 68 ~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga 147 (298)
T 3fpf_A 68 LIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGM 147 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCC
Confidence 346888888888888777654322110000 0011111223333333456788899999999999998775555555689
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|+|+|+++++.|+++++..|+++++|+++|+.+++ .++||+|++... .++..++++++.++|||||++++...
T Consensus 148 ~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 148 RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 99999999999999999999888889999999998875 578999998655 47889999999999999999998764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=147.62 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=104.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~- 194 (357)
....+++.+...++ +|||+|||+|.++..+++. |+.+|+|+|+|+.+++.|++++...++. +++++++|+.+++.+
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 44556666666666 9999999999999999988 6889999999999999999999988874 899999999987655
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++||+|+++.+++|+++...+++++.++|+|||.+++....
T Consensus 110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 78999999999999999999999999999999999997643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=149.57 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=106.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
...+++.+.+.++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.+++++...+.++++++.+|+.+++++ ++
T Consensus 10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3456677788899999999999999999999874 59999999999999999999888877899999999887765 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|+++.+++|+++...+++++.++|||||++++..+..+
T Consensus 88 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999876554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-19 Score=162.07 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.....+++.+.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++++...++++++++.+|+.+...
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 3556677777888899999999999999999998875 47899999999999999999999888789999999987543
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC--CCCcccccCCccchhhhcccCCCCCCCHHHHHhh
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK--TFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYF 271 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 271 (357)
.++||+|+++.+++++. +.+.+.|||||++++...+.. .............|..++++|.+.+|........
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 215 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNL 215 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECCCCBCCGGGSCH
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCCCcccceEEEEEEeCCcEEEEEeccEEEEEccCccccc
Confidence 37899999999999886 467889999999999876543 1111111112346888899998888775433221
Q ss_pred c-CCcEEEEeEEecCccHHHHHHHHHH-HHHhcH
Q 018346 272 Q-DDVSVVDHWLVNGKHYAQTSEEWLK-RMDNNL 303 (357)
Q Consensus 272 ~-~~~~~~~~w~~~g~~y~~tl~~w~~-~l~~~~ 303 (357)
. .....+. ...|.+|++.|.. ++.+..
T Consensus 216 ~~~~~~~~~-----~~~y~~tl~~~~~~~f~~~~ 244 (317)
T 1dl5_A 216 LERNRKLLR-----EFPFNREILLVRSHIFVELV 244 (317)
T ss_dssp HHHHHTTCC-----CCCEEEEEECTTHHHHHHHH
T ss_pred cccchhhhh-----cccchhhccCcchhhhhhhh
Confidence 1 1111111 1226677888886 666443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-18 Score=148.08 Aligned_cols=118 Identities=24% Similarity=0.354 Sum_probs=101.9
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCc
Q 018346 119 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 197 (357)
..+++.+. ..++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.|++++...+ +++++++|+.+.+++++|
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~f 110 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKY 110 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCc
Confidence 34444444 456789999999999999999999989999999999999999999876554 899999999987766889
Q ss_pred cEEEEcccccchhhHH--HHHHHHHHhcccCceEEEEeccCCC
Q 018346 198 DRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|+|+++.+++++++.. .+++++.++|||||.+++.++....
T Consensus 111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 9999999999996554 5999999999999999998876654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-18 Score=145.93 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=96.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-----CeEEEEeccCCCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTFEM 193 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~~~~ 193 (357)
+.+++.+...++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|++++...+++ +++++++|+...+.
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 3344444445678999999999999999999877789999999999999999998777664 79999999976654
Q ss_pred c-cCccEEEEcccccchhhH--HHHHHHHHHhcccCceEEEEe
Q 018346 194 E-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ++||+|+++.+++|+++. ..+++++.++|||||.+++..
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 4 789999999999999644 899999999999999666543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=152.68 Aligned_cols=117 Identities=21% Similarity=0.359 Sum_probs=103.9
Q ss_pred HHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
+..+++.+ .+.++.+|||+|||+|..+..+++.+| +.+|+|+|+|+.+++.|++++...+. +++++++|+.+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 88 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELND 88 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSS
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcCC
Confidence 33344433 456789999999999999999999887 48999999999999999999887766 8999999999877668
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+||+|+++.+++++++...+++++.++|||||++++..+.
T Consensus 89 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 8999999999999999999999999999999999998876
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=147.13 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=93.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ++++++.+|+.+++.+++||+|+++.++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l 116 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTIVSTYAF 116 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEEEEESCG
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEEEECcch
Confidence 347889999999999999999987 7899999999999999988765 3789999999987655889999999999
Q ss_pred cchhhHHH--HHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMKNYQN--LLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++++... +++++.++|||||.+++.++...
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 117 HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99987766 99999999999999999876543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=160.55 Aligned_cols=209 Identities=15% Similarity=0.160 Sum_probs=139.2
Q ss_pred HHhHhcCCCCHHHHH---HHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHH------
Q 018346 17 LSSLERNLLPDAVIR---RLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSF------ 87 (357)
Q Consensus 17 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~------ 87 (357)
.+.++.+..|+..++ ..++..+..++.....+..+........++++++..++..+. ...+.++..+
T Consensus 123 ~~~~~~~~lpd~~~~~~~~~i~~~~~~~l~~~~~~~f~~~~~~~~~~~~~Lr~~~I~~vl----~a~~~vPr~~~e~il~ 198 (433)
T 1u2z_A 123 IEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHL----ETIDKIPRSFIHDFLH 198 (433)
T ss_dssp HHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHH----TTCCEEEHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHhhccHHHHH----HHHHhCCHHHHHHHHH
Confidence 345566777887776 566777767776666655666666666666666444433221 2223333332
Q ss_pred --HHHhhcCCCCccccc--cCC--CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC
Q 018346 88 --FKLVLGKYFKYSCCY--FSD--ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161 (357)
Q Consensus 88 --~~~~l~~~~~y~~~~--f~~--~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~ 161 (357)
|...+.|...+...+ |.+ ..+.. ...+..+++.+.+.++.+|||||||+|.++..+++..+..+|+|+|+
T Consensus 199 ~aY~~~l~P~~~~l~~Y~~~s~~~yGet~----p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDi 274 (433)
T 1u2z_A 199 IVYTRSIHPQANKLKHYKAFSNYVYGELL----PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEI 274 (433)
T ss_dssp HHHHHHTGGGGGGGCSCCSSGGGCCCCBC----HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHhhccccHHHHHHhhhcccccccccc----HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeC
Confidence 322232211111111 000 01122 23455677777888899999999999999999999876679999999
Q ss_pred CHHHHHHH-------HHHHHHcC--CCCeEEEEeccCCC--cc---ccCccEEEEcccccchhhHHHHHHHHHHhcccCc
Q 018346 162 SKTQKEFI-------EEQCRVLE--LQNVEIIVADISTF--EM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 227 (357)
Q Consensus 162 s~~~l~~a-------~~~~~~~~--~~~v~~~~~d~~~~--~~---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG 227 (357)
|+.+++.| ++++...| .++++++++|.... ++ .++||+|+++.++ +.++....++++.+.|||||
T Consensus 275 s~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 275 MDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGC 353 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCe
Confidence 99999998 88888888 46899999865432 11 2689999998766 34678888999999999999
Q ss_pred eEEEEec
Q 018346 228 LLFVHHF 234 (357)
Q Consensus 228 ~l~~~~~ 234 (357)
.+++..+
T Consensus 354 ~lVi~d~ 360 (433)
T 1u2z_A 354 KIISLKS 360 (433)
T ss_dssp EEEESSC
T ss_pred EEEEeec
Confidence 9998643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=140.56 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....++..+.+.++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.|++++...++++++++.+|+.+.... +
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 334566777888899999999999999999999988899999999999999999999998888899999999765433 6
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+++.+++ +...+++++.++|+|||++++..+..
T Consensus 108 ~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 108 DPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp CCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred CCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 799999998876 67899999999999999999976653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=153.48 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=102.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc-c-c
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-M-E 194 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~-~-~ 194 (357)
+..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+++ . .
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 44556655543 679999999999999999987 78999999999999999999988887 58999999999876 3 3
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++||+|+++.+++|++++..+++++.++|||||.+++..++..
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 7899999999999999999999999999999999999887653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=145.64 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=95.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-----CeEEEEeccCCCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-----NVEIIVADISTFE 192 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~~~ 192 (357)
++.+.+.+...++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|++++...+++ +++++.+|+...+
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 33344444345678999999999999999998877789999999999999999998776653 7999999997765
Q ss_pred cc-cCccEEEEcccccchhhH--HHHHHHHHHhcccCceEEEE
Q 018346 193 ME-ASYDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. ++||+|+++.+++|+++. ..+++++.++|||||.++..
T Consensus 98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 44 789999999999999754 79999999999999955443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=141.27 Aligned_cols=114 Identities=19% Similarity=0.312 Sum_probs=99.6
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...+.++++++.+|+.+.+..++||+|
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v 101 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFI 101 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEE
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEE
Confidence 334445557789999999999999999987 779999999999999999999888877899999999887656789999
Q ss_pred EEcccccchh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.++++++ +...+++++.++|||||.+++..+..
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 9999999986 88999999999999999988765533
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=149.71 Aligned_cols=182 Identities=15% Similarity=0.111 Sum_probs=120.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhccCCccccchhhhhhhcCCChHHHHHhhcCCCCcccc
Q 018346 22 RNLLPDAVIRRLSRLLLGGRLRSGYKPSAELQLSDLLQFAHSLREMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCC 101 (357)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~~ 101 (357)
.|+......+.++..++..++....-+.+.+.+..+. ... .++.-..+...+. .+.+
T Consensus 28 ~Gi~~~~~k~~~~~~Rl~~r~~~~~~~~~~~y~~~l~-------~~~-----------~~~e~~~l~~~lt-----~~~t 84 (274)
T 1af7_A 28 AGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLE-------ANQ-----------NSAEWQAFINALT-----TNLT 84 (274)
T ss_dssp HCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHH-------HCT-----------TCTHHHHHHHHHC-----CCCC
T ss_pred HCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHc-------cCC-----------CHHHHHHHHHHHh-----hcCc
Confidence 4777666677777777777776655545544444332 100 0111112222222 2224
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccH----HHHHHHHHCC----CcEEEEEcCCHHHHHHHHHHH
Q 018346 102 YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 102 ~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~p----~~~v~~vD~s~~~l~~a~~~~ 173 (357)
.|.++...+......++.. .++.+|||+|||+|. +++.+++..| +.+|+|+|+|+.+++.|++++
T Consensus 85 ~FfRd~~~f~~l~~~llp~-------~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~ 157 (274)
T 1af7_A 85 AFFREAHHFPILAEHARRR-------HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI 157 (274)
T ss_dssp CTTTTTTHHHHHHHHHHHS-------CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred cccCChHHHHHHHHHccCC-------CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence 5555555555443333322 245799999999998 6677777644 469999999999999999874
Q ss_pred HH-----------------------cC-------C-CCeEEEEeccCCCccc--cCccEEEEcccccchhh--HHHHHHH
Q 018346 174 RV-----------------------LE-------L-QNVEIIVADISTFEME--ASYDRIYSIEMFEHMKN--YQNLLKK 218 (357)
Q Consensus 174 ~~-----------------------~~-------~-~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~~~~--~~~~l~~ 218 (357)
.. .+ + ++|.|.++|+.+.+++ ++||+|+|..+++|+++ ..+++++
T Consensus 158 y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~ 237 (274)
T 1af7_A 158 YRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRR 237 (274)
T ss_dssp EEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHH
T ss_pred CchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHH
Confidence 10 01 0 2699999999885433 68999999999999954 4889999
Q ss_pred HHHhcccCceEEEEe
Q 018346 219 ISKWMKEDTLLFVHH 233 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~ 233 (357)
+.+.|+|||++++..
T Consensus 238 ~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 238 FVPLLKPDGLLFAGH 252 (274)
T ss_dssp HGGGEEEEEEEEECT
T ss_pred HHHHhCCCcEEEEEe
Confidence 999999999999843
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=139.00 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=96.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...++++++++++|+.+... .++||+|++++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999988875 356899999999999999999999888789999999987532 37899999999
Q ss_pred cccch-hhHHHHHHHHHH--hcccCceEEEEeccCCC
Q 018346 205 MFEHM-KNYQNLLKKISK--WMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 205 ~~~~~-~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~ 238 (357)
++++. ++...+++.+.+ +|+|||.++++......
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~ 158 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA 158 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence 98885 788999999999 99999999998876544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-18 Score=149.73 Aligned_cols=115 Identities=21% Similarity=0.275 Sum_probs=102.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 197 (357)
...+++.+...++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.++++ .++++++.+|+.+++..++|
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~f 96 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKPAQKA 96 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCCSSCE
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCccCCc
Confidence 3456677777788999999999999999999998889999999999999999887 23899999999987744789
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|+++.+++++++...+++++.++|||||.+++.++...
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 136 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNL 136 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCT
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCC
Confidence 9999999999999999999999999999999999987553
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=139.64 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++ .+.++++++++|+.++...++||+|+++.++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l 117 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWL 117 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEEEEEEESCG
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCceeEEEEechh
Confidence 456789999999999999999988 7899999999999999887 4556899999999887334889999999999
Q ss_pred cchhhH--HHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+++. ..+++++.++|||||.+++.+++.+
T Consensus 118 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 118 AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 999774 8999999999999999999988763
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-18 Score=148.49 Aligned_cols=162 Identities=17% Similarity=0.244 Sum_probs=118.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--ccc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~fD~Ii~~~ 204 (357)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ++++.+|+.+. +++ ++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~ 109 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISH 109 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence 46789999999999999999988 67899999999999888764 78888888764 333 7899999999
Q ss_pred cccchh--hHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCC-CCCCHHHHHhh-c-CCcEEEE
Q 018346 205 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGG-TMPSANLLLYF-Q-DDVSVVD 279 (357)
Q Consensus 205 ~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~-~-~~~~~~~ 279 (357)
+++|++ +...+++++.++|||||++++.+++.... ..+...+..+.. ...+...+... . .++..++
T Consensus 110 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 110 FVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp CGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred chhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence 999997 66999999999999999999998875432 112222233332 23343444333 2 3666555
Q ss_pred eEEec---------CccHHHHHHHHHHH-HHhcHHHHHHH
Q 018346 280 HWLVN---------GKHYAQTSEEWLKR-MDNNLASIKPI 309 (357)
Q Consensus 280 ~w~~~---------g~~y~~tl~~w~~~-l~~~~~~~~~~ 309 (357)
..... +.+ .+++..|.++ +.++...+.++
T Consensus 181 ~~~~~~~~~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~ 219 (240)
T 3dli_A 181 IEFFEECEELTKLAKID-SNTVSEEVIRVINENIEKLNRI 219 (240)
T ss_dssp EEEECCCCTTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCcccccccccc-cccccHHHHHhhhhhHHHHHhh
Confidence 44332 133 5678899998 77777666655
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=158.28 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHc-----C-C--CCeEEEEeccCCC------
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-----E-L--QNVEIIVADISTF------ 191 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~-----~-~--~~v~~~~~d~~~~------ 191 (357)
..++.+|||+|||+|..+..+++.+ |+.+|+|+|+|+.+++.|++++... | . ++++|+++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4478899999999999999999886 6789999999999999999988754 3 2 4899999999886
Q ss_pred ccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 192 EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 192 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++ ++||+|+++.++++++++..+++++.++|||||++++..+...
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 207 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD 207 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc
Confidence 444 7899999999999999999999999999999999999876543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=144.69 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-c--c-ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E--M-EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~--~-~~~fD~Ii~~~ 204 (357)
++.+|||||||+|.++..+++..|+..|+|+|+|+.+++.|++++...+++|+.++++|+.++ + + +++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999999999999999999988999999998774 2 2 37899999984
Q ss_pred cccch--hhH------HHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHM--KNY------QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~--~~~------~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+. ... ..+++.+.++|||||.+++.+...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 43322 221 259999999999999999987543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=147.33 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=90.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-----------------cCCCCeEEEEeccC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-----------------LELQNVEIIVADIS 189 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-----------------~~~~~v~~~~~d~~ 189 (357)
..++.+|||+|||+|..+..|++. +.+|+|+|+|+.+++.|+++... ....+|+|+++|+.
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 346789999999999999999987 78999999999999999876531 01238999999999
Q ss_pred CCccc--cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEecc
Q 018346 190 TFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 190 ~~~~~--~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++++. ++||+|+++.++++++ +...+++++.++|||||++++.+..
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 98764 7899999999999883 4678999999999999999766554
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=144.91 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=91.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccEEEEc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSI 203 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~Ii~~ 203 (357)
.++.+|||||||+|..++.++..+|+.+|+++|+|+.+++.|++++...++++|+++++|+.+++. .++||+|+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 467899999999999999999998999999999999999999999999998789999999987643 2689999997
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+ .+...+++.+.++|||||++++..
T Consensus 159 a~----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AV----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SS----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Cc----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 54 456889999999999999988754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-17 Score=136.25 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-ccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~ 194 (357)
....+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.|++++...+.+ ++ ++.+|..+. +..
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 344566667778889999999999999999999888899999999999999999999988886 88 888888553 222
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++||+|+++.++++ ..+++++.++|||||.+++..++.
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 68999999999877 678999999999999999987654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=143.36 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+ +++++++|+.+.+..++||+|++
T Consensus 45 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 45 LSLSSGAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTAELFDLIVV 120 (216)
T ss_dssp HHTTTSSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCSCCEEEEEE
T ss_pred HHcccCCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCCCCccEEEE
Confidence 3455567789999999999999999987 5799999999999999999876543 89999999998775588999999
Q ss_pred cccccchhhH---HHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHMKNY---QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+.+++|+++. ..+++++.++|||||.+++.++..
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999999766 577999999999999999987754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=148.13 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=98.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.+...++.+|||+|||+|..+..+++ ++.+|+|+|+|+.+++.++++. +++.+..+|+.+++++++||+|
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcCEE
Confidence 44455667889999999999999999998 5889999999999999998765 3789999999987766889999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+++.++++++++..+++++.++|||||++++..+....
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN 159 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 99999999999999999999999999999998876543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-17 Score=143.16 Aligned_cols=118 Identities=15% Similarity=0.320 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
...+..++......++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. +++++++|+.+++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~ 103 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK 103 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC
Confidence 345566666666667789999999999999999987 78999999999999999999988776 899999999987666
Q ss_pred cCccEEEEcc-cccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIE-MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~-~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++||+|++.. .++++ ++...+++++.++|+|||.+++..++
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 7899999864 33333 56788999999999999999998765
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=135.77 Aligned_cols=116 Identities=15% Similarity=0.320 Sum_probs=101.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~ 196 (357)
..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++++ ++++.+|+.+....++
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 34566667778899999999999999999987 7899999999999999999999888865 9999999987543478
Q ss_pred ccEEEEcccccc-hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|++++++++ ..+...+++.+.++|+|||.+++.++..
T Consensus 120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 999999999887 4678899999999999999999988764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=146.85 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=96.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHc-C-CCCeEEEEeccCCCccc-------cCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL-E-LQNVEIIVADISTFEME-------ASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~-~-~~~v~~~~~d~~~~~~~-------~~f 197 (357)
.++.+|||+|||+|..+..+++.+ ++.+|+|+|+|+.+++.|++++... + .++++|+++|+.+++.. ++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999999999876 7899999999999999999998876 2 34999999999987643 489
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++.+++++ ++..+++++.++|+|||.+++.....
T Consensus 115 D~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 115 DMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp EEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999999999 99999999999999999999855543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=139.51 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=107.2
Q ss_pred hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEE
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 157 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~ 157 (357)
..+|+.....|.......... .... ...+..++.. .+.+|||+|||+|.++..+++. +.+|+
T Consensus 6 ~~~y~~~a~~y~~~~~~~~~~--------~~~~----~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~--~~~v~ 67 (203)
T 3h2b_A 6 SKAYSSPTFDAEALLGTVISA--------EDPD----RVLIEPWATG----VDGVILDVGSGTGRWTGHLASL--GHQIE 67 (203)
T ss_dssp HHHHHCTTTCHHHHTCSSCCT--------TCTT----HHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT--TCCEE
T ss_pred HHHHhhHHHHHHHHhhhhccc--------cHHH----HHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc--CCeEE
Confidence 566777777776655432111 0111 2233333332 2689999999999999999987 67999
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEec
Q 018346 158 GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 158 ~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+|+.+++.++++. ++++++++|+.+++.+ ++||+|+++.+++|++ +...+++++.++|||||.+++..+
T Consensus 68 gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 68 GLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp EECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999998862 3899999999987655 7899999999999995 899999999999999999999887
Q ss_pred cCCC
Q 018346 235 CHKT 238 (357)
Q Consensus 235 ~~~~ 238 (357)
....
T Consensus 143 ~~~~ 146 (203)
T 3h2b_A 143 SGPS 146 (203)
T ss_dssp CCSS
T ss_pred cCCc
Confidence 6543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=143.68 Aligned_cols=105 Identities=22% Similarity=0.363 Sum_probs=95.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++.+|+.+.+..++||+|+++.+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchhh
Confidence 6789999999999999999988 67999999999999999999999888 99999999998765688999999999998
Q ss_pred h--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 209 M--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 209 ~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ ++...+++++.++|+|||.+++.....
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 8 557799999999999999988765543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=139.19 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~ 193 (357)
.....+.+.+.+ .++.+|||+|||+|.++..+++..+ +|+|+|+|+.+++.|+++....+ .+++++.+|+.+.+.
T Consensus 25 ~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~ 99 (227)
T 1ve3_A 25 IETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF 99 (227)
T ss_dssp HHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC
Confidence 334444444443 3578999999999999999998854 99999999999999999988776 489999999988765
Q ss_pred c-cCccEEEEccc--ccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 E-ASYDRIYSIEM--FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 ~-~~fD~Ii~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ ++||+|+++.+ +++.++...+++++.++|+|||.+++..++.
T Consensus 100 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 4 68999999999 6666788999999999999999999988764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=145.67 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++... +++++++|+.+...+++||+|++..+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVLTHVLE 114 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEEESCGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEEhhHHH
Confidence 36779999999999999999987 45899999999999999887543 7999999998874447899999999999
Q ss_pred chhhHHHHHHHHH-HhcccCceEEEEeccCCC
Q 018346 208 HMKNYQNLLKKIS-KWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 208 ~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~ 238 (357)
|++++..+++++. ++|||||++++.+++...
T Consensus 115 ~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 115 HIDDPVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred hhcCHHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 9999999999999 999999999999886643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=138.47 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=93.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~~~ 205 (357)
++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.|++++...+++++.++++|+.+++ ++ ++||+|+++.+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 5789999999999999999999998999999999999999999999988889999999998865 33 68999999987
Q ss_pred ccchh--------hHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMK--------NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+.. ....+++.+.++|+|||.+++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 54332 236799999999999999999764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=136.00 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=92.1
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii 201 (357)
+.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++ .+++++..+| .+.+ ++||+|+
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~ 80 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFIL 80 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEE
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEE
Confidence 33445678899999999999999999875 4999999999999999887 3489999999 3333 7899999
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
++.+++++++...+++++.++|||||.+++..+....
T Consensus 81 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 81 FANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 9999999999999999999999999999998876654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=146.93 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
+++.+.+..+ .+.+|||||||+|..+..|++. +.+|+|+|+|+.|++.|+++ ++++++++|+++++++ +
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRH------PRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCC------TTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhc------CCceeehhhhhhhcccCC
Confidence 3444444443 4579999999999999999987 57999999999999877532 3899999999998776 8
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|++..++|++ +..++++++.++|||||++++......
T Consensus 99 sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 99 SVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 89999999999887 577899999999999999998776544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=138.13 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....+++.+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++...+.++++++.+|+.+.... +
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA 142 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence 4455666777888999999999999999999988 789999999999999999999998887899999999875443 7
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+||+|+++.+++++++ .+.+.|||||++++..++
T Consensus 143 ~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 143 PFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 8999999999998864 578999999999998886
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=143.35 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=95.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc-ccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~-~~~ 207 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. +++++++|+.+++.+++||+|+++. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCcccc
Confidence 6789999999999999999987 67999999999999999999988776 8999999998876557899999998 999
Q ss_pred ch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+ ++...+++++.++|||||.+++..++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 99 778999999999999999999977754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=143.68 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD 198 (357)
.++......+ .+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++....+. .+++++++|+.+.+..++||
T Consensus 58 ~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 134 (235)
T 3lcc_A 58 HLVDTSSLPL-GRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD 134 (235)
T ss_dssp HHHHTTCSCC-EEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred HHHHhcCCCC-CCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence 3444444444 59999999999999999764 78999999999999999998876433 37999999999876557899
Q ss_pred EEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 199 RIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+++.++++++ +...+++++.++|||||.+++..+...
T Consensus 135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 999999999997 899999999999999999999776543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=135.32 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=89.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii~~ 203 (357)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+++++++++.|...++ .+++||+|+++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 3567899999999999999999987 7899999999999999999999988888999998877642 13789999998
Q ss_pred ccccc---------hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
..+.+ ..+...+++++.++|||||.+++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 43322 245667899999999999999997654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=143.24 Aligned_cols=104 Identities=13% Similarity=0.247 Sum_probs=93.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++ ..+.++++++.+|+.+++.+ ++||+|+++.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 4567889999999999999999987 689999999999999999987 33345899999999887654 7899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+++++++...+++++.++|||||.+++.
T Consensus 113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999999999999999999999987
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=134.86 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=95.4
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-ccCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-EASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-~~~f 197 (357)
.++..+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..+++ +++++.+|+.+... ..+|
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 4556667788899999999999999999987 789999999999999999999999987 89999999987322 2579
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++..+ +.. +++++.++|||||++++...+.
T Consensus 124 D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 124 EAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp SEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 999998755 455 9999999999999999987654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=144.94 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=94.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+..+++++.+|+.+++.+ ++||+|+++.+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998775 569999999999999999998766434799999999887655 5899999999999
Q ss_pred chhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++++ ...+++++.++|||||++++.++...
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 9976 55899999999999999999877543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=147.30 Aligned_cols=106 Identities=19% Similarity=0.360 Sum_probs=90.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC------------------------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------------------------ 178 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~------------------------------ 178 (357)
++.+|||||||+|..+..+++.+++.+|+|+|+|+.+++.|++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 57899999999999999999998889999999999999999998765431
Q ss_pred ----------------------------CCeEEEEeccCCCc------cccCccEEEEcccccchh------hHHHHHHH
Q 018346 179 ----------------------------QNVEIIVADISTFE------MEASYDRIYSIEMFEHMK------NYQNLLKK 218 (357)
Q Consensus 179 ----------------------------~~v~~~~~d~~~~~------~~~~fD~Ii~~~~~~~~~------~~~~~l~~ 218 (357)
.+|+|+++|+.... ..++||+|+|..+++|+. +..+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998643 237899999999997774 78899999
Q ss_pred HHHhcccCceEEEEec
Q 018346 219 ISKWMKEDTLLFVHHF 234 (357)
Q Consensus 219 ~~~~LkpgG~l~~~~~ 234 (357)
+.++|+|||+++++..
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.8e-17 Score=144.79 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
..+.+++.+...++.+|||+|||+|..+..+++ |+.+|+|+|+|+.+++.++++. +++|+.+|+.+++.+ +
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCC
Confidence 445566666777889999999999999999997 4889999999999988776543 899999999987765 7
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+||+|+++.+++|+++...+++++.++|| ||++++.++....
T Consensus 94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp CBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred CEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 89999999999999999999999999999 9999888876543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=142.20 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
.........+++.+...++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.|+++.... ++++++++|+.++
T Consensus 76 ~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA 152 (254)
T ss_dssp HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC
T ss_pred HHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHC
Confidence 3334455666777766778999999999999999999875 568999999999999999887654 4799999999887
Q ss_pred ccc-cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 192 EME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 192 ~~~-~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.+ ++||+|++..+++|+ ++...+++++.++|||||.+++.++.
T Consensus 153 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 654 789999999999999 56889999999999999999998763
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=144.61 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=103.5
Q ss_pred HHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc
Q 018346 118 LELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 194 (357)
Q Consensus 118 l~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 194 (357)
...+++.++. .++.+|||+|||+|..+..+++.+|+.+++++|+| .+++.|+++....++. +++++.+|+.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCC
Confidence 3455666666 67889999999999999999999999999999999 9999999999888774 799999999876555
Q ss_pred cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 195 ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.||+|++..+++++ ++...+++++.++|+|||++++..+..+
T Consensus 231 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 569999999999999 5568999999999999999999877654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=149.74 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=98.8
Q ss_pred CCCCCEEEEECCcccHHHHHHH-HHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIA-QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la-~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
+.++.+|||||||+|..+..++ ...|+.+|+|+|+|+.+++.|++++...++. +++++++|+.+++++++||+|+++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4678999999999999999986 4567899999999999999999999888774 5999999999877668899999999
Q ss_pred cccchhhHHH---HHHHHHHhcccCceEEEEeccCCC
Q 018346 205 MFEHMKNYQN---LLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 205 ~~~~~~~~~~---~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+++|+++... +++++.++|||||++++..+....
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 232 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPP 232 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCT
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 9999966654 799999999999999998876543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=135.59 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=91.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||+|||+|..+..++..+|+.+|+++|+|+.+++.+++++...++++++++.+|+.+.+..++||+|+++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 46899999999999999999988889999999999999999999999888779999999988764478999998653
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.++..+++.+.++|+|||.+++...
T Consensus 142 -~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 -ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4678999999999999999999743
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=139.89 Aligned_cols=106 Identities=23% Similarity=0.328 Sum_probs=94.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ...+++++.+|+.+++.+ ++||+|++..++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINSL 126 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcChH
Confidence 36789999999999999999987 779999999999999998764 224899999999987754 789999999999
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+|+++...+++++.++|+|||.+++.+++...
T Consensus 127 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 127 EWTEEPLRALNEIKRVLKSDGYACIAILGPTA 158 (242)
T ss_dssp TSSSCHHHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred hhccCHHHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence 99999999999999999999999999876544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=137.90 Aligned_cols=106 Identities=22% Similarity=0.228 Sum_probs=91.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c-ccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~ 205 (357)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+++++.++++|+.+++ + .++||.|+++.+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5679999999999999999999999999999999999999999999988889999999998753 2 368999998765
Q ss_pred ccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+... ...+++.+.++|||||.+++.+.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 433211 36789999999999999999764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=137.10 Aligned_cols=110 Identities=25% Similarity=0.272 Sum_probs=95.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|..+..++.. ++.+|+|+|+|+.+++.+++++...+. +++++++|+.+++.+ ++||+|++..++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEEEEcChH
Confidence 46789999999999985544444 378999999999999999999887764 799999999987654 789999999999
Q ss_pred cch--hhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 207 EHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 207 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+|+ ++...+++++.++|||||.+++..++....
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 134 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTST
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccch
Confidence 999 788999999999999999999998876543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=141.80 Aligned_cols=139 Identities=15% Similarity=0.250 Sum_probs=105.4
Q ss_pred hhhcC-CChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEE
Q 018346 78 EQHYE-LPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 156 (357)
Q Consensus 78 ~~~y~-~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v 156 (357)
..+|+ ...++|+.+.... ..........+.+.+.... .++.+|||+|||+|.++..+++. +.+|
T Consensus 11 ~~~y~~~~a~~yd~~~~~~-----------~~~~~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v 75 (263)
T 3pfg_A 11 QADYSGEIAELYDLVHQGK-----------GKDYHREAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS--FGTV 75 (263)
T ss_dssp BCSCCHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT--SSEE
T ss_pred ccccchhHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc--CCeE
Confidence 34566 4556666665421 1122222233344343333 35689999999999999999987 5699
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc-cccchh---hHHHHHHHHHHhcccCceEEEE
Q 018346 157 TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-MFEHMK---NYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 157 ~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~-~~~~~~---~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+|+.+++.|+++.. +++++++|+.+++.+++||+|+++. +++|++ +...+++++.++|||||.+++.
T Consensus 76 ~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 76 EGLELSADMLAIARRRNP-----DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp EEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEEECCHHHHHHHHhhCC-----CCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999999999999988743 7899999999877668899999998 999994 6778899999999999999997
Q ss_pred eccC
Q 018346 233 HFCH 236 (357)
Q Consensus 233 ~~~~ 236 (357)
....
T Consensus 151 ~~~~ 154 (263)
T 3pfg_A 151 PWWF 154 (263)
T ss_dssp CCCC
T ss_pred eccC
Confidence 5543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=136.36 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
++..... ++.+|||+|||+|..+..+ +. +|+|+|+|+.+++.++++. +++.++.+|+.+++.+ ++||
T Consensus 29 ~l~~~~~-~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD 97 (211)
T 2gs9_A 29 ALKGLLP-PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFD 97 (211)
T ss_dssp HHHTTCC-CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEE
T ss_pred HHHHhcC-CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEE
Confidence 4443332 7789999999999998877 45 9999999999999998876 3789999999887655 6899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+++.+++|++++..+++++.++|||||.+++.+++..
T Consensus 98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999999999999999999999999999999999988654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=135.99 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 194 (357)
..+..+...+ .++.+|||+|||+|.++..++...|+++|+++|+|+.+++.+++++...|.. ++++ .|.....++
T Consensus 38 ~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~ 113 (200)
T 3fzg_A 38 DFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYK 113 (200)
T ss_dssp HHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTT
T ss_pred HHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCC
Confidence 3455555555 3578999999999999999998889999999999999999999999999885 5666 666554444
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
++||+|++..++|++++.+..+.++.+.|+|||+++-
T Consensus 114 ~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 114 GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 7899999999999997777788899999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=135.02 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=91.8
Q ss_pred CCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cc-ccCccEEEE
Q 018346 126 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASYDRIYS 202 (357)
Q Consensus 126 ~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~Ii~ 202 (357)
.+.++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|++++...++ +++++++|+... +. .++||+|++
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEE
Confidence 35678999999999 999999999886 68999999999999999999999988 899999996543 22 278999999
Q ss_pred cccccchhh-------------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHMKN-------------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++++.+..+ +..+++.+.++|||||++++..+..
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 998865432 5789999999999999999976643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=139.90 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=96.2
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD 198 (357)
+...+...++.+|||+|||+|..+..+++. +. +|+|+|+|+.+++.++++... .+++++.+|+.+.+.+ ++||
T Consensus 35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEE
T ss_pred HHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCce
Confidence 444455567889999999999999999987 45 999999999999999887543 2799999999887654 7899
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|++..+++++++...+++++.++|+|||.+++.+++.
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 99999999999999999999999999999999988654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=145.20 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=93.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC----CCeEEEEeccCCCc---cc-cCccE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----QNVEIIVADISTFE---ME-ASYDR 199 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~----~~v~~~~~d~~~~~---~~-~~fD~ 199 (357)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++....+. .++.+..+|+.+++ +. ++||+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 46789999999999999999988 67999999999999999988754332 37889999988765 33 78999
Q ss_pred EEEc-ccccchhh-------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSI-EMFEHMKN-------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~-~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++. .+++|+++ ...+++++.++|||||++++..++.
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 9998 89999988 9999999999999999999988764
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=136.41 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ++.+..+|+..++..++||+|+++.+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAVWAHACLL 113 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEEEECSCGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEEEecCchh
Confidence 46789999999999999999987 679999999999999999876 5677889998877558899999999999
Q ss_pred chh--hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 208 HMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 208 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++ +...+++++.++|||||++++..+...
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 145 (211)
T 3e23_A 114 HVPRDELADVLKLIWRALKPGGLFYASYKSGE 145 (211)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence 996 888999999999999999999876543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=138.15 Aligned_cols=108 Identities=23% Similarity=0.431 Sum_probs=96.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-----CCeEEEEeccCCCccc-cCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEME-ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~fD~Ii 201 (357)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++ +++.++.+|+..++.+ ++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 47789999999999999999987 78999999999999999999877665 2589999999987654 7899999
Q ss_pred EcccccchhhHH---HHHHHHHHhcccCceEEEEeccCC
Q 018346 202 SIEMFEHMKNYQ---NLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 202 ~~~~~~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++.+++++++.. .+++++.++|+|||.+++.++...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 999999997766 899999999999999999887653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=145.87 Aligned_cols=122 Identities=15% Similarity=0.143 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-------HHcCC--CCeEEE
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL--QNVEII 184 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-------~~~~~--~~v~~~ 184 (357)
....+..+++.+.+.++.+|||||||+|.+++.++...+..+|+|||+|+.+++.|+++. ...|+ ++|+|+
T Consensus 158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi 237 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 237 (438)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 344667788888889999999999999999999998875557999999999999998764 33454 489999
Q ss_pred EeccCCCccc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 185 VADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 185 ~~d~~~~~~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++|+.+.++. ..||+|+++.++ +.++....+.++.+.|||||++++.....
T Consensus 238 ~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 238 RGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp ECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred ECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 9999987653 479999999876 35788888999999999999999865544
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=154.96 Aligned_cols=198 Identities=16% Similarity=0.142 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHh-ccCCccccchhhh--------hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHH
Q 018346 51 ELQLSDLLQFAHSL-REMPIAIQTDKAK--------EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELY 121 (357)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~p~~~~~~~~~--------~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l 121 (357)
++....+..+++++ ++.|.+++.++.. ..+|+.... ...++.++ .......+.+
T Consensus 88 ~~~~~~~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~----------------~~t~~~~~~i 150 (480)
T 3b3j_A 88 PHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDY----------------VRTGTYQRAI 150 (480)
T ss_dssp --------------------------------CCEEEEGGGCSCH-HHHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcCh----------------HhHHHHHHHH
Confidence 44556677777777 7778888874311 233333222 22222221 0112233445
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEE
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I 200 (357)
++.+...++.+|||||||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+++ ++|+++.+|+.+++.+++||+|
T Consensus 151 l~~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~I 228 (480)
T 3b3j_A 151 LQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDII 228 (480)
T ss_dssp HHTGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEE
T ss_pred HHhhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEE
Confidence 55555557889999999999999999874 567999999998 99999999999988 5899999999987655789999
Q ss_pred EEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCCCCCccccc-----CCccchhhhcccCCCCCCCHHH
Q 018346 201 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED-----TNDDDWITKYFFTGGTMPSANL 267 (357)
Q Consensus 201 i~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~ 267 (357)
+++.+++++ ++....+..+.++|||||.+++...+....+..... ....+++....+++..++....
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~~~~~~~w~~~~~~g~dl~~l~~ 302 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRG 302 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHHHHHHHHHHSSCBTTBCCGGGHH
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHHhhccCccccccCCCcChhhhhh
Confidence 999887766 445667788899999999998654332111110000 0012233344678887776543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-17 Score=145.41 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=105.8
Q ss_pred hhhcCCChHHHHHhhcCCCCccc--c-ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSC--C-YFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~--~-~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.+|+.+.++...|......|.. . ........+.......+..+.... ..++.+|||||||+|.++..+++.. ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~-~~ 84 (236)
T 1zx0_A 7 TPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAP-ID 84 (236)
T ss_dssp -CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSC-EE
T ss_pred CCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcC-CC
Confidence 34567777777777766555531 0 000000111112222333333333 3567899999999999999997643 35
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--ccc-cCccEEEE-cccc----cchhhHHHHHHHHHHhcccC
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYS-IEMF----EHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~fD~Ii~-~~~~----~~~~~~~~~l~~~~~~Lkpg 226 (357)
+|+|+|+|+.+++.|+++....+. +++++++|+.++ +++ ++||+|++ ..++ .+..+...+++++.++||||
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCC-CeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCC
Confidence 999999999999999998877664 899999999876 444 78999999 4432 12345567899999999999
Q ss_pred ceEEEEec
Q 018346 227 TLLFVHHF 234 (357)
Q Consensus 227 G~l~~~~~ 234 (357)
|++++...
T Consensus 164 G~l~~~~~ 171 (236)
T 1zx0_A 164 GVLTYCNL 171 (236)
T ss_dssp EEEEECCH
T ss_pred eEEEEEec
Confidence 99988554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=134.17 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc--cccCccEEE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
.+.++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.|++++...++ ++++++++|+.+++ .+++||+|+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 35678899999999999999999885 567999999999999999999999887 58999999988764 237899999
Q ss_pred Eccccc---------chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++.++. ...+...+++++.++|||||++++..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 998661 12356679999999999999999987543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-17 Score=140.80 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=86.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH----HHcCCCCeEEEEeccCCCccc-cCccEE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC----RVLELQNVEIIVADISTFEME-ASYDRI 200 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~----~~~~~~~v~~~~~d~~~~~~~-~~fD~I 200 (357)
...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.+.+++ ...+.++++++++|+.++++. ++ |.|
T Consensus 24 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v 102 (218)
T 3mq2_A 24 RSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GEL 102 (218)
T ss_dssp HTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred hccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEE
Confidence 356788999999999999999999999999999999999888644333 345666899999999987765 44 666
Q ss_pred EEcc---cc--cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIE---MF--EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~---~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.. .. +++++...+++++.++|||||.+++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 6433 22 2556668999999999999999999554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=140.17 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=94.5
Q ss_pred HHHcCCC-CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc---ccC
Q 018346 122 CERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EAS 196 (357)
Q Consensus 122 ~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~ 196 (357)
....... ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++++..+++. +++++++|+.+... .++
T Consensus 41 ~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 3345666 789999999999999999998864 49999999999999999999999885 79999999988653 378
Q ss_pred ccEEEEcccccch--------------------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 197 YDRIYSIEMFEHM--------------------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 197 fD~Ii~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
||+|++|+++... .+...+++.+.++|||||++++..+.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 9999999987544 34567999999999999999996543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=146.40 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc
Q 018346 115 KAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~ 192 (357)
..+++.+.+... ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..+++ +++++.+|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcc
Confidence 445555554442 336789999999999999999987 67999999999999999999999887 6999999999876
Q ss_pred cc-cCccEEEEcccccc-----hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 ME-ASYDRIYSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+ ++||+|++++++++ ..+...+++++.++|||||.+++.....
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 55 78999999999988 4678899999999999999999976543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=146.21 Aligned_cols=115 Identities=11% Similarity=0.152 Sum_probs=96.4
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC---CeEEEEeccCCCccccCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---NVEIIVADISTFEMEASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~---~v~~~~~d~~~~~~~~~f 197 (357)
+++.+...++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++..+++. +++|+.+|+.+....++|
T Consensus 214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~f 293 (375)
T 4dcm_A 214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRF 293 (375)
T ss_dssp HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCE
T ss_pred HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCe
Confidence 45556666678999999999999999999999999999999999999999999988763 589999999874333789
Q ss_pred cEEEEcccccch-----hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++++++++. .....+++.+.++|||||.+++....
T Consensus 294 D~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 294 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp EEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 999999999853 22357899999999999999997643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=135.06 Aligned_cols=111 Identities=20% Similarity=0.356 Sum_probs=95.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccE
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 199 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 199 (357)
.+...+ .++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++....+. +++++.+|+.+.+.+++||+
T Consensus 26 ~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~ 99 (243)
T 3d2l_A 26 WVLEQV--EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNR-HVDFWVQDMRELELPEPVDA 99 (243)
T ss_dssp HHHHHS--CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCGGGCCCSSCEEE
T ss_pred HHHHHc--CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCC-ceEEEEcChhhcCCCCCcCE
Confidence 344443 35689999999999999998865 6999999999999999999887764 89999999988765678999
Q ss_pred EEEcc-cccch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIE-MFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++.. +++|+ ++...+++++.++|+|||.+++..++.
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 99986 88888 677889999999999999999977654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=137.91 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=91.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCCcc---ccC-ccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EAS-YDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~---~~~-fD~Ii~ 202 (357)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...++ ++++++++|+.+... .++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 57899999999999999877763 36999999999999999999999887 689999999876432 367 999999
Q ss_pred cccccchhhHHHHHHHH--HHhcccCceEEEEeccCC
Q 018346 203 IEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~ 237 (357)
+++++ ..+...+++.+ .++|+|||.+++......
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 99965 56677888888 567999999999877654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=133.03 Aligned_cols=119 Identities=8% Similarity=0.162 Sum_probs=96.2
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-cc-c
Q 018346 119 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EM-E 194 (357)
Q Consensus 119 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~~-~ 194 (357)
+.+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+++ +++++.+|+.+. +. .
T Consensus 20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 34444444 457789999999999999999987 4579999999999999999999988874 799999998773 21 2
Q ss_pred cCccEEEEcccccchhhHHHHHHHHH--HhcccCceEEEEeccCCCC
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~ 239 (357)
++||+|+++++++. ......++.+. ++|+|||.+++.+......
T Consensus 99 ~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 144 (177)
T 2esr_A 99 GRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTVLL 144 (177)
T ss_dssp SCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred CCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcccc
Confidence 67999999988742 45567777776 8999999999988766543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=144.02 Aligned_cols=118 Identities=10% Similarity=0.090 Sum_probs=102.9
Q ss_pred HHHHHcCCCC-CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc--ccc
Q 018346 120 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--MEA 195 (357)
Q Consensus 120 ~l~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~ 195 (357)
.+++.++..+ +.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++....++. +++++.+|+.+.+ .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 4566666666 88999999999999999999999999999999 88999999999888774 7999999999865 456
Q ss_pred CccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 196 SYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+||+|++..++|++++ ...+++++.+.|+|||++++..+..+.
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 7999999999999965 489999999999999999998765543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-16 Score=131.77 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++ +|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++....+. ++.++.+|+.+.+.+ ++||+|+++...
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSIFCH 104 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence 356 9999999999999999976 67999999999999999999988877 899999999887654 789999996543
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
.+..+...+++++.++|||||.+++..+.....
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 137 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 334678899999999999999999998876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=141.71 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 195 (357)
....+++..+..++.+|||+|||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ ++|+|+.+|+.+ +.+.
T Consensus 190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~ 267 (369)
T 3gwz_A 190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD 267 (369)
T ss_dssp HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS
T ss_pred hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC
Confidence 345667777777889999999999999999999999999999999 9999999999988876 489999999984 3334
Q ss_pred CccEEEEcccccchhhHH--HHHHHHHHhcccCceEEEEeccCCC
Q 018346 196 SYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+||+|++..+++++++.. ++++++.+.|+|||++++..+..+.
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 899999999999997654 7999999999999999998775543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=138.06 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHcC-CCCCCEEEEECCcc---cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc
Q 018346 113 AEKAMLELYCERSR-LEDGHTVLDVGCGW---GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188 (357)
Q Consensus 113 ~~~~~l~~l~~~~~-~~~~~~vLDiGcG~---G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~ 188 (357)
.+...+..+++.+. ..+..+|||||||+ |.++..+++..|+.+|+++|+|+.+++.|++++... ++++++.+|+
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~ 137 (274)
T 2qe6_A 60 ENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADV 137 (274)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCT
T ss_pred HHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeC
Confidence 34445555555543 23457999999999 998887877788999999999999999999987432 4899999999
Q ss_pred CCCc-----------cc-cCccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 189 STFE-----------ME-ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 189 ~~~~-----------~~-~~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+.. ++ .+||+|+++.++|++++ ...+++++.++|+|||.+++.....
T Consensus 138 ~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 138 RDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 7631 11 47999999999999976 8999999999999999999988765
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=144.00 Aligned_cols=117 Identities=10% Similarity=0.219 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCCcccc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEMEA 195 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~ 195 (357)
..+++.+...+ .+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. .+++++++|+.+++.++
T Consensus 73 ~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 149 (299)
T 3g2m_A 73 REFATRTGPVS-GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDK 149 (299)
T ss_dssp HHHHHHHCCCC-SCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSC
T ss_pred HHHHHhhCCCC-CcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCC
Confidence 34445554433 49999999999999999987 68999999999999999999987763 48999999999987678
Q ss_pred CccEEEEc-ccccchh--hHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 196 SYDRIYSI-EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 196 ~fD~Ii~~-~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+||+|++. .++++++ +...+++++.++|||||.+++.+++...
T Consensus 150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 89988865 6677664 4689999999999999999999887654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=134.59 Aligned_cols=115 Identities=25% Similarity=0.276 Sum_probs=97.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-E 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~ 194 (357)
....+++.+...++.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.++++....+.+++++..+|+..... .
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 34456666677788999999999999999999886 558999999999999999999988888789999999865333 3
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++||+|+++.+++++. +.+.++|||||++++..+...
T Consensus 145 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSSS
T ss_pred CCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCCC
Confidence 6899999999999886 478899999999999887653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=139.04 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=90.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccEEEEc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSI 203 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~Ii~~ 203 (357)
.++.+|||+|||+|..+..++...|+.+|+|+|+|+.+++.|++++...++++++++++|+.+++. .++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 467899999999999999999877889999999999999999999999888789999999877543 3689999997
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+ .++..+++.+.++|+|||.+++..
T Consensus 149 ~~----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 63 568899999999999999998853
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-17 Score=140.84 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.+++.+++.+.. .++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+. +++++++|+.+....
T Consensus 16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~ 94 (215)
T 4dzr_A 16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIE 94 (215)
T ss_dssp HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhh
Confidence 355556666554 678899999999999999999998888999999999999999999988877 899999998873222
Q ss_pred -----cCccEEEEcccccchhh--------------------------HHHHHHHHHHhcccCce-EEEEec
Q 018346 195 -----ASYDRIYSIEMFEHMKN--------------------------YQNLLKKISKWMKEDTL-LFVHHF 234 (357)
Q Consensus 195 -----~~fD~Ii~~~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~-l~~~~~ 234 (357)
++||+|++++++..... +..+++++.++|||||+ +++...
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 68999999988754422 27788899999999999 555443
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=142.50 Aligned_cols=115 Identities=11% Similarity=0.070 Sum_probs=99.5
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDR 199 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~ 199 (357)
+++..+..+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ ++|+|..+|+.+ +.+.+||+
T Consensus 161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~ 238 (332)
T 3i53_A 161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGG 238 (332)
T ss_dssp GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSE
T ss_pred HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcE
Confidence 33444555678999999999999999999999999999999 9999999999988887 489999999974 33348999
Q ss_pred EEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 200 IYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 200 Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++..++|++++ ..++++++.++|+|||++++..+..+
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 999999999976 48899999999999999999876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=141.97 Aligned_cols=109 Identities=19% Similarity=0.246 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHH----HHHHCCCcEE--EEEcCCHHHHHHHHHHHHHc-CCCCeEEE--EeccCCCc------
Q 018346 128 EDGHTVLDVGCGWGSLSLY----IAQKYSNCKI--TGICNSKTQKEFIEEQCRVL-ELQNVEII--VADISTFE------ 192 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~----la~~~p~~~v--~~vD~s~~~l~~a~~~~~~~-~~~~v~~~--~~d~~~~~------ 192 (357)
.++.+|||||||+|.++.. ++..+|+..| +|+|+|++|++.|++++... +++++.+. .++..+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4677999999999987654 3445567754 99999999999999988754 45566554 44444332
Q ss_pred c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ +++||+|+++.+++|++++..+++++.++|||||++++..++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 1 3689999999999999999999999999999999999986653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=131.47 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=94.7
Q ss_pred HHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc----
Q 018346 120 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM---- 193 (357)
Q Consensus 120 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~---- 193 (357)
.+++.+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++ ++++++++|+.+...
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444442 346789999999999999998875 357999999999999999999998887 479999999877421
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHH--HHhcccCceEEEEeccCCCC
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~~~~ 239 (357)
.++||+|+++++++ .......++.+ .++|+|||.+++.++.....
T Consensus 113 ~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~ 160 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTVKL 160 (187)
T ss_dssp TTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCC
T ss_pred cCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcccc
Confidence 36899999999865 34556677777 78899999999988766543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=139.30 Aligned_cols=115 Identities=13% Similarity=0.230 Sum_probs=96.0
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH---cCCC-CeEEEEeccCCCc-----
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LELQ-NVEIIVADISTFE----- 192 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~---~~~~-~v~~~~~d~~~~~----- 192 (357)
.......++.+|||+|||+|.++..++...|+.+|+|+|+++.+++.|++++.. +++. +++++++|+.+..
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhh
Confidence 344556678899999999999999999998889999999999999999999988 7774 6999999998862
Q ss_pred --c-ccCccEEEEcccccch------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 --M-EASYDRIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 --~-~~~fD~Ii~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. .++||+|++++++... .....+++.+.++|||||.+++..+..
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 2 3689999999887543 236788999999999999999976543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=139.36 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=95.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc--ccCccEEEEc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSI 203 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~fD~Ii~~ 203 (357)
+.++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|+++....+. .++.++++|+.+.+. .++||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 457889999999999999998877 345999999999999999999988776 379999999998765 3789999999
Q ss_pred ccccc----hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEH----MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.++++ .++...+++++.++|||||.+++.+++.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99976 5778899999999999999999998765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=142.26 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
+...++......++.+|||+|||+|.+++.++... |+.+|+|+|+|+.+++.|++|+...|+++++|.++|+.+++.+
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 33445666677788999999999999999999986 7789999999999999999999999987899999999987654
Q ss_pred cCccEEEEcccccch--------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+.||+|++++++... ..+..+++.+.++|+|||.+++.++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 678999999997542 225789999999999999999987754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=133.47 Aligned_cols=103 Identities=12% Similarity=0.277 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE-cccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS-IEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~-~~~~ 206 (357)
.++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.|+++. ++++++.+|+.+.+.+++||+|+| ..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSV 111 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchH
Confidence 467899999999999999999885 49999999999999998864 378999999988765678999995 4588
Q ss_pred cch---hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHM---KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+ ++...+++++.++|+|||.+++..+...
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 888 5678899999999999999999876554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=140.20 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=103.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 196 (357)
...+++.++..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++++...+++ +++++.+|+.+.+.+ .
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 256 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 256 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-C
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-C
Confidence 44566777777889999999999999999999999999999999 99999999999988775 699999999886544 3
Q ss_pred ccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+|++..+++++++ ...+++++.++|||||++++..+..+
T Consensus 257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 499999999999966 78999999999999999988776543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=138.71 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCC-HHHHHHH---HHHHHHcCCCCeEEEEeccCCCccc--cCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS-KTQKEFI---EEQCRVLELQNVEIIVADISTFEME--ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s-~~~l~~a---~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii 201 (357)
.++.+|||||||+|.++..+++..|+.+|+|+|+| +.+++.| ++++...+++++.|+++|+.+++.. +.+|.|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 46789999999999999999988888999999999 6666665 7777777877899999999987532 4455555
Q ss_pred Ecccccch-----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 202 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 202 ~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.+.... .+...+++++.++|||||.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~ 140 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTT 140 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEEC
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEe
Confidence 55443221 2335689999999999999999443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=140.25 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=92.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CCCCeEEEEeccCCCc----c---
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------ELQNVEIIVADISTFE----M--- 193 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~v~~~~~d~~~~~----~--- 193 (357)
.++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|+++.... +..+++++++|+.+.+ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 4779999999999999999988764 3347999999998864 3
Q ss_pred ccCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.++||+|+++.+++++ ++...+++++.++|||||.+++.+++.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 2489999999999887 456799999999999999999998865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-16 Score=133.17 Aligned_cols=108 Identities=15% Similarity=0.263 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-ccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~-~~fD~Ii~~~~~ 206 (357)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++...++++++++++|+.+. +.. ++||+|++++++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 57899999999999999888764 359999999999999999999998887899999998763 322 689999999996
Q ss_pred cchhhHHHHHHHHHH--hcccCceEEEEeccCCC
Q 018346 207 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~ 238 (357)
+ ......+++.+.+ +|+|||++++.+.....
T Consensus 133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~ 165 (202)
T 2fpo_A 133 R-RGLLEETINLLEDNGWLADEALIYVESEVENG 165 (202)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred C-CCcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence 5 4567778888876 49999999998775543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=137.51 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=114.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC---ccc--cCccEE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EME--ASYDRI 200 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~---~~~--~~fD~I 200 (357)
...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+...|+.++ +.. .+||+|
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEE
Confidence 3346689999999999999999987 77999999999999999876 2677888887765 222 459999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHhhcCCcEEEEe
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDH 280 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 280 (357)
+++.+++ .++...+++++.++|||||++++.+++........ -...|....+..- ..... .
T Consensus 121 ~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------~~~~~-~-- 181 (227)
T 3e8s_A 121 CANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGD---YQDGWREESFAGF------------AGDWQ-P-- 181 (227)
T ss_dssp EEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTC---CSCEEEEECCTTS------------SSCCC-C--
T ss_pred EECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccc---cccccchhhhhcc------------ccCcc-c--
Confidence 9999999 78889999999999999999999988765433210 0122222111000 00000 0
Q ss_pred EEecCccHHHHHHHHHHHHHhcHHHHHHHHHhcCC
Q 018346 281 WLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYG 315 (357)
Q Consensus 281 w~~~g~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~ 315 (357)
...+..+..+|.+.+.++|+++.+..++.++
T Consensus 182 ----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 212 (227)
T 3e8s_A 182 ----MPWYFRTLASWLNALDMAGLRLVSLQEPQHP 212 (227)
T ss_dssp ----EEEEECCHHHHHHHHHHTTEEEEEEECCCCT
T ss_pred ----ceEEEecHHHHHHHHHHcCCeEEEEecCCCC
Confidence 0112357888999999999998876554444
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=140.61 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=87.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC------CeEEEEeccCC------C--cc-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ------NVEIIVADIST------F--EM- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~------~v~~~~~d~~~------~--~~- 193 (357)
++.+|||||||+|..+..++... +.+|+|+|+|+.+++.|++++...+.. +++|.+.|+.. + +.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 47899999999998776666542 579999999999999999998776542 26788888722 1 11
Q ss_pred ccCccEEEEcccccch---hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 194 EASYDRIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.++||+|+|..++|++ .+...+++++.++|||||++++.+++..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 2689999999999875 4568999999999999999999988654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=130.75 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=85.1
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----ccccCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~I 200 (357)
+.+.++.+|||+|||+|..+..+++..++.+|+|+|+|+.+++.+.+.++.. +++.++.+|+... +..++||+|
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEE
Confidence 4566889999999999999999999876679999999999988777766543 3899999998763 233789999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++... -.....+++++.++|||||.+++...
T Consensus 131 ~~~~~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 131 YQDIAQ--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EECCCS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeccC--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 998422 23344568999999999999999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=142.01 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=99.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
..+++.+...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++++.+|+.+ +.+..|
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 249 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTA 249 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCE
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCC
Confidence 3455666667789999999999999999999999899999999 99999999999888875 89999999976 333459
Q ss_pred cEEEEcccccchhhH--HHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+++.+++++++. ..+++++.++|+|||++++..+
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999665 4899999999999999998776
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=133.43 Aligned_cols=111 Identities=19% Similarity=0.244 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~ 195 (357)
.+..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+ +++++.+|+.+. +..+
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCC
Confidence 4555667777788899999999999999999988 4799999999999999999987665 899999999873 3237
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|+++.+++++. +.+.++|+|||++++..++..
T Consensus 134 ~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 134 PYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred CccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCCC
Confidence 899999999999885 368899999999999877553
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=130.50 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c---cCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E---ASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~---~~fD~Ii~~ 203 (357)
++.+|||+|||+|.++..+++.. ..|+|+|+|+.+++.|++++...++ +++++++|+.+... . ++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 67899999999999999999884 4599999999999999999998888 89999999877321 1 279999999
Q ss_pred ccccchhhHHHHHHHHH--HhcccCceEEEEeccCCCC
Q 018346 204 EMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~~ 239 (357)
++++ ......++.+. ++|+|||.+++.++.....
T Consensus 118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 118 PPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred CCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence 9886 45556677776 9999999999988766543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=137.56 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH--CCCcEEEEEcCCHHHHHHHHHHHHHc---CCC-C---------
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVL---ELQ-N--------- 180 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~--~p~~~v~~vD~s~~~l~~a~~~~~~~---~~~-~--------- 180 (357)
.++..+++.+...++.+|||+|||+|.++..++.. .++.+|+|+|+|+.+++.|++++... ++. +
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 45566666554446789999999999999999988 66789999999999999999887755 332 1
Q ss_pred ----------------eE-------------EEEeccCCCcc-----c-cCccEEEEcccccch---------hhHHHHH
Q 018346 181 ----------------VE-------------IIVADISTFEM-----E-ASYDRIYSIEMFEHM---------KNYQNLL 216 (357)
Q Consensus 181 ----------------v~-------------~~~~d~~~~~~-----~-~~fD~Ii~~~~~~~~---------~~~~~~l 216 (357)
++ |.++|+.+... . .+||+|++++++.+. ..+..++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 66 99999987431 3 489999999987654 3456899
Q ss_pred HHHHHhcccCceEEEE
Q 018346 217 KKISKWMKEDTLLFVH 232 (357)
Q Consensus 217 ~~~~~~LkpgG~l~~~ 232 (357)
+++.++|+|||++++.
T Consensus 198 ~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 198 RSLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHHSCTTCEEEEE
T ss_pred HHHHHhcCCCcEEEEe
Confidence 9999999999999984
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-17 Score=146.15 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=92.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++++++++|+.+.+..++||+|+++++++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 6789999999999999999987 68999999999999999999999988 58999999998876457899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEe
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..+....+.++.++|+|||.+++..
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHH
Confidence 98777667788899999999977654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=140.91 Aligned_cols=109 Identities=13% Similarity=0.210 Sum_probs=95.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCC--ccccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF--EMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~--~~~~~fD~Ii~~~ 204 (357)
.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ ++|+++.+|+.+. +.+++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 3568999999999999999999999999999999 9999999999887776 4899999999885 3447899999999
Q ss_pred cccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 205 MFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 205 ~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++|++++ ...+++++.+.|||||++++..+..+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 9998854 46889999999999999999776543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=131.70 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADIST 190 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~ 190 (357)
...++..++...+..++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.|++++...++. +++++.+|+.+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH
Confidence 345666666665544556999999999999999999874 789999999999999999999998875 79999999876
Q ss_pred Cc--c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 191 FE--M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 191 ~~--~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. . .++||+|++.... .++..+++.+.++|||||++++...
T Consensus 121 ~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 42 2 3689999998654 3567789999999999999998544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=125.13 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
....+++.+...++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.+++++...++++++++.+|+.+ +.+ +
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~ 99 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKL 99 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCC
Confidence 344455666677889999999999999999997 588999999999999999999999888789999999887 333 6
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+++.+ .+...+++.+.++ |||.+++..+..
T Consensus 100 ~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 100 EFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 8999999988 5678889999888 999999987643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=134.05 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 196 (357)
..++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|+++++..++++ ++++.+|+.+....++
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN 162 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence 35666777888999999999999999999998 678999999999999999999999988864 9999999987533477
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++. ++...+++++.++|+|||.+++..++.
T Consensus 163 ~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 163 VDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp EEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 99999954 355678999999999999999987654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=132.36 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++... .++++++.+|+.+++.+ ++||+|+++.++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 5778999999999999999998843 3899999999999999988764 24899999999887654 789999999988
Q ss_pred cchh---------------hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMK---------------NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++. +...+++++.++|||||.+++.+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 6653 678899999999999999999888654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=139.27 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=100.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 196 (357)
...+++..+..+ .+|||+|||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ ++++++.+|+.+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSN 233 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSS
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCC
Confidence 455666666666 8999999999999999999999999999999 9999999999877665 489999999987 44467
Q ss_pred ccEEEEcccccchhhHH--HHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|++..++|++++.. .+++++.+.|+|||++++..+..+
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 99999999999886544 899999999999999999876543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=134.60 Aligned_cols=106 Identities=16% Similarity=0.271 Sum_probs=92.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc------cCccEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME------ASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~------~~fD~I 200 (357)
+.++.+|||+|||+|.++..+++..+ +|+|+|+|+.+++.++++.. ..+++++++|+.+.+.. ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEE
Confidence 45778999999999999999999854 89999999999999998762 23899999999885432 249999
Q ss_pred EEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++.++++++ +...+++++.++|||||++++..+...
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999997 889999999999999999988877654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=131.28 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--c-----cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-----ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~fD~ 199 (357)
++.+|||||||+|..+..+++..+ +.+|+++|+|+.+++.|++++...++. +++++.+|+.+... . ++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 578999999999999999998764 789999999999999999999998885 69999999865311 1 57999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++....++......++..+ ++|||||++++.....
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99999888777667788888 9999999999876553
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=133.72 Aligned_cols=108 Identities=15% Similarity=0.322 Sum_probs=87.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH------cCCCCeEEEEeccCC-Cc--c-ccCc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV------LELQNVEIIVADIST-FE--M-EASY 197 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~------~~~~~v~~~~~d~~~-~~--~-~~~f 197 (357)
.++.+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|++++.. .+.+|+.++++|+.+ ++ + .++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 466799999999999999999999999999999999999999988764 355689999999987 43 3 3789
Q ss_pred cEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|.|+++.+-.+... ...+++++.++|||||.+++.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99998765433211 147999999999999999997653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=137.09 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=93.7
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEEeccCCCccccCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEMEASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~~v~~~~~d~~~~~~~~~f 197 (357)
.++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|++++... |.++++++.+|+.+....++|
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~f 180 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 180 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCE
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCc
Confidence 4566677788999999999999999999987 67889999999999999999999887 777899999999873323689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++ ++++..+++++.++|||||++++.+++.
T Consensus 181 D~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 181 DAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp EEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred cEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 999993 4466789999999999999999987654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=142.26 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=97.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+++.+...++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++++...++ +++++.+|+.+.. .++||+|
T Consensus 188 ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~I 265 (343)
T 2pjd_A 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KGRFDMI 265 (343)
T ss_dssp HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CSCEEEE
T ss_pred HHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cCCeeEE
Confidence 4455544556799999999999999999998878999999999999999999998887 5788999987754 4789999
Q ss_pred EEcccccc-----hhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEH-----MKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++++++++ ..+...+++++.++|||||.+++....
T Consensus 266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999985 356788999999999999999997654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=133.50 Aligned_cols=114 Identities=22% Similarity=0.255 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Ccccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~ 195 (357)
....+++.+...++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.|+++....+++++++..+|+.. ++...
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555666777889999999999999999999875 8999999999999999999999888789999999733 22224
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|+++.+++++.+ .+.+.|+|||++++.++...
T Consensus 158 ~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred CccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence 5999999999988753 67889999999999887654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=133.60 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=90.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc---ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.|++++...+++ +++++.+|+.+... .++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 678999999999999999998777899999999999999999999999885 89999999987543 37899999876
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. ..+..+++.+.++|||||++++...
T Consensus 151 ~~---~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 151 AK---AQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TS---SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred cH---HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 54 4567899999999999999988543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-16 Score=137.55 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~~ 204 (357)
.+|.+|||||||+|..+..+++.. ..+|++||+|+.+++.|+++....+. ++.++.+|+.+.. .+ ++||.|+...
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEEee
Confidence 468899999999999999998765 36899999999999999999887776 7899999876542 22 6799997643
Q ss_pred -----cccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 205 -----MFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 205 -----~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..++..+...+++++.++|||||++++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 4566788999999999999999998763
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=149.77 Aligned_cols=118 Identities=23% Similarity=0.236 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHc------CCCCeEEEEeccCC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVL------ELQNVEIIVADIST 190 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~ 190 (357)
++.+++.+...++.+|||||||+|.++..+++.. |..+|+|+|+|+.+++.|++++... +.++++|+++|+.+
T Consensus 710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 3334444444478899999999999999999886 4479999999999999999876542 45689999999999
Q ss_pred Cccc-cCccEEEEcccccchhhHH--HHHHHHHHhcccCceEEEEeccC
Q 018346 191 FEME-ASYDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 191 ~~~~-~~fD~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++.. ++||+|++..+++|+++.. .+++++.++|||| .+++.+++.
T Consensus 790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 8765 7899999999999997644 5899999999999 888887765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=132.57 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----CccccCc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEMEASY 197 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~f 197 (357)
++.+.+.++.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.+++++... +++.++.+|+.+ .+..++|
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccE
Confidence 4445567889999999999999999999876689999999999999999987655 589999999987 4444689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+.... .......+++++.++|||||.+++.
T Consensus 145 D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIYEDVA--QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEecC--ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99994321 1122377899999999999999997
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=136.12 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=85.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCC--------------------------
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL-------------------------- 178 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~-------------------------- 178 (357)
+..++.+|||||||+|..+..++.. ++ +|+|+|+|+.+++.|+++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 3457789999999999888776655 44 799999999999999987654310
Q ss_pred ---CCeE-EEEeccCCC-cc----ccCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEec
Q 018346 179 ---QNVE-IIVADISTF-EM----EASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 ---~~v~-~~~~d~~~~-~~----~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.++. ++++|+.+. +. .++||+|+++.+++++ +++..+++++.++|||||.+++...
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0244 899999873 21 2689999999999986 5678899999999999999999864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=138.27 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=100.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~f 197 (357)
..+++.++..++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++. +++++.+|+.+ +.+..|
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 250 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKA 250 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCE
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCc
Confidence 3455666777889999999999999999999999899999999 99999999999888875 89999999976 233459
Q ss_pred cEEEEcccccchhhH--HHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++..+++++++. ..+++++.++|+|||++++..+.
T Consensus 251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999999998655 58999999999999999998765
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=129.45 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=91.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+.+++++..+|+.+.. +++||+|+++.++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-CCCceEEEECCcH
Confidence 346789999999999999998875 45699999999999999999999988866999999998754 4789999999888
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++ ...+++++.++|+|||.+++..+..
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCc
Confidence 65 4788999999999999999976543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=134.21 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=94.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
+.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++|++.++++++.++++|+.+.+..++||+|+++++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 56788999999999999999999876779999999999999999999999988899999999887323689999999886
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+...++..+.+.|+|||++++.+...
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 45668889999999999999987755
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-16 Score=137.61 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCC--CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-
Q 018346 116 AMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF- 191 (357)
Q Consensus 116 ~~l~~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~- 191 (357)
.++..++..+.. .++.+|||+|||+|.++..++...|+.+|+|+|+|+.+++.|++++...+++ +++++++|+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 344445443332 2567999999999999999998877789999999999999999999998885 599999997652
Q ss_pred --ccc----cCccEEEEcccccchh-h--------------HHHHHHHHHHhcccCceEEEE
Q 018346 192 --EME----ASYDRIYSIEMFEHMK-N--------------YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 --~~~----~~fD~Ii~~~~~~~~~-~--------------~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+.+ ++||+|++++++++.. + ...++..+.++|||||.+.+.
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 222 4799999999887543 1 124567788899999987664
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-16 Score=148.69 Aligned_cols=122 Identities=11% Similarity=0.146 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe--EEEEe
Q 018346 109 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV--EIIVA 186 (357)
Q Consensus 109 ~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v--~~~~~ 186 (357)
.+........+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +.+.. .+...
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~ 160 (416)
T 4e2x_A 87 VMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKA 160 (416)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechh
Confidence 455666677788888888888899999999999999999987 67999999999999988775 33211 12223
Q ss_pred ccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 187 DISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 187 d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+...++++ ++||+|+++.+++|++++..+++++.++|||||++++..++.
T Consensus 161 ~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 161 TADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp HHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 33333333 789999999999999999999999999999999999987754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.2e-15 Score=124.82 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=89.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEc-c
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-E 204 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~-~ 204 (357)
+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++. +++.++.+|+.+.+.+ ++||+|+++ .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 357889999999999999999987 679999999999999998865 2689999999886654 789999998 6
Q ss_pred cccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++++ ++...+++.+.++|+|||.+++..+..
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 78777 566889999999999999999977654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=128.11 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=89.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc------cCccEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME------ASYDRI 200 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~------~~fD~I 200 (357)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|++++...+++ +++++.+|+.+.... ++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 678999999999999999999887 789999999999999999999998885 699999998764221 469999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++..+. +....+++.+.++|+|||++++..+.
T Consensus 138 ~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDADK---QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSCG---GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998764 35678999999999999998886543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-15 Score=131.19 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=97.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEEeccCCCccc-c
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~-~~~~v~~~~~d~~~~~~~-~ 195 (357)
..++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|++++... +.+++++..+|+.+.+.+ +
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 34666677888999999999999999999998 57789999999999999999999887 766899999999886444 6
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+++. ++...+++++.++|+|||.+++..++.
T Consensus 166 ~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 166 AYDGVALDL-----MEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CcCEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 899999853 455688999999999999999987654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-15 Score=124.87 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=95.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~ 196 (357)
..+++.+...++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++...+. +++.+..+|+.+.... ++
T Consensus 23 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 345555677788999999999999999999874 7999999999999999999998887 6899999998762122 58
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.++++ ...+++.+.++|+|||.+++..+..
T Consensus 101 ~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 101 IDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp EEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred CCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCc
Confidence 999999988764 4789999999999999999977643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=135.61 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=91.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.|++++..++++ +++++++|+.+....++||+|+++++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 46889999999999999999998533 7999999999999999999999886 599999999987656789999998774
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. ...+++.+.++|||||++++.+..+
T Consensus 203 ~----~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 203 R----THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp S----GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred h----HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 3 3567888999999999999987764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-15 Score=138.81 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=96.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~f 197 (357)
..+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+++.+++|
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555555567899999999999999999986 356999999996 88999999998887 5899999999987655789
Q ss_pred cEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++..+++++ +.....+..+.++|||||.+++...+
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD 157 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 999999988776 45677888899999999999876544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=134.50 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=95.7
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----ccCcc
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYD 198 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD 198 (357)
+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.+++++...|+++++++.+|+.+++. .++||
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD 158 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence 45678899999999999999999998766 7999999999999999999999998899999999887543 36899
Q ss_pred EEEEcccccch------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+++++.... .....+++.+.++|||||.+++++.+.
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 99999765432 345789999999999999999987654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=136.70 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=91.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|++|+..++++ +++++++|+.+... .++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 46789999999999999999986 569999999999999999999999885 49999999987532 2579999
Q ss_pred EEccccc----------chhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFE----------HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++++.. ...++..+++.+.++|+|||.+++...+..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 9988742 235678899999999999999888776544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=129.29 Aligned_cols=105 Identities=11% Similarity=0.187 Sum_probs=90.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc----ccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----EASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~----~~~fD~Ii~ 202 (357)
++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|++++...+++ +|+++.+|+.+... .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 678999999999999999999887 789999999999999999999998885 89999999876321 148999999
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
... ..+...+++.+.++|||||++++.....
T Consensus 143 d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 143 DAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp CSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred CCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 764 3466789999999999999999865543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=128.63 Aligned_cols=104 Identities=23% Similarity=0.285 Sum_probs=90.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCc---
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFE--- 192 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~--- 192 (357)
.+.++.+|||+|||+|..+..+++.. |..+|+++|+|+.+++.|+++....+ .++++++.+|+.+..
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 35678999999999999999999885 45799999999999999999998887 468999999998753
Q ss_pred -cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 193 -ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 193 -~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. ++||+|++..+++++ ++.+.+.|||||++++..+.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 33 789999999998765 47788999999999998775
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=135.28 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=92.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASY 197 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~f 197 (357)
.+.+.....++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+++.+ ++|
T Consensus 55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444567889999999999999999987 245999999997 99999999999887 5899999999987665 789
Q ss_pred cEEEEccc---ccchhhHHHHHHHHHHhcccCceEE
Q 018346 198 DRIYSIEM---FEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 198 D~Ii~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
|+|+++.+ +.+......++..+.++|||||.++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 99999873 4455678889999999999999987
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=138.47 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=94.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD 198 (357)
.+.......++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|++++..+++. +++++++|+.+++.+++||
T Consensus 54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 131 (376)
T 3r0q_C 54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVD 131 (376)
T ss_dssp HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEE
T ss_pred HHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcce
Confidence 34444556678999999999999999999873 3499999999 9999999999998884 6999999999876668899
Q ss_pred EEEEcccccch---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHM---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+++.+.+.+ .....+++.+.++|||||.+++...
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99997755554 4578899999999999999977544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=131.04 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=87.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. .+ ++.+|+.+++.+ ++||+|++..++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVL 125 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhh
Confidence 6789999999999999999987 6799999999999999988753 12 789999887654 7899999988776
Q ss_pred ch-hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HM-KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++ ++...+++++.++|||||.+++.+++.
T Consensus 126 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 126 SYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 66 779999999999999999999988764
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=129.31 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---c-ccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---M-EASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---~-~~~f 197 (357)
+.+.+++|.+|||+|||+|..+..+++.. |..+|+|+|+|+.+++.+++++... +|+..+.+|..... . .+++
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceE
Confidence 34678899999999999999999999874 7889999999999999998887654 38999999987632 1 2679
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|++..+ +..+...++.++.+.|||||.+++...
T Consensus 149 DvVf~d~~--~~~~~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 149 DGLYADVA--QPEQAAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp EEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEecc--CChhHHHHHHHHHHhccCCCEEEEEEe
Confidence 99987644 445678899999999999999998653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=127.80 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--c-----cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--E-----ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~fD~ 199 (357)
++.+|||+|||+|..+..+++.+| +.+|+++|+|+.+++.|++++...++. +++++++|+.+... . ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 577999999999999999999886 789999999999999999999998885 69999999866421 1 57999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|++.... .++..+++.+.++|||||++++....
T Consensus 144 v~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDADK---ANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCCH---HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9987653 45778999999999999999986553
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.4e-15 Score=130.02 Aligned_cols=152 Identities=11% Similarity=0.084 Sum_probs=109.7
Q ss_pred hHHHHHhhcCCCCcccc---------ccCCCCCCHHHHHHHHHHHHHHHcCC-CCCCEEEEECCcc--cHHHHHHH-HHC
Q 018346 85 TSFFKLVLGKYFKYSCC---------YFSDASKTLEDAEKAMLELYCERSRL-EDGHTVLDVGCGW--GSLSLYIA-QKY 151 (357)
Q Consensus 85 ~~~~~~~l~~~~~y~~~---------~f~~~~~~l~~~~~~~l~~l~~~~~~-~~~~~vLDiGcG~--G~~~~~la-~~~ 151 (357)
.++|..+|+-.-+|... .+ +....+....+..+...++.+.. ....+|||||||. +..+..++ +..
T Consensus 25 aR~yd~~LgGk~n~~~Dr~~~~~~~~~~-P~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~ 103 (277)
T 3giw_A 25 ARIYDYIIGGKDYYPADKEAGDAMSREW-PALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVA 103 (277)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHC
T ss_pred chhheeecCCccCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHC
Confidence 45677777766555321 11 22223344455666666666542 2446899999997 33444444 456
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------ccCcc-----EEEEcccccchhh---HHHHH
Q 018346 152 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------EASYD-----RIYSIEMFEHMKN---YQNLL 216 (357)
Q Consensus 152 p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD-----~Ii~~~~~~~~~~---~~~~l 216 (357)
|+++|+++|.|+.|++.|++++...+..+++|+++|+.+... ...|| .|+++.++||+++ +..++
T Consensus 104 P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l 183 (277)
T 3giw_A 104 PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIV 183 (277)
T ss_dssp TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHH
Confidence 899999999999999999998765433479999999987521 14466 6899999999966 57899
Q ss_pred HHHHHhcccCceEEEEeccCC
Q 018346 217 KKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 217 ~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++.+.|+|||+|++...+..
T Consensus 184 ~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 184 RRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp HHHHTTSCTTCEEEEEEECCT
T ss_pred HHHHHhCCCCcEEEEEeccCC
Confidence 999999999999999988765
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=128.87 Aligned_cols=104 Identities=16% Similarity=0.303 Sum_probs=91.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-cc---ccCccEEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EM---EASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~~---~~~fD~Ii~ 202 (357)
.++.+|||+|||+|..+..+++..|+.+|+++|+|+.+++.|++++...++. +++++.+|+.+. +. .++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3678999999999999999999988899999999999999999999988874 799999999874 21 367999999
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+.+.+ ++..+++.+.++|+|||++++...
T Consensus 133 ~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAKG---QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGGS---CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCHH---HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 88764 668899999999999999999754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=128.79 Aligned_cols=108 Identities=11% Similarity=0.118 Sum_probs=88.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC---cc-ccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EM-EASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~~~f 197 (357)
+.+.+.++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.+.++++.. ++++++.+|+.+. +. .++|
T Consensus 71 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp SCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCE
T ss_pred heecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcE
Confidence 34556788999999999999999999885 6689999999999988888887765 4899999999873 22 2689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+++.+ .......++.++.++|||||.+++...
T Consensus 149 D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 149 DVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp EEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 99999776 233345678889999999999999654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-15 Score=130.56 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++..++++ +++..+|+.+....++||+|+++.+.
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcH
Confidence 457889999999999999999987 449999999999999999999998875 99999998763223689999998766
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++ ...+++.+.++|+|||++++..+
T Consensus 195 ~~---~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 195 EL---HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp HH---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HH---HHHHHHHHHHHcCCCCEEEEEee
Confidence 53 46889999999999999999755
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=132.53 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=90.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---------------------------
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--------------------------- 178 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~--------------------------- 178 (357)
+..++.+|||+|||+|.++..++...+ .+|+|+|+|+.+++.++++....+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 445678999999999999999887742 4999999999999999988754321
Q ss_pred --CCe-EEEEeccCCCcc--c---cCccEEEEccccc----chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 179 --QNV-EIIVADISTFEM--E---ASYDRIYSIEMFE----HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 179 --~~v-~~~~~d~~~~~~--~---~~fD~Ii~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.++ .++.+|+.+..+ + ++||+|+++.+++ +++++..+++++.++|||||++++..+
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 027 999999987532 3 6799999999999 667889999999999999999999874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=128.37 Aligned_cols=107 Identities=19% Similarity=0.367 Sum_probs=87.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--------CCCCeEEEEeccCC-Cc--cc-c
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------ELQNVEIIVADIST-FE--ME-A 195 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--------~~~~v~~~~~d~~~-~~--~~-~ 195 (357)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|++++... +++++.++.+|+.+ ++ ++ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4678999999999999999999988889999999999999999998876 77799999999987 33 22 6
Q ss_pred CccEEEEcccccchhh--------HHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++|.|+...+-.+... ...+++.+.++|+|||.+++.+.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 7899886543222111 15799999999999999999543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=130.73 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=97.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHc-C--CCCeEEEEeccCCCcc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-E--LQNVEIIVADISTFEM 193 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~-~--~~~v~~~~~d~~~~~~ 193 (357)
...++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|++++... + .++++++.+|+.+.+.
T Consensus 88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 345666777888999999999999999999986 46789999999999999999999887 5 4589999999988654
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ ++||+|+++. +++..+++++.++|+|||.+++.+++.
T Consensus 168 ~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 168 PDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred CCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 3 6899999954 355688999999999999999988764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=136.20 Aligned_cols=103 Identities=27% Similarity=0.382 Sum_probs=89.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++++ +++++.+|+.+++.+ ++||+|+++.+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 46789999999999999999987 45699999999 4999999999998885 599999999998665 88999999876
Q ss_pred ccch---hhHHHHHHHHHHhcccCceEEEE
Q 018346 206 FEHM---KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+ .....++..+.++|||||.++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 4433 77889999999999999998743
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=130.83 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 196 (357)
..++..+.+.++.+|||+|||+|.++..+++. .|+.+|+++|+|+.+++.|++++...++ ++++++.+|+.+....++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 35666677888999999999999999999998 5788999999999999999999998887 589999999987532367
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++. +++..+++.+.++|+|||.+++.+++.
T Consensus 182 ~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 182 VDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp EEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 99999964 355688999999999999999988643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=131.65 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
...+..++... ++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.|++++...++. +|+++.+|+.+..
T Consensus 49 ~~~l~~l~~~~---~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 49 AQFMQMLIRLT---RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125 (242)
T ss_dssp HHHHHHHHHHH---TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHhhc---CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 33444444332 567999999999999999999875 789999999999999999999999885 8999999987642
Q ss_pred c-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. .++||+|++... ..++..+++.+.++|+|||++++......
T Consensus 126 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 126 HSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp HHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred HHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 2 268999999876 34667899999999999999999765543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-15 Score=127.83 Aligned_cols=107 Identities=20% Similarity=0.374 Sum_probs=90.7
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC--Cccc-cCc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME-ASY 197 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~--~~~~-~~f 197 (357)
+++.+. .++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.++++. .++..+|+.+ .+.+ ++|
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCE
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCcc
Confidence 444444 57789999999999999999987 589999999999998887642 3788899876 3333 689
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|+++.+++|+++...+++++.++|+|||.+++..++..
T Consensus 95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999999999999999999999999999999887654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=127.28 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-c
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-E 192 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~ 192 (357)
.++..++.. .++.+|||||||+|..+..+++.+| +.+|+++|+|+.+++.|++++...++. +|+++.+|+.+. +
T Consensus 69 ~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 145 (247)
T 1sui_A 69 QFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 145 (247)
T ss_dssp HHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence 344444443 3567999999999999999999987 789999999999999999999998884 899999998763 2
Q ss_pred -c------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 -M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 -~------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .++||+|++.... .++..+++.+.++|||||++++...
T Consensus 146 ~l~~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 146 EMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp HHHHSGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred HHHhccCCCCCEEEEEEcCch---HHHHHHHHHHHHhCCCCeEEEEecC
Confidence 1 3679999998653 4678899999999999999988643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=134.23 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-----------------CC-------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------------EL------------- 178 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-----------------~~------------- 178 (357)
++.+|||||||+|..+..++. .++.+|+|+|+|+.+++.|++++... +.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 678999999999995544443 33679999999999999998865321 10
Q ss_pred CCeEEEEeccCC-Ccc------ccCccEEEEcccccc----hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 179 QNVEIIVADIST-FEM------EASYDRIYSIEMFEH----MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 179 ~~v~~~~~d~~~-~~~------~~~fD~Ii~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+.++.+|+.+ .++ +++||+|+++.++++ ++++..+++++.++|||||++++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 015678889887 432 146999999999999 6789999999999999999999964
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=135.95 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=93.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 196 (357)
...+++..+..++.+|||||||+|..+..+++.+|+.+++++|+ +.++. +++....+. ++|+++.+|+.+ +.+ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~ 247 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-H 247 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCC-C
Confidence 34567777778889999999999999999999999999999999 44444 333222333 379999999974 333 8
Q ss_pred ccEEEEcccccchhhH--HHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|++..++|++++. ..+++++.++|||||++++..+..+
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999999776 6999999999999999999876544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=123.47 Aligned_cols=110 Identities=24% Similarity=0.175 Sum_probs=90.9
Q ss_pred HHHHcC--CCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEeccCCCc
Q 018346 121 YCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFE 192 (357)
Q Consensus 121 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~~~ 192 (357)
+++.+. +.++.+|||+|||+|..+..+++.. |..+|+++|+|+.+++.+++++...+ .++++++.+|+....
T Consensus 67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 444443 5678999999999999999999875 55799999999999999999988765 358999999987654
Q ss_pred cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 193 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.. ++||+|++..+++++. +.+.++|||||++++...+.
T Consensus 147 ~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 147 AEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp GGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESCT
T ss_pred ccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 33 6899999999887653 57889999999999987654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=124.86 Aligned_cols=105 Identities=12% Similarity=0.035 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++.+|||||||+|.+++.+++..|..+|+++|+|+.+++.|++|+..+|+. +|++..+|..+...+ .+||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4678999999999999999999888789999999999999999999999985 799999998653222 36999987654
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-. .....+++...+.|+|+|+++++..
T Consensus 94 Gg--~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 94 GG--RLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp CH--HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred Ch--HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 22 3367889999999999999988655
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=132.50 Aligned_cols=114 Identities=16% Similarity=0.083 Sum_probs=94.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRI 200 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I 200 (357)
..+...++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++...|+++++++++|+.+++. .++||+|
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~I 191 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 191 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEE
Confidence 344677889999999999999999998864 47999999999999999999999998889999999987653 3689999
Q ss_pred EEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++.+.... + ....+++.+.++|||||++++.+.+.
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 997663211 1 12589999999999999999976543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=125.33 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=87.0
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~f 197 (357)
+.+.+.++.+|||+|||+|.++..+++.. |+.+|+|+|+|+.+++.++++++.. ++++++.+|+.+.. ..++|
T Consensus 67 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCc
Confidence 33446688999999999999999999875 5689999999999999999888655 48999999998732 23679
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+++.+ .......++.++.++|||||.+++..
T Consensus 145 D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 145 DVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999876 22223455999999999999999973
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=127.15 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC-CHHHHHHHHHHH-----HHcCCC-----CeEEEE
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN-SKTQKEFIEEQC-----RVLELQ-----NVEIIV 185 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~-s~~~l~~a~~~~-----~~~~~~-----~v~~~~ 185 (357)
+.+.+.......++.+|||+|||+|.+++.+++.. ..+|+++|+ |+.+++.|++++ ...++. ++++..
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~ 145 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP 145 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence 33444444444577899999999999999998763 349999999 899999999999 555543 688887
Q ss_pred eccCCCc-------cccCccEEEEcccccchhhHHHHHHHHHHhcc---c--CceEEEEec
Q 018346 186 ADISTFE-------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMK---E--DTLLFVHHF 234 (357)
Q Consensus 186 ~d~~~~~-------~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~~ 234 (357)
.|+.+.. ..++||+|++..++++.++...+++.+.++|+ | ||.+++...
T Consensus 146 ~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 146 YRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp CCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred ecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 7765421 13689999999999999999999999999999 9 999877543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=123.81 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=95.5
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCc-cccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE-MEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~-~~~~ 196 (357)
..++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....++ +++++..+|+.+.. ..++
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 35566677778899999999999999999988 78999999999999999999988887 58999999998854 3368
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++.+ ++..+++.+.++|+|||.+++..++.
T Consensus 159 ~D~v~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 159 FHAAFVDVR-----EPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp BSEEEECSS-----CGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred ccEEEECCc-----CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 999998543 55678999999999999999988753
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=130.39 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
..+++..+..+..+|+|||||+|..+..+++++|+.+++..|. |.+++.|+++....+.++|+++.+|+.+.+. ..+|
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~-~~~D 246 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL-PEAD 246 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC-CCCS
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC-CCce
Confidence 4455556667778999999999999999999999999999998 8899999988766566799999999987543 4689
Q ss_pred EEEEcccccchhhH--HHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMKNY--QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|++..++|++++. .++++++++.|+|||++++.....
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 99999999999654 678999999999999999977643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=121.02 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=79.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. .++++++++|+.+....++||+|+++++++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 35679999999999999999987 4 99999999999876 237899999998743337899999999998
Q ss_pred chhh---------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 208 HMKN---------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 208 ~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+.++ ...+++++.+.| |||.+++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 6533 356788888888 999999977544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=123.99 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=84.2
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEH 208 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~ 208 (357)
+.+|||+|||+|.++..++.. +|+|+|+.+++.++++ +++++.+|+.+++.+ ++||+|++..++++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 789999999999999887642 9999999999988875 678999999887655 68999999999999
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++++..+++++.++|+|||.+++..+..
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999999999999999999988754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=123.04 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=89.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++.+|||||||+|.+++.+++..|..+|+++|+|+.+++.|++|+..+|+. +|++..+|..+...+ ++||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4678999999999999999999877779999999999999999999999985 799999999875544 37999887554
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-. .....++....+.|+++|.++++..
T Consensus 100 Gg--~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 100 GG--RLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ch--HHHHHHHHHHHHHhCcCCEEEEECC
Confidence 33 3467788888999999999888764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=124.21 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=90.7
Q ss_pred HHHHHc--CCCCCCEEEEECCcccHHHHHHHHHCC------CcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEEe
Q 018346 120 LYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYS------NCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVA 186 (357)
Q Consensus 120 ~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~p------~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~ 186 (357)
.+++.+ .+.++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.|++++...+ .++++++.+
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 152 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 152 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence 344444 356788999999999999999998653 2599999999999999999988765 458999999
Q ss_pred ccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 187 DISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 187 d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|..+.... ++||+|++..+++++. +.+.+.|||||++++....
T Consensus 153 d~~~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 153 DGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CcccCCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 98873223 6899999999988764 6788999999999998764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=133.37 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=94.0
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 118 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
...+++.+. ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ .++++++.+|+.+ +.+.
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC-
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC-
Confidence 345666664 56778999999999999999999999999999999 888877654 2479999999987 4444
Q ss_pred ccEEEEcccccchhhHH--HHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|++..++|++++.. .+++++.++|||||++++..+..+
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 99999999999997776 999999999999999999876543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=122.63 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=87.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC-cc-ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF-EM-EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~-~~-~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|..+..+++..| +.+|+++|+|+.+++.|++++...++. +++++.+|..+. +. ++ ||+|+++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 567999999999999999998877 789999999999999999999888774 699999998763 22 25 99999985
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. ..++..+++.+.++|||||++++...
T Consensus 135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 4 34678899999999999999988654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=119.13 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=87.5
Q ss_pred HHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----
Q 018346 119 ELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 192 (357)
Q Consensus 119 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---- 192 (357)
..+++... ..++.+|||+|||+|.++..+++.+ |+.+++++|+|+ +++. ++++++.+|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhh
Confidence 34445444 5678899999999999999999884 678999999999 6432 48999999998864
Q ss_pred ----cc-cCccEEEEcccccchhhH-----------HHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 ----ME-ASYDRIYSIEMFEHMKNY-----------QNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ----~~-~~fD~Ii~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.+ ++||+|+++.++++.... ..+++.+.++|+|||.+++..+...
T Consensus 80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 33 689999999988776443 6899999999999999999877543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=123.96 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=89.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcccc-CccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA-SYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~-~fD~Ii~~~~ 205 (357)
.++.+|||||||+|.+++.+++..|..+|+++|+|+.+++.|++|+..+|+. +|++..+|..+...++ +||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4778999999999999999999877779999999999999999999999985 6999999998755443 5999887544
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-. .....+++...+.|+++|+++++..
T Consensus 100 Gg--~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 100 GG--TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp CH--HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred ch--HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 32 3467788899999999999988764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=130.04 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
..++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+++. +++++.+|+.+++.+ ++||+|++..
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeC
Confidence 346789999999999999999986 34599999999 5899999999988874 799999999987665 7899999986
Q ss_pred cccc---hhhHHHHHHHHHHhcccCceEEE
Q 018346 205 MFEH---MKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 205 ~~~~---~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+.+. ......++..+.++|||||.++.
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred chhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5443 35678899999999999999874
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=140.66 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=92.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c-ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~Ii~~~ 204 (357)
..+.+|||||||.|.++..||+. |++|+|+|+|+.+|+.|+..+...|..+|+|.+++++++. . +++||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35789999999999999999988 8999999999999999999998877448999999998762 2 26899999999
Q ss_pred cccchhhHHHH--HHHHHHhcccCceEEEEeccCCCC
Q 018346 205 MFEHMKNYQNL--LKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 205 ~~~~~~~~~~~--l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+++|++++..+ +..+.+.|+++|..++..+.....
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 99999776543 445777899999888876655443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-14 Score=122.73 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE- 192 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~- 192 (357)
..+..++.. .++.+|||||||+|..+..+++..| +.+|+++|+|+.+++.|++++...|+. +++++.+|..+..
T Consensus 60 ~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 60 QLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 344444443 3567999999999999999999986 789999999999999999999998885 7999999987631
Q ss_pred -c------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 -M------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 -~------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. .++||+|++.... .++..+++.+.++|+|||++++...
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 1 3679999987543 4678899999999999999988644
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=134.26 Aligned_cols=132 Identities=18% Similarity=0.273 Sum_probs=101.5
Q ss_pred cCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHH
Q 018346 93 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 172 (357)
Q Consensus 93 ~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~ 172 (357)
+-.+.++++.|...+ ......+++.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|
T Consensus 253 g~~~~~~~~~f~q~n---~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n 327 (433)
T 1uwv_A 253 GLRLTFSPRDFIQVN---AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQN 327 (433)
T ss_dssp TEEEECCSSSCCCSB---HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECcccccccC---HHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH
Confidence 334445555555322 1223456667777777777889999999999999999987 68999999999999999999
Q ss_pred HHHcCCCCeEEEEeccCCC----ccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 173 CRVLELQNVEIIVADISTF----EME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 173 ~~~~~~~~v~~~~~d~~~~----~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..+++++++|+++|+.+. +.. ++||+|+++++..... .+++.+.+ ++|++.+++++
T Consensus 328 ~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~---~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 328 ARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA---GVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp HHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH---HHHHHHHH-HCCSEEEEEES
T ss_pred HHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHH---HHHHHHHh-cCCCeEEEEEC
Confidence 9999988999999999873 222 5799999999987663 45555543 78999888854
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=120.09 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=82.9
Q ss_pred HHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----
Q 018346 120 LYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 192 (357)
Q Consensus 120 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---- 192 (357)
.+.+... +.++.+|||+|||+|.++..+++..| +.+|+|+|+|+.+ ..++++++++|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~ 80 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNI 80 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhh
Confidence 3444444 46788999999999999999999987 6899999999842 2347999999998765
Q ss_pred ---------------------cc-cCccEEEEcccccch----hhH-------HHHHHHHHHhcccCceEEEEeccC
Q 018346 193 ---------------------ME-ASYDRIYSIEMFEHM----KNY-------QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ---------------------~~-~~fD~Ii~~~~~~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+ ++||+|+++.++++. .+. ..+++.+.++|||||.+++..+..
T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 81 KNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp -----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 33 689999999877652 222 247889999999999999876643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=124.81 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM------------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~------------- 193 (357)
++.+|||+|||+|..+..+++.+| +.+|+++|+|+.+++.|++++...+.+ +++++.+|+.+...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 678999999999999999999986 689999999999999999999988875 59999999865311
Q ss_pred ----c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 ----E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 ----~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. ++||+|++.... +++..+++.+.++|+|||++++...
T Consensus 140 ~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 1 579999998654 4567889999999999999998654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=130.36 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=90.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Ccc--ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM--EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~--~~~fD~Ii~~~ 204 (357)
.++.+|||+| |+|.++..++...|..+|+++|+|+.+++.|+++++..|+++++++.+|+.+ ++. .++||+|++++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 3578999999 9999999999887668999999999999999999999888789999999988 543 25899999999
Q ss_pred cccchhhHHHHHHHHHHhcccCceE-EEEec
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLL-FVHHF 234 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l-~~~~~ 234 (357)
+++... ...+++++.++|||||.+ ++++.
T Consensus 250 p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLEA-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHHH-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchHH-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 886553 588999999999999954 55443
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.4e-14 Score=130.89 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=91.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 118 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
...+++.+. ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++ ++|+|+.+|+.+ +.+..
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~~ 262 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPKG 262 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCCC
Confidence 344555554 56778999999999999999999999999999999 8887766532 489999999987 44444
Q ss_pred ccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|++..++|++++ ..+++++++++|||||++++.....+
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99999999998854 45899999999999999999877544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=122.52 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc----c-c--cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE----M-E--ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~----~-~--~~fD~ 199 (357)
++.+|||+|||+|..+..+++..| +.+|+++|+|+.+++.|++++...++. +++++.+|+.+.. . . ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 567999999999999999998876 689999999999999999999988874 7999999976521 1 1 57999
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|++.... .++..+++.+.++|+|||++++....
T Consensus 152 V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9988653 46788999999999999999986553
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=129.60 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 118 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 118 l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
...+++.+. ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++. ++|+|+.+|+.+ +.+..
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~ 260 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPSG 260 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCCC
Confidence 445666665 66788999999999999999999999999999999 8887766532 489999999987 44444
Q ss_pred ccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|+|++..++|+++ +...+++++++.|||||++++.....+
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 9999999999884 456899999999999999999876544
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=119.09 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDR 199 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~ 199 (357)
+.+.++.+|||+|||+|..+..+++.. |..+|+|+|+|+.+++...+.+... .|+.++.+|+..... .++||+
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEE
Confidence 447899999999999999999999874 5789999999999876665555443 389999999876421 268999
Q ss_pred EEEcccccchhhHHHHH-HHHHHhcccCceEEEEec
Q 018346 200 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 234 (357)
|+++.+. ++...++ ..+.+.|||||.+++...
T Consensus 150 I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 150 LYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9998765 4445544 556669999999999754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-14 Score=130.67 Aligned_cols=102 Identities=31% Similarity=0.411 Sum_probs=86.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccc--
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM-- 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~-- 205 (357)
++++|||||||+|.+++.+++.. ..+|+|+|.|+ +++.|+++++.+|+. +|+++.+|++++..++++|+|+|...
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY 160 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence 68899999999999999888773 35899999996 789999999999984 79999999999877789999999554
Q ss_pred -ccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 206 -FEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 206 -~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+.+-.....++....++|||||.++-.
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 333346788888889999999987643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=123.24 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=88.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-------cCcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-------ASYD 198 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~fD 198 (357)
.++.+|||+|||+|..+..+++..| +.+|+++|+|+.+++.|++++...++ ++++++.+|+.+.... ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3678999999999999999998876 68999999999999999999998887 4899999998653211 5799
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+++.+. ..+..+++.+.++|+|||++++...
T Consensus 148 ~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCH---HHHHHHHHHHHHHcCCCeEEEEECC
Confidence 99998763 4567899999999999999998653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=128.59 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcC-----------CCCeEEEEe
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEIIVA 186 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~-----------~~~v~~~~~ 186 (357)
..++..+.+.++.+|||+|||+|.++..+++. .|..+|+++|+|+.+++.|++++...+ .++++++.+
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 34555567788999999999999999999987 466899999999999999999988632 248999999
Q ss_pred ccCCCc--cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 187 DISTFE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 187 d~~~~~--~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+.+.. .+ ++||+|+++.+ ++..+++.+.++|+|||.+++..++.
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp CTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 998752 23 57999999654 33447899999999999999877643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-14 Score=125.06 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=84.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|+++. .++.+..+|+.+++.. ++||+|+++.+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence 4678999999999999999999877889999999999999988764 3789999999887655 789999997663
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
..++++.++|||||.+++.++....
T Consensus 159 -------~~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 159 -------CKAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp -------CCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred -------hhHHHHHHhcCCCcEEEEEEcCHHH
Confidence 2478899999999999999886543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-14 Score=126.38 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=90.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..+|.+|||+|||+|.+++.+++.. .++|+++|+||.+++.+++|++.+++. +++++++|..++...+.||.|+++++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3578999999999999999999874 579999999999999999999999985 79999999998876688999999977
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
... ..++..+.++|||||++.+..+..
T Consensus 202 ~~~----~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 202 VRT----HEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp SSG----GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CcH----HHHHHHHHHHcCCCCEEEEEeeec
Confidence 543 346677788999999998766544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=123.54 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=77.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC-CCcc--ccCccEEEEcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFEM--EASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~~~~--~~~fD~Ii~~~ 204 (357)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+. .++. .++||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 46789999999999999999987 78999999999999999887 238999999995 4443 3689999998
Q ss_pred cccchhhHHHHHHHHHHhcccCceEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.+...+++++.++|||||.++
T Consensus 119 -----~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 -----RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----SCCSGGGGGHHHHEEEEEEEE
T ss_pred -----CCHHHHHHHHHHHcCCCcEEE
Confidence 355678899999999999998
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=128.65 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=92.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCC-----cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSN-----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
..++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...|+ ++.+.++|.......++||+|+
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVI 206 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEE
Confidence 346789999999999999999887643 7899999999999999999988888 7899999987644347899999
Q ss_pred EcccccchhhH------------------HHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHMKNY------------------QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++++.+++.. ..++..+.+.|+|||++++..++.
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 99998665221 258999999999999999988754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=130.24 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ .++++++.+|+.+ +.+ .||+|++..++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p-~~D~v~~~~~l 256 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SIP-NADAVLLKYIL 256 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CCC-CCSEEEEESCG
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CCC-CccEEEeehhh
Confidence 45678999999999999999999999999999999 998877764 1379999999976 333 49999999999
Q ss_pred cchhhHH--HHHHHHHHhccc---CceEEEEeccCC
Q 018346 207 EHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~ 237 (357)
|++++.. .+++++.++||| ||++++..+..+
T Consensus 257 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 292 (352)
T 1fp2_A 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID 292 (352)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence 9997766 999999999999 999999876543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=130.18 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=91.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|++.++++ +++|+++|+.+... ..+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 467899999999999999999862 349999999999999999999999986 89999999876321 1479999
Q ss_pred EEccccc-----ch----hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFE-----HM----KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~-----~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++++.. .. ..+.+++..+.++|+|||.+++++....
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 9998873 22 4566788889999999999999876543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=125.17 Aligned_cols=112 Identities=14% Similarity=0.221 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 194 (357)
..++.+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++++++++|+.+.+.+
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 35566777788888899999999999999999998 57999999999999999998876655 4899999999886543
Q ss_pred cCccEEEEcccccchhh-HHHHHH--------------HH--HHhcccCceEE
Q 018346 195 ASYDRIYSIEMFEHMKN-YQNLLK--------------KI--SKWMKEDTLLF 230 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~-~~~~l~--------------~~--~~~LkpgG~l~ 230 (357)
+||+|+++.+++.... ...+++ ++ +.+|+|||.++
T Consensus 93 -~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 -FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp -CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred -hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7999999998876532 222332 22 35899999874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-14 Score=127.59 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEEeccCCCcc---ccCccE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVADISTFEM---EASYDR 199 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~d~~~~~~---~~~fD~ 199 (357)
..++.+|||||||+|..+..+++..+..+|+++|+|+.+++.|++++... ..++++++.+|+.+... .++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 35678999999999999999998766789999999999999999987431 22489999999877542 368999
Q ss_pred EEEcccccchhhH----HHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+++.+....+.. ..+++.+.++|||||++++...+
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9998776543322 68899999999999999997654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=125.40 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c-ccCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~~ 206 (357)
..+|||||||+|.++..+++.+|+.+|+++|+++.+++.|++++.....++++++.+|..++. . .++||+|+++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 349999999999999999998899999999999999999999876443358999999987642 2 2689999997543
Q ss_pred cch-h---hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 207 EHM-K---NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~-~---~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+.. + ...++++.+.++|+|||++++.....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 321 1 12689999999999999999987643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=130.66 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=88.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~ 205 (357)
.++.+|||+|||+|.+++.++.. ++.|+++|+|+.+++.|++|+..++++ ..+.++|+.+... .+.||+|+++++
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 35899999999999999999987 667999999999999999999999884 4677999876421 245999999988
Q ss_pred ccc---------hhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 206 FEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
... ..++..++..+.++|+|||.+++.+.+..
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 622 25678899999999999999987665543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=132.55 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=93.8
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 200 (357)
.+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.+++|+...|++ +.++++|+.+++ ..++||+|
T Consensus 96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~I 174 (464)
T 3m6w_A 96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRV 174 (464)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEE
T ss_pred hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEE
Confidence 345678899999999999999999988754 79999999999999999999999996 999999988764 23789999
Q ss_pred EEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++++.... + ...++++.+.++|||||+++.++.+.
T Consensus 175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 987765221 1 13779999999999999999876654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=131.12 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=93.6
Q ss_pred cCCC--CCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccE
Q 018346 125 SRLE--DGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDR 199 (357)
Q Consensus 125 ~~~~--~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~ 199 (357)
+... ++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.+++++...|++++.++++|+.+++. .++||+
T Consensus 111 L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 111 LFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp HTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEE
T ss_pred hCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCE
Confidence 3445 789999999999999999999864 47999999999999999999999998889999999987643 368999
Q ss_pred EEEcccccch------h----------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+++++.... + ....+++.+.++|||||++++++.+.
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 9997654221 1 13578999999999999999987654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=129.92 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=96.2
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASY 197 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~f 197 (357)
...+...++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.+++++...|+++++++++|+.+.+ .+ ++|
T Consensus 252 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 252 SIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred HHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 33456778899999999999999999998766 799999999999999999999999888999999998865 33 679
Q ss_pred cEEEEcccccch------hh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|+++++.... ++ ...+++.+.++|||||.+++.+.+.
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999987654322 22 1678999999999999999887654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=128.68 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCc------ccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCG------WGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG------~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~ 189 (357)
.++.++..+. .++.+||||||| +|..+..+++. +|+++|+|+|+|+.+. ...++++|+++|+.
T Consensus 205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~ 274 (419)
T 3sso_A 205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTT
T ss_pred HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEeccc
Confidence 3444555443 356899999999 77777777765 5889999999999972 12248999999999
Q ss_pred CCccc-------cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 190 TFEME-------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 190 ~~~~~-------~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++++. ++||+|+++.. +++.+....++++.++|||||++++.+...
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred ccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 86543 78999999864 667888999999999999999999987653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=127.29 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=90.0
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD 198 (357)
++... ..++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|+...|+ +++++.++|+.+++.+ ++||
T Consensus 210 l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD 288 (373)
T 3tm4_A 210 MIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVD 288 (373)
T ss_dssp HHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEE
T ss_pred HHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcC
Confidence 44444 5678899999999999999999886555999999999999999999999998 5899999999987755 7899
Q ss_pred EEEEcccccch-------h-hHHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHM-------K-NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~-------~-~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|++|+++... . .+..+++.+.++| ||.+++.+.
T Consensus 289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp EEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred EEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 99999997532 1 2477888888888 555555444
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=130.76 Aligned_cols=106 Identities=21% Similarity=0.199 Sum_probs=92.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----ccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~fD~Ii~~ 203 (357)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++|+..+++++++++++|+.+... ..+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 67999999999999999999999998789999999887532 2579999999
Q ss_pred ccccc---------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++... ...+..++..+.++|+|||.+++.+.+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 87632 2557789999999999999999987654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.2e-14 Score=122.50 Aligned_cols=98 Identities=16% Similarity=0.249 Sum_probs=81.3
Q ss_pred CCCEEEEECCcccHHHHHHHHH----CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC---cc-c-cCccE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EM-E-ASYDR 199 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~----~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~---~~-~-~~fD~ 199 (357)
++.+|||||||+|..+..+++. .|+++|+|+|+|+.+++.|+. .. ++|+++++|+.+. +. . .+||+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhhccCCCCE
Confidence 4679999999999999999987 578999999999999888761 12 4899999999874 32 2 36999
Q ss_pred EEEcccccchhhHHHHHHHHHH-hcccCceEEEEec
Q 018346 200 IYSIEMFEHMKNYQNLLKKISK-WMKEDTLLFVHHF 234 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~~~~ 234 (357)
|++... | .++..++.++.+ +|||||++++...
T Consensus 156 I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 998776 3 367889999997 9999999999754
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-15 Score=129.56 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 194 (357)
.++.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. +.++++++++|+.+.+.+
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 3455777777778899999999999999999988 5899999999999998887765 234899999999987654
Q ss_pred cCccEEEEcccccchh-hHHHH----------H----HHHHHhcccCceEEEEecc
Q 018346 195 ASYDRIYSIEMFEHMK-NYQNL----------L----KKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~-~~~~~----------l----~~~~~~LkpgG~l~~~~~~ 235 (357)
++| .|++|+++.... ....+ + +.+.++|+|||.+.+....
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~ 147 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT 147 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence 568 788998875431 12222 2 6689999999998775543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=131.72 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=94.3
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRI 200 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~I 200 (357)
.+...++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+...|+.++.++++|..++. .+++||+|
T Consensus 100 ~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 100 AAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEE
T ss_pred HcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEE
Confidence 34567889999999999999999998764 4799999999999999999999999988999999988754 23789999
Q ss_pred EEcccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++++.... .....+++.+.++|||||+++.++.+.
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 998874221 123478999999999999999877654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=127.94 Aligned_cols=108 Identities=11% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-C-CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~-~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+..+++ + +++++++|+.+... ..+||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 367899999999999999999873 45999999999999999999999998 6 89999999887532 2579999
Q ss_pred EEcccccc---------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++++... ...+..++..+.+.|+|||++++++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99987632 2567889999999999999999977543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=126.56 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=87.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc--c-ccCccE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--M-EASYDR 199 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~-~~~fD~ 199 (357)
..++.+|||||||+|.++..+++..|..+|+++|+|+.+++.|++++... ++ ++++++.+|+.+.. . .++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 45678999999999999999998766789999999999999999998753 33 48999999987642 1 268999
Q ss_pred EEEcccc--cchhh--HHHHHHHHHHhcccCceEEEEec
Q 018346 200 IYSIEMF--EHMKN--YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 200 Ii~~~~~--~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+++... +.... ...+++.+.++|+|||++++...
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9997652 21121 47899999999999999999643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=129.54 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=92.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-----ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~~~fD~Ii 201 (357)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++..++++ +++++++|+.+... .++||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999999986 2459999999999999999999999986 89999999877532 25799999
Q ss_pred Ecccccc---------hhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 202 SIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 202 ~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++++... ..++..++..+.++|+|||.+++.+.+..
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9987633 25678899999999999999988776543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=119.47 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
++..++..+ .++.+|||||||+|-++..++...|..+|+++|+++.+++.+++++..+|+ +.++...|....+++++
T Consensus 122 fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~ 198 (281)
T 3lcv_B 122 FYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEP 198 (281)
T ss_dssp HHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSC
T ss_pred HHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCC
Confidence 344455444 457799999999999999999887899999999999999999999999998 68999999987666688
Q ss_pred ccEEEEcccccchhhHH--HHHHHHHHhcccCceEEE
Q 018346 197 YDRIYSIEMFEHMKNYQ--NLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~ 231 (357)
||+|+++-+++++++.. ..+ ++.+.|+|+|+++-
T Consensus 199 ~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 199 ADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp CSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred cchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 99999999999995542 355 89999999998654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-12 Score=110.28 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=83.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ +++++++|+.+++ ++||+|+++++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~D~v~~~~p 121 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIMNPP 121 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEECCC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--CCCCEEEEcCC
Confidence 44568899999999999999999873 35899999999999999999988887 8999999998864 58999999999
Q ss_pred ccchh--hHHHHHHHHHHhcccCceEE
Q 018346 206 FEHMK--NYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~~--~~~~~l~~~~~~LkpgG~l~ 230 (357)
++... ....+++.+.+++ ||.++
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcEEE
Confidence 87762 3457888888888 55433
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=120.72 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.++.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+.++++++.+|+.+.+. .+
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-~~ 106 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-PK 106 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC-CC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc-cc
Confidence 4556667777778899999999999999999977 67999999999999999999987777789999999988754 48
Q ss_pred ccEEEEcccccchh-hHHHHH---------------HHHHHhcccCce
Q 018346 197 YDRIYSIEMFEHMK-NYQNLL---------------KKISKWMKEDTL 228 (357)
Q Consensus 197 fD~Ii~~~~~~~~~-~~~~~l---------------~~~~~~LkpgG~ 228 (357)
||+|+++.+++... ....++ +.+.++++|+|.
T Consensus 107 ~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 107 FDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp CSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred CCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 99999999887552 223333 335567777663
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=123.88 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--------------------------------------cEEEE
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKITG 158 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--------------------------------------~~v~~ 158 (357)
+...++...+..++..|||.+||+|.+++.++....+ .+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 4455677777788899999999999999998865322 46999
Q ss_pred EcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch----hhHHHHHHHHHHhccc--CceEEE
Q 018346 159 ICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLLFV 231 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~Lkp--gG~l~~ 231 (357)
+|+|+.+++.|++|+...|++ ++++.++|+.+++.+.+||+|++|+++..- .+...+.+.+.+.||+ ||.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999985 699999999987666789999999998432 3455566666666665 999888
Q ss_pred EeccCC
Q 018346 232 HHFCHK 237 (357)
Q Consensus 232 ~~~~~~ 237 (357)
.+....
T Consensus 349 it~~~~ 354 (393)
T 3k0b_A 349 LTSYEL 354 (393)
T ss_dssp EECCTT
T ss_pred EECCHH
Confidence 776543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=124.22 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--------------------------------------cEEEE
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKITG 158 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--------------------------------------~~v~~ 158 (357)
+...++...+..++.+|||+|||+|.+++.++....+ .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 4445667777778899999999999999998876321 57999
Q ss_pred EcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch----hhHHHHHHHHHHhccc--CceEEE
Q 018346 159 ICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLLFV 231 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~Lkp--gG~l~~ 231 (357)
+|+|+.+++.|++|+...|++ +|+|.++|+.+++.+.+||+|++|+++..- .+...+++.+.+.||+ ||.+++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999999999999999999985 799999999987666789999999998532 3456677777777776 888888
Q ss_pred EeccC
Q 018346 232 HHFCH 236 (357)
Q Consensus 232 ~~~~~ 236 (357)
.+...
T Consensus 343 it~~~ 347 (385)
T 3ldu_A 343 ITSYE 347 (385)
T ss_dssp EESCT
T ss_pred EECCH
Confidence 77644
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=128.40 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=95.3
Q ss_pred HHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCcc
Q 018346 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYD 198 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD 198 (357)
...+...++.+|||+|||+|..+..+++..++.+|+++|+|+.+++.+++++...|+ ++.++++|+.+.+ .+ ++||
T Consensus 239 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCC
Confidence 344566788999999999999999999998778999999999999999999999888 6899999998865 23 5799
Q ss_pred EEEEcccccch------hh----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|+++++.... ++ ...+++.+.++|||||++++++.+.
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99997765322 22 2578999999999999999987544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=126.26 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=86.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH--cCC--CCeEEEEeccCCCc--cccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~--~~~--~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
.++.+|||||||+|.++..+++..|..+|+++|+|+.+++.|++++.. .+. ++++++.+|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 356899999999999999999876678999999999999999998765 222 48999999987632 136899999
Q ss_pred Ecccccc--hhhH--HHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEH--MKNY--QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~--~~~~--~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++..-.. .... ..+++.+.++|+|||++++...+
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9864211 1111 78999999999999999997654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=112.54 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++. +++++++|+.+++ ++||+|+++++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCC
Confidence 4457789999999999999999987 34589999999999999998864 6899999998864 68999999999
Q ss_pred ccchhh--HHHHHHHHHHhcccCceEEEE
Q 018346 206 FEHMKN--YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 206 ~~~~~~--~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+++... ...+++.+.+.+ |+ +++.
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp C-------CHHHHHHHHHHE--EE-EEEE
T ss_pred chhccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 998843 346888888887 44 4443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=122.22 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--------------------------------------cEEEE
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------------CKITG 158 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--------------------------------------~~v~~ 158 (357)
+...++...+..++..|||.+||+|.+++.++....+ .+|+|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 4445667777788899999999999999998865322 46999
Q ss_pred EcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch----hhHHHHHHHHHHhccc--CceEEE
Q 018346 159 ICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKE--DTLLFV 231 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~Lkp--gG~l~~ 231 (357)
+|+|+.+++.|++|+...|+. ++++.++|+.+++.+.+||+|++|+++..- .+...+++.+.+.||+ ||.+++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999999999999999999985 699999999987665789999999998532 4566777777777776 999988
Q ss_pred EeccCC
Q 018346 232 HHFCHK 237 (357)
Q Consensus 232 ~~~~~~ 237 (357)
.++...
T Consensus 342 it~~~~ 347 (384)
T 3ldg_A 342 LTNDTD 347 (384)
T ss_dssp EESCTT
T ss_pred EECCHH
Confidence 877543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=124.01 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=84.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH--cC--CCCeEEEEeccCCC-cc-ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LE--LQNVEIIVADISTF-EM-EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~--~~--~~~v~~~~~d~~~~-~~-~~~fD~Ii 201 (357)
.++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++.. .+ .++++++.+|+.+. +. .++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 356899999999999999999876678999999999999999998864 22 24899999998663 21 26799999
Q ss_pred Ecccccchh-----hHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++.+..+.. ....+++.+.++|+|||++++...+
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 976532121 2368899999999999999997543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=123.04 Aligned_cols=109 Identities=20% Similarity=0.127 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~I 200 (357)
..++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++...+ .++++++.+|+.+... .++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 446789999999999999999987667899999999999999999876432 2489999999876421 3689999
Q ss_pred EEcccccchh--hH--HHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHMK--NY--QNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~~--~~--~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++.+....+ .. ..+++.+.++|+|||++++...+
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9976543221 22 68999999999999999987553
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=122.28 Aligned_cols=108 Identities=22% Similarity=0.126 Sum_probs=86.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc-c-ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE-M-EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~-~-~~~fD~Ii 201 (357)
.++.+|||||||+|.++..+++..|..+|+++|+++.+++.|++++... +. ++++++.+|..+.. . .++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999997756689999999999999999987542 22 48999999987632 1 36899999
Q ss_pred Ecccccchh----hHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++.+....+ ...++++.+.++|+|||++++...+
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 987653221 1367999999999999999997643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=125.40 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=87.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ +||+|+++.++
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~v~~~~vl 261 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SADAVLLKWVL 261 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CCSEEEEESCG
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-CceEEEEcccc
Confidence 34668999999999999999999999999999999 787766653 2479999999987 443 59999999999
Q ss_pred cchhhHH--HHHHHHHHhccc---CceEEEEeccCC
Q 018346 207 EHMKNYQ--NLLKKISKWMKE---DTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~ 237 (357)
|++++.. .+++++.++|+| ||++++..+..+
T Consensus 262 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 262 HDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp GGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 9997766 999999999999 999999776543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=123.37 Aligned_cols=108 Identities=18% Similarity=0.350 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
.++..+.+ ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..++++ ++|+.+|+.+... .
T Consensus 280 ~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-~ 352 (425)
T 2jjq_A 280 NLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-K 352 (425)
T ss_dssp HHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-T
T ss_pred HHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-c
Confidence 34444444 356789999999999999999987 679999999999999999999999886 9999999998653 3
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+||+|+++++..... ..+++.+. .|+|||.+++++
T Consensus 353 ~fD~Vv~dPPr~g~~--~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLH--PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TCSEEEECCCTTCSC--HHHHHHHH-HHCCSEEEEEES
T ss_pred CCCEEEEcCCccchH--HHHHHHHH-hcCCCcEEEEEC
Confidence 899999999875543 33555554 489999999875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-13 Score=135.60 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=91.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCc-c-ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE-M-EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~-~-~~~fD~Ii~~~ 204 (357)
++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|+..++++ +++++++|+.+.. . .++||+|++++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 68899999999999999999753 347999999999999999999999985 7999999998742 2 26899999998
Q ss_pred cc-----------cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MF-----------EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+. ....++..++..+.++|+|||++++++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 64 33467889999999999999999987765
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=123.91 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH--cCC--CCeEEEEeccCCC-cc-ccCccEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LEL--QNVEIIVADISTF-EM-EASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~--~~~--~~v~~~~~d~~~~-~~-~~~fD~I 200 (357)
..++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++.. .++ ++++++.+|..+. +. .++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3567899999999999999999876678999999999999999998865 232 4899999998763 21 3689999
Q ss_pred EEcccccchh----hHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++.+.+..+ ....+++.+.++|+|||++++...+
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9987643221 2357899999999999999997644
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=123.76 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.+++. ++ ++.+|+++|+|+.+++.|++|+..+++ ++++++++|+.+.. ++||+|+++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcH
Confidence 4788999999999999999 76 378999999999999999999999998 48999999998865 789999999775
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.. ..+++.+.++|+|||.+++.+....
T Consensus 269 ~~----~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 FA----HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp TG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred hH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 43 3678889999999999999777654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-13 Score=112.58 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=82.6
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
.+..+.+... +.++.+|||+|||+|.++..+++. +.+|+|+|+++.. ..++++++++|+.+...
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~ 78 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFD 78 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHH
Confidence 3444555544 367899999999999999999987 7899999999852 23489999999987541
Q ss_pred ------c----cCccEEEEcccccch-----------hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 194 ------E----ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 194 ------~----~~fD~Ii~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
. ++||+|+|+.+.... .....+++.+.++|||||.+++.++...
T Consensus 79 ~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 79 DIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp HHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred HHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 1 389999998643211 2245778889999999999999887544
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=124.76 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=88.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH--cC---CCCeEEEEeccCCCc-c-ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV--LE---LQNVEIIVADISTFE-M-EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~--~~---~~~v~~~~~d~~~~~-~-~~~fD~I 200 (357)
.++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++.. .+ .++++++.+|+.+.. . .++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 456899999999999999999876678999999999999999998865 22 248999999987642 1 3689999
Q ss_pred EEcccccc---hh--h--HHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEH---MK--N--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~---~~--~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+++.+.+. -+ . ...+++.+.++|+|||++++...+
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99877654 11 1 478999999999999999997543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=111.34 Aligned_cols=99 Identities=19% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCC---------cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEE-EeccCCCc----
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSN---------CKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE---- 192 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~---------~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~~~---- 192 (357)
+.++.+|||+|||+|.++..+++..+. .+|+|+|+|+.+ ..++++++ .+|+....
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 467899999999999999999998754 799999999842 23478899 89987642
Q ss_pred ----cc-cCccEEEEcccccc----hhhH-------HHHHHHHHHhcccCceEEEEeccC
Q 018346 193 ----ME-ASYDRIYSIEMFEH----MKNY-------QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ----~~-~~fD~Ii~~~~~~~----~~~~-------~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+ ++||+|+++.+++. ..+. ..+++++.++|||||.+++.++..
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 12 57999999775543 2222 578999999999999999987644
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=124.27 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CC--CCeEEEEeccCCCc--cccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~--~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
.++.+|||||||+|..+..+++..|..+|+++|+|+.+++.|++++... ++ ++++++.+|+.+.. ..++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999998767789999999999999999988643 22 48999999987632 136899999
Q ss_pred Ecccccchhh---H-HHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKN---Y-QNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~---~-~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++...+..+. + ..+++.+.++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9774322111 1 688999999999999999975
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-13 Score=120.95 Aligned_cols=106 Identities=9% Similarity=0.039 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--C---------CCCeEEEEeccCCCcc-cc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---------LQNVEIIVADISTFEM-EA 195 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~---------~~~v~~~~~d~~~~~~-~~ 195 (357)
.++.+|||||||+|..+..+++. |..+|+++|+|+.+++.|++++ .. + .++++++.+|+.+... .+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccC
Confidence 45689999999999999999987 7789999999999999999987 33 2 2489999999865321 36
Q ss_pred CccEEEEcccccchh--h--HHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHMK--N--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~--~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+||+|+++.+.+..+ . ...+++.+.++|+|||++++...+
T Consensus 152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 799999987643211 1 367899999999999999997543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=116.00 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
.++.+|||+|||+|.++..++ .+|+|+|+|+. ++.++.+|+.+++.+ ++||+|+++.++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 467899999999999988763 68999999987 467889999887654 689999999999
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++ ++...+++++.++|+|||.+++..+.
T Consensus 126 ~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 126 MG-TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CS-SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred cc-cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 75 78999999999999999999997654
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-13 Score=127.20 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-------------CCcEEEEEcCCHHHHHHHHHHHHHcCCC--Ce
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------------SNCKITGICNSKTQKEFIEEQCRVLELQ--NV 181 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-------------p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v 181 (357)
..+.+++.+...++.+|||.|||+|.++..+++.. +..+++|+|+++.+++.|+.++...|+. ++
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 34445555566678899999999999999888653 2468999999999999999999888874 67
Q ss_pred EEEEeccCCCccccCccEEEEcccccchhh-----------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 182 EIIVADISTFEMEASYDRIYSIEMFEHMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 182 ~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+.++|....+...+||+|++|+|+..... ...+++.+.+.|||||++++..++.
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~ 310 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 310 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence 889999887654468999999999876421 2378999999999999999988753
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=111.80 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=85.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||||||+|.++..+. |..+|+|+|+|+.+++.+++++...+. +..+..+|....+++++||+|++.-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 467899999999999999877 689999999999999999999988886 8999999998877678999999999998
Q ss_pred chhhH-HHHHHHHHHhcccCceEEEEec
Q 018346 208 HMKNY-QNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~~~~-~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++++. +...-++.+.|+++|++ ++.|
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEE-EEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEE-EEcC
Confidence 88432 22333777899999765 4444
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=125.06 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
..+.+++.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .+++++++|+.+....+
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~ 97 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGE 97 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSS
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccC
Confidence 34455666655556799999999999999999875 578999999999988766 37899999998865447
Q ss_pred CccEEEEcccccchh-----------h------------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMK-----------N------------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~-----------~------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|++|+++.... . ...+++.+.++|+|||.+++..+..
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 899999999884321 1 1256889999999999999988864
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=118.08 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEE-EeccCCCcc-
Q 018346 117 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFEM- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~~~~- 193 (357)
.+..+++...+. ++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.++. +++... ..|+..+..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchh
Confidence 444566666664 5779999999999999999887 2469999999999998754421 133322 234433321
Q ss_pred --c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 --E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+ .+||+|+++.+++++ ..++.++.++|+|||.+++.
T Consensus 146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence 2 349999999888765 67899999999999999886
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-13 Score=121.11 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH-HcCCC-CeEEE--EeccCCCc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-VLELQ-NVEII--VADISTFE 192 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~-~~~~~-~v~~~--~~d~~~~~ 192 (357)
.+..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+|+ ++..++++.. ..... ++.++ ++|+.+++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence 3455555545567899999999999999999876 5899999998 4332222100 00111 78999 89998865
Q ss_pred cccCccEEEEcccccchh-----hH--HHHHHHHHHhcccCc--eEEEEecc
Q 018346 193 MEASYDRIYSIEMFEHMK-----NY--QNLLKKISKWMKEDT--LLFVHHFC 235 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~-----~~--~~~l~~~~~~LkpgG--~l~~~~~~ 235 (357)
+++||+|+|+.+ +... .. ..+++.+.++||||| .+++.++.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 478999999876 3321 11 137899999999999 99987776
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-13 Score=119.91 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH---HHcCCCCeEEE--EeccCCCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLELQNVEII--VADISTFE 192 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~---~~~~~~~v~~~--~~d~~~~~ 192 (357)
+..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+|+ ++..++++. ...+. ++.++ ++|+.+++
T Consensus 63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGW-NIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTG-GGEEEECSCCTTTSC
T ss_pred HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCC-CeEEEecccCHhHCC
Confidence 445555555567899999999999999999876 5899999998 432221110 00111 68999 89998875
Q ss_pred cccCccEEEEcccccchhh-----H--HHHHHHHHHhcccCc--eEEEEecc
Q 018346 193 MEASYDRIYSIEMFEHMKN-----Y--QNLLKKISKWMKEDT--LLFVHHFC 235 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~-----~--~~~l~~~~~~LkpgG--~l~~~~~~ 235 (357)
+++||+|+|+.+ ++..+ . ..+++.+.++||||| .+++.++.
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 478999999876 33211 1 137899999999999 99997776
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-13 Score=111.66 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=78.0
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cCccEE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASYDRI 200 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~fD~I 200 (357)
+++.++.+|||+|||. +++|+|+.|++.|+++... ++++.++|+.+++. + ++||+|
T Consensus 8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEE
Confidence 4567899999999996 2399999999999887532 58999999998765 3 789999
Q ss_pred EEcccccch-hhHHHHHHHHHHhcccCceEEEEec
Q 018346 201 YSIEMFEHM-KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 201 i~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+++.+++|+ ++...+++++.++|||||++++..+
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 999999999 8999999999999999999999544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=110.03 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. .++++++++|+.+.+++
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCccc
Confidence 35667788888888999999999999999999998 68999999999999999998873 34899999999987665
Q ss_pred cCccEEEEcccccch
Q 018346 195 ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~ 209 (357)
.+||+|++|.+++..
T Consensus 113 ~~fD~Iv~NlPy~is 127 (295)
T 3gru_A 113 LDFNKVVANLPYQIS 127 (295)
T ss_dssp SCCSEEEEECCGGGH
T ss_pred CCccEEEEeCccccc
Confidence 579999999888643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=119.32 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
..++..+++.+... +.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.+++++++|+.+|+.+...
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence 44566666766544 578999999999999999875 56999999999999999999999998899999999876421
Q ss_pred -c---------------cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 194 -E---------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 194 -~---------------~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
. .+||+|+++++...+ ...+.+.|+|+|.+++.+.+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGL------DSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC------CHHHHHHHTTSSEEEEEESC
T ss_pred HhhccccccccccccccCCCCEEEECcCcccc------HHHHHHHHhCCCEEEEEECC
Confidence 1 279999999987543 23455666788887776544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=111.81 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=75.5
Q ss_pred cCCCCCCEEEEECCcc------cHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE-EEeccCCCccccC
Q 018346 125 SRLEDGHTVLDVGCGW------GSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEI-IVADISTFEMEAS 196 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~------G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~-~~~d~~~~~~~~~ 196 (357)
+.+.++.+|||+|||+ |. ..+++..| +.+|+|+|+|+. ++++++ +++|+.+.++.++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~~~ 123 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTANK 123 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCSSC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCccCc
Confidence 3567889999999955 66 45566665 689999999997 137888 9999988765578
Q ss_pred ccEEEEcccccc-----------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+|+...+. ......+++.+.++|||||.+++..+..
T Consensus 124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 999999854321 2235689999999999999999977654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-12 Score=115.45 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH----cCCCCeEEEEeccCCCccccCccEEEEc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV----LELQNVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~----~~~~~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
..+.+|||||||+|..+..+++. + .+|+++|+++.+++.|++++.. ...++++++.+|..+.. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEEC
Confidence 45689999999999999999987 6 8999999999999999887532 12248999999998765 789999997
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.. ++..+++.+.+.|+|||++++...+
T Consensus 147 ~~-----dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 147 QE-----PDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp SC-----CCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CC-----ChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 42 3345899999999999999986543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-13 Score=118.10 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCeEEEE-eccCCC
Q 018346 117 MLELYCERSRLE-DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---LQNVEIIV-ADISTF 191 (357)
Q Consensus 117 ~l~~l~~~~~~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~-~d~~~~ 191 (357)
.+..+++.+.+. ++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++..... ..++.+.. .|+..
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ- 101 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-
Confidence 344555655554 46799999999999999999872 3599999999999998776533211 01222222 11111
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..||.+.+..++..+ ..+++++.++|||||.+++..
T Consensus 102 ---~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 102 ---GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp ---CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred ---CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence 125655555555544 678999999999999999854
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-12 Score=117.35 Aligned_cols=101 Identities=14% Similarity=0.015 Sum_probs=86.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---------------CCCCeEEEEeccCCCcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---------------ELQNVEIIVADISTFEM 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---------------~~~~v~~~~~d~~~~~~ 193 (357)
++.+|||+|||+|..++.+++..++.+|+++|+|+.+++.+++|++.+ ++++++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 578999999999999999999877789999999999999999999998 77569999999877532
Q ss_pred --ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.++||+|+++++. ....+++.+.+.|+|||.+++..
T Consensus 127 ~~~~~fD~I~lDP~~----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPFG----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCSS----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCCC----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 2579999987642 23578888999999999888865
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=107.97 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
..++.+++.+++.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ++++++++|+.+++++
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCccc
Confidence 35566777777778899999999999999999998 589999999999999999887542 4899999999887654
Q ss_pred -cCccEEEEcccccc
Q 018346 195 -ASYDRIYSIEMFEH 208 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~ 208 (357)
..| .|++|.+++.
T Consensus 93 ~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 93 NQSY-KIFGNIPYNI 106 (244)
T ss_dssp SCCC-EEEEECCGGG
T ss_pred CCCe-EEEEeCCccc
Confidence 234 6888888753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=119.00 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=79.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC----CHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN----SKTQKEFIEEQCRVLELQNVEIIVA-DISTFE 192 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~----s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~ 192 (357)
+..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. ....+.++|.++++ |+..++
T Consensus 71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP 145 (305)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC
Confidence 334455433467889999999999999999976 47999999 554432111 11112247999999 888764
Q ss_pred cccCccEEEEccccc---chhhHH---HHHHHHHHhcccCceEEEEeccC
Q 018346 193 MEASYDRIYSIEMFE---HMKNYQ---NLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~---~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.++||+|+|+.+.+ +..+.. .++..+.++|||||.+++.++..
T Consensus 146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 36899999987653 222222 57888999999999999877655
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=110.43 Aligned_cols=112 Identities=12% Similarity=-0.031 Sum_probs=88.3
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCcc
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYD 198 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD 198 (357)
.+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|+++++++.+|+.++... .+||
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCC
Confidence 3456788999999999999999999875 4579999999999999999999999988999999998876432 4799
Q ss_pred EEEEcccccch------hh------------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHM------KN------------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~------~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.|+++++.... ++ ..++++.+.++|+ ||+++.++.+.
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 99997654221 01 1346777777776 99888766543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-12 Score=117.23 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=86.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEEeccCCCcc---ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEM---EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~~~~~---~~~fD~Ii 201 (357)
.++.+|||++||+|.+++.++.+.++ .+|+++|+|+.+++.+++|++.+++++ ++++.+|+.+... .++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35789999999999999999987545 589999999999999999999999864 9999999876432 25799999
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++ +. ....+++.+.+.|+|||+++++.
T Consensus 131 lDP-~g---~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-FG---TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-SS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-Cc---CHHHHHHHHHHHhCCCCEEEEEe
Confidence 998 22 23568889999999999888876
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-11 Score=106.93 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 194 (357)
.++.+++.+++.++ +|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. ++++++++|+.+++.+
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc
Confidence 55667788888888 9999999999999999988 57999999999999999988752 3899999999987655
Q ss_pred cCccEEEEcccccch
Q 018346 195 ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~ 209 (357)
..+|.|++|.+++--
T Consensus 109 ~~~~~iv~NlPy~is 123 (271)
T 3fut_A 109 PQGSLLVANLPYHIA 123 (271)
T ss_dssp CTTEEEEEEECSSCC
T ss_pred cCccEEEecCccccc
Confidence 368999999998654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=109.90 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=75.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c-
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E- 194 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~- 194 (357)
++.+++.+.+.++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++...+ ++++++++|+.+++. .
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHh
Confidence 344566667778899999999999999999999887899999999999999999998877 599999999987641 1
Q ss_pred ---cCccEEEEccccc
Q 018346 195 ---ASYDRIYSIEMFE 207 (357)
Q Consensus 195 ---~~fD~Ii~~~~~~ 207 (357)
.+||.|+++.++.
T Consensus 94 ~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 94 LGIEKVDGILMDLGVS 109 (301)
T ss_dssp TTCSCEEEEEEECSCC
T ss_pred cCCCCCCEEEEcCccc
Confidence 4799999987653
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=105.87 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-- 194 (357)
.++.+++.+++.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++.. .++++++++|+.+++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSV 92 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGS
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHh
Confidence 5566777788888999999999999999999987 57999999999999999998765 34899999999987653
Q ss_pred ---cCccEEEEccccc
Q 018346 195 ---ASYDRIYSIEMFE 207 (357)
Q Consensus 195 ---~~fD~Ii~~~~~~ 207 (357)
++|| |++|.+++
T Consensus 93 ~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 93 KTDKPLR-VVGNLPYN 107 (255)
T ss_dssp CCSSCEE-EEEECCHH
T ss_pred ccCCCeE-EEecCCcc
Confidence 3577 88998874
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=117.44 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC------------------------------------------CCc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY------------------------------------------SNC 154 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~------------------------------------------p~~ 154 (357)
+...++...+..++..|||.+||+|.+++.++... +..
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 44456667777788899999999999999887642 125
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc---cCccEEEEcccccch----hhHHHHHHHHH---Hhc
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKIS---KWM 223 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~fD~Ii~~~~~~~~----~~~~~~l~~~~---~~L 223 (357)
+++|+|+++.+++.|++|+...|++ .++|.++|+.++..+ ++||+|++|+|+..- .+...+.+.+. +.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999986 599999999886433 289999999998532 23444444444 445
Q ss_pred ccCceEEEEeccCC
Q 018346 224 KEDTLLFVHHFCHK 237 (357)
Q Consensus 224 kpgG~l~~~~~~~~ 237 (357)
.|||.+++.++...
T Consensus 338 ~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 338 FGGWNLSLFSASPD 351 (703)
T ss_dssp CTTCEEEEEESCHH
T ss_pred CCCCeEEEEeCCHH
Confidence 58999999877543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=118.70 Aligned_cols=118 Identities=8% Similarity=0.005 Sum_probs=93.8
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC------------------CcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS------------------NCKITGICNSKTQKEFIEEQCRVLELQN 180 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p------------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~ 180 (357)
..+++.+...++.+|||.|||+|.++..+++... ...++|+|+++.++..|+.++...|+++
T Consensus 159 ~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 159 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 3455555666788999999999999988876531 2379999999999999999998888754
Q ss_pred -----eEEEEeccCCCcc--ccCccEEEEcccccchhh--------------HHHHHHHHHHhcccCceEEEEeccC
Q 018346 181 -----VEIIVADISTFEM--EASYDRIYSIEMFEHMKN--------------YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 181 -----v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+.+.++|....+. ..+||+|++|+|+..... ...++..+.+.|+|||++.+..+..
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~ 315 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 315 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 7889999876432 267999999999865421 2368999999999999999987754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=104.47 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=67.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCH-------HHHHHHHHHHHHcCCC-CeEEEEeccCCCc--cc-
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK-------TQKEFIEEQCRVLELQ-NVEIIVADISTFE--ME- 194 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~-------~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~- 194 (357)
...++.+|||+|||+|..++.++.. +++|+++|+|+ .+++.|++++..+++. +++++++|+.+.. .+
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 3446789999999999999999986 67999999999 9999999988877664 5999999998742 22
Q ss_pred --cCccEEEEcccccc
Q 018346 195 --ASYDRIYSIEMFEH 208 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~ 208 (357)
++||+|++++++.+
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 57999999988765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=101.58 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
.++.+++.+.+.++.+|||||||+|.++..+++..+. .+|+|+|+|+.+++.++++. .++++++++|+.+++++
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGG
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChh
Confidence 4566777778888999999999999999999988421 34999999999999999883 23899999999987654
Q ss_pred c-------CccEEEEccccc
Q 018346 195 A-------SYDRIYSIEMFE 207 (357)
Q Consensus 195 ~-------~fD~Ii~~~~~~ 207 (357)
. ..+.|++|.+++
T Consensus 106 ~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 106 SIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GGSCSSSSCCEEEEEECCHH
T ss_pred HhcccccCCceEEEEccCcc
Confidence 2 234788998874
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.7e-10 Score=97.59 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
..++.+++.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++ +..+++++++|+.+++++.
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhH
Confidence 35666788888888899999999999999999976 347999999999999999876 2248999999999876652
Q ss_pred --CccEEEEcccccc
Q 018346 196 --SYDRIYSIEMFEH 208 (357)
Q Consensus 196 --~fD~Ii~~~~~~~ 208 (357)
....|++|.+++-
T Consensus 93 ~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 93 LGKELKVVGNLPYNV 107 (249)
T ss_dssp SCSSEEEEEECCTTT
T ss_pred ccCCcEEEEECchhc
Confidence 1247888888853
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-09 Score=103.46 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=89.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCC--cc--ccCcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTF--EM--EASYD 198 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~--~~--~~~fD 198 (357)
.++.+|+|.+||+|.+...+++.. +...++|+|+++.++..|+.|+...|+ +++.+.++|.... +. ..+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 467899999999999999988874 256999999999999999999988888 4788999998765 31 26799
Q ss_pred EEEEcccccch--------hh---------------HHHHHHHHHHhcc-cCceEEEEeccC
Q 018346 199 RIYSIEMFEHM--------KN---------------YQNLLKKISKWMK-EDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~--------~~---------------~~~~l~~~~~~Lk-pgG~l~~~~~~~ 236 (357)
+|++|+|+..- .+ .-.++..+.+.|+ |||++.+..|..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 99999998421 00 1247899999999 999999988765
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-10 Score=110.79 Aligned_cols=119 Identities=12% Similarity=0.029 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC---------------CcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS---------------NCKITGICNSKTQKEFIEEQCRVLELQ-N 180 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p---------------~~~v~~vD~s~~~l~~a~~~~~~~~~~-~ 180 (357)
....+++.+...++ +|||.+||+|.+...+++..+ ...++|+|+++.++..|+.++...|++ +
T Consensus 233 Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 233 IVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 33445555555444 999999999999888764321 458999999999999999999888874 4
Q ss_pred eEEEEeccCCCcc--ccCccEEEEcccccch-------------------------h----hHHHHHHHHHHhcccCceE
Q 018346 181 VEIIVADISTFEM--EASYDRIYSIEMFEHM-------------------------K----NYQNLLKKISKWMKEDTLL 229 (357)
Q Consensus 181 v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~-------------------------~----~~~~~l~~~~~~LkpgG~l 229 (357)
+.+.++|....+. ..+||+|++|+|+..- + ..-.++..+.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 4447888765432 2689999999998641 0 0125889999999999999
Q ss_pred EEEeccC
Q 018346 230 FVHHFCH 236 (357)
Q Consensus 230 ~~~~~~~ 236 (357)
.+..|..
T Consensus 392 aiVlP~g 398 (544)
T 3khk_A 392 ALLLANG 398 (544)
T ss_dssp EEEEETH
T ss_pred EEEecch
Confidence 9988754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=106.92 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--CCCCeEEEEeccCCC-cc--ccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--ELQNVEIIVADISTF-EM--EASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~fD~Ii~~ 203 (357)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++|+... |+++++++++|+.+. +. .++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4789999999999999999876 679999999999999999999988 777899999999875 22 1589999999
Q ss_pred ccccc
Q 018346 204 EMFEH 208 (357)
Q Consensus 204 ~~~~~ 208 (357)
+++..
T Consensus 171 PPrr~ 175 (410)
T 3ll7_A 171 PARRS 175 (410)
T ss_dssp CEEC-
T ss_pred CCCcC
Confidence 87743
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=107.68 Aligned_cols=110 Identities=10% Similarity=0.026 Sum_probs=82.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCC---CcEEEEEcCCHHHHHHH--HHHHHH----cCCCCeEEEEeccCCCc--cccC
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYS---NCKITGICNSKTQKEFI--EEQCRV----LELQNVEIIVADISTFE--MEAS 196 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p---~~~v~~vD~s~~~l~~a--~~~~~~----~~~~~v~~~~~d~~~~~--~~~~ 196 (357)
.++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +.++.. .+.+...+...|+.... ...+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4578999999999999999998764 35799999999999999 555543 23333455666665532 1268
Q ss_pred ccEEEEcccccch---h--------------------------hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHM---K--------------------------NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~---~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|++|+|+... + ....+++.+.+.|+|||++.+..|..-
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 9999999999321 0 133478889999999999999888653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-10 Score=100.60 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=72.6
Q ss_pred HHHHcCCCCC--CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C-C-CCeEEEEeccC
Q 018346 121 YCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L-QNVEIIVADIS 189 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~-~-~~v~~~~~d~~ 189 (357)
+++.+++.++ .+|||+|||+|..++.++.. +++|+++|+|+.+.+.++++++.. + + ++++++++|..
T Consensus 78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~ 155 (258)
T 2oyr_A 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (258)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence 4455566667 89999999999999999988 678999999998877776665432 2 3 37999999987
Q ss_pred CCc--cccCccEEEEcccccchhhHHHHHHHHHHhcccC
Q 018346 190 TFE--MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 190 ~~~--~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg 226 (357)
+.. .+++||+|++++++.+-. ....+++..+.|++.
T Consensus 156 ~~L~~~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~l 193 (258)
T 2oyr_A 156 TALTDITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQSL 193 (258)
T ss_dssp HHSTTCSSCCSEEEECCCCCCCC-C-----HHHHHHHHH
T ss_pred HHHHhCcccCCEEEEcCCCCCcc-cchHHHHHHHHHHHh
Confidence 632 125799999999996642 123344444444443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-10 Score=99.05 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA- 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~- 195 (357)
..+.+++.+.+.++.+|||||||+|.++. ++ ..+..+|+++|+|+.+++.++++.... ++++++++|+.+++++.
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHh
Confidence 55667777778888999999999999999 65 432223999999999999998876543 38999999998875432
Q ss_pred -----CccEEEEccccc
Q 018346 196 -----SYDRIYSIEMFE 207 (357)
Q Consensus 196 -----~fD~Ii~~~~~~ 207 (357)
..|.|++|.++.
T Consensus 85 ~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHTSCEEEEEECCTT
T ss_pred hcccCCceEEEECCCCC
Confidence 347899999875
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-09 Score=103.98 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCC----CCCCEEEEECCcccHHHHHH---HHHC-CCcEEEEEcCCHHHHHHHHHHHH
Q 018346 103 FSDASKTLEDAEKAMLELYCERSRL----EDGHTVLDVGCGWGSLSLYI---AQKY-SNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 103 f~~~~~~l~~~~~~~l~~l~~~~~~----~~~~~vLDiGcG~G~~~~~l---a~~~-p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
|+.+.......++++...+.++... ..+..|||+|||+|.++... +++. -..+|++||-|+. ...|++..+
T Consensus 327 FEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~ 405 (637)
T 4gqb_A 327 FEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQ 405 (637)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHH
T ss_pred hcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHH
Confidence 4443344455555566555554322 23467999999999984443 4332 1237899999985 557888888
Q ss_pred HcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEE
Q 018346 175 VLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 175 ~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.++.+ +|+++++|++++..++++|+|||-.+=..+ +.....+....+.|||||.++
T Consensus 406 ~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 406 FEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred hccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 88874 899999999998777899999986532111 233467777789999999863
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-09 Score=92.95 Aligned_cols=83 Identities=8% Similarity=0.097 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--E 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~ 194 (357)
+++.+++.+.+.++..++|.+||.|+.+..+++. +.+|+|+|.++.+++.|++ +.. ++++++++|+.++.. .
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHH
Confidence 4556677777888899999999999999999987 7899999999999999988 543 489999999988632 1
Q ss_pred ----cCccEEEEccc
Q 018346 195 ----ASYDRIYSIEM 205 (357)
Q Consensus 195 ----~~fD~Ii~~~~ 205 (357)
+++|.|+++..
T Consensus 84 ~~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 84 ALGVERVDGILADLG 98 (285)
T ss_dssp HTTCSCEEEEEEECS
T ss_pred HcCCCCcCEEEeCCc
Confidence 46999998653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=85.28 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCC--------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTF-------------- 191 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~-------------- 191 (357)
+..+|||+||| ..++.+++. ++.+|+.+|.+++..+.|+++++..|+ ++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 56799999985 677888864 478999999999999999999999885 4899999996542
Q ss_pred -c--------cc--cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 192 -E--------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 192 -~--------~~--~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+ .. ++||+|+...-.. ...+..+.+.|+|||++++..
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRFR-----VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSSH-----HHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCCc-----hhHHHHHHHhcCCCeEEEEeC
Confidence 1 12 6799999987532 355666779999999997743
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-09 Score=92.28 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=86.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--C---CCCeEEEEeccCCCccc--cCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEME--ASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~---~~~v~~~~~d~~~~~~~--~~fD~I 200 (357)
+++++||-||.|.|..+..+++..|..+|+.+||++..++.+++.+... + -++++++.+|...+... ++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998766679999999999999999987542 2 24899999999886432 789999
Q ss_pred EEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 201 YSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 201 i~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++...-..- -...++++.+.+.|+|||+++....++
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 987532111 123678999999999999999876554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=101.13 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC-------------CCcEEEEEcCCHHHHHHHHHHHHHcC
Q 018346 112 DAEKAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-------------SNCKITGICNSKTQKEFIEEQCRVLE 177 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-------------p~~~v~~vD~s~~~l~~a~~~~~~~~ 177 (357)
..+.++...+.++... ..+..|||+|||+|.++...+... ...+|++||.|+.++...+.... ++
T Consensus 391 ~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng 469 (745)
T 3ua3_A 391 VYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT 469 (745)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC
Confidence 3344444443333321 235689999999999975432211 13499999999987766555544 66
Q ss_pred CC-CeEEEEeccCCCcc------ccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEE
Q 018346 178 LQ-NVEIIVADISTFEM------EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 178 ~~-~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.. +|+++.+|++++.. +++.|+|||-..=... +-..+.+..+.+.|||||.++
T Consensus 470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 64 79999999999765 5789999997652211 234567777889999999754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=93.83 Aligned_cols=113 Identities=15% Similarity=0.029 Sum_probs=91.3
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC------CCeEEEEeccCCCcc--cc
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEM--EA 195 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~--~~ 195 (357)
.++..+|.+|||+++|.|+-+..++...++..|+++|+|+.-+...++++...+. .++.+...|...++. .+
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 3567899999999999999999999887667899999999999999999988764 368888888876532 26
Q ss_pred CccEEEEcccccch------------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHM------------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.||.|++..+-..- .-..+++..+.+.|||||+|+.++-+.
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 89999987764320 013578899999999999998877654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-09 Score=93.52 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
++.++.++..+.++.+|||||||.|..+..+++..+...|+|+|++.+........ ...+. ++..+..++....+. +
T Consensus 62 KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 62 KLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCCC
T ss_pred HHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCCC
Confidence 55566666666788899999999999999988765455788899874421000000 00111 445566655433333 6
Q ss_pred CccEEEEccccc----chhhHH--HHHHHHHHhcccC-ceEEEEecc
Q 018346 196 SYDRIYSIEMFE----HMKNYQ--NLLKKISKWMKED-TLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~----~~~~~~--~~l~~~~~~Lkpg-G~l~~~~~~ 235 (357)
+||+|+|....+ ..+... .+++.+.++|+|| |.+++..+.
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 899999988665 222222 3578889999999 999998886
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.73 E-value=7e-08 Score=89.90 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCC-----CCEEEEECCcccHHHHHHH--------HHC-------CCcEEEEEcCCHHHHHHHHHHHH
Q 018346 115 KAMLELYCERSRLED-----GHTVLDVGCGWGSLSLYIA--------QKY-------SNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~la--------~~~-------p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
..+++..++.+.... +.+|+|+|||+|..+..+. +++ |..+|...|+........-+.+.
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 455565666555543 5789999999999988872 222 56789999987765544433332
Q ss_pred HcC-----------C-CCeEEEEeccCC---Cccc-cCccEEEEcccccchh----------------------------
Q 018346 175 VLE-----------L-QNVEIIVADIST---FEME-ASYDRIYSIEMFEHMK---------------------------- 210 (357)
Q Consensus 175 ~~~-----------~-~~v~~~~~d~~~---~~~~-~~fD~Ii~~~~~~~~~---------------------------- 210 (357)
... . .+-.|+.+.... -.++ +++|+|+|+.++||+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 210 0 011234433322 2233 8899999999999984
Q ss_pred ----------hHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 211 ----------NYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 211 ----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
|...+++...+.|+|||++++...+..+.
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~ 231 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSV 231 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 45567888899999999999999987653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=91.79 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-------------CcEEEEEcCCHHHHHHHHHHHHHcCCCCeE
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-------------NCKITGICNSKTQKEFIEEQCRVLELQNVE 182 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~ 182 (357)
.+.+.+++.+...++.+|+|-+||+|++...+.+... ...++|+|+++.+...|+.|+.-.|.+...
T Consensus 204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 3445566667777888999999999999887765321 246999999999999999999888886667
Q ss_pred EEEeccCCCccc-----cCccEEEEcccccch----------------hhHHHHHHHHHHhcc-------cCceEEEEec
Q 018346 183 IIVADISTFEME-----ASYDRIYSIEMFEHM----------------KNYQNLLKKISKWMK-------EDTLLFVHHF 234 (357)
Q Consensus 183 ~~~~d~~~~~~~-----~~fD~Ii~~~~~~~~----------------~~~~~~l~~~~~~Lk-------pgG~l~~~~~ 234 (357)
+..+|....+.. .+||+|++|+|+..- .....++..+.+.|| |||++.+..|
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 778887654321 579999999999421 112346777888886 7999999888
Q ss_pred cC
Q 018346 235 CH 236 (357)
Q Consensus 235 ~~ 236 (357)
..
T Consensus 364 ~g 365 (530)
T 3ufb_A 364 NG 365 (530)
T ss_dssp HH
T ss_pred ch
Confidence 64
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-08 Score=89.75 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe--ccCCCccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~--d~~~~~~~ 194 (357)
++.++.++..+.++.+|||||||.|.++..+++..+...|+|+|++..+...+.. ....+. ++..... |+..++ .
T Consensus 78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~~l~-~ 154 (282)
T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVFNME-V 154 (282)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGGGSC-C
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchhhcC-C
Confidence 5566667767788889999999999999998876655689999998653211111 000111 3333443 333332 2
Q ss_pred cCccEEEEccccc----chhhHH--HHHHHHHHhcccC--ceEEEEecc
Q 018346 195 ASYDRIYSIEMFE----HMKNYQ--NLLKKISKWMKED--TLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~----~~~~~~--~~l~~~~~~Lkpg--G~l~~~~~~ 235 (357)
.++|+|+|..... .++... .+++-+.++|+|| |.+++-.+.
T Consensus 155 ~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 155 IPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 6899999988765 222222 3577788999999 999998886
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.3e-08 Score=86.95 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
+++++++.+.+.++..++|..||.|+.+..+++.. |..+|+|+|.++.+++.|+ ++ ..++++++++++.++..
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L 120 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYV 120 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHH
Confidence 56778888888899999999999999999999885 6789999999999999884 33 22489999999887531
Q ss_pred -c----cCccEEEEcccc
Q 018346 194 -E----ASYDRIYSIEMF 206 (357)
Q Consensus 194 -~----~~fD~Ii~~~~~ 206 (357)
. +++|.|+.+..+
T Consensus 121 ~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 121 AERDLIGKIDGILLDLGV 138 (347)
T ss_dssp HHTTCTTCEEEEEEECSC
T ss_pred HhcCCCCcccEEEECCcc
Confidence 1 258999987643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=74.30 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCccc-HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWG-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G-~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
+.+.+.+.. .++.+|||||||+| ..+..|+++. +..|+++|+|+.+++ +++.|+++....
T Consensus 25 LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------------~v~dDiF~P~~~~ 86 (153)
T 2k4m_A 25 LAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------------IVRDDITSPRMEI 86 (153)
T ss_dssp HHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------------EECCCSSSCCHHH
T ss_pred HHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------------eEEccCCCCcccc
Confidence 444444443 34679999999999 6999999853 889999999998544 788999885443
Q ss_pred -cCccEEEE-cccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 195 -ASYDRIYS-IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 195 -~~fD~Ii~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
..||+|.+ +++-+- ...+-++.+. -|.-+++...+.+.
T Consensus 87 Y~~~DLIYsirPP~El----~~~i~~lA~~--v~adliI~pL~~E~ 126 (153)
T 2k4m_A 87 YRGAALIYSIRPPAEI----HSSLMRVADA--VGARLIIKPLTGED 126 (153)
T ss_dssp HTTEEEEEEESCCTTT----HHHHHHHHHH--HTCEEEEECBTTBC
T ss_pred cCCcCEEEEcCCCHHH----HHHHHHHHHH--cCCCEEEEcCCCCc
Confidence 58999965 444432 2333333332 35677776555443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=86.80 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=75.6
Q ss_pred CCEEEEECCcccHHHHHHHHH-----------------CCCcEEEEEcCC-----------HHHHHHHHHHHHHcCC-CC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQK-----------------YSNCKITGICNS-----------KTQKEFIEEQCRVLEL-QN 180 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~-----------------~p~~~v~~vD~s-----------~~~l~~a~~~~~~~~~-~~ 180 (357)
..+|+|+|||+|..+..+... .|..+|+..|+. +...+.+++ ..|. .+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 578999999999999887765 356789999987 433332211 2222 13
Q ss_pred eEEEEeccCCC---ccc-cCccEEEEcccccchhhHH---------------------------------------HHHH
Q 018346 181 VEIIVADISTF---EME-ASYDRIYSIEMFEHMKNYQ---------------------------------------NLLK 217 (357)
Q Consensus 181 v~~~~~d~~~~---~~~-~~fD~Ii~~~~~~~~~~~~---------------------------------------~~l~ 217 (357)
..|+.+....+ .++ +++|+|+|+.++||+.+.+ .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777665442 333 8899999999999973221 2256
Q ss_pred HHHHhcccCceEEEEeccCCCC
Q 018346 218 KISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 218 ~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
.-.+.|+|||++++...+..+.
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHhccCCeEEEEEecCCCc
Confidence 6689999999999999988764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-07 Score=81.30 Aligned_cols=118 Identities=8% Similarity=0.024 Sum_probs=87.5
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCH-------------------------
Q 018346 115 KAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSK------------------------- 163 (357)
Q Consensus 115 ~~~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~------------------------- 163 (357)
...+..+++.+. ...+.+|||+||..|..++.++... ++.+|+++|...
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~ 170 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL 170 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence 334444444332 2345699999999999999987654 477899999642
Q ss_pred -HHHHHHHHHHHHcCC--CCeEEEEeccCCCcc---ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 164 -TQKEFIEEQCRVLEL--QNVEIIVADISTFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 164 -~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..++.++++++..|+ ++|+++.+|+.+... .++||+|+...-. .......++.+.+.|+|||++++...
T Consensus 171 ~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 171 AVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred hhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 146778999999987 589999999876321 2679999998642 23456789999999999999988554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=82.07 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=72.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHH-------CCC-----cEEEEEcCCH---HHHH-----------HHHHHHHH------
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQK-------YSN-----CKITGICNSK---TQKE-----------FIEEQCRV------ 175 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~-------~p~-----~~v~~vD~s~---~~l~-----------~a~~~~~~------ 175 (357)
.++.+|||+|||+|..+..+++. .|. .+++++|..| +.+. .|+++...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35579999999999998887654 563 5899999876 4333 55555543
Q ss_pred ------c--CCCCeEEEEeccCCC-cc-cc----CccEEEEccccc-chhh--HHHHHHHHHHhcccCceEEE
Q 018346 176 ------L--ELQNVEIIVADISTF-EM-EA----SYDRIYSIEMFE-HMKN--YQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 176 ------~--~~~~v~~~~~d~~~~-~~-~~----~fD~Ii~~~~~~-~~~~--~~~~l~~~~~~LkpgG~l~~ 231 (357)
. +..+++++.+|+.+. +. +. .||+|+..+.-. .-++ ...+++.+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1 113688999998763 21 12 799999975211 1122 46799999999999999875
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-07 Score=82.96 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=80.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-----C---CCCeEEEEeccCCCcc----c-
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----E---LQNVEIIVADISTFEM----E- 194 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-----~---~~~v~~~~~d~~~~~~----~- 194 (357)
.++++||-||.|.|..+..+.+. |..+|+.|||++..++.+++.+... . .++++++.+|...+.. .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999875 5689999999999999999875321 1 1258999999876431 1
Q ss_pred cCccEEEEccccc-------c---hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFE-------H---MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~-------~---~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++||+|+....-. . ....+++++.+.+.|+|||+++...-
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 5799999874211 1 12246789999999999999988643
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.8e-07 Score=82.65 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=79.9
Q ss_pred CCCEEEEECCcccHHHHHHHHH----------------CCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCC-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK----------------YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST- 190 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~----------------~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~- 190 (357)
...+|+|+||++|..+..+... .|..+|+..|+.......+-+.+..... ++..|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4478999999999876654332 3567999999988887777665543110 133555555433
Q ss_pred --Cccc-cCccEEEEcccccchhh---------------------------------HHHHHHHHHHhcccCceEEEEec
Q 018346 191 --FEME-ASYDRIYSIEMFEHMKN---------------------------------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 191 --~~~~-~~fD~Ii~~~~~~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
-.++ +++|+|+|+.++||+.. ...+++.-.+.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 2334 88999999999998732 33458888999999999999999
Q ss_pred cCCCC
Q 018346 235 CHKTF 239 (357)
Q Consensus 235 ~~~~~ 239 (357)
+..+.
T Consensus 211 gr~~~ 215 (359)
T 1m6e_X 211 GRRSE 215 (359)
T ss_dssp ECSSS
T ss_pred cCCCC
Confidence 88764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.7e-07 Score=78.94 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe--ccCCCccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DISTFEME 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~--d~~~~~~~ 194 (357)
++.++.+..-+.++.+|||+||++|.++..+++..+...|+|+|++..+...... ....+. ++..... |+..+. .
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~-~ 145 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMP-T 145 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSC-C
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecC-C
Confidence 3444555533467899999999999999999976545589999997542100000 000011 2333333 333322 2
Q ss_pred cCccEEEEccccc----chhhH--HHHHHHHHHhcccC-ceEEEEecc
Q 018346 195 ASYDRIYSIEMFE----HMKNY--QNLLKKISKWMKED-TLLFVHHFC 235 (357)
Q Consensus 195 ~~fD~Ii~~~~~~----~~~~~--~~~l~~~~~~Lkpg-G~l~~~~~~ 235 (357)
.++|+|+|...-+ .++.. ..++.-+.++|+|| |.+++-.+.
T Consensus 146 ~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 146 EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 6899999987655 12221 34577788999999 999998886
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=75.07 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~~~ 194 (357)
.++.++.++..+.++.+|||+||+.|..+.+.+......+|+|+|+-..-.+. -......|.+.|+|.++ |+...+.
T Consensus 65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~- 142 (267)
T 3p8z_A 65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP- 142 (267)
T ss_dssp HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-
Confidence 35667777777788999999999999999988877644579999987652210 00112234457999999 9876543
Q ss_pred cCccEEEEcccccch-h--h---HHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 195 ASYDRIYSIEMFEHM-K--N---YQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~-~--~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.++|.|+|...=..- + + ..++++.+.+.|++ |.+++-++++..
T Consensus 143 ~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 143 EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 679999997532111 1 1 12367777899998 788888776654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-06 Score=72.88 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~~~ 194 (357)
.++.++.++..+.++.+||||||++|..+.+.+......+|+|+|+...-.+.= ......+-+-|.|..+ |+..+++
T Consensus 81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~- 158 (321)
T 3lkz_A 81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS- 158 (321)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC-
Confidence 456677777777888899999999999999888765344799999976511000 0001112224788887 8877654
Q ss_pred cCccEEEEcccccchhh-------HHHHHHHHHHhcccC-ceEEEEeccC
Q 018346 195 ASYDRIYSIEMFEHMKN-------YQNLLKKISKWMKED-TLLFVHHFCH 236 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~-------~~~~l~~~~~~Lkpg-G~l~~~~~~~ 236 (357)
.++|+|+|.-. +.-++ ..++|+.+.+.|++| |-+++-++++
T Consensus 159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999999765 32211 123677778999999 8999988876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.4e-06 Score=76.94 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
+.+|.+|||+||+.|+.+..++++ +.+|++||+.+-. ..+.. .++|+++++|.....++ .++|+|+|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~-----~~l~~--~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMA-----QSLMD--TGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCC-----HHHHT--TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcC-----hhhcc--CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 468999999999999999999988 7899999987531 12222 24899999999887655 67999999876
Q ss_pred ccchhhHHHHHHHHHHhcccC
Q 018346 206 FEHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~Lkpg 226 (357)
.. +...+..+.+.|..+
T Consensus 280 ~~----p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 280 EK----PAKVAALMAQWLVNG 296 (375)
T ss_dssp SC----HHHHHHHHHHHHHTT
T ss_pred CC----hHHhHHHHHHHHhcc
Confidence 53 344445555544443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=75.05 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCeEEEEe-ccCCCcc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVA-DISTFEM 193 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-~~~~~v~~~~~-d~~~~~~ 193 (357)
.++.++.++.-+.++.+|||+||+.|..+..+++..+-..|.|.++.... . ....... .|..=+.|.++ |+.++.
T Consensus 60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~- 136 (269)
T 2px2_A 60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKP- 136 (269)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSC-
T ss_pred HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCC-
Confidence 35566666655678999999999999999999876211233444433220 0 0000000 11111355557 998754
Q ss_pred ccCccEEEEccccc-ch--hhHH---HHHHHHHHhcccCc-eEEEEecc
Q 018346 194 EASYDRIYSIEMFE-HM--KNYQ---NLLKKISKWMKEDT-LLFVHHFC 235 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~-~~--~~~~---~~l~~~~~~LkpgG-~l~~~~~~ 235 (357)
+.++|+|+|...-. .. -|.. .+++-+.++|+||| .+++-.+.
T Consensus 137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 137 SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 25799999976322 11 1111 25777789999999 99998887
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=72.30 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.++..+++... .++..|||++||+|..+..++.. +.+++|+|+++.+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35556666554 57889999999999999998876 789999999999999999998765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.83 E-value=7.3e-06 Score=72.68 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=81.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----ccccCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~Ii~~ 203 (357)
.+..+||+-+|||.+++.+.+. +.+++.+|.++..++..++|+.. .++++++..|.... +...+||+|++.
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiD 166 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFID 166 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEEC
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEEC
Confidence 3567999999999999998873 68999999999999999888865 24799999997552 122479999999
Q ss_pred ccccchhhHHHHHHHHHH--hcccCceEEEEecc
Q 018346 204 EMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFC 235 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~ 235 (357)
++++.-.++.++++.+.+ .+.|+|++++=.|.
T Consensus 167 PPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi 200 (283)
T 2oo3_A 167 PSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPV 200 (283)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEec
Confidence 999855567777777765 46799998885543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00014 Score=64.23 Aligned_cols=108 Identities=13% Similarity=0.055 Sum_probs=74.7
Q ss_pred HHHHHHHHc-----CCCCCCEEEEECC------cccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEE
Q 018346 117 MLELYCERS-----RLEDGHTVLDVGC------GWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEII 184 (357)
Q Consensus 117 ~l~~l~~~~-----~~~~~~~vLDiGc------G~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~ 184 (357)
.+..++..+ ..+.+.+|||+|+ ..|. ..+.+..|. +.|+++|+.+-.. ..+ .++
T Consensus 92 kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~-~~I 157 (344)
T 3r24_A 92 KYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD-STL 157 (344)
T ss_dssp HHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS-EEE
T ss_pred HHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC-eEE
Confidence 455555544 3457899999996 5566 344555675 6999999987520 113 559
Q ss_pred EeccCCCccccCccEEEEcccccc-----------hhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 185 VADISTFEMEASYDRIYSIEMFEH-----------MKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 185 ~~d~~~~~~~~~fD~Ii~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
++|........+||+|+|...-.. +.-.+.+++-+.+.|+|||.+++-++....
T Consensus 158 qGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 158 IGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp ESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 999876544478999999763211 112566788889999999999999886655
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.74 E-value=7.2e-05 Score=68.97 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCC------CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC
Q 018346 116 AMLELYCERSRLED------GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189 (357)
Q Consensus 116 ~~l~~l~~~~~~~~------~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~ 189 (357)
..++.+++.+++.+ +..|||||.|.|.++..|++.....+|+++|+++..+...++.. . .++++++.+|+.
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l 115 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPY 115 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTT
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCcc
Confidence 35566777766653 58999999999999999998643468999999999998888766 2 248999999997
Q ss_pred CC
Q 018346 190 TF 191 (357)
Q Consensus 190 ~~ 191 (357)
++
T Consensus 116 ~~ 117 (353)
T 1i4w_A 116 DW 117 (353)
T ss_dssp CH
T ss_pred ch
Confidence 65
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=64.46 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 177 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~ 177 (357)
.+++.+++... .++..|||..||+|..+....+. +.+++|+|+++.+++.|++++...+
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 35555665543 57889999999999999998876 7899999999999999999987654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=8.3e-05 Score=84.84 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCC-----CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-c-cccCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYS-----NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E-MEASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~Ii 201 (357)
+..+|||||.|+|..+..+.+... ..+++.+|+|+...+.|+++++.. ++..-..|..+. + .+.+||+|+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---di~~~~~d~~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---HVTQGQWDPANPAPGSLGKADLLV 1316 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---TEEEECCCSSCCCC-----CCEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---ccccccccccccccCCCCceeEEE
Confidence 567999999999988777665542 237899999998888888777653 333322233321 1 126799999
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+..++|..++....+.+++++|||||.+++....
T Consensus 1317 a~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1317 CNCALATLGDPAVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp EECC--------------------CCEEEEEEC-
T ss_pred EcccccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999988888899999999999999999886543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.012 Score=53.73 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC---------------------CCCeEEEEec
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------------------LQNVEIIVAD 187 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~---------------------~~~v~~~~~d 187 (357)
+...|+.+|||.......+....++..++-+|. |+.++.-++.+...+ .++..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 567999999999999999988767888999998 888887777766541 1478999999
Q ss_pred cCCCcc---------c-cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 188 ISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 188 ~~~~~~---------~-~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+.+... . +...++++-.++.++ +...++++.+.+.. |+|.+++...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 987321 1 346789999999998 45677888888877 6777654433
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0056 Score=56.99 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=57.0
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------ccCccEE
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------EASYDRI 200 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~I 200 (357)
.+++|+.||.|.++..+... +.+ |.++|+++.+++..+.|.. +..++++|+.++.. ...+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999887 554 6699999998887777642 56778899887632 2469999
Q ss_pred EEcccccch
Q 018346 201 YSIEMFEHM 209 (357)
Q Consensus 201 i~~~~~~~~ 209 (357)
+..++-+.+
T Consensus 76 ~ggpPCQ~f 84 (376)
T 3g7u_A 76 IGGPPCQGF 84 (376)
T ss_dssp EECCCCCTT
T ss_pred EecCCCCCc
Confidence 998885444
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=60.27 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~~~ 204 (357)
..+|+|+.||.|.++..+....-.. .|.++|+++.+++..+.|.. +..++.+|+.++... ..+|+|+..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 3589999999999999998873113 68999999999988888763 345678898876432 2699999999
Q ss_pred cccch
Q 018346 205 MFEHM 209 (357)
Q Consensus 205 ~~~~~ 209 (357)
+.+.+
T Consensus 77 PCq~f 81 (343)
T 1g55_A 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred CCcch
Confidence 85544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0029 Score=57.73 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEcccc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 206 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~ 206 (357)
+.+++|+.||.|.++..+... +. .|.++|+++.+++..+.|.... . .+|+.++... ..+|+|+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~---~----~~Di~~~~~~~~~~~D~l~~gpPC 81 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK---P----EGDITQVNEKTIPDHDILCAGFPC 81 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC---C----BSCGGGSCGGGSCCCSEEEEECCC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC---C----cCCHHHcCHhhCCCCCEEEECCCC
Confidence 579999999999999999877 45 5778999999998888886422 1 5788776432 469999999877
Q ss_pred cch
Q 018346 207 EHM 209 (357)
Q Consensus 207 ~~~ 209 (357)
+.+
T Consensus 82 Q~f 84 (327)
T 2c7p_A 82 QAF 84 (327)
T ss_dssp TTT
T ss_pred CCc
Confidence 554
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0058 Score=57.61 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=53.2
Q ss_pred CCCCCEEEEECCcccHHHHHHH-HHCCC-cEEEEEcCCHHHHHHHHHHHHH---cCC-CCeEEEEeccCC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIA-QKYSN-CKITGICNSKTQKEFIEEQCRV---LEL-QNVEIIVADIST 190 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la-~~~p~-~~v~~vD~s~~~l~~a~~~~~~---~~~-~~v~~~~~d~~~ 190 (357)
+.++..|+|+|++.|..+..++ +..+. .+|+++|++|...+..+++++. ++. ++++++..-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 4688999999999999999988 55543 7999999999999999999987 345 588887766554
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.008 Score=56.34 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=68.3
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-c------c
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-E------M 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~------~ 193 (357)
+...+.++.+||-+|||. |..+..+++.. ++ +|+++|.|++.++.+++ .|. +.+..+-.+. . .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSD----AGF---ETIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHT----TTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----cCC---cEEcCCCcchHHHHHHHHh
Confidence 556788999999999986 88888888876 66 99999999987766543 443 2332211111 1 0
Q ss_pred c-cCccEEEEcccccch--------hhHHHHHHHHHHhcccCceEEEE
Q 018346 194 E-ASYDRIYSIEMFEHM--------KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. ..+|+|+-...-... ......++.+.++|+|||++++.
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 1 269999865442210 01234678888999999998764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.012 Score=54.49 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=67.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------
Q 018346 121 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------ 192 (357)
+.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++..+-.++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGATH--VINSKTQDPVAAIKEI 254 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCCE--EecCCccCHHHHHHHh
Confidence 33556778899999999986 78888888876 66 79999999998777654 34421 2221111110
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+.+|+|+-...- ...++.+.+.|+|+|++++.
T Consensus 255 ~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 255 TDGGVNFALESTGS------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp TTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEe
Confidence 01368998865432 34678888999999998774
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0056 Score=56.24 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=67.7
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEE
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 200 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 200 (357)
+....+.++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.+++ .|.+.+ + .|...+ ...+|+|
T Consensus 169 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~~--~~~~D~v 238 (348)
T 3two_A 169 LKFSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQC--KEELDFI 238 (348)
T ss_dssp HHHTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCSEE--E-SSGGGC--CSCEEEE
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCCee--c-CCHHHH--hcCCCEE
Confidence 3456788999999999975 78888888876 7899999999988776654 555322 2 333222 1379999
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+-...-. ..+..+.++|+|+|++++.
T Consensus 239 id~~g~~------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 239 ISTIPTH------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EECCCSC------CCHHHHHTTEEEEEEEEEC
T ss_pred EECCCcH------HHHHHHHHHHhcCCEEEEE
Confidence 8654322 2456778899999998875
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.016 Score=54.24 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=69.2
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc------c
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE------M 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~------~ 193 (357)
....+.++.+||-+|||. |..+..+++.. ++ +|+++|.|++.++.+++ .|. +.+..+-.+ +. .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~----lGa---~~i~~~~~~~~~~~v~~~t 250 (398)
T 1kol_A 179 VTAGVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA----QGF---EIADLSLDTPLHEQIAALL 250 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTC---EEEETTSSSCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHH----cCC---cEEccCCcchHHHHHHHHh
Confidence 356778899999999875 88888899887 66 89999999998776654 454 222211111 10 0
Q ss_pred c-cCccEEEEccccc---------chhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 E-ASYDRIYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. ..+|+|+-...-. +.++....++.+.++|++||++++.
T Consensus 251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 1 3699998654321 1223345788889999999998764
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.03 Score=50.57 Aligned_cols=103 Identities=7% Similarity=0.039 Sum_probs=77.7
Q ss_pred CCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCCccc----------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEME----------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~----------~ 195 (357)
...|++||||-=.-+..+. .| +..|+-+| .|..++..++.+...+. ++..++.+|+.+ ... .
T Consensus 103 ~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 3579999999877655544 23 47999999 49999998888875432 378899999986 211 2
Q ss_pred CccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..=++++-.+++++ +....+++.+...+.||+.+++...+.
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 23478888899998 456778999999889999999987654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.016 Score=53.02 Aligned_cols=96 Identities=7% Similarity=0.116 Sum_probs=68.0
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
++...+.++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.+++ .|.+. .+ |..+...
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~i--~~~~~~~~~~~~~~ 229 (340)
T 3s2e_A 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEV--AV--NARDTDPAAWLQKE 229 (340)
T ss_dssp HHTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSE--EE--ETTTSCHHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCE--EE--eCCCcCHHHHHHHh
Confidence 3556778899999999975 88899999887 7899999999998776644 45431 12 2222111
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+.... ....++.+.++|+|+|++++.
T Consensus 230 ~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 230 IGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence 136888876532 135678888999999998874
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.018 Score=53.00 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=66.7
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec---cCCCc---c-
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---ISTFE---M- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d---~~~~~---~- 193 (357)
+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.+ .++..+ ..+.. .
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKE----IGAD--LVLQISKESPQEIARKVEG 237 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH----TTCS--EEEECSSCCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCC--EEEcCcccccchHHHHHHH
Confidence 556778899999999975 78888888876 67 99999999987766643 4543 222211 01100 0
Q ss_pred --ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+-...- ...+..+.++|+|||++++.
T Consensus 238 ~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 238 QLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEE
Confidence 1369999865432 34567788999999998774
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=50.77 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=72.3
Q ss_pred CCEEEEECCcccHHHHHHHHH-------CCCcEEEEEc-----CCHH----------------------HHHHHHH---H
Q 018346 130 GHTVLDVGCGWGSLSLYIAQK-------YSNCKITGIC-----NSKT----------------------QKEFIEE---Q 172 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~-------~p~~~v~~vD-----~s~~----------------------~l~~a~~---~ 172 (357)
+..|+|+||-.|..+..++.. .+..+|++.| +.+. .+....+ +
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 358999999999988886642 2467999999 3221 1111111 1
Q ss_pred HHHcCC--CCeEEEEeccCCCcc------c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 173 CRVLEL--QNVEIIVADISTFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 173 ~~~~~~--~~v~~~~~d~~~~~~------~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
.+..+. ++|+++.+++.+..+ + .++|+|....-. -......++.+...|+|||++++...+.+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~~ 221 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDNP 221 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTCT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 112333 589999999876421 1 469999988742 34556788999999999999999876543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.04 Score=51.02 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=67.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. .+ |..+..
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEE----VGATA--TV--DPSAGDVVEAIAGP 246 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCSE--EE--CTTSSCHHHHHHST
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCCE--EE--CCCCcCHHHHHHhh
Confidence 566788999999999875 77888888876 66 99999999997776654 45431 11 211110
Q ss_pred --c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 --M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 --~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. .+.+|+|+-...- ...++.+.++|++||++++.-
T Consensus 247 ~~~~~gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 247 VGLVPGGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TSSSTTCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred hhccCCCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence 1 1369999865321 346788889999999988743
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.024 Score=52.07 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=66.5
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc-CCCc------c-
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE------M- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~~~------~- 193 (357)
+..++.++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.++ ..|.+ ..+..+- .+.. .
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~--~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK----NCGAD--VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH----HTTCS--EEEECCTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH----HhCCC--EEEcCcccccHHHHHHHHhc
Confidence 556778899999999874 77888888876 788999999998776665 34553 1222110 1111 0
Q ss_pred ---ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+....- ...++.+.++|+|+|+++..
T Consensus 235 ~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 235 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 1359999875432 23567788999999998774
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00095 Score=60.94 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~ 178 (357)
++..++... ..++..|||..||+|..+....+. +.+.+|+|+++..++.+++++...+.
T Consensus 241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 444455443 357889999999999999988776 78999999999999999998765543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.017 Score=53.31 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=68.4
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEE-----eccCC-C---
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIV-----ADIST-F--- 191 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-----~d~~~-~--- 191 (357)
+..++.++.+||-+|+|. |..+..+++.. +++ |+++|.|++.++.+++. ... -+.+.. .|+.+ +
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~---~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPE---VVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTT---CEEEECCSCCHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chh---cccccccccchHHHHHHHHHH
Confidence 566788999999999875 78888888886 776 99999999988888764 211 222221 11111 0
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.....+|+|+-...- ...+..+.++|++||++++.-
T Consensus 248 t~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 248 FGGIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp TSSCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECC
T ss_pred hCCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEc
Confidence 001469999875431 345778889999999988753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.041 Score=45.81 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+...+.++.+||..|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ . . .|..+...
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~-~--~d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGVE-Y-V--GDSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCCS-E-E--EETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-E-E--eeCCcHHHHHHHHHH
Confidence 3456778999999994 4566666666554 7899999999887655532 3432 1 1 23322110
Q ss_pred --ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 --EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+.+.. ...++.+.+.|+|||++++.
T Consensus 103 ~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 103 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 135999987643 14577888999999998774
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.029 Score=50.96 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=55.3
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
.+|+|+-||.|+++..+.+. |.+ +.++|+++.+.+.-+.|. .-.++.+|+.++... ...|+++..++-+
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHC------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 47999999999999988876 554 569999999887777764 235688999887543 5799999888664
Q ss_pred ch
Q 018346 208 HM 209 (357)
Q Consensus 208 ~~ 209 (357)
.+
T Consensus 73 ~f 74 (331)
T 3ubt_Y 73 SW 74 (331)
T ss_dssp GT
T ss_pred Cc
Confidence 43
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.018 Score=51.64 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=57.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcE---EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-----cCccE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCK---ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDR 199 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~---v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~ 199 (357)
....+++|+.||.|+++..+... +.+ |.++|+++.+.+..+.|.. ...+..+|+.++... ..+|+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dl 86 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDL 86 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCE
Confidence 35679999999999999998876 443 5899999998877666642 446788999886432 36999
Q ss_pred EEEcccccch
Q 018346 200 IYSIEMFEHM 209 (357)
Q Consensus 200 Ii~~~~~~~~ 209 (357)
++..++-+.+
T Consensus 87 l~ggpPCQ~f 96 (295)
T 2qrv_A 87 VIGGSPCNDL 96 (295)
T ss_dssp EEECCCCGGG
T ss_pred EEecCCCccc
Confidence 9998866543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=55.71 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=43.2
Q ss_pred CCeEEEEeccCCCc--c-ccCccEEEEcccccch--------------------hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 179 QNVEIIVADISTFE--M-EASYDRIYSIEMFEHM--------------------KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 179 ~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+++++++|..+.. . .++||+|++++++... ..+..+++++.++|||||.+++.+..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 36889999987632 2 2689999999998532 12356788999999999999997653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.016 Score=52.62 Aligned_cols=58 Identities=16% Similarity=-0.023 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCH---HHHHHHHHHHHHcC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLE 177 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~---~~l~~a~~~~~~~~ 177 (357)
+++.++... ..++..|||.-||+|..+...... +.+.+|+|+++ ..++.+++++...+
T Consensus 231 l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 231 VIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 455555544 357889999999999999998887 78999999999 99999999887654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.021 Score=51.59 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEE
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 201 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii 201 (357)
+...+.++.+||-+|+| .|..+..+++.. +++|++++ |++.++.+++ .|.+ .+..|...+ ...+|+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~d~~~v--~~g~Dvv~ 204 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR---HLYREPSQV--TQKYFAIF 204 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE---EEESSGGGC--CSCEEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC---EEEcCHHHh--CCCccEEE
Confidence 56677899999999996 478888888876 78999999 8887777654 3432 222242222 35799888
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
-...- ..+..+.++|+|+|+++..
T Consensus 205 d~~g~-------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 DAVNS-------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp CC--------------TTGGGEEEEEEEEEE
T ss_pred ECCCc-------hhHHHHHHHhcCCCEEEEE
Confidence 54321 1225567899999998875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.03 Score=51.12 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=65.8
Q ss_pred HHHHHcCCCCCCEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----
Q 018346 120 LYCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---- 193 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---- 193 (357)
.+.+...+.++.+||-+|+| .|..+..+++.. +++|+++|.+++.++.+++ .|.+ . .+ |..+...
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~-~-~~--~~~~~~~~~~~ 205 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAA-Y-VI--DTSTAPLYETV 205 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS-E-EE--ETTTSCHHHHH
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCc-E-EE--eCCcccHHHHH
Confidence 34456678899999999987 577888888766 7899999999988777765 3442 1 12 2222110
Q ss_pred ----c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 ----E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ----~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+|+|+.+..-. ......++|+|+|++++.-
T Consensus 206 ~~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 206 MELTNGIGADAAIDSIGGP-------DGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp HHHTTTSCEEEEEESSCHH-------HHHHHHHTEEEEEEEEECC
T ss_pred HHHhCCCCCcEEEECCCCh-------hHHHHHHHhcCCCEEEEEe
Confidence 1 3699998754321 1233447999999988753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.093 Score=47.78 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-------
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME------- 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~------- 194 (357)
....+.++.+||-+|+| .|..+..+++.. +++|+++|.|++.++.+++ .|.+. . .|..+....
T Consensus 158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~--~d~~~~~~~~~~~~~~ 228 (339)
T 1rjw_A 158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADL--V--VNPLKEDAAKFMKEKV 228 (339)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSE--E--ECTTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CCCCE--E--ecCCCccHHHHHHHHh
Confidence 34467889999999986 477777888776 7899999999988776643 45421 1 233321110
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+.+|+|+..... ...++.+.++|+++|+++..
T Consensus 229 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 368998875432 24577888999999998764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.025 Score=52.45 Aligned_cols=96 Identities=9% Similarity=0.078 Sum_probs=66.4
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----Ccc--
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEM-- 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----~~~-- 193 (357)
.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.+. ++ |..+ +..
T Consensus 185 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKV----FGATD--FV--NPNDHSEPISQVL 255 (374)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCCE--EE--CGGGCSSCHHHHH
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----hCCce--EE--eccccchhHHHHH
Confidence 3456678899999999874 77888888876 66 89999999998776653 45431 12 2221 100
Q ss_pred ----ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEE
Q 018346 194 ----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 232 (357)
Q Consensus 194 ----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 232 (357)
.+.+|+|+-...- ...+..+.++|+|+ |++++.
T Consensus 256 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 256 SKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 1369999865432 34577888999999 998764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.031 Score=51.33 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
++...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.++. .
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 159 AELANIKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALE----YGAT--DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHH----HTCC--EEECGGGSCHHHHHHHHT
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCc--eEEcCCCcCHHHHHHHHc
Confidence 3667788999999999875 77888888876 66 89999999987776654 4542 12211111110 0
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. ..+|+|+-...- ...+..+.+.|+|||+++..-.
T Consensus 232 ~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp TTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence 1 369999864332 2457778899999999887543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0092 Score=55.35 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=65.6
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cccC
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEAS 196 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 196 (357)
+....+.++.+||-+|+|. |..+..+++.. +++|+++|.|++.++.+++ .|.+. ++ |..+.. ....
T Consensus 187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~~~~g 257 (369)
T 1uuf_A 187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGADE--VV--NSRNADEMAAHLKS 257 (369)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EE--ETTCHHHHHTTTTC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcE--Ee--ccccHHHHHHhhcC
Confidence 3445778899999999974 77888888876 7899999999998877654 45431 12 211100 0146
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+....-. ..++.+.+.|+|+|+++..
T Consensus 258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEEEECCSSC------CCHHHHHTTEEEEEEEEEC
T ss_pred CCEEEECCCCH------HHHHHHHHHhccCCEEEEe
Confidence 89988654321 2356677899999998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.022 Score=52.18 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----c-c-cCc
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----M-E-ASY 197 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~-~-~~f 197 (357)
.+.++.+||-+|+|. |..+..+++...+.+|+++|.|++.++.+++ .|.+. ++..+- +.. . . ..+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~--~i~~~~-~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA--AVKSGA-GAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE--EEECST-THHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE--EEcCCC-cHHHHHHHHhCCCCC
Confidence 567899999999875 7788888887656899999999998776654 45432 222111 111 0 1 369
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+-...- ...++.+.++|+|+|++++.-
T Consensus 241 d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred eEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 998865432 346788889999999988753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.025 Score=52.43 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=67.0
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc--CCCc----
Q 018346 121 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STFE---- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~~---- 192 (357)
+.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.+. ++..+- .++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVIC 255 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH----cCCcE--EEecccccchHHHHHH
Confidence 33456778899999999874 77788888876 66 89999999998776653 45431 121110 1110
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
..+.+|+|+-...- ...+..+.++|+|+ |++++.-
T Consensus 256 ~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 256 EKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence 01369999865332 34577888999999 9987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.045 Score=49.74 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=65.0
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Ccc----
Q 018346 121 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM---- 193 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~---- 193 (357)
+.+...+.++.+||-.|| |.|..+..+++.. +++|+++|.+++.++.++ ..|.+ . ..|..+ ...
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~----~~g~~-~---~~d~~~~~~~~~~~ 207 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLK----QIGFD-A---AFNYKTVNSLEEAL 207 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS-E---EEETTSCSCHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----hcCCc-E---EEecCCHHHHHHHH
Confidence 335567788999999998 5666777777665 789999999998776663 23432 1 124332 110
Q ss_pred ----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 ----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+.+..- ..+..+.++|+|||++++.
T Consensus 208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 208 KKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence 1368999876542 2467788999999998764
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.032 Score=51.69 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=66.6
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----Cc---
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE--- 192 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----~~--- 192 (357)
.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.+. .+ |..+ +.
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~--vi--~~~~~~~~~~~~v 258 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKA----LGATD--CL--NPRELDKPVQDVI 258 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCSE--EE--CGGGCSSCHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCcE--EE--ccccccchHHHHH
Confidence 3456778899999999873 77888888876 66 89999999998776643 45431 12 2211 10
Q ss_pred ---cccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 193 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 193 ---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
..+.+|+|+-...- ...+..+.+.|+++ |++++.-
T Consensus 259 ~~~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 259 TELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence 01369998865332 34677888999999 9987643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.034 Score=51.32 Aligned_cols=98 Identities=19% Similarity=0.109 Sum_probs=67.1
Q ss_pred HHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc-
Q 018346 123 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME- 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~- 194 (357)
+...+.++.+||-+|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.+. .+..+-.++. ..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADH--GINRLEEDWVERVYALTGD 255 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSE--EEETTTSCHHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCE--EEcCCcccHHHHHHHHhCC
Confidence 456678899999999875 77888888876 7899999999987776654 45431 2222211111 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..+|+|+-...- ..+..+.++|+|+|.+++.-.
T Consensus 256 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 256 RGADHILEIAGG-------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEECC
T ss_pred CCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEec
Confidence 369999875441 245677889999999887543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.031 Score=51.12 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe----ccC-CCccccCcc
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DIS-TFEMEASYD 198 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~----d~~-~~~~~~~fD 198 (357)
.+ ++.+||-+|+|. |..+..+++.. |+++|+++|.|++.++.+++ .|.+. ++.. |.. .......+|
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~g~g~D 240 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY--VSEMKDAESLINKLTDGLGAS 240 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE--EECHHHHHHHHHHHHTTCCEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE--EeccccchHHHHHhhcCCCcc
Confidence 67 899999999964 67777788764 47899999999998776654 34422 1211 110 111012699
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+....- ...++.+.++|+|+|+++..
T Consensus 241 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 241 IAIDLVGT------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------hHHHHHHHHHhhcCCEEEEe
Confidence 99875432 34577888999999998774
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=51.44 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-CCcEE-EEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-SNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v-~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~ 202 (357)
...+++|+.||.|.++..+.... +...| .++|+++.+.+..+.|... . ++.+|+.++... ..+|+++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence 35699999999999999998763 11346 6999999998888887632 1 567888876432 26999999
Q ss_pred cccccch
Q 018346 203 IEMFEHM 209 (357)
Q Consensus 203 ~~~~~~~ 209 (357)
.++-+.+
T Consensus 83 gpPCQ~f 89 (327)
T 3qv2_A 83 SPPCQPY 89 (327)
T ss_dssp CCCCTTC
T ss_pred cCCccCc
Confidence 8875554
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.025 Score=51.65 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=55.4
Q ss_pred CEEEEECCcccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEEccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 205 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~~~~ 205 (357)
.+++|+.||.|.++..+....-+ ..|.++|+++.+.+..+.|.. ...++.+|+.++... ..+|+++..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence 58999999999999999877311 347799999998877777653 334577888876432 26999998886
Q ss_pred ccch
Q 018346 206 FEHM 209 (357)
Q Consensus 206 ~~~~ 209 (357)
-+.+
T Consensus 79 CQ~f 82 (333)
T 4h0n_A 79 CQPF 82 (333)
T ss_dssp CCCS
T ss_pred Ccch
Confidence 5443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.051 Score=50.24 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----Cc---
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE--- 192 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----~~--- 192 (357)
.+..++.++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++ .|.+. ++ |..+ +.
T Consensus 183 ~~~~~~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~v 253 (373)
T 2fzw_A 183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKE----FGATE--CI--NPQDFSKPIQEVL 253 (373)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH----HTCSE--EE--CGGGCSSCHHHHH
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCce--Ee--ccccccccHHHHH
Confidence 3456678899999999874 77788888776 66 89999999998777654 35421 12 2211 10
Q ss_pred --c-ccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 193 --M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 193 --~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
. .+.+|+|+-...- ...++.+.+.|+|+ |++++.-
T Consensus 254 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 254 IEMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEe
Confidence 0 1369999865432 34577888999999 9987743
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.47 E-value=0.054 Score=50.11 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----Cc---
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FE--- 192 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----~~--- 192 (357)
.+...+.++.+||-+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+. ++ |..+ +.
T Consensus 184 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi--~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKE----VGATE--CV--NPQDYKKPIQEVL 254 (374)
T ss_dssp HTTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH----TTCSE--EE--CGGGCSSCHHHHH
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCce--Ee--cccccchhHHHHH
Confidence 3456678899999999874 77888888876 66 89999999998776643 45421 12 2211 10
Q ss_pred ---cccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEE
Q 018346 193 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 232 (357)
Q Consensus 193 ---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 232 (357)
..+.+|+|+-...- ...+..+.++|+++ |++++.
T Consensus 255 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 255 TEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 01369998865432 34577888999999 998764
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.1 Score=48.39 Aligned_cols=81 Identities=9% Similarity=0.108 Sum_probs=51.0
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHC-------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-------p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
..+...+..|+|+|.|.|.++..+.+.. ...+++.||+|+...+.-++.+... ++|.+. .++.+++ ..
T Consensus 75 ~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~-~~l~~lp--~~ 149 (387)
T 1zkd_A 75 AADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH-DSFEDVP--EG 149 (387)
T ss_dssp HTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE-SSGGGSC--CS
T ss_pred HcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEe-CChhhcC--CC
Confidence 3444455689999999999988776542 2358999999998766555444332 256654 2333333 12
Q ss_pred ccEEEEcccccch
Q 018346 197 YDRIYSIEMFEHM 209 (357)
Q Consensus 197 fD~Ii~~~~~~~~ 209 (357)
.=+|++|.+++.+
T Consensus 150 ~~~viANE~fDAl 162 (387)
T 1zkd_A 150 PAVILANEYFDVL 162 (387)
T ss_dssp SEEEEEESSGGGS
T ss_pred CeEEEeccccccC
Confidence 3467777766544
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.049 Score=49.52 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 118 LELYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
+..+.+...+.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+.+ ..|.+ . .+ |..+...
T Consensus 138 ~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~-~-~~--~~~~~~~~~ 209 (336)
T 4b7c_A 138 YFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVE---ELGFD-G-AI--DYKNEDLAA 209 (336)
T ss_dssp HHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TTCCS-E-EE--ETTTSCHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCC-E-EE--ECCCHHHHH
Confidence 333446677889999999998 4677888888776 7899999999987665522 23442 1 11 2222111
Q ss_pred ------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 ------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+.+|+|+.+..- ..+..+.+.|+++|++++.-
T Consensus 210 ~~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 210 GLKRECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HHHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHHhcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEe
Confidence 1359998875431 36788889999999988743
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.058 Score=49.19 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC---Ccc--
Q 018346 121 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---FEM-- 193 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~---~~~-- 193 (357)
+.+...+.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ ..|.+ . .+ |..+ +..
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~-~-~~--d~~~~~~~~~~~ 218 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFD-D-AF--NYKEESDLTAAL 218 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCS-E-EE--ETTSCSCSHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCc-e-EE--ecCCHHHHHHHH
Confidence 334567788999999997 5677777888766 7899999999987666542 23432 1 11 3322 110
Q ss_pred ----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 ----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+.+..- ..+..+.++|+|||++++.
T Consensus 219 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 219 KRCFPNGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred HHHhCCCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 1358998876431 3677888999999998774
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.04 Score=49.41 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHH--HHHHcCCCCCCEEEEECCcccHHHHHHH----HHCCCc--EEEEEcCCH--------HHHHH-HH
Q 018346 108 KTLEDAEKAMLEL--YCERSRLEDGHTVLDVGCGWGSLSLYIA----QKYSNC--KITGICNSK--------TQKEF-IE 170 (357)
Q Consensus 108 ~~l~~~~~~~l~~--l~~~~~~~~~~~vLDiGcG~G~~~~~la----~~~p~~--~v~~vD~s~--------~~l~~-a~ 170 (357)
..+.++....+.. +.++....+..+|||+|-|+|....... +..|.. +++.+|..+ +.... ..
T Consensus 73 GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~ 152 (308)
T 3vyw_A 73 GAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHE 152 (308)
T ss_dssp CHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHH
T ss_pred cHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHH
Confidence 3466665544432 2222222345689999999998654332 234555 456666321 11111 11
Q ss_pred HHHHHc---CCC--CeEEEEeccCCCcc--c-cCccEEEEcccccchhh----HHHHHHHHHHhcccCceEEE
Q 018346 171 EQCRVL---ELQ--NVEIIVADISTFEM--E-ASYDRIYSIEMFEHMKN----YQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 171 ~~~~~~---~~~--~v~~~~~d~~~~~~--~-~~fD~Ii~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~~ 231 (357)
...... ... .+++..+|+.+... . .++|+|+..+- ..-.+ -..+++.+.++++|||++.-
T Consensus 153 ~l~~~~p~~~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgF-sP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 153 FLLERVPEYEGERLSLKVLLGDARKRIKEVENFKADAVFHDAF-SPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp HHHHHCSEEECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCS-CTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHhCccccCCcEEEEEEechHHHHHhhhcccceeEEEeCCC-CcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 112211 111 35678888866322 2 36999998652 11111 26799999999999998764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.027 Score=52.03 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=65.7
Q ss_pred HHcCCC-----CCCEEEEEC-Cc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc--
Q 018346 123 ERSRLE-----DGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-- 192 (357)
Q Consensus 123 ~~~~~~-----~~~~vLDiG-cG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~-- 192 (357)
+...+. ++.+||=+| +| .|..+..+++...+++|+++|.+++.++.+++ .|.+.+ + |..+ +.
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~v--i--~~~~~~~~~ 231 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHHV--I--DHSKPLAAE 231 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSEE--E--CTTSCHHHH
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCEE--E--eCCCCHHHH
Confidence 445565 788999998 54 58888899987447899999999987776654 454311 1 2111 10
Q ss_pred ----cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ----~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+.+|+|+-... -...++.+.++|+|+|++++.
T Consensus 232 v~~~~~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 232 VAALGLGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHTTCSCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHhcCCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 1146898886432 235678888999999998875
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.025 Score=52.46 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=67.3
Q ss_pred HHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec--cCCCc----
Q 018346 121 YCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTFE---- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d--~~~~~---- 192 (357)
+.+...+.++.+||-+|+| .|..+..+++.. ++ +|+++|.+++.++.++ ..|.+. ++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAK----KFGVNE--FVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHH----TTTCCE--EECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCcE--EEccccCchhHHHHHH
Confidence 3455677889999999997 477888888876 66 8999999998777654 345432 12111 01110
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
..+.+|+|+-...- ...++.+.+.|+|| |++++.-
T Consensus 258 ~~~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence 01369999865332 35678888999997 9987754
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.04 Score=50.47 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=65.1
Q ss_pred HHHHcCCC------CCCEEEEEC-Cc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-C
Q 018346 121 YCERSRLE------DGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-F 191 (357)
Q Consensus 121 l~~~~~~~------~~~~vLDiG-cG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~ 191 (357)
+.+...+. ++.+||-+| +| .|..+..+++.. +++|+++|.+++.++.+++ .|.+.+ + |..+ +
T Consensus 136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v--i--~~~~~~ 206 (346)
T 3fbg_A 136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGADIV--L--NHKESL 206 (346)
T ss_dssp HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCSEE--E--CTTSCH
T ss_pred HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEE--E--ECCccH
Confidence 33455666 789999994 44 577888888876 7899999999988777665 344311 1 2111 1
Q ss_pred c------cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 E------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ~------~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. ....+|+|+.... ....+..+.++|+|+|+++..
T Consensus 207 ~~~~~~~~~~g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 207 LNQFKTQGIELVDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp HHHHHHHTCCCEEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHhCCCCccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 0 0136998887432 245677888999999998653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.18 Score=46.35 Aligned_cols=97 Identities=20% Similarity=0.309 Sum_probs=66.2
Q ss_pred HHcCCCCCCEEEEEC--CcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc
Q 018346 123 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiG--cG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 194 (357)
+...+.++.+||-.| .|.|..+..+++.. +++|++++.+++.++.+++ .|.+ ..+..+-.++. ..
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCD--RPINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHCT
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCc--EEEecCChhHHHHHHHhcC
Confidence 445678899999999 45788888888876 7899999999887766654 4542 12221111110 01
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+|+|+.+..- ..++.+.++|+++|++++.-
T Consensus 230 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 230 EGVDVVYESVGG-------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp TCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEe
Confidence 358999876431 46778889999999987743
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.059 Score=49.26 Aligned_cols=97 Identities=15% Similarity=0.315 Sum_probs=65.5
Q ss_pred HHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Ccc-----
Q 018346 122 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM----- 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~----- 193 (357)
+....+.++.+||-+|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ . . .|..+ ...
T Consensus 162 l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~-~-~--~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 162 LKSANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGE-V-F--IDFTKEKDIVGAVL 232 (347)
T ss_dssp HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCC-E-E--EETTTCSCHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCc-e-E--EecCccHhHHHHHH
Confidence 34456778999999998 4677777777765 7899999999887665543 3442 1 1 24331 110
Q ss_pred ---ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 ---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ---~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+.+|+|+.+... ...++.+.+.|+++|+++...
T Consensus 233 ~~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred HHhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence 0258999876542 346788889999999987643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.19 Score=45.51 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-------ccc
Q 018346 125 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------MEA 195 (357)
Q Consensus 125 ~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------~~~ 195 (357)
..+.++.+||-+|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ ..+..+-.+.. ...
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~--~~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAE--YLINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHTTTS
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc--EEEeCCCchHHHHHHHHhCCC
Confidence 46778999999994 4677888888776 7899999999987776644 4432 12221111110 013
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+.+..- ..++.+.++|+|||++++.-
T Consensus 217 g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 217 GVDASFDSVGK-------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp CEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred CceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence 69999876542 34677788999999988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.026 Score=51.61 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=66.2
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 194 (357)
+...+.++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+. ++..+ .++. ..
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--v~~~~-~~~~~~v~~~~~ 224 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADI--VLPLE-EGWAKAVREATG 224 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSE--EEESS-TTHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcE--EecCc-hhHHHHHHHHhC
Confidence 5566788999999997 4678888888876 7899999999988776655 34422 22222 2211 01
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+|+|+.+..- ..+..+.++|+++|++++.-
T Consensus 225 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 225 GAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 369999876542 24667888999999988753
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.12 Score=47.09 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=64.4
Q ss_pred HHcCCCCCCEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 123 ERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
....+.++.+||-.|+| .|..+..+++..++++|+++|.+++.++.+++ .|.+ . ++ |..+..
T Consensus 164 ~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~-~-~~--~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 164 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD-Y-VI--NASMQDPLAEIRRI 235 (347)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS-E-EE--ETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-E-Ee--cCCCccHHHHHHHH
Confidence 45677889999999987 45566666665436799999999988776643 3432 1 11 222211
Q ss_pred cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. +.+|+|+.+..- ...++.+.++|+|+|++++.
T Consensus 236 ~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred hcCCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 11 368998876432 34567788899999998774
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.06 Score=49.45 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred HHcCCCCC------CEEEEECCc-ccHHH-HHHH-HHCCCcE-EEEEcCCHH---HHHHHHHHHHHcCCCCeEEEEeccC
Q 018346 123 ERSRLEDG------HTVLDVGCG-WGSLS-LYIA-QKYSNCK-ITGICNSKT---QKEFIEEQCRVLELQNVEIIVADIS 189 (357)
Q Consensus 123 ~~~~~~~~------~~vLDiGcG-~G~~~-~~la-~~~p~~~-v~~vD~s~~---~l~~a~~~~~~~~~~~v~~~~~d~~ 189 (357)
+...+.++ .+||-+|+| .|..+ ..++ +.. +++ |+++|.+++ .++.+++ .|. +.+ |..
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---~~v--~~~ 229 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----LDA---TYV--DSR 229 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----TTC---EEE--ETT
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----cCC---ccc--CCC
Confidence 34455677 999999985 36677 7778 665 666 999999887 6666643 443 222 332
Q ss_pred CCcc------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 190 TFEM------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 190 ~~~~------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+... .+.+|+|+-...- ...++.+.++|+|+|+++..-
T Consensus 230 ~~~~~~i~~~~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 230 QTPVEDVPDVYEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp TSCGGGHHHHSCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred ccCHHHHHHhCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence 2111 1268988864331 245778889999999987743
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.045 Score=50.03 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEEeccCCCc--c--cc
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFE--M--EA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~-v~~~~~d~~~~~--~--~~ 195 (357)
++.....++.+||=+|+|. |..+..+++...+++|+++|.+++.++.+++ .|.+. +.....|..+.. . ..
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCC
Confidence 4556778899999999986 4566666666557899999999987655543 45421 111111211100 0 12
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|.++....- ...+....+.|+++|.+++.-
T Consensus 232 g~d~~~~~~~~------~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAVA------RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCSC------HHHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEeccC------cchhheeheeecCCceEEEEe
Confidence 46666654321 456778889999999987753
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.17 Score=45.76 Aligned_cols=94 Identities=9% Similarity=0.106 Sum_probs=63.5
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------
Q 018346 124 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------- 193 (357)
Q Consensus 124 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 193 (357)
..++.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ . . .|..+...
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~-~-~--~~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW-Q-V--INYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS-E-E--EETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-E-E--EECCCccHHHHHHHHh
Confidence 456778999999993 5666777777655 7899999999987776654 3432 1 1 23222110
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|+|+.+.. ...++.+.++|+++|++++.-
T Consensus 206 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 206 GGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp TTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence 135899987654 134677888999999987643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.15 Score=46.66 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEEC--CcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 123 ERSRLEDGHTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiG--cG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+...+.++.+||-.| +|.|..+..+++.. +++|+++|.+++.++.+++ .|.+. .+ |..+...
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--~~--~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAKR--GI--NYRSEDFAAVIKAE 231 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSE--EE--ETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCE--EE--eCCchHHHHHHHHH
Confidence 456678899999995 34677888888776 7899999999998776654 34421 12 2222111
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|+|+.+..- ..+..+.+.|+|+|.+++.-
T Consensus 232 ~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 232 TGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred hCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEE
Confidence 1369999876542 14667788999999987743
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.15 Score=46.64 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=64.9
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+..++ ++.+||-+|+| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+. .+ |..+...
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~--~~--~~~~~~~~~~v~~~ 231 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADY--VI--NPFEEDVVKEVMDI 231 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSE--EE--CTTTSCHHHHHHHH
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCE--EE--CCCCcCHHHHHHHH
Confidence 45667 88999999986 377777888776 67 89999999987776653 34421 12 2221110
Q ss_pred -c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 -E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+|+|+..... ...++.+.+.|+++|+++..-
T Consensus 232 ~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 232 TDGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TTTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 1 259999876432 345778889999999987743
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.28 Score=44.85 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+..++.++.+||-.|+ |.|..+..+++.. +++|++++.+++.++.++ ..|.+ .. .|..+...
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~----~~ga~--~~--~d~~~~~~~~~~~~~ 234 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAH--EV--FNHREVNYIDKIKKY 234 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCS--EE--EETTSTTHHHHHHHH
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHH----HcCCC--EE--EeCCCchHHHHHHHH
Confidence 3456788999999997 4677777777765 789999999998776553 33442 11 23222110
Q ss_pred -c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 -E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+|+|+.+..- ..+....++|+|+|++++.-
T Consensus 235 ~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 235 VGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred cCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence 1 269999876431 24667789999999987743
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.094 Score=48.62 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=65.4
Q ss_pred HHcC-CCCCCEEEEECCc-ccHHHHHHHHHCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec------cCC-Cc
Q 018346 123 ERSR-LEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD------IST-FE 192 (357)
Q Consensus 123 ~~~~-~~~~~~vLDiGcG-~G~~~~~la~~~p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d------~~~-~~ 192 (357)
...+ +.++.+||-+|+| .|..+..+++.. + .+|+++|.|++.++.+++ .|.+. ++..+ +.+ +.
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE----IGADL--TLNRRETSVEERRKAIM 260 (380)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH----TTCSE--EEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHH----cCCcE--EEeccccCcchHHHHHH
Confidence 4566 7789999999976 477888888876 7 599999999987776653 45432 22211 111 00
Q ss_pred --cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 --ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 --~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.. ..+|+|+-...- ...+..+.++|+|+|+++..
T Consensus 261 ~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 01 269999865432 23567788999999998774
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.2 Score=45.21 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEEC-C-cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc
Q 018346 123 ERSRLEDGHTVLDVG-C-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiG-c-G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~ 194 (357)
+...+.++.+||-.| + |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ ..+..+-.++. ..
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~--~~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAW--ETIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHhC
Confidence 345678899999998 3 4677888888776 7899999999998776654 3432 11221111110 01
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+|+|+.+..- ..+..+.++|+|+|++++.-
T Consensus 207 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 207 GKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp TCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence 369999876442 34667788999999988754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.3 Score=45.61 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cc-cC
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-AS 196 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~ 196 (357)
.+.++.+||=+|+|. |..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++..+-.++. .. ..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKE----LGAD--HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCS--EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCC--EEEcCCCCCHHHHHHHHhCCCC
Confidence 567899999999864 77888888876 66 99999999998777654 3542 11211111110 01 36
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+|+-...-.. .....+++.+.+.++++|++++.-
T Consensus 283 ~D~vid~~g~~~-~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEATGVPQ-LVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECSSCHH-HHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECCCCcH-HHHHHHHHHHHhccCCCcEEEEeC
Confidence 999986433210 011222333334449999988753
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.069 Score=49.12 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=64.5
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccC-CCc--cccCcc
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS-TFE--MEASYD 198 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~~~--~~~~fD 198 (357)
...++.++.+||-+|+| .|..+..+++.. +++|+++|.|++.++.+++ .|.+. ++..+-. +.. ..+.+|
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 173 VRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHSCSCEE
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCCE--EEcCcCchHHHHHhhcCCC
Confidence 34677889999999986 377778888766 7899999999987776654 45422 2221111 110 014699
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+....-.. ...++.+.++|+|||+++..-
T Consensus 246 ~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 246 LIVVCASSLT----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEECCSCST----TCCTTTGGGGEEEEEEEEECC
T ss_pred EEEECCCCCc----HHHHHHHHHHhcCCCEEEEec
Confidence 9987543200 122445678899999987643
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.19 Score=45.81 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------cc
Q 018346 125 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME 194 (357)
Q Consensus 125 ~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~ 194 (357)
.++.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+. . .|..+.. ..
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~--~--~d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADE--T--VNYTHPDWPKEVRRLTG 232 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSE--E--EETTSTTHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--E--EcCCcccHHHHHHHHhC
Confidence 46778999999998 5778888888776 7899999999988777653 34421 1 2332211 01
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+|+|+.+.. . ..++.+.+.|+++|+++..
T Consensus 233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEE
Confidence 36999987654 2 2466778899999998764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.36 Score=43.64 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=64.4
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------
Q 018346 124 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------- 193 (357)
Q Consensus 124 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 193 (357)
...+.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ . . .|..+...
T Consensus 140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~-~-~--~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCH-H-T--INYSTQDFAEVVREIT 210 (333)
T ss_dssp TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCS-E-E--EETTTSCHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCC-E-E--EECCCHHHHHHHHHHh
Confidence 456778999999995 5677777777766 7899999999987776654 3432 1 1 23322110
Q ss_pred -ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|+|+.+..- ..++.+.++|+|+|+++..-
T Consensus 211 ~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 211 GGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp TTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred CCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 1358999876542 34677888999999987643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.14 Score=46.26 Aligned_cols=98 Identities=11% Similarity=0.201 Sum_probs=63.8
Q ss_pred HHcCCCCCC-EEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCc
Q 018346 123 ERSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASY 197 (357)
Q Consensus 123 ~~~~~~~~~-~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~f 197 (357)
.+.++.++. +||=.|+ |.|..+..+++.. +++|++++.|++.++.+++ .|.+.+ +-..+..... ..+.+
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~v-i~~~~~~~~~~~~~~~~ 212 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGANRI-LSRDEFAESRPLEKQLW 212 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCSEE-EEGGGSSCCCSSCCCCE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEE-EecCCHHHHHhhcCCCc
Confidence 344454422 4999986 4688899999887 7899999999998777754 454321 1111211110 11468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+-... ...+..+.++|+|+|+++..-
T Consensus 213 d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 213 AGAIDTVG-------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp EEEEESSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred cEEEECCC-------cHHHHHHHHHHhcCCEEEEEe
Confidence 98775432 127888899999999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.18 Score=46.03 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------c
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E 194 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------~ 194 (357)
+...+.++.+||-+|+ |.|..+..+++.. +++|+++ .+++.++.+++ .|.+ .+. +-.+... .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~---~i~-~~~~~~~~~~~~~~ 213 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGAT---PID-ASREPEDYAAEHTA 213 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSE---EEE-TTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCC---Eec-cCCCHHHHHHHHhc
Confidence 5567788999999994 4678888888876 7899999 88887666544 4442 222 2222110 1
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+|+|+-+.. ...+..+.++|+|+|.+++.
T Consensus 214 ~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 214 GQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TSCEEEEEESSC-------THHHHHHHHHEEEEEEEEES
T ss_pred CCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEE
Confidence 36999887543 13577788899999998774
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.7 Score=41.86 Aligned_cols=101 Identities=12% Similarity=0.038 Sum_probs=65.8
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 121 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
........++.+||=.|+|. |..+..+++......++++|.+++.++.+++ .|.+ ..+..+-.+.. .
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM--QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHG
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe--EEEeCCCCCHHHHHHhhc
Confidence 45566778899999999974 6677778877633467899999987666654 5543 22221111110 0
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ..+|+|+.... ....++.+.++|++||.+++.-
T Consensus 226 ~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 226 ELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp GGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECC
T ss_pred ccCCccccccccc------ccchhhhhhheecCCeEEEEEe
Confidence 1 35787775432 1356778889999999988743
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.28 Score=44.82 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=65.4
Q ss_pred HHHHcCCCCC--CEEEEECC--cccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--
Q 018346 121 YCERSRLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 193 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiGc--G~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 193 (357)
+.+...+.++ .+||-.|+ |.|..+..+++.. ++ +|+++|.+++.++.+++. .|.+ . ..|..+...
T Consensus 150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~---~g~~-~---~~d~~~~~~~~ 221 (357)
T 2zb4_A 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSE---LGFD-A---AINYKKDNVAE 221 (357)
T ss_dssp HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT---SCCS-E---EEETTTSCHHH
T ss_pred HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHH---cCCc-e---EEecCchHHHH
Confidence 4456677888 99999997 4566777777765 77 999999998766655432 3432 1 123322111
Q ss_pred ------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 ------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+.+|+|+.+.. ...++.+.++|+++|++++.
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEE
Confidence 025899887654 15678888999999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.031 Score=50.82 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=44.4
Q ss_pred CeEEEEeccCCC-c-c-ccCccEEEEcccccch--------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 180 NVEIIVADISTF-E-M-EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 180 ~v~~~~~d~~~~-~-~-~~~fD~Ii~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..++++|..+. . . .++||+|++++++... ......++.+.++|+|||.+++.....
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 678899997652 2 2 3689999999998532 246788999999999999999976644
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.54 Score=40.78 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCCEEEEECCcc--c---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------
Q 018346 129 DGHTVLDVGCGW--G---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~--G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 193 (357)
.++++|=-|+++ | .++..|++. +++|+.+|.+++.++.+.+.+...+-.++.++.+|+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578899998643 3 245556655 89999999999888888777766654578999999987320
Q ss_pred c-cCccEEEEcccc
Q 018346 194 E-ASYDRIYSIEMF 206 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~ 206 (357)
. +..|+++.|..+
T Consensus 83 ~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 83 DVGNIDGVYHSIAF 96 (256)
T ss_dssp HHCCCSEEEECCCC
T ss_pred HhCCCCEEEecccc
Confidence 1 579999987643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.46 Score=43.39 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=63.7
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
+..++.++.+||-.|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+ . . .|..+..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~-~-~--~~~~~~~~~~~~~~~ 226 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAA-A-G--FNYKKEDFSEATLKF 226 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCS-E-E--EETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCc-E-E--EecCChHHHHHHHHH
Confidence 4456778999999984 5677777777765 7899999999988776643 3432 1 1 2322211
Q ss_pred c-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ...+|+|+.+..-. .+..+.++|+++|++++.-
T Consensus 227 ~~~~~~d~vi~~~G~~-------~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 227 TKGAGVNLILDCIGGS-------YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp TTTSCEEEEEESSCGG-------GHHHHHHHEEEEEEEEECC
T ss_pred hcCCCceEEEECCCch-------HHHHHHHhccCCCEEEEEe
Confidence 0 13589998765421 3566778999999987743
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.27 Score=38.32 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=56.8
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 202 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~ 202 (357)
..+|+=+|||. ++..+++.+ .+..|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|++
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 35788888864 333333322 27899999999998766553 2 56778899876321 1 56898887
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...-.. ....+-...+.+.|+..++...
T Consensus 78 ~~~~~~---~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 78 TIPNGY---EAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp CCSCHH---HHHHHHHHHHHHCSSSEEEEEE
T ss_pred ECCChH---HHHHHHHHHHHHCCCCeEEEEE
Confidence 544321 1222333456677888766644
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.014 Score=53.54 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=62.3
Q ss_pred HcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--------
Q 018346 124 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------- 193 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 193 (357)
..++ ++.+||-+|+|. |..+..+++.. ++ +|+++|.|++.++.+++. .+. + .|..+...
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-----a~~--v--~~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-----ADR--L--VNPLEEDLLEVVRRVT 228 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-----CSE--E--ECTTTSCHHHHHHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-----HHh--c--cCcCccCHHHHHHHhc
Confidence 5667 899999999853 77778888876 77 899999999876655442 111 1 12221110
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+|+|+....- ...++.+.+.|+++|+++..
T Consensus 229 ~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 229 GSGVEVLLEFSGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 1368998865432 34577888999999998764
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.19 Score=46.21 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=57.3
Q ss_pred CCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCH---HHHHHHHHHHHHcCCCCeEEEEeccCC-Ccc-----ccCccE
Q 018346 130 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSK---TQKEFIEEQCRVLELQNVEIIVADIST-FEM-----EASYDR 199 (357)
Q Consensus 130 ~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~---~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~-----~~~fD~ 199 (357)
+.+||-+|+| .|..+..+++.. +++|+++|.++ +.++.+++ .|.+ .+ | .+ +.. ...+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~----~ga~---~v--~-~~~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEE----TKTN---YY--N-SSNGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHH----HTCE---EE--E-CTTCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHH----hCCc---ee--c-hHHHHHHHHHhCCCCCE
Confidence 8999999984 355666667665 77999999987 66655543 3432 22 2 22 110 135899
Q ss_pred EEEcccccchhhHHHHH-HHHHHhcccCceEEEEe
Q 018346 200 IYSIEMFEHMKNYQNLL-KKISKWMKEDTLLFVHH 233 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~ 233 (357)
|+.+.... ..+ +.+.+.|+++|.+++..
T Consensus 250 vid~~g~~------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 250 IIDATGAD------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEECCCCC------THHHHHHGGGEEEEEEEEECS
T ss_pred EEECCCCh------HHHHHHHHHHHhcCCEEEEEe
Confidence 98765431 234 77889999999987743
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.063 Score=51.46 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=55.1
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------------
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------------- 193 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------------- 193 (357)
..+++|+.||.|+++..+... +.+ |.++|+++.+.+.-+.|.... +...++.+|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhh
Confidence 468999999999999988765 554 789999999877777665211 134566788765431
Q ss_pred --c-cCccEEEEcccccch
Q 018346 194 --E-ASYDRIYSIEMFEHM 209 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~~~~ 209 (357)
. ..+|+|+..++-+.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC
T ss_pred hhcCCCCCEEEecCCCcch
Confidence 1 368999988876554
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.49 E-value=0.19 Score=44.82 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=61.7
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Ccc--c-cCccEE
Q 018346 127 LEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEM--E-ASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~--~-~~fD~I 200 (357)
+.++.+||-+|+ |.|..+..+++.. +++|+++|.+++.++.+++ .|.+. .+ |..+ ... . ..+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~--~~--~~~~~~~~~~~~~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEE--AA--TYAEVPERAKAWGGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSE--EE--EGGGHHHHHHHTTSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCE--EE--ECCcchhHHHHhcCceEE
Confidence 778999999997 4677888888876 7899999999987766643 45421 12 2221 111 0 468998
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+. ..- ..++.+.++|+|+|+++..
T Consensus 194 id-~g~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE-VRG-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE-CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred EE-CCH-------HHHHHHHHhhccCCEEEEE
Confidence 87 432 2467788899999998764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.85 Score=40.26 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=54.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-cc---------c--
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~---------~-- 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.++...+.+.+.+...+..++.++.+|+.+. .. .
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 46778877765 44555544432 3789999999998877777766655545899999999875 21 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 90 g~iD~lv~nAg~ 101 (311)
T 3o26_A 90 GKLDILVNNAGV 101 (311)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 479999998764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.4 Score=44.35 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=70.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.+.+||.++.+.|.++..++.. .++.+.=|-......+.|+..++++ ++++... ..+ .+..||+|+...+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~~~~~~v~~~lp- 109 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD--YPQQPGVVLIKVP- 109 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC--CCSSCSEEEEECC-
T ss_pred CCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc--cccCCCEEEEEcC-
Confidence 4568999999999999988754 2344433566666778899888885 3665432 222 2367999988665
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.........+..+...|+||+.+++....
T Consensus 110 k~~~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 110 KTLALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp SCHHHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 34456677888999999999998775543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=1.2 Score=38.59 Aligned_cols=104 Identities=11% Similarity=0.174 Sum_probs=67.4
Q ss_pred CCCEEEEECCcc--cH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c----
Q 018346 129 DGHTVLDVGCGW--GS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~--G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~---- 194 (357)
.++++|=.|++. |. ++..|++. +++|+.++.++...+.+.+.....+..++.++.+|+.+... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 467899998763 22 44455555 78999999887666666555554443478999999987531 0
Q ss_pred --cCccEEEEcccccc-------h-----hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 --ASYDRIYSIEMFEH-------M-----KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~-------~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+++.+..+.. + ++ ...+.+.+.+.++++|.++....
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 36899998765432 1 11 12355566677778888776544
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.79 Score=40.75 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=55.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.+++||=.|++.| ++..+++.+ .+++|++++.+++.++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 5678998887654 444444332 278999999999988888777766655 79999999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 108 ~id~lvnnAg~ 118 (301)
T 3tjr_A 108 GVDVVFSNAGI 118 (301)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999988754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.54 Score=42.24 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEEC-Cc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-cc---cC
Q 018346 123 ERSRLEDGHTVLDVG-CG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-ME---AS 196 (357)
Q Consensus 123 ~~~~~~~~~~vLDiG-cG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~---~~ 196 (357)
+...+.++.+||=+| +| .|..+..+++.. +++|++++ +++.++.+ +..|.+. .+ |..+.. .. ..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~----~~lGa~~--~i--~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFL----KALGAEQ--CI--NYHEEDFLLAISTP 215 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHH----HHHTCSE--EE--ETTTSCHHHHCCSC
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHH----HHcCCCE--EE--eCCCcchhhhhccC
Confidence 667788999999996 44 688888899887 78999987 45544444 3456532 22 222211 11 46
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+-...- . .+..+.++|+|+|+++..
T Consensus 216 ~D~v~d~~g~------~-~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 216 VDAVIDLVGG------D-VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEEESSCH------H-HHHHHGGGEEEEEEEEEC
T ss_pred CCEEEECCCc------H-HHHHHHHhccCCCEEEEe
Confidence 8988864331 2 237788999999998763
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.48 Score=45.00 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC-----------
Q 018346 125 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----------- 191 (357)
Q Consensus 125 ~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----------- 191 (357)
..+.++.+||=+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+. ++...-.+.
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEA--IIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCE--EEETTTTTCCSEEETTEECH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcE--EEecCcCcccccccccccch
Confidence 46778999999997 4688888888876 8899999999987776654 45421 121111000
Q ss_pred ----------c--cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 192 ----------E--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 192 ----------~--~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. .. ..+|+|+-... ...+..+.++|+|||.+++.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 0 01 36898886433 14677788899999998874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.19 Score=46.30 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=62.8
Q ss_pred HHHcCCC-CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----ccc
Q 018346 122 CERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEA 195 (357)
Q Consensus 122 ~~~~~~~-~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~ 195 (357)
+....+. ++.+||-+|+| .|..+..+++.. +++|+++|.+++.++.+++ ..|.+ .++ |..+.. ..+
T Consensus 179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~--~v~--~~~~~~~~~~~~~ 250 (366)
T 1yqd_A 179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALK---NFGAD--SFL--VSRDQEQMQAAAG 250 (366)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHH---TSCCS--EEE--ETTCHHHHHHTTT
T ss_pred HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCc--eEE--eccCHHHHHHhhC
Confidence 3445666 88999999986 366777777776 7899999999987665542 33442 112 222110 014
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+|+|+....... .++.+.+.|+++|+++...
T Consensus 251 ~~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 251 TLDGIIDTVSAVH------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp CEEEEEECCSSCC------CSHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCcHH------HHHHHHHHHhcCCEEEEEc
Confidence 6899987644321 2345678899999987643
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.51 Score=40.84 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
++++||=.| |+|.++..+++.+ .+.+|++++.++...+...+.+...+. ++.++.+|+.+... .
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 456777666 5566666665432 278999999998877766666655543 78999999987421 0
Q ss_pred cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+|+||.+...... .+ ...+++.+.+.++++|.++...
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 278999987643210 11 1234555666666677766643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.10 E-value=1 Score=39.36 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=66.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCC------------HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~ 193 (357)
.+++||=.|++.|. ++..|++. +++|+.+|.+ ...++.+.......+. ++.++.+|+.+...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~ 85 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-KAYTAEVDVRDRAA 85 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-ceEEEEccCCCHHH
Confidence 46788888876542 34444444 7899999987 6666666666655554 89999999987421
Q ss_pred -----c------cCccEEEEcccccch------hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 194 -----E------ASYDRIYSIEMFEHM------KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 -----~------~~fD~Ii~~~~~~~~------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. +..|++|.+...... ++ .-.+.+.+.+.++++|.++...
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 0 378999988754221 11 2234556666777788876643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.97 E-value=1 Score=39.12 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|=.|++.|. ++..|++. +++|+.+|.+++.++.+.+.....+. ++.++.+|+.+... .
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56789988876652 44445554 78999999999988887777766654 89999999987421 0
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
+..|++|.+..
T Consensus 87 g~id~lv~nAg 97 (264)
T 3ucx_A 87 GRVDVVINNAF 97 (264)
T ss_dssp SCCSEEEECCC
T ss_pred CCCcEEEECCC
Confidence 37899998873
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.28 Score=46.04 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCEEEEECCcccHHHHHHHHHC----C-CcEEEEEcCCHHHHHHHHHHHHH
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY----S-NCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~----p-~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
..+|+|+|.|.|.++..+.+.. + ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4799999999999888776432 1 24899999999987777776654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=1.9 Score=38.12 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred CCCEEEEECCccc-H----HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c----
Q 018346 129 DGHTVLDVGCGWG-S----LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G-~----~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~---- 194 (357)
.++++|=.|+++| . ++..|++. +++|+.++.++...+.+.+.....+ ++.++.+|+.+... .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence 5788999997643 2 44455555 7899999998765555555444443 68899999987421 0
Q ss_pred --cCccEEEEcccccc----------h--hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 --ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+..+.. . ++ ...+.+.+.+.++++|.++....
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 47899998875432 0 11 23355666777778888776543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.74 Score=35.60 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 202 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~ 202 (357)
..+|+=+|||. ++..+++.+ .+.+|+++|.+++.++.+++ . .+.++.+|..+... . ..+|+|+.
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 45799999854 555444432 27799999999987665543 2 46778888876321 1 46898887
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...- . .....+....+.+. ...++...
T Consensus 77 ~~~~--~-~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 77 TGSD--D-EFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp CCSC--H-HHHHHHHHHHHHHC-CCCEEEEE
T ss_pred ecCC--H-HHHHHHHHHHHHhC-CceEEEEE
Confidence 6551 1 12223333344445 55555533
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.76 Score=40.00 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=56.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... .
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 46778877766653 44445555 89999999999998888887777765 78899999987320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
++.|+++.|...
T Consensus 85 G~iDiLVNNAG~ 96 (255)
T 4g81_D 85 IHVDILINNAGI 96 (255)
T ss_dssp CCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 578999988744
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.11 Score=47.82 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 130 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 130 ~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
+.+|+=+|+| .|..+..++... +++|+++|.+++.++.+++.... .+.....+..++... ..+|+|+......
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 4899999986 344444555555 67999999999877766554321 222222221111111 4689998765443
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEe
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+.-+.+...+.++|||+++...
T Consensus 242 ~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 242 GRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 21111111344567899999876543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.69 E-value=1.1 Score=38.80 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=55.0
Q ss_pred CCCEEEEECC-cccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGC-GWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGc-G~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.+++||=.|+ |+|. ++..|+++ +++|+.+|.++..++.+.+.+...+..++.++.+|+.+... .
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678888887 4442 44555555 78999999999888777776655544489999999987421 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
++.|++|.+...
T Consensus 99 ~g~id~li~~Ag~ 111 (266)
T 3o38_A 99 AGRLDVLVNNAGL 111 (266)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCCcEEEECCCc
Confidence 368999988754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.078 Score=47.98 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred HHcCCCCCC-EEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc-CC-C-c-ccc
Q 018346 123 ERSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-F-E-MEA 195 (357)
Q Consensus 123 ~~~~~~~~~-~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~-~-~-~~~ 195 (357)
...++.++. +||-+|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+.+ +-..+. .+ . . ...
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~ 215 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEV-LAREDVMAERIRPLDKQ 215 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEE-EECC---------CCSC
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEE-EecCCcHHHHHHHhcCC
Confidence 345666775 8999997 5678888888876 7899999999887766643 454321 111111 01 0 0 114
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-...- ..+..+.++|+++|++++.
T Consensus 216 ~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 216 RWAAAVDPVGG-------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CEEEEEECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred cccEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 68988865431 2466778899999998764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.17 Score=46.40 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=62.3
Q ss_pred HHHcCCC-CCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCc-cccCc
Q 018346 122 CERSRLE-DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE-MEASY 197 (357)
Q Consensus 122 ~~~~~~~-~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~-~~~~f 197 (357)
+....+. ++.+||-+|+| .|..+..+++.. +++|+++|.+++.++.+++ ..|.+.+ +.. +..... ..+.+
T Consensus 172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~~v--i~~~~~~~~~~~~~g~ 245 (357)
T 2cf5_A 172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQ---DLGADDY--VIGSDQAKMSELADSL 245 (357)
T ss_dssp HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHT---TSCCSCE--EETTCHHHHHHSTTTE
T ss_pred HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH---HcCCcee--eccccHHHHHHhcCCC
Confidence 3445677 89999999986 466777778776 7899999999876655542 3454322 111 100000 01468
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+-...-. ..++...++|+|+|+++..
T Consensus 246 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 246 DYVIDTVPVH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEEEECCCSC------CCSHHHHTTEEEEEEEEEC
T ss_pred CEEEECCCCh------HHHHHHHHHhccCCEEEEe
Confidence 9988654321 1245567899999998774
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.73 Score=39.86 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=64.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
.++++|=.|++.| ++..+++.+ .+++|+.+|.+++.++...+.. +. ++.++.+|+.+... . +
T Consensus 7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GP-RVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GG-GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC-cceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678888886654 444444332 2789999999988776655443 22 78999999987421 0 4
Q ss_pred CccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 196 SYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
..|+++.+...... ++ .-.+.+.+.+.++++|.++....
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 78999987644211 11 22345556666777887766443
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=1.1 Score=39.61 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCCEEEEECCcc-cHH----HHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c----
Q 018346 129 DGHTVLDVGCGW-GSL----SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~----~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~---- 194 (357)
.++++|=.|+++ ..+ +..|++. +++|+.+|.++...+.+.+.....+ ++.++.+|+.+... .
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE 104 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999754 234 4444544 7899999999876665555555444 56889999987421 0
Q ss_pred --cCccEEEEcccccc----------h--hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 --ASYDRIYSIEMFEH----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+..+.. . ++ ...+.+.+.+.++.+|.++....
T Consensus 105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 47899998875432 1 11 22345556667777888776543
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.38 Score=38.19 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcC
Q 018346 113 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICN 161 (357)
Q Consensus 113 ~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~ 161 (357)
+|+..+++.+.....-+ .-|||+|-|+|..=..|.+.+|+..++++|-
T Consensus 25 aQR~~L~~a~~~v~~~~-GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLS-GPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHHHHHTTTCC-SCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHHHHHhcCCC-CceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 55667777777765444 4699999999999999999999999999984
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=92.15 E-value=1.6 Score=37.97 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=65.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|=.|++. .++..+++.+ .+++|+.++. +....+...+.....+. ++.++.+|+.+... .
T Consensus 17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGS-DAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888887654 4444444332 2789988765 45556655565655554 79999999987421 0
Q ss_pred cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+...... ++ .-.+.+.+.+.++++|.++....
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 378999987654221 11 23355667778888888776544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.15 Score=47.08 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=54.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
++.+|+=+|+|. |..+...+... +++|+++|.+++.++.+.+. .+. .+.....+..++... ..+|+|+.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~---~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDV---FGG-RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHh---cCc-eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 468999999852 33333344444 78999999999876655432 233 322222121111111 468999887654
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.......-+.+.+.+.++|||.++...
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEe
Confidence 321111112456778899999876543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.06 E-value=2 Score=37.60 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|++.|. ++..|++. +++|+.+|. +++.++...+.....+. ++.++.+|+.+... .
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCeEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888866542 34444444 789999985 77777666666665554 89999999987431 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 378999988754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.11 Score=48.13 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-ccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~Ii~~~~~ 206 (357)
++.+|+=+|+|. |..+...++.+ +++|+++|.+++.++.+++. .+. .+.....+..++.. -...|+|+.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~---~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAE---FCG-RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHh---cCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 578999999863 44444444455 67999999999876665442 232 22222111111110 1458999875422
Q ss_pred cchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.......-+.+...+.+||||+++...
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 211111112355667899999876543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.21 Score=45.07 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=62.6
Q ss_pred HcCCCCCC-EEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc-CC-Cc--cccC
Q 018346 124 RSRLEDGH-TVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-ST-FE--MEAS 196 (357)
Q Consensus 124 ~~~~~~~~-~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~-~~--~~~~ 196 (357)
..++.++. +||-.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+.+ +-..+. .+ .. ....
T Consensus 144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~v-~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp HTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCSSCCCC
T ss_pred hcCcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEE-EECCCchHHHHHHhhcCC
Confidence 45566775 8999997 4677888888776 7899999999887766654 354321 111111 11 10 1146
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+|+.... . ..+..+.++|+|||++++.
T Consensus 218 ~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPVG-----G--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESCC-----T--HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECCc-----H--HHHHHHHHhhcCCCEEEEE
Confidence 898886543 1 2577888999999998774
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.79 E-value=2.4 Score=36.90 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=65.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCC-HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s-~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|++.|. ++..|++. +++|+.++.+ ....+...+.....+. ++.++.+|+.+... .
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789988876542 34444444 7899888544 4555555555555554 78999999987421 0
Q ss_pred -cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+...... ++ .-.+++.+.+.|+++|.++....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 378999988644211 11 23456667778888888776543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.52 E-value=0.63 Score=43.95 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=64.2
Q ss_pred cCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe--ccCCC---------
Q 018346 125 SRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA--DISTF--------- 191 (357)
Q Consensus 125 ~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~--d~~~~--------- 191 (357)
..+.++.+||=.|+ |.|..+..+++.. +++|++++.+++.++.+++ .|.+.+ +... |..+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~-i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRA----LGCDLV-INRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCCCE-EEHHHHTCCTTGGGCHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEE-Eecccccccccccccccccc
Confidence 56778999999997 4577888888876 7899999999987776643 454321 1111 11000
Q ss_pred ------c------cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 192 ------E------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 192 ------~------~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
. ....+|+|+.+..- ..++...++|++||.+++.-
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESC
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEe
Confidence 0 01369999875442 35677888999999988743
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.16 Score=51.01 Aligned_cols=103 Identities=10% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-------CC-----cEEEEEcC---CHHHHHHHHH-----------HHHHc-----C
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-------SN-----CKITGICN---SKTQKEFIEE-----------QCRVL-----E 177 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-------p~-----~~v~~vD~---s~~~l~~a~~-----------~~~~~-----~ 177 (357)
+..+|+|+|.|+|...+.+.+.+ |. .+++.+|. +.+.+..+-. ..... |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45799999999999887765532 22 57999998 5554443221 11111 1
Q ss_pred -----C-C---CeEEEEeccCCCcc------ccCccEEEEcccccch-h--hHHHHHHHHHHhcccCceEEE
Q 018346 178 -----L-Q---NVEIIVADISTFEM------EASYDRIYSIEMFEHM-K--NYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 178 -----~-~---~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+ + .++++.+|+.+... ...+|.++..+.-... + -...++..+.++++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0 0 46778888765321 2569999986522111 0 126788999999999998765
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.32 E-value=2.4 Score=32.16 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=52.2
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-ccCccEEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYS 202 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~fD~Ii~ 202 (357)
+.+|+=+|+| .++..+++.+ .+.+|+++|.+++.++..++. . .+.++.+|..+.. . ...+|+|+.
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence 4688888875 4444444332 267999999998865544321 2 3456777765421 1 146899888
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
...-. .....+..+.+.+.++ .+++
T Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 76 VTGKE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred eeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence 75432 2223444555667775 4444
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.31 E-value=1.4 Score=38.04 Aligned_cols=76 Identities=20% Similarity=0.136 Sum_probs=51.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|+ +|.++..+++.+ .+.+|++++. ++..++...+.....+. ++.++.+|+.+... .
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567887765 566666655543 3789999988 77766665555555444 78899999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+.+|+|+.+...
T Consensus 98 ~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 98 GGLDFVMSNSGM 109 (274)
T ss_dssp SCEEEEECCCCC
T ss_pred CCCCEEEECCCC
Confidence 268999887643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.1 Score=38.88 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=63.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|++.|. ++..|+++ +++|+.+ +.+++..+.+.+.....+. ++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGR-SALAIKADLTNAAEVEAAISAAADK 83 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTS-CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 34444444 7899888 7777766666665555554 78999999987421 0
Q ss_pred -cCccEEEEccccc-------ch--hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFE-------HM--KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~-------~~--~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+++.+.... .. ++ .-.+.+.+.+.++++|.++...
T Consensus 84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3789999876432 11 11 2234555666677777766643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=91.29 E-value=1.2 Score=40.58 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=56.6
Q ss_pred HcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEe------ccCCCccc
Q 018346 124 RSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVA------DISTFEME 194 (357)
Q Consensus 124 ~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~------d~~~~~~~ 194 (357)
...+.++.+||=+|+ |.|..+..+++.. +++++++ +.++.. +...+.++..|.+.+ +.. ++.+....
T Consensus 162 ~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~-~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~ 237 (357)
T 1zsy_A 162 FEQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDI-QKLSDRLKSLGAEHV--ITEEELRRPEMKNFFKD 237 (357)
T ss_dssp SSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCH-HHHHHHHHHTTCSEE--EEHHHHHSGGGGGTTSS
T ss_pred HhccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccch-HHHHHHHHhcCCcEE--EecCcchHHHHHHHHhC
Confidence 356788999999996 4688888898876 6766554 443321 111223344565322 221 11111111
Q ss_pred -cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 195 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
..+|+|+-...- .. .....++|+|+|++++.
T Consensus 238 ~~~~Dvvid~~g~------~~-~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 238 MPQPRLALNCVGG------KS-STELLRQLARGGTMVTY 269 (357)
T ss_dssp SCCCSEEEESSCH------HH-HHHHHTTSCTTCEEEEC
T ss_pred CCCceEEEECCCc------HH-HHHHHHhhCCCCEEEEE
Confidence 148988864321 11 23567899999998774
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=1.9 Score=38.07 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH-HHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~-~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++.| ++..+++.+ .+++|+.++.++. ..+...+.....+. ++.++.+|+.+... .
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGV-KCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678898886654 444444332 2789999998765 33334444444443 79999999987421 0
Q ss_pred cCccEEEEcccccc----h-----hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|++|.+..... + ++ .-.+++.+.+.++.+|.++...
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 47899998753321 1 11 2345666777788888776643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=3.1 Score=35.92 Aligned_cols=76 Identities=8% Similarity=-0.046 Sum_probs=53.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-~~~~~v~~~~~d~~~~~~---------~- 194 (357)
.++++|=.|++.|. ++..|++. +++|+.+|.+++.++.+.+.+.. .+..++.++.+|+.+... .
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34444444 78999999999888777776655 333368999999987421 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 85 ~g~id~lvnnAg~ 97 (265)
T 3lf2_A 85 LGCASILVNNAGQ 97 (265)
T ss_dssp HCSCSEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 478999988754
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.1 Score=48.21 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec--------------------
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------------------- 187 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-------------------- 187 (357)
++.+|+=+|+|. |..+..++..+ +++|+++|.++..++.+.+ .|. +++..+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~----lGa---~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRS----VGA---QWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHH----TTC---EECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccchhhhhHHHHhh
Confidence 578999999984 55555555555 7899999999987666654 232 222211
Q ss_pred -cCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 188 -ISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 188 -~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
...+... ...|+||.......-+.+.-+-+++.+.+|||++++=
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 0001001 5789999753222111111123677788999886544
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=91.06 E-value=1.5 Score=38.45 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++.| ++..+++.+ .+++|+.++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 31 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTG-IGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678888887654 444443332 278999999999888777777766654 78899999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 109 ~iD~lvnnAg~ 119 (276)
T 3r1i_A 109 GIDIAVCNAGI 119 (276)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999988754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.00 E-value=1.6 Score=38.51 Aligned_cols=104 Identities=8% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC--HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS--KTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s--~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~- 194 (357)
.++++|=.|++. .++..+++.+ .+++|+.++.+ ....+...+.....+. ++.++.+|+.+... .
T Consensus 48 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDS-GIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467888888654 4444444332 27899999886 3444555555555554 78999999987421 0
Q ss_pred -cCccEEEEcccccc----h-----hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+++.+..... + ++ .-.+.+.+.+.++++|.++....
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 47899998875421 1 11 23355666677778888776543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.96 E-value=2.7 Score=36.45 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=50.3
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++||=.|| |.++..+++.+ .+.+|++++-++........ .+++++.+|+.++. ...+|+|+.......
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-LDGVTHLLISTAPDS 75 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-CTTCCEEEECCCCBT
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc-cCCCCEEEECCCccc
Confidence 68999994 88888887664 36799999998875433222 27899999998865 467899998776543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.94 E-value=0.097 Score=45.84 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=38.9
Q ss_pred eEEEEeccCCCc---cccCccEEEEcccccch--------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFE---MEASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+++++|..+.. ..++||+|++.+|+..- ......++.+.++|+|||.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456777765421 12689999999998532 235677888899999999999974
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.87 E-value=2 Score=37.08 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=51.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++. .++..+++.+ .+++|+.++.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 6 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 6 NGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 467888887654 4444444432 278999999998877766665554443 78899999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 84 ~id~lv~nAg~ 94 (262)
T 1zem_A 84 KIDFLFNNAGY 94 (262)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.85 E-value=1.5 Score=38.59 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=65.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++.+|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+. .+. ++.++.+|+.+... .
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~---~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAE---IGG-GAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---HCT-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH---cCC-CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57888888877663 45555555 89999999999887765443 343 77888999987421 1
Q ss_pred cCccEEEEcccccc------h--hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEH------M--KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++.|+++.|..... + ++ .-...+.+.+.|+.+|.++...
T Consensus 102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899998874321 1 11 2334556667788888766543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.79 E-value=2.4 Score=36.70 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHH-cCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~-~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++. .++..+++.+ .+++|+.++.+++.++.+.+.+.. .+. ++.++.+|+.+... .
T Consensus 19 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATK-GIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT-DVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467788777654 4444444332 278999999999888777666654 343 79999999987531 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 97 g~id~lv~nAg~ 108 (266)
T 4egf_A 97 GGLDVLVNNAGI 108 (266)
T ss_dssp TSCSEEEEECCC
T ss_pred CCCCEEEECCCc
Confidence 378999988744
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.17 Score=47.17 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
++.+|+=+|+|. |..+..++..+ +++|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 568999999984 55555666666 7899999999987666544
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.62 E-value=2.3 Score=36.99 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=65.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|++.|. ++..|++. +++|+.+ ..++...+...+.....+. ++.++.+|+.+... .
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 102 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASD--GFTVVINYAGKAAAAEEVAGKIEAAGG-KALTAQADVSDPAAVRRLFATAEEA 102 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHH--TCEEEEEESSCSHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788888876552 44555555 7888887 4555566655555555554 78999999987421 0
Q ss_pred -cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|++|.+...... ++ .-.+++.+.+.++++|.++...
T Consensus 103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 378999988754211 11 2235566677778888877654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.57 E-value=1.3 Score=38.35 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 128 EDGHTVLDVGCG-WGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 128 ~~~~~vLDiGcG-~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++||=.|++ +|.++..+++.+ .+++|+.++.+....+.+++.....+ ++.++.+|+.+... .
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 367899999974 355555554433 27899999988665555555444443 57889999987421 0
Q ss_pred -cCccEEEEcccccc-----------h--hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEH-----------M--KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~-----------~--~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+..+.. . .+ ...+.+.+.+.++++|.++....
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 36899998765422 1 11 22345556666777787766543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.95 Score=43.38 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++++|+=+|+|. |......++.+ +++|+++|.++...+.++ ..|. ++ .++.+. -...|+|+....
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~----~~Ga---~~--~~l~e~--l~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAM----MEGF---DV--VTVEEA--IGDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHH----HTTC---EE--CCHHHH--GGGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH----HcCC---EE--ecHHHH--HhCCCEEEECCC
Confidence 45789999999863 44444445555 789999999998665543 3343 22 232221 146899998654
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
-.++-+ ....+.+||||+++...
T Consensus 339 t~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 339 NKDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp SSCSBC-----HHHHHHSCTTCEEEECS
T ss_pred CHHHHH-----HHHHHhcCCCcEEEEeC
Confidence 333211 24567799999886643
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.46 E-value=2.4 Score=36.97 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcC-------------CHHHHHHHHHHHHHcCCCCeEEEEeccCCCc
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-------------SKTQKEFIEEQCRVLELQNVEIIVADISTFE 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~-------------s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~ 192 (357)
.++++|=.|++.|. ++..|++. +++|+++|. +++.++.+.+.....+. ++.++.+|+.+..
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~ 90 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDA 90 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHH
Confidence 56788888876542 34444444 789999997 67777766666665554 7899999998742
Q ss_pred c-----c------cCccEEEEcccc
Q 018346 193 M-----E------ASYDRIYSIEMF 206 (357)
Q Consensus 193 ~-----~------~~fD~Ii~~~~~ 206 (357)
. . +..|++|.+...
T Consensus 91 ~v~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 91 ALRELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 0 378999988754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=90.35 E-value=2.6 Score=37.64 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=54.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++.| ++..+++.+ .+.+|++++.++..++.+.+.+...+.. ++.++.+|+.+... .
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 4678888887654 444444332 2789999999999888777776655532 78999999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 86 g~id~lv~nAg~ 97 (319)
T 3ioy_A 86 GPVSILCNNAGV 97 (319)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 367999988754
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.33 E-value=2 Score=37.39 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=53.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++...+.+...+. ++.++.+|+.+... . +
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 27 DKQVAIVTGAS-RGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45677777754 44444444332 278999999999888877777766665 78889999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 105 ~iD~lvnnAg~ 115 (270)
T 3ftp_A 105 ALNVLVNNAGI 115 (270)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999988754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.27 E-value=3.2 Score=36.11 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcC-------------CHHHHHHHHHHHHHcCCCCeEEEEeccCCCc
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICN-------------SKTQKEFIEEQCRVLELQNVEIIVADISTFE 192 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~-------------s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~ 192 (357)
.++++|=.|++.|. ++..|++. +++|+.+|. +++.++...+.....+. ++.++.+|+.+..
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence 46788888876542 34444544 789999998 67777666666655554 7999999998742
Q ss_pred c-----c------cCccEEEEcccc
Q 018346 193 M-----E------ASYDRIYSIEMF 206 (357)
Q Consensus 193 ~-----~------~~fD~Ii~~~~~ 206 (357)
. . +..|++|.+...
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 0 468999988754
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.22 Score=46.26 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIE 170 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~ 170 (357)
++.+|+=+|+|. |..+..+++.+ +++|+++|.++...+.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVE 212 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 578999999984 55555566666 679999999987665553
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.16 E-value=1.7 Score=36.62 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=47.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEEeccCCCccc--cCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME--ASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v-~~~~~d~~~~~~~--~~fD~Ii~~ 203 (357)
.+++||=.|+ +|.++..+++.+ .+.+|++++-++..++.... . ++ .++.+|+.+.... +..|+|+.+
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~---~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R---GASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T---TCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C---CCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 4788998874 566666655443 37899999998876543322 1 67 8999998721111 578999988
Q ss_pred cccc
Q 018346 204 EMFE 207 (357)
Q Consensus 204 ~~~~ 207 (357)
....
T Consensus 92 ag~~ 95 (236)
T 3e8x_A 92 AGSG 95 (236)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.36 Score=48.30 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC-------CC-----cEEEEEcC---CHHHHHHHHH-----------HHHHcCC----
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY-------SN-----CKITGICN---SKTQKEFIEE-----------QCRVLEL---- 178 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~-------p~-----~~v~~vD~---s~~~l~~a~~-----------~~~~~~~---- 178 (357)
+.-+|+|+|-|+|.......+.+ |. .+++++|. +++.+..+-. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44699999999999777665432 21 46899998 7777663332 1111110
Q ss_pred ----------CCeEEEEeccCCCcc------ccCccEEEEcccccch-hh--HHHHHHHHHHhcccCceEEEE
Q 018346 179 ----------QNVEIIVADISTFEM------EASYDRIYSIEMFEHM-KN--YQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 179 ----------~~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~-~~--~~~~l~~~~~~LkpgG~l~~~ 232 (357)
-.+++..+|+.+... ...||+|+..+--... ++ ...++..+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 034566677655211 1469999986522111 11 367899999999999987653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=90.12 E-value=2 Score=37.54 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----cC
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-----AS 196 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-----~~ 196 (357)
.++++|=.|++ |.++..+++.+ .+++|+.+|.+++.++.+.+.....+. ++.++.+|+.+... . +.
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGG-TAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTC-CEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 46788877765 44444444432 278999999998877777776666554 79999999987531 0 36
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
.|++|.+...
T Consensus 110 iD~lvnnAg~ 119 (275)
T 4imr_A 110 VDILVINASA 119 (275)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999988754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.10 E-value=0.17 Score=45.86 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=42.3
Q ss_pred CeEEE-EeccCCCc---cccCccEEEEcccccch-----------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 180 NVEII-VADISTFE---MEASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 180 ~v~~~-~~d~~~~~---~~~~fD~Ii~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...++ ++|..+.. ..+++|+|++.+|+..- ......+..+.++|+|||.+++.....
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 35667 88876521 12689999999998532 245677888899999999999986644
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.66 Score=48.33 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCc--EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 190 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~--~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~---------------- 190 (357)
...+++|+.||.|+++..+... |. .+.++|+++.+.+.-+.|.. +..++..|+.+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhh
Confidence 4568999999999999999877 65 57799999998777666642 34555555421
Q ss_pred -CccccCccEEEEcccccch
Q 018346 191 -FEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 191 -~~~~~~fD~Ii~~~~~~~~ 209 (357)
++..+.+|+|+..++-+.+
T Consensus 612 ~lp~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTC
T ss_pred hcccCCCeeEEEEcCCCcch
Confidence 1112468999988865444
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=90.03 E-value=1.3 Score=38.40 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=57.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++.+|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.+...|. ++.++.+|+.+... .
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57788888877663 45555555 89999999999999888888877775 89999999987421 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
++.|+++.|..
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 57999998864
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=4 Score=37.26 Aligned_cols=92 Identities=7% Similarity=-0.023 Sum_probs=60.3
Q ss_pred CCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cccCccE
Q 018346 128 EDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYDR 199 (357)
Q Consensus 128 ~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD~ 199 (357)
.++.+||=+|+ |.|..+..+++.. +++|+++. |++.++.++ ..|.+ .++...-.++. ..+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~--~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAE--EVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCS--EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCc--EEEECCCchHHHHHHHHccCCccE
Confidence 67899999998 3788999999886 78999885 787666554 35543 12222111110 1145999
Q ss_pred EEEcccccchhhHHHHHHHHHHhc-ccCceEEEEe
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHH 233 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 233 (357)
|+-...- ...+..+.+.| ++||+++..-
T Consensus 235 v~d~~g~------~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 235 ALDCITN------VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEESSCS------HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEECCCc------hHHHHHHHHHhhcCCCEEEEEe
Confidence 8864331 34567778888 6999987643
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=2.9 Score=36.56 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=51.6
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCC----------------HHHHHHHHHHHHHcCCCCeEEEEeccC
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS----------------KTQKEFIEEQCRVLELQNVEIIVADIS 189 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s----------------~~~l~~a~~~~~~~~~~~v~~~~~d~~ 189 (357)
.++++|=.|++.|. ++..|++. +++|+++|.+ ++.++...+.....+. ++.++.+|+.
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~ 86 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-RIVTAEVDVR 86 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-ceEEEEcCCC
Confidence 46788888876552 34444544 7899999987 6666665555555444 7999999998
Q ss_pred CCcc---------c--cCccEEEEcccc
Q 018346 190 TFEM---------E--ASYDRIYSIEMF 206 (357)
Q Consensus 190 ~~~~---------~--~~fD~Ii~~~~~ 206 (357)
+... . +..|++|.+...
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 7421 0 478999988754
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=89.77 E-value=3.8 Score=35.04 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=52.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc--CCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~~~---------~- 194 (357)
.++++|=.|++. .++..+++.+ .+++|+.+|.+++.++.+.+.....+..++.++..|+ .+... .
T Consensus 11 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (252)
T 3f1l_A 11 NDRIILVTGASD-GIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN 89 (252)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence 467888888654 4444444332 2789999999998887776666554433788899998 43210 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 90 ~g~id~lv~nAg~ 102 (252)
T 3f1l_A 90 YPRLDGVLHNAGL 102 (252)
T ss_dssp CSCCSEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 378999988754
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.22 Score=46.55 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFI 169 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a 169 (357)
++.+|+=+|+|. |..+..+++.+ +++|+++|.++..++.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHH
Confidence 478999999984 55555666666 68999999999876655
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=89.55 E-value=3.3 Score=36.96 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=50.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC------------HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.++++|=.|++.| ++..+++.+ .+++|+++|.+ ++.++...+.....+. ++.++.+|+.+...
T Consensus 45 ~gk~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 45 QGKVAFITGAARG-QGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLASL 122 (317)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 4678887776554 444443332 27899999876 6666666555555554 79999999987421
Q ss_pred ----c------cCccEEEEcccc
Q 018346 194 ----E------ASYDRIYSIEMF 206 (357)
Q Consensus 194 ----~------~~fD~Ii~~~~~ 206 (357)
. +..|++|.+...
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 0 478999988754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.4 Score=36.81 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=52.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC------------HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS------------KTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.+++||=.|++.| ++..+++.+ .+++|+++|.+ ++.++...+.....+. ++.++.+|+.+...
T Consensus 12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRESL 89 (278)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHH
Confidence 4678888886544 444443332 27899999987 6666666666555554 89999999987421
Q ss_pred ----c------cCccEEEEccccc
Q 018346 194 ----E------ASYDRIYSIEMFE 207 (357)
Q Consensus 194 ----~------~~fD~Ii~~~~~~ 207 (357)
. +..|++|.+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 0 3789999887553
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=89.32 E-value=3.6 Score=35.82 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=53.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~----- 194 (357)
.+++||=.|++. .++..+++.+ .+++|+.+|.+++.++.+.+.+...+.. ++.++.+|+.+... .
T Consensus 10 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 10 QDRTYLVTGGGS-GIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888888654 4444444332 2789999999998887777766655432 68899999987421 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 89 ~g~id~lv~nAg~ 101 (281)
T 3svt_A 89 HGRLHGVVHCAGG 101 (281)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 368999987754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.31 E-value=1.3 Score=38.85 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++.| ++..+++.+ .+++|+++|.+++.++...+.+...+. ++.++.+|+.+... . +
T Consensus 7 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 7 EGKIAIVTGASSG-IGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGG-EAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTC-CEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4677887776544 444444332 278999999999887777666554443 78999999987421 0 4
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 85 ~iD~lvnnAg~ 95 (280)
T 3tox_A 85 GLDTAFNNAGA 95 (280)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999988753
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.28 E-value=4.7 Score=34.96 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.++..++...+.+...+. .++.++.+|+.+... .
T Consensus 31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45788888754 55555554432 378999999998877766666665553 268889999887421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+.+|+||.+...
T Consensus 110 g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 110 SGVDICINNAGL 121 (279)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999987653
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.27 E-value=3.8 Score=35.10 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------cC
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------AS 196 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~~ 196 (357)
++++|=.|++ |.++..+++.+ .+++|++++.+++.++...+.....+. ++.++.+|+.+... . +.
T Consensus 2 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 2 KKVALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3567777754 44555554432 278999999998877666555555443 78899999987421 0 37
Q ss_pred ccEEEEcccc
Q 018346 197 YDRIYSIEMF 206 (357)
Q Consensus 197 fD~Ii~~~~~ 206 (357)
+|++|.+...
T Consensus 80 id~lv~nAg~ 89 (256)
T 1geg_A 80 FDVIVNNAGV 89 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999988743
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=89.21 E-value=0.56 Score=42.88 Aligned_cols=98 Identities=10% Similarity=0.136 Sum_probs=58.9
Q ss_pred cCCCCC-CEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe------ccCC-Cc--
Q 018346 125 SRLEDG-HTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA------DIST-FE-- 192 (357)
Q Consensus 125 ~~~~~~-~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~------d~~~-~~-- 192 (357)
..+.++ .+||=.|+ |.|..+..+++.. +++++++..+++.++..++.++..|.+. ++.. |+.+ +.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~--vi~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEW 238 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeE--EEecCccchHHHHHHHHHH
Confidence 467788 99999986 4678888888876 7888888655543222223334456532 1221 1111 00
Q ss_pred ---cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+-...- .... .+.++|+++|+++..
T Consensus 239 t~~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEEC
T ss_pred hhccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEe
Confidence 01358988865331 1223 567899999998774
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=89.19 E-value=2.9 Score=34.69 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=56.7
Q ss_pred EEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
+||=.| |+|.++..+++.+ .+.+|++++-++..+... .. .+++++.+|+.+.... ..+|+||.+....
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~------~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR------LG-ATVATLVKEPLVLTEADLDSVDAVVDALSVP 73 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------TC-TTSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc------cC-CCceEEecccccccHhhcccCCEEEECCccC
Confidence 577776 4566666665543 378999999988754321 11 3789999999875322 5789999877553
Q ss_pred c----hhhHHHHHHHHHHhccc-CceEEEE
Q 018346 208 H----MKNYQNLLKKISKWMKE-DTLLFVH 232 (357)
Q Consensus 208 ~----~~~~~~~l~~~~~~Lkp-gG~l~~~ 232 (357)
+ ..........+.+.++. |+.+++.
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1 12223344555555554 4455443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=89.12 E-value=5.2 Score=35.49 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=50.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEE-EeccCCCcc-c---cCccEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFEM-E---ASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~~~~-~---~~fD~Ii 201 (357)
++++||=.|+ +|.++..+++.+ .+.+|++++.++...+..........-.+++++ .+|+.+... . ..+|+|+
T Consensus 10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 10 EGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 5678998874 566666665443 368999999988765544433322111378888 789876421 1 4689999
Q ss_pred Eccccc
Q 018346 202 SIEMFE 207 (357)
Q Consensus 202 ~~~~~~ 207 (357)
.+....
T Consensus 89 h~A~~~ 94 (342)
T 1y1p_A 89 HIASVV 94 (342)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 876543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=4.1 Score=35.04 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++++|=.|++ |.++..+++.+ .+++|+.+ +.++..++...+.....+. ++.++.+|+.+... .
T Consensus 3 ~~k~vlVTGas-~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 3 QNKCALVTGSS-RGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp CCCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45677777755 44555544432 27888886 8888877777666665554 79999999987421 0
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
++.|++|.+..
T Consensus 81 g~id~lv~nAg 91 (258)
T 3oid_A 81 GRLDVFVNNAA 91 (258)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCC
Confidence 46799998874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.08 E-value=1.4 Score=40.34 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred CCCCCEEEEEC-C-cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-cCcc
Q 018346 127 LEDGHTVLDVG-C-GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-ASYD 198 (357)
Q Consensus 127 ~~~~~~vLDiG-c-G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~fD 198 (357)
+.++.+||=.| + |.|..+..+++.. +++|++++ +++.++.+ +..|.+. .+ |..+... . ..+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~----~~lGa~~--v~--~~~~~~~~~~~~~~~g~D 250 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELV----RKLGADD--VI--DYKSGSVEEQLKSLKPFD 250 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHH----HHTTCSE--EE--ETTSSCHHHHHHTSCCBS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHH----HHcCCCE--EE--ECCchHHHHHHhhcCCCC
Confidence 67889999999 3 4678888888876 78999998 66655554 3445431 12 2221111 1 3689
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+|+-...-. ...+....++|++||+++..
T Consensus 251 ~vid~~g~~-----~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 251 FILDNVGGS-----TETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EEEESSCTT-----HHHHGGGGBCSSSCCEEEES
T ss_pred EEEECCCCh-----hhhhHHHHHhhcCCcEEEEe
Confidence 988654321 12356667789999998764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.05 E-value=5.1 Score=33.87 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEecc--CCCc-----c----c-
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI--STFE-----M----E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~~~-----~----~- 194 (357)
.+++||=.|++ |.++..+++.+ .+++|+.++.++..++...+.+...+..++.++..|+ .+.. . .
T Consensus 13 ~~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 91 (247)
T 3i1j_A 13 KGRVILVTGAA-RGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence 46788877765 45554444432 2789999999999888887777766645778888887 3311 0 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 92 ~g~id~lv~nAg~ 104 (247)
T 3i1j_A 92 FGRLDGLLHNASI 104 (247)
T ss_dssp HSCCSEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 378999988754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=2.6 Score=37.74 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=56.6
Q ss_pred CCEEEEECCcc--cHHHHHHHHHCCCc--EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-CccccCccEEEEcc
Q 018346 130 GHTVLDVGCGW--GSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FEMEASYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~--G~~~~~la~~~p~~--~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~Ii~~~ 204 (357)
..+|.=||+|. +.++..+++. +. +|+++|.+++.++.+.+ .|. +.-...|..+ . -...|+|+..-
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~----~G~--~~~~~~~~~~~~--~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVD----LGI--IDEGTTSIAKVE--DFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHH----TTS--CSEEESCTTGGG--GGCCSEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHH----CCC--cchhcCCHHHHh--hccCCEEEEeC
Confidence 36899999874 3345555555 45 99999999987665543 343 1112234333 2 14579999876
Q ss_pred cccchhhHHHHHHHHHHhcccCceEE
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
+... ...+++++...|+||.+++
T Consensus 103 p~~~---~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 PVRT---FREIAKKLSYILSEDATVT 125 (314)
T ss_dssp CGGG---HHHHHHHHHHHSCTTCEEE
T ss_pred CHHH---HHHHHHHHhhccCCCcEEE
Confidence 6543 4567888888898887554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.82 E-value=1.9 Score=31.63 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccEEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYS 202 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~Ii~ 202 (357)
+.+|+=+|+ |.++..++..+ .+ .+|+++|.++..++... .. .+.+...|+.+... -..+|+|+.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---GVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---TCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---CCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 468999998 55555544332 25 78999999988655443 11 56778888775321 146899998
Q ss_pred ccccc
Q 018346 203 IEMFE 207 (357)
Q Consensus 203 ~~~~~ 207 (357)
..+..
T Consensus 76 ~~~~~ 80 (118)
T 3ic5_A 76 AAPFF 80 (118)
T ss_dssp CSCGG
T ss_pred CCCch
Confidence 77543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.74 E-value=1.7 Score=37.17 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=54.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.+++||=.|++. .++..+++.+ .+++|+.+|.+++.++...+.....+. ++.++.+|+.+... . +
T Consensus 8 ~~k~vlITGas~-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 8 ENKVGIVTGSGG-GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG-TAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888888654 4444444432 278999999999988877777766554 78999999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999988754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.73 E-value=2.8 Score=32.82 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=56.8
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC-HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIY 201 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s-~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii 201 (357)
..+|+=+|+ |.++..+++.+ .+..|+++|.+ ++..+...... . ..+.++.+|..+... . ...|+|+
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---G-DNADVIPGDSNDSSVLKKAGIDRCRAIL 76 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---C-TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---c-CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence 346777776 55666655443 26789999997 44333333221 1 157889999876321 1 5689888
Q ss_pred EcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 202 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+...-. .....+....+.+.|...++...
T Consensus 77 ~~~~~d---~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 77 ALSDND---ADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ECSSCH---HHHHHHHHHHHHHTSSSCEEEEC
T ss_pred EecCCh---HHHHHHHHHHHHHCCCCEEEEEE
Confidence 865432 23344555666677777776644
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=4.1 Score=34.24 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=51.6
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHH-HcCCCCeEEEEeccCCCcc-----c------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCR-VLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++++|=.|++ |.++..+++.+ .+++|+.++.+++.++.+.+... ..+. ++.++.+|+.+... . +
T Consensus 2 ~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGAS-RGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV-EVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-eEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 4577877765 44555554433 27899999999988777666554 3343 89999999987421 1 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 80 ~id~li~~Ag~ 90 (235)
T 3l77_A 80 DVDVVVANAGL 90 (235)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78999988754
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.43 E-value=3.7 Score=35.51 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc-----c--cCcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM-----E--ASYD 198 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~-----~--~~fD 198 (357)
.++++|=.|++ |.++..+++.+ .+++|+.+|.+++.++...+.+...+. ..+.++.+|+.+... . +..|
T Consensus 9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 45778877765 44444444432 278999999999887777666655432 267888999876321 1 4789
Q ss_pred EEEEcccc
Q 018346 199 RIYSIEMF 206 (357)
Q Consensus 199 ~Ii~~~~~ 206 (357)
+++.+...
T Consensus 88 ~lv~nAg~ 95 (267)
T 3t4x_A 88 ILINNLGI 95 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99988754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=4.7 Score=35.12 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=62.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~-l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.++.. .+.+.+.+...+. ++.++.+|+.+... .
T Consensus 28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45677777765 55555555433 37899999887543 3434444444443 78899999876321 0
Q ss_pred cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|++|.+...... ++ ...+++.+.+.|+.+|.++....
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 368999988754221 11 22345666677767787766543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=1.6 Score=37.20 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=52.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.+++||=.| |+|.++..+++.+ .+.+|++++.++..++...+.+...+. ++.++.+|+.+... . +
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 356787776 5566666666543 378999999998877666555555443 78899999886321 0 2
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
.+|+||.+...
T Consensus 88 ~~d~vi~~Ag~ 98 (255)
T 1fmc_A 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.14 E-value=4.4 Score=35.36 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|=.|++.|. ++..|++. +++|+++|.+++.++.+.+.. +. ++.++.+|+.+... .
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI---GC-GAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH---CS-SCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---CC-cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888766542 34444444 789999999988766554433 33 78899999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 102 g~iD~lvnnAg~ 113 (277)
T 3gvc_A 102 GGVDKLVANAGV 113 (277)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 478999988754
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=88.12 E-value=0.48 Score=41.56 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=35.3
Q ss_pred EeccCCCccccCccEEEEcccc----cc-h--hhH----HHHHHHHHHhcccCceEEEEeccCC
Q 018346 185 VADISTFEMEASYDRIYSIEMF----EH-M--KNY----QNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 185 ~~d~~~~~~~~~fD~Ii~~~~~----~~-~--~~~----~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
..|+......+++|+|+|+..- ++ - .|. .-+++.+.++|+|||.+++..+...
T Consensus 195 ~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 195 RLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred ccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 5566553322679999998632 22 1 222 2256667889999999999888765
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.02 E-value=2.4 Score=36.84 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------- 194 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++.+.+.....+. ++.++.+|+.+... .
T Consensus 20 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 20 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888865 45554444432 278999999999877766665555454 78899999876321 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 98 g~id~lv~nAg~ 109 (273)
T 1ae1_A 98 GKLNILVNNAGV 109 (273)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCcEEEECCCC
Confidence 468999988754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.95 E-value=3.9 Score=33.68 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=54.7
Q ss_pred EEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
+||=.| |+|.++..+++.+ .+.+|++++-++..+... . ++++++.+|+.+.... ..+|+|+.+....
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H-KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C-SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c-CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 577676 4566666655443 368999999987643321 1 3789999999875322 5689999877543
Q ss_pred c--hhhHHHHHHHHHHhccc--CceEEEE
Q 018346 208 H--MKNYQNLLKKISKWMKE--DTLLFVH 232 (357)
Q Consensus 208 ~--~~~~~~~l~~~~~~Lkp--gG~l~~~ 232 (357)
. ..........+.+.++. .+.+++.
T Consensus 73 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 73 PDEAEKHVTSLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp TTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred ccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence 1 11122334444444443 3455543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.91 E-value=1.1 Score=40.25 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CC-----------CCeEEEEeccC
Q 018346 130 GHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL-----------QNVEIIVADIS 189 (357)
Q Consensus 130 ~~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~-----------~~v~~~~~d~~ 189 (357)
..+|-=||+|+=+ ++..++.. |..|+..|++++.++.+.+++... +. .++++. .|+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~ 82 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLA 82 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchH
Confidence 4689999998633 44445544 889999999999988877665431 11 012221 2222
Q ss_pred CCccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 190 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 190 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+. -...|+|+= .+.+.++-.+++++++-++++|+.++.-.+.+.
T Consensus 83 ~a--~~~ad~ViE-av~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 83 EA--VEGVVHIQE-CVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp HH--TTTEEEEEE-CCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred hH--hccCcEEee-ccccHHHHHHHHHHHHHHHhhhcceeehhhhhc
Confidence 10 134676653 356677778899999999999998876655544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=1.8 Score=40.54 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYS 202 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~ 202 (357)
..+|+=+|+|. ++..+++.+ .+..|+++|.+++.++.+++ . .+.++.+|..+... . ...|+|++
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 35688888763 444443322 27899999999998876653 3 45678899887421 1 56898887
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...- +.....+-...+.+.|+..+++.....
T Consensus 75 ~~~~---~~~n~~i~~~ar~~~p~~~Iiara~~~ 105 (413)
T 3l9w_A 75 AIDD---PQTNLQLTEMVKEHFPHLQIIARARDV 105 (413)
T ss_dssp CCSS---HHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred CCCC---hHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 5432 123334555666778888877755543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=87.88 E-value=3 Score=35.85 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++. .++..+++.+ .+++|+.+|.+++.++...+.. +. ++.++.+|+.+... . +
T Consensus 7 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 7 EGKSALITGSAR-GIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GP-AAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CT-TEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC-CceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 467888888654 4444444332 2789999999988765554433 32 78899999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 82 ~id~lv~~Ag~ 92 (259)
T 4e6p_A 82 GLDILVNNAAL 92 (259)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999988754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=1.8 Score=34.09 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c-ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~fD~I 200 (357)
.++.+|+=+|||. ++..+++.+ .+.+|+++|.+++.++.++. .. .+.++.+|..+.. . ...+|+|
T Consensus 17 ~~~~~v~IiG~G~--iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGR--LGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHcCcccCCEE
Confidence 3578999999863 333333221 26799999999875433221 11 3456667754321 0 1468998
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+....-. .....+..+.+.+.|...++..
T Consensus 89 i~~~~~~---~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 89 FAFTNDD---STNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp EECSSCH---HHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEeCCc---HHHHHHHHHHHHHCCCCeEEEE
Confidence 8765432 2233333444445555555543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.71 E-value=4.5 Score=35.63 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=51.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++...+.+...+.. ++.++.+|+.+... .
T Consensus 25 ~~k~vlVTGas-~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITGSS-NGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45678877754 55555554433 2789999999998777666655544421 68899999987421 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 104 ~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 104 FGKIDILVNNAGA 116 (297)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 368999987643
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.59 E-value=1.8 Score=36.23 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=56.2
Q ss_pred EEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 204 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~ 204 (357)
+|+=+|+ |.++..+++.+ .+..|+++|.+++.++...+. . .+.++.+|..+... . ..+|+|++..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L---KATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 4666775 55666655543 267999999999876544322 2 46788999876321 1 5689988765
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.-. .....+..+.+.+.|...++...
T Consensus 74 ~~d---~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 74 PRD---EVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp SCH---HHHHHHHHHHHHTSCCCEEEECC
T ss_pred CCc---HHHHHHHHHHHHHcCCCeEEEEE
Confidence 432 22344555555566666665533
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=87.54 E-value=2.2 Score=36.94 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCC---HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c----
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNS---KTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s---~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~---- 194 (357)
.++++|=.|++ |.++..+++.+ .+++|+.++.+ .+.++...+.....+. ++.++.+|+.+... .
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGA-KVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTC-EEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 46788888765 45666665554 37899998654 3444444444444443 78999999987421 0
Q ss_pred --cCccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 195 --ASYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 --~~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|++|.+...... ++ .-.+.+.+.+.|+++|.++...
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 478999988753211 11 2234555666677788776643
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=4.9 Score=34.79 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=51.1
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++ |.++..+++.+ .+++|+.++. ++..++...+.....+. ++.++.+|+.+... .
T Consensus 27 ~~k~vlVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 27 TDRIALVTGAS-RGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQESEVEALFAAVIERW 104 (269)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46678877765 44444444332 2789998887 67766666666665554 78999999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 105 g~id~lv~nAg~ 116 (269)
T 4dmm_A 105 GRLDVLVNNAGI 116 (269)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999988754
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=2.7 Score=35.91 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++...+.+...+. ++.++.+|+.+... . +
T Consensus 6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 6 QGKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35788888865 44554444432 278999999998887766666655444 78999999987321 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 84 ~id~lv~nAg~ 94 (247)
T 2jah_A 84 GLDILVNNAGI 94 (247)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=2.7 Score=36.19 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------- 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.+++.++...+.....+. ++.++.+|+.+... .
T Consensus 8 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 8 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788888764 45555544432 278999999998877766555554443 78899999987420 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 86 g~id~lv~~Ag~ 97 (260)
T 2ae2_A 86 GKLNILVNNAGI 97 (260)
T ss_dssp TCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 468999988753
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.01 E-value=8.9 Score=36.28 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCEEEEECCccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH-------cC------CC--CeEEEEeccCCCc
Q 018346 130 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE------LQ--NVEIIVADISTFE 192 (357)
Q Consensus 130 ~~~vLDiGcG~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~-------~~------~~--~v~~~~~d~~~~~ 192 (357)
-.+|.=||+|.= .++..++.. +..|+++|.+++.++.+++.... .| .+ ...+ ..|...
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-- 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE-- 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence 357999999862 344445544 78999999999988877653321 11 00 1222 334321
Q ss_pred cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 193 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 193 ~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
-...|+||..-+ +...-...+++++...++|+.+++.
T Consensus 112 -~~~aDlVIeaVp-e~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 -LSTVDLVVEAVF-EDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp -GTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -HCCCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 145799887654 3333346788888888988876654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.88 E-value=4.5 Score=34.80 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=49.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.+++..+.+.+.+.... -.++.++.+|+.+... .
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 6 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45688888865 45554444432 27899999999876655444433211 1268899999987321 0
Q ss_pred cCccEEEEccccc
Q 018346 195 ASYDRIYSIEMFE 207 (357)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (357)
+..|++|.+....
T Consensus 85 g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 85 GRLDILVNNAGVN 97 (267)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3579999887543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.83 E-value=2.1 Score=37.17 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCC--CCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~-----~----- 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.+++.++.+.+....... .++.++.+|+.+... .
T Consensus 5 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 5 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 35677777754 55555554432 378999999998877665554421111 268899999987421 0
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 84 ~g~id~lv~~Ag~ 96 (278)
T 1spx_A 84 FGKLDILVNNAGA 96 (278)
T ss_dssp HSCCCEEEECCC-
T ss_pred cCCCCEEEECCCC
Confidence 378999988643
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=86.75 E-value=4.5 Score=35.33 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCH-HHHHHHHHHHH-HcCCCCeEEEEeccCC----Ccc-----c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSK-TQKEFIEEQCR-VLELQNVEIIVADIST----FEM-----E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~-~~l~~a~~~~~-~~~~~~v~~~~~d~~~----~~~-----~ 194 (357)
.++++|=.|++.|. ++..|++. +++|++++.++ +.++.+.+.+. ..+. ++.++.+|+.+ ... .
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSAEAAVSLADELNKERSN-TAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHH--TCEEEEEESSCHHHHHHHHHHHHHHSTT-CEEEEECCCSCSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHHHHHhhcCC-ceEEEEeecCCccCCHHHHHHHHH
Confidence 46678877765442 34444444 78999999887 66655555444 3343 78999999987 310 0
Q ss_pred ------cCccEEEEcccc
Q 018346 195 ------ASYDRIYSIEMF 206 (357)
Q Consensus 195 ------~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 99 ~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 368999988753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=5 Score=34.25 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|+ +|.++..+++.+ .+++|++++. ++..++...+.....+. ++.++.+|+.+... .
T Consensus 6 ~~k~vlITGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 6 EGKVVVITGS-STGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 456565555443 3789999998 77766655555554443 78899999886321 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+.+|+||.+...
T Consensus 84 g~id~li~~Ag~ 95 (261)
T 1gee_A 84 GKLDVMINNAGL 95 (261)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 268999987643
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=86.40 E-value=2.9 Score=36.88 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=50.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE-eccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.+++|+=+|+|. |......+..+ +.+|+++|.++...+.+. ..|. .... .++.+. -...|+|+..-+.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~----~~g~---~~~~~~~l~~~--l~~aDvVi~~~p~ 223 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIA----EMGM---EPFHISKAAQE--LRDVDVCINTIPA 223 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTS---EEEEGGGHHHH--TTTCSEEEECCSS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHH----HCCC---eecChhhHHHH--hcCCCEEEECCCh
Confidence 678999999863 33333333344 679999999987543332 3332 3221 122111 1568999988776
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+-+.. ...+.+|||+.++-
T Consensus 224 ~~i~~------~~l~~mk~~~~lin 242 (293)
T 3d4o_A 224 LVVTA------NVLAEMPSHTFVID 242 (293)
T ss_dssp CCBCH------HHHHHSCTTCEEEE
T ss_pred HHhCH------HHHHhcCCCCEEEE
Confidence 44321 23457899887654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=6 Score=33.57 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
++++|=.|++ |.++..+++.+ .+++|+.++. +++..+...+.....+. ++.++.+|+.+... . +
T Consensus 4 ~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGAS-RGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567766654 45555544432 2789988876 55666666666665554 78899999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+++.+...
T Consensus 82 ~id~lv~nAg~ 92 (246)
T 3osu_A 82 SLDVLVNNAGI 92 (246)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999988754
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=86.25 E-value=1.5 Score=44.64 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=34.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC----CCc-EEEEEcCCHHHHHHHHHHH
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY----SNC-KITGICNSKTQKEFIEEQC 173 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~----p~~-~v~~vD~s~~~l~~a~~~~ 173 (357)
+..+|+|+-||.|+++.-+.... .+. -+.++|+++.+++.-+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 34689999999999998887652 012 4679999999888777764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=85.97 E-value=5.8 Score=35.29 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCCEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc--
Q 018346 129 DGHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE-- 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~-- 204 (357)
+..+|.=||+|..+ ++..++......+++.+|++++....+..... ...+++... .|...+ ...|+|+...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~~~i~~t-~d~~~l---~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNLPNVEIS-KDLSAS---AHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTCTTEEEE-SCGGGG---TTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcCCCeEEe-CCHHHH---CCCCEEEEcCCC
Confidence 44689999999633 56666666333489999999864444444433 222356553 554322 4579999875
Q ss_pred ----------cccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 205 ----------MFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 205 ----------~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.....+-...+++.+.+.- |++++++.
T Consensus 88 ~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 88 LGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 2233334566777777764 99998773
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.72 E-value=7.4 Score=33.51 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=47.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 195 (357)
.++++|=.|++ |.++..+++.+ .+++|++++.+++.++.+.+. .+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlITGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVAA---LE-AEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CC-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hc-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45688888765 44454444432 278999999998765544332 22 378899999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 80 ~iD~lvnnAg~ 90 (263)
T 2a4k_A 80 RLHGVAHFAGV 90 (263)
T ss_dssp CCCEEEEGGGG
T ss_pred CCcEEEECCCC
Confidence 67999988754
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.71 E-value=0.35 Score=44.09 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=56.8
Q ss_pred HHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 122 CERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
.+...+.++.+||=.|+ |.|..+..+++...+.+|++++ ++...+.++ .|.+. ++. +-.++. .
T Consensus 135 ~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~--~~~-~~~~~~~~~~~~~ 205 (349)
T 4a27_A 135 FEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTH--LFD-RNADYVQEVKRIS 205 (349)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSE--EEE-TTSCHHHHHHHHC
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcE--EEc-CCccHHHHHHHhc
Confidence 34567788999999998 3577778888765457899988 555443332 34422 222 111111 0
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+.+|+|+-...- ..+..+.++|+|+|++++.-
T Consensus 206 ~~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 206 AEGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp TTCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred CCCceEEEECCCc-------hhHHHHHHHhhcCCEEEEEC
Confidence 1469998864321 12366778999999998754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=85.68 E-value=3.7 Score=35.93 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHH-------HHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-------QKEFIEEQCRVLELQNVEIIVADISTFEM-----E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~-------~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~ 194 (357)
.++++|=.|++.| ++..+++.+ .+++|++++.++. .++.+.+.....+. ++.++.+|+.+... .
T Consensus 8 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 8 RGKTMFISGGSRG-IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHH
Confidence 4678888887654 444444432 2789999998865 34445555555554 79999999987421 0
Q ss_pred ------cCccEEEEcccc
Q 018346 195 ------ASYDRIYSIEMF 206 (357)
Q Consensus 195 ------~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 86 ~~~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 378999988754
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=85.67 E-value=1.1 Score=41.83 Aligned_cols=46 Identities=9% Similarity=-0.228 Sum_probs=35.9
Q ss_pred CCEEEEECCcccHHHHHHHHHCC-CcE----EEEEcCCHHHHHHHHHHHHH
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYS-NCK----ITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p-~~~----v~~vD~s~~~l~~a~~~~~~ 175 (357)
..+|+|+.||.|+....+.+..- ..- |.++|+++.++..-+.+...
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 46899999999999999877620 012 77899999998887777643
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.40 E-value=5.2 Score=33.90 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c--cCcc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E--ASYD 198 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~fD 198 (357)
.++++||=.|++. .++..+++.+ .+++|+.++.+++.++...+.. . .++.+..+|+.+... . +..|
T Consensus 12 ~~~k~vlVTGas~-gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 12 LTGKTSLITGASS-GIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL---K-DNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp CTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C-SSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---c-cCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 3577888877654 4444444432 2789999999988766554433 2 278899999886321 1 4689
Q ss_pred EEEEcccc
Q 018346 199 RIYSIEMF 206 (357)
Q Consensus 199 ~Ii~~~~~ 206 (357)
+++.+...
T Consensus 87 ~li~~Ag~ 94 (249)
T 3f9i_A 87 ILVCNAGI 94 (249)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99988754
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.32 E-value=6.7 Score=33.02 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=49.1
Q ss_pred CCEEEEECCcccHHHHHHHHHC--CCc-------EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--SNC-------KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E- 194 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p~~-------~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~- 194 (357)
+++||=.|+ +|.++..+++.+ .+. +|++++.++..++...+.....+. ++.++.+|+.+... .
T Consensus 2 ~k~vlITGa-sggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~ 79 (244)
T 2bd0_A 2 KHILLITGA-GKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTH 79 (244)
T ss_dssp CEEEEEETT-TSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCC-eeeEEEecCCCHHHHHHHHHH
Confidence 356777775 455555554432 156 899999998877666555544343 78999999987421 0
Q ss_pred -----cCccEEEEcccc
Q 018346 195 -----ASYDRIYSIEMF 206 (357)
Q Consensus 195 -----~~fD~Ii~~~~~ 206 (357)
+..|+||.+...
T Consensus 80 ~~~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 80 IVERYGHIDCLVNNAGV 96 (244)
T ss_dssp HHHHTSCCSEEEECCCC
T ss_pred HHHhCCCCCEEEEcCCc
Confidence 368999987643
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.22 E-value=2.4 Score=36.38 Aligned_cols=75 Identities=9% Similarity=-0.071 Sum_probs=54.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-----A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-----~ 195 (357)
.++++|=.|++.|. ++..|++. +++|+++|.+++.++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 46788888876552 34444444 78999999999888887777766654 79999999987421 0 3
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 83 ~id~lv~nAg~ 93 (252)
T 3h7a_A 83 PLEVTIFNVGA 93 (252)
T ss_dssp CEEEEEECCCC
T ss_pred CceEEEECCCc
Confidence 68999988754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.90 E-value=7.8 Score=33.37 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=50.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
++++||=.|++ |.++..+++.+ .+++|+.+ +.+++..+...+.....+. ++.++.+|+.+... .
T Consensus 25 ~~k~vlITGas-~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 25 DTPVVLVTGGS-RGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGG-EAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CSCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45677777754 55555555443 27888776 7778777766666665554 78999999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 103 g~id~li~nAg~ 114 (272)
T 4e3z_A 103 GRLDGLVNNAGI 114 (272)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 368999987654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=4 Score=35.09 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-ELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~-~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.+++||=.|++ |.++..+++.+ .+++|++++.+++.++.+.+..... +. ++.++.+|+.+... .
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (263)
T 3ai3_A 6 SGKVAVITGSS-SGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGV-RVLEVAVDVATPEGVDAVVESVRSSF 83 (263)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35788888765 44555544432 2789999999988776655554433 43 78899999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 84 g~id~lv~~Ag~ 95 (263)
T 3ai3_A 84 GGADILVNNAGT 95 (263)
T ss_dssp SSCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999988754
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.79 E-value=4.7 Score=32.46 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=52.4
Q ss_pred CCEEEEECCcccHHHHHHHHHC--C-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----c--ccCccEE
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY--S-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M--EASYDRI 200 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~--p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~--~~~fD~I 200 (357)
+.+|+=+||| .++..+++.+ . +.+|+++|.+++.++.+++ . .+.++.+|..+.. . ...+|+|
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~---g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E---GRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T---TCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C---CCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 5689988875 4444444332 2 5689999999987655432 3 3455677765421 1 1468988
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
+....-. .....+-...+.+.|++.++..
T Consensus 110 i~~~~~~---~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 110 LLAMPHH---QGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp EECCSSH---HHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCh---HHHHHHHHHHHHHCCCCEEEEE
Confidence 8754321 1122223344556777777664
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=14 Score=37.34 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=67.8
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-----------CC----CCeEEEEeccCCCcccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-----------EL----QNVEIIVADISTFEMEA 195 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-----------~~----~~v~~~~~d~~~~~~~~ 195 (357)
.+|-=||+|+-+-++...-...+..|+..|++++.++.+++..... .. .++. ...|..++ .
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---~ 392 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL---S 392 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE-EESCGGGG---G
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc-ccCcHHHH---h
Confidence 5899999997544443333333899999999999998887755321 00 1222 12222222 4
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..|+||= .+.+.++-..++++++-.+++|+.++.-.+.+.
T Consensus 393 ~aDlVIE-AV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl 432 (742)
T 3zwc_A 393 TVDLVVE-AVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL 432 (742)
T ss_dssp SCSEEEE-CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred hCCEEEE-eccccHHHHHHHHHHHhhcCCCCceEEecCCcC
Confidence 5787774 367778778899999999999999877655544
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=84.52 E-value=1.8 Score=46.49 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCc--EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC----------------
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNC--KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 190 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~--~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~---------------- 190 (357)
+..+++|+.||.|+++..+... |. .+.++|+++.+++.-+.|.. ...++..|+.+
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~ 922 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQ 922 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred CCceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhh
Confidence 4568999999999999998876 54 47799999998877766642 33445544321
Q ss_pred -CccccCccEEEEcccccch
Q 018346 191 -FEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 191 -~~~~~~fD~Ii~~~~~~~~ 209 (357)
++..+.+|+|+..++-+.+
T Consensus 923 ~lp~~~~vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 923 RLPQKGDVEMLCGGPPCQGF 942 (1330)
T ss_dssp BCCCTTTCSEEEECCCCTTT
T ss_pred hccccCccceEEecCCCccc
Confidence 1112468999988876554
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=84.46 E-value=2.2 Score=36.98 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=47.8
Q ss_pred CCCEEEEECC-cccHHHHHHHHHC--CCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-----
Q 018346 129 DGHTVLDVGC-GWGSLSLYIAQKY--SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-----E----- 194 (357)
Q Consensus 129 ~~~~vLDiGc-G~G~~~~~la~~~--p~~~v~~vD~s~~~-l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 194 (357)
.++++|=.|+ |+|.++..+++.+ .+++|+.++.++.. ++... ...+ .++.++.+|+.+... .
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRLP-AKAPLLELDVQNEEHLASLAGRVTEA 81 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTSS-SCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH---HhcC-CCceEEEccCCCHHHHHHHHHHHHHH
Confidence 4678999998 3666666665543 37899999987653 22222 1222 267889999887321 0
Q ss_pred -c---CccEEEEcccc
Q 018346 195 -A---SYDRIYSIEMF 206 (357)
Q Consensus 195 -~---~fD~Ii~~~~~ 206 (357)
+ ..|++|.+...
T Consensus 82 ~g~~~~iD~lv~nAg~ 97 (269)
T 2h7i_A 82 IGAGNKLDGVVHSIGF 97 (269)
T ss_dssp HCTTCCEEEEEECCCC
T ss_pred hCCCCCceEEEECCcc
Confidence 2 78999987653
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=84.35 E-value=3.7 Score=36.32 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=51.0
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE-eccCCCccccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEMEASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~fD~Ii~~~~~ 206 (357)
.+.+|+=+|+|. |......+..+ +.+|++.|.++...+.+. ..+. .... .++.+. -...|+|+...+.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~----~~g~---~~~~~~~l~~~--l~~aDvVi~~~p~ 225 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARIT----EMGL---VPFHTDELKEH--VKDIDICINTIPS 225 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTC---EEEEGGGHHHH--STTCSEEEECCSS
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHH----HCCC---eEEchhhHHHH--hhCCCEEEECCCh
Confidence 578999999864 33222333344 679999999987543332 2332 3222 122111 1568999988776
Q ss_pred cchhhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+-+.. ...+.+|||+.++-
T Consensus 226 ~~i~~------~~~~~mk~g~~lin 244 (300)
T 2rir_A 226 MILNQ------TVLSSMTPKTLILD 244 (300)
T ss_dssp CCBCH------HHHTTSCTTCEEEE
T ss_pred hhhCH------HHHHhCCCCCEEEE
Confidence 44321 24467899886544
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.24 E-value=4.1 Score=34.97 Aligned_cols=75 Identities=7% Similarity=-0.026 Sum_probs=54.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------ 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------ 194 (357)
.++++|=.|++.|. ++..|++. +++|+.+|.+++.++...+.+...+. ++.++.+|+.+... .
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGG-KAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888766542 44445555 78999999999888877777766654 89999999987421 0
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 88 g~id~lv~nAg~ 99 (256)
T 3gaf_A 88 GKITVLVNNAGG 99 (256)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 378999988754
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=84.20 E-value=23 Score=31.82 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred CCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHc-----------------------CCCCeEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL-----------------------ELQNVEII 184 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~-----------------------~~~~v~~~ 184 (357)
+...|+-+|||.=.....+... .++..++=+|. |+.++.=++.+... ..++..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4578999999998888877754 24678889998 66665444444321 02378899
Q ss_pred EeccCCCc----------cc-cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 185 VADISTFE----------ME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 185 ~~d~~~~~----------~~-~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+|+.+.. +. ...-++++-.++.++ +....+++.+.+...+|..++.+..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i 231 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQV 231 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEecc
Confidence 99987631 11 234478888888888 4567788888877655555544443
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.18 E-value=6.6 Score=34.01 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHH-------HHHHHHHHHHcCCCCeEEEEeccCCCcc-----
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQ-------KEFIEEQCRVLELQNVEIIVADISTFEM----- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~-------l~~a~~~~~~~~~~~v~~~~~d~~~~~~----- 193 (357)
.++++|=.|++.|. ++..|++. +++|+.++.+... ++...+.....+. ++.++.+|+.+...
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~ 81 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARD--GANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG-QGLALKCDIREEDQVRAAV 81 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTS-EEEEEECCTTCHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeccchhhhhhHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHH
Confidence 46788888877552 34444544 7899999887642 4444444444444 78999999987421
Q ss_pred ----c--cCccEEEEcccc
Q 018346 194 ----E--ASYDRIYSIEMF 206 (357)
Q Consensus 194 ----~--~~fD~Ii~~~~~ 206 (357)
. +..|++|.+...
T Consensus 82 ~~~~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 82 AATVDTFGGIDILVNNASA 100 (274)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 0 478999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 357 | ||||
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 3e-46 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 3e-44 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 2e-41 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-18 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-16 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-14 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 3e-14 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-13 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 8e-11 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 6e-10 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-09 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-09 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 8e-09 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-08 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 8e-08 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 2e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-06 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-06 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-06 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 6e-06 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 7e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 8e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 1e-05 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-05 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-05 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-05 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 8e-05 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-04 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 1e-04 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 7e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 7e-04 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 0.002 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.003 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 157 bits (397), Expect = 3e-46
Identities = 64/295 (21%), Positives = 107/295 (36%), Gaps = 31/295 (10%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
HY+ FFKL L YSC YF TLE+A+ A +L ++ LE G T+LD+G
Sbjct: 10 RSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIG 69
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWGS + +Y + + G+ S+ Q + ++ + + E +
Sbjct: 70 CGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG-WEEFDEPV 127
Query: 198 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH------ 242
DRI S+ FEH + Y KK +D + +H
Sbjct: 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLT 187
Query: 243 --FEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRM 299
+I F GG +P + + Y+ + V+ + G +Y T W +
Sbjct: 188 SPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL 247
Query: 300 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
+ + G++ + + ++LF V F K
Sbjct: 248 QAHKDEAIAL----KGQE----TCDIYMHYLRGCSDLFRDKYT---DVCQFTLVK 291
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 151 bits (383), Expect = 3e-44
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 24/288 (8%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
+ HY+L FF+L L YSC YF TL++A+ A ++L + L+ G T+LDVG
Sbjct: 11 QAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVG 70
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG+ + +KY + + + L++ +++A F+
Sbjct: 71 CGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP--V 128
Query: 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC--------HKTFAYHFEDTN 247
DRI SI FEH + Y + + D ++ +H + F
Sbjct: 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 188
Query: 248 DDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQTSEEWLKRMDNNLASI 306
+I F GG +PS ++ V HYA+T + W + N
Sbjct: 189 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQA 248
Query: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
+ Q+ + + + AE+F V F +K
Sbjct: 249 IAL--------QSEEVYERYMKYLTGCAEMFRIGYI---DVNQFTCQK 285
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 144 bits (364), Expect = 2e-41
Identities = 62/288 (21%), Positives = 105/288 (36%), Gaps = 24/288 (8%)
Query: 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVG 137
+ HY++ FF L YSC YF TLE+A+ A ++L ++ L+ G T+LD+G
Sbjct: 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIG 60
Query: 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASY 197
CGWG+ + + + G+ SK Q E+ ++ ++ +
Sbjct: 61 CGWGTTMRRA-VERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG-WEDFAEPV 118
Query: 198 DRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHH--------FCHKTFAYHFEDTN 247
DRI SIE FEH NY + K+ M D + V + FE
Sbjct: 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETAR 178
Query: 248 DDDWITKYFFTGGTMPSANLLLYFQDDVSVVD-HWLVNGKHYAQTSEEWLKRMDNNLASI 306
+I F GG +PS +++ + L HY +T W + +N
Sbjct: 179 FIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKA 238
Query: 307 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354
+ ++ + + F + + K
Sbjct: 239 IEV----TSEE----VYNRYMKYLRGCEHYFTDEM---LDCSLVTYLK 275
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 80.8 bits (198), Expect = 3e-18
Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 11/222 (4%)
Query: 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174
+ R++ G +LD+G G G + A+ + TGI S + +
Sbjct: 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAE 77
Query: 175 VLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233
L + V I D + + D + + + +++ +K ++ +
Sbjct: 78 ELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137
Query: 234 FCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQD-DVSVVDHWLVN----GKHY 288
+ T + T + L+ F D VV+ L + ++
Sbjct: 138 PYWR----QLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYE 193
Query: 289 AQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFF 330
A + ++ N ++ Y R F
Sbjct: 194 AAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECF 235
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.2 bits (192), Expect = 1e-16
Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 42/274 (15%)
Query: 73 TDKAKEQHYELPTSFFKLVL--------GKYFKYSCCYFSDASKTLEDAEKAMLELYCER 124
E ++P SF L Y + ++ + L ++
Sbjct: 152 IIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQ 211
Query: 125 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----- 179
+L+ G T +D+G G G+ + A + G + Q L+ +
Sbjct: 212 CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271
Query: 180 ------NVEIIVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
+ + + + + + + F ++ ++KI + K +
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKI-- 329
Query: 232 HHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQT 291
K+ N + + F +D VS W +G Y
Sbjct: 330 --ISLKSLRSLTYQIN--FYNVENIF---NRLKVQRYDLKEDSVS----WTHSGGEY--- 375
Query: 292 SEEWLKRMDNNL--ASIKPIMESTYGKDQAVKWT 323
++ + ++ + P + VK+T
Sbjct: 376 ---YISTVMEDVDESLFSPAARGRRNRGTPVKYT 406
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.4 bits (174), Expect = 1e-14
Identities = 44/231 (19%), Positives = 64/231 (27%), Gaps = 5/231 (2%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
L VLDVG G G L ++ A K K+ GI S ++ V
Sbjct: 27 HNRHLFKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECSSISDYAVKIVKANKLDHVVT 85
Query: 183 IIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238
II + E+ I E + +L KW+ D L+F
Sbjct: 86 IIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYV 145
Query: 239 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
A D G M + + V VVD + +
Sbjct: 146 TAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTV 205
Query: 299 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTH 349
+L P D Y+ F + G++ E TH
Sbjct: 206 KVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTH 256
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 3e-14
Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 37/242 (15%)
Query: 80 HYELPTSFFKLVLGK-------YFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHT 132
+ T + +L + + Y + + + ++ + ++ D
Sbjct: 95 NTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL 154
Query: 133 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---------NVEI 183
+D+G G G + L +A + G+ + ++ E R +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 184 IVADISTFEMEASYDR--IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 241
D + E + + F + LK+ MKE + +
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL-NF 273
Query: 242 HFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDN 301
N D T L + VS W Y +L +D
Sbjct: 274 RINSRNLSDIGTIMRVV--------ELSPLKGSVS----WTGKPVSY------YLHTIDR 315
Query: 302 NL 303
+
Sbjct: 316 TI 317
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 3e-13
Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ + VLDVGCG G LS++ A+ K+ G+ S+ + ++ +
Sbjct: 29 QNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTIT 87
Query: 183 IIVADISTFEMEASYDRIYSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCHKT 238
+I I + + E + + ++L +K++ + ++
Sbjct: 88 LIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISL 147
Query: 239 FAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
A + + D G M + + V V+D + + +
Sbjct: 148 VAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT 207
Query: 299 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA-VAELFGYNNGEEWMVTH 349
++L Y+ +F ++ G + TH
Sbjct: 208 SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTH 259
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (145), Expect = 8e-11
Identities = 36/226 (15%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189
VLDVGCG G LS++ A K+ + G+ S + E + ++ +
Sbjct: 39 DKIVLDVGCGTGILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE 97
Query: 190 TFEMEASYDRIYSIEM----FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED 245
+ I E + +L ++ E L+F
Sbjct: 98 DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157
Query: 246 TNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLAS 305
D+ G L+ + V V+ VN + ++LA
Sbjct: 158 YKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAF 217
Query: 306 IKPIMESTYGKDQAVKWTVYWRTFFIA--VAELFGYNNGEEWMVTH 349
+ +D ++ F A ++ G TH
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTH 263
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 57.1 bits (136), Expect = 6e-10
Identities = 26/257 (10%), Positives = 74/257 (28%), Gaps = 14/257 (5%)
Query: 78 EQHYELPTS---FFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCER----SRLEDG 130
E +Y+ S +F + G+ + +A E L+
Sbjct: 9 EIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQ 68
Query: 131 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADI 188
LD+G G+G + ++ +K+ I + + ++ L + +
Sbjct: 69 AKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL 127
Query: 189 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
+ SYD I+S + F H + + ++ ++ +K ++ + + ++
Sbjct: 128 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK---EDGIDKSSI 184
Query: 249 DDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKP 308
+ + L + + + + + + I
Sbjct: 185 QPILDRIKLHDMGSLGLYRSLAKECGLVTL-RTFSRPDSLVHHYSKVKAELIKRSSEIAS 243
Query: 309 IMESTYGKDQAVKWTVY 325
+ + +
Sbjct: 244 FCSPEFQANMKRGLEHW 260
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 54.7 bits (131), Expect = 2e-09
Identities = 13/119 (10%), Positives = 34/119 (28%)
Query: 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175
A + + ++ +L +G G+ ++A + I + + + C
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120
Query: 176 LELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234
E + A+ E + L+K ++K+ +
Sbjct: 121 RENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 54.6 bits (130), Expect = 2e-09
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 9/141 (6%)
Query: 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176
L L + + H VLD+G G G +L + + G+ +K E +
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK 61
Query: 177 ELQNVEIIVADISTFEMEASY-DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235
++NV + D I H + + ++++++ +K+D +
Sbjct: 62 GVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH- 120
Query: 236 HKTFAYHFEDTNDDDWITKYF 256
Y ED D+++
Sbjct: 121 -----YAPEDPVLDEFVNHLN 136
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 54.8 bits (131), Expect = 3e-09
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178
E + V+D+ G G LSL IA Y K+ I +F+ E + ++
Sbjct: 97 ERVRMAKVAKPDELVVDMFAGIGHLSLPIA-VYGKAKVIAIEKDPYTFKFLVENIHLNKV 155
Query: 179 QN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237
++ + D F E DRI + ++ + K K+ ++ H+ +
Sbjct: 156 EDRMSAYNMDNRDFPGENIADRI----LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPE 211
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 53.7 bits (128), Expect = 8e-09
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL 178
L ++ ++D GCG+G L L + K TGI + +T E R+
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LP 76
Query: 179 QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238
+ E + D + E+ YD HM + +L+K+ +K+ + +
Sbjct: 77 YDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWIS 136
Query: 239 FAYHF 243
+
Sbjct: 137 NMASY 141
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 51.1 bits (121), Expect = 3e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 132 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191
LD+GCG G SLY+A + + +E L N++ + D++T
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTA--WDKNPASMANLERIKAAEGLDNLQTDLVDLNTL 90
Query: 192 EMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237
+ YD I S + + + L+ + + K +
Sbjct: 91 TFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT 138
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 26/205 (12%), Positives = 57/205 (27%), Gaps = 6/205 (2%)
Query: 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ-KEFIEEQCRVL 176
L + + L+ VLDV G G ++ A K+ ++ K
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG 61
Query: 177 ELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236
Q + + + + H N + + + + +K+ L +
Sbjct: 62 HQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 237 KTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWL 296
N + Y S L + + + + ++ H E+W
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE---LHCFHKTFIFEDWC 178
Query: 297 KRMDNNLASIKPIMESTYGKDQAVK 321
RM+ + + + K
Sbjct: 179 DRMNVTTEKKQELSDFIKSKPTEYY 203
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 49.8 bits (118), Expect = 8e-08
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178
L + +DVGCG G ++ + ++ I + E + L
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVT--LELAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 179 -QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235
NV ++ D + D ++ + I +K + V
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL---RIIKDKLKPGGRIIVTAIL 136
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 49.5 bits (118), Expect = 2e-07
Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 36/207 (17%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE--------------- 167
ER+ + V+D+GCG G S Y + ++ G+ E
Sbjct: 60 ERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRL 119
Query: 168 FIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 227
+ + + ++ DI + + ++ +L + W+ +T
Sbjct: 120 QSGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLR----------VLNLVENWLSNNT 169
Query: 228 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM--PSANLLLYFQDDVSVVDHWLVNG 285
FC K + + + G + P + + VS +V+
Sbjct: 170 -----QFCVKVLNPYMSSVIEKMEALQRKHGGALVRNPLSRNSTHEMYWVSNASGNIVSS 224
Query: 286 KHYAQTSEEWLKRMDNNLASIKPIMES 312
S + R K E
Sbjct: 225 V--NMISRMLINRFTM--RHKKATYEP 247
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 46.2 bits (108), Expect = 2e-06
Identities = 26/214 (12%), Positives = 70/214 (32%), Gaps = 8/214 (3%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
LD+ CG G+L+ + K+ N + + + + + L+ +
Sbjct: 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ 91
Query: 184 IVADISTFEMEASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYH 242
+++++ + S + + K +S +KE + + +
Sbjct: 92 DISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151
Query: 243 FEDT----NDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKR 298
+ +DD+ + + + +F D + + A E+ K
Sbjct: 152 LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKY 211
Query: 299 MDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA 332
+ + +I ++ Y + K+T R ++
Sbjct: 212 LKHGQLNILDKVDC-YSNKKVEKFT--ERITYLV 242
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 3e-06
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 93 GKYFKYSCCYFSDASK---TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQ 149
GKY + + + +++ E +K + + + +L +G G G + L I
Sbjct: 1 GKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 60
Query: 150 KYSNC------KITGICNSKTQKE----------FIEEQCRVLELQNVEIIVADISTFEM 193
K + S Q +E + + + +
Sbjct: 61 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120
Query: 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 243
+D I+ I+M ++K+ LK + + + + +
Sbjct: 121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 170
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 3e-06
Identities = 42/275 (15%), Positives = 77/275 (28%), Gaps = 41/275 (14%)
Query: 93 GKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS 152
G+ + Y D + + +L L R H VLDV CG G S+ + ++
Sbjct: 24 GEAARVWQLYIGDTRSRTAEYKAWLLGLL----RQHGCHRVLDVACGTGVDSIMLVEEGF 79
Query: 153 NCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-------ADISTFEMEASYDRIYSIEM 205
+ + + E R E + ++ D + I
Sbjct: 80 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139
Query: 206 FEHMKN-------YQNLLKKISKWMKEDTLLFVHHFC------------HKTFAYHFEDT 246
F H+ + ++ LK I+ ++ LL + H K Y + T
Sbjct: 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLT 199
Query: 247 NDDDWITKYFFTGGTMPSANLLLYFQDD-----VSVVDHWLVNGKHYAQTSEEWLKRMDN 301
D M + + + L H + E ++
Sbjct: 200 KDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFG 259
Query: 302 NLASIKPIMESTYGKDQAVKWT-VYWRTFFIAVAE 335
S G + + Y +FI V +
Sbjct: 260 GRCQH-----SVLGDFKPYRPGQAYVPCYFIHVLK 289
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 45.1 bits (105), Expect = 3e-06
Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 15/160 (9%)
Query: 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE 177
L+ Y + G VL CG +++ + + + + ++ F E +
Sbjct: 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI 68
Query: 178 LQNVEIIVADISTFEM------------EASYDRIYSIEMFEHMK--NYQNLLKKISKWM 223
+ V E+ Y + + ++ + M
Sbjct: 69 TSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM 128
Query: 224 KED-TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTM 262
+ + L + + + W+ + +
Sbjct: 129 PQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEV 168
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 45.4 bits (107), Expect = 3e-06
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQN 180
R L G +L+VG G G++S YI +T + + + +
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137
Query: 181 -VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235
V +DI+ F + YD + + + N ++KI+ MK ++ +
Sbjct: 138 NVRTSRSDIADFISDQMYDA-----VIADIPDPWNHVQKIASMMKPGSVATFYLPN 188
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.7 bits (104), Expect = 6e-06
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 8/171 (4%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186
++ VLD+ CG G S + ++ G+ S+ E + E I+
Sbjct: 35 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 187 DISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFE 244
+ ++D + I+ H + K++ + +K ++ + +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 245 DT---NDDDWITKYFFTGGTMPSANLLLYFQDDVSV-VDHWLVNGKHYAQT 291
++ WI+K QD V + W G
Sbjct: 153 ESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAK 203
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.2 bits (103), Expect = 7e-06
Identities = 15/119 (12%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL 178
++ E ++ +LD+GCG+G + + +A + + + I + + L+
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDN 101
Query: 179 QNVEIIVADISTFEMEASYDRIYSIEMFEH-MKNYQNLLKKISKWMKEDTLLFVHHFCH 236
++ ++ +D+ + Y++I + + ++++ + +K++ ++V
Sbjct: 102 YDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.3 bits (103), Expect = 8e-06
Identities = 21/146 (14%), Positives = 54/146 (36%)
Query: 113 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 172
AE +E + + VLD+ CG G +L +A++ + + + +
Sbjct: 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAK 84
Query: 173 CRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232
R L+++ ++ V +I+ + +S M+ ++ + L K+++ +K +
Sbjct: 85 ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 233 HFCHKTFAYHFEDTNDDDWITKYFFT 258
C ++ +
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD 187
+ VLD+GCG G + A G+ SK + ++ + +
Sbjct: 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ---VTFCVASSH 139
Query: 188 ISTFEMEASYDRIYSIEMFEHMKNYQNLLKK 218
F + S D I I + ++K
Sbjct: 140 RLPFS-DTSMDAIIRIYAPCKAEELARVVKP 169
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Query: 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188
D ++VG G G+ +A++ + GI K+ + ++ + + N++++ D
Sbjct: 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG 90
Query: 189 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
S I + + + +K + + L + HF+ N
Sbjct: 91 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKR-RLTYKTFLDTFKRILPENGEIHFKTDNR 149
Query: 249 D 249
Sbjct: 150 G 150
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.8 bits (103), Expect = 1e-05
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEE---QCRVLE 177
+ G VL+ G G G+L+L + + ++ E C
Sbjct: 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 178 LQNVEIIVADISTFEM-EASYDRIY--SIEMFEHMKNYQNLLKKISKWM 223
N ++V+D++ E+ + S DR + +E + LL M
Sbjct: 149 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLM 197
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 15/105 (14%), Positives = 28/105 (26%)
Query: 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 186
L VL +G G+ ++A I + S E + E R + A
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113
Query: 187 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231
+ + L ++KE + +
Sbjct: 114 SKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVI 158
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 41.8 bits (97), Expect = 4e-05
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 189
+L++G G + + + + IT + S+ + + + + I +
Sbjct: 21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFE 74
Query: 190 TFEMEASYDRIYSIEMFEHMKNYQNLLKKI-SKWMKEDTLLFVH 232
++ YD I + EH+ + LLK+I W+ E LF+
Sbjct: 75 DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 1/120 (0%)
Query: 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCR 174
A + + ++ G +VL +G G+ + +++ KI GI S +
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 175 VLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234
+ A E + L+ ++K +
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 41.0 bits (95), Expect = 8e-05
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
Query: 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188
D ++VG G G +A++ + GI K+ ++ + E QNV+++ D
Sbjct: 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA 88
Query: 189 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTND 248
T + + + + +K + L K + HF+ N
Sbjct: 89 DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKR-RLTYSHFLKKYEEVMGKGGSIHFKTDNR 147
Query: 249 D--DWITKYF 256
++ K F
Sbjct: 148 GLFEYSLKSF 157
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 12/182 (6%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVE 182
R + G +VLD+GCG G L + + G+ ++ + R ++ + V
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVF 77
Query: 183 IIVADIS--TFEMEASYDRIYSIEMFEHMKNYQNLLKK----ISKWMKEDTLLFVHHF-C 235
D ++ +D I S F + + L I++ ++ +
Sbjct: 78 FRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137
Query: 236 HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY---FQDDVSVVDHWLVNGKHYAQTS 292
+ + +D+ +P ++ Y D V+ + V+
Sbjct: 138 DVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGF 197
Query: 293 EE 294
+
Sbjct: 198 KR 199
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 11/108 (10%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 188
+G VLD+ G G L++ + + + N K Q + ++ +
Sbjct: 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA 73
Query: 189 STFEMEA-SYDRIYSIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHH 233
+ ++ + ++ + + E ++
Sbjct: 74 ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET 121
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 27/209 (12%), Positives = 54/209 (25%), Gaps = 49/209 (23%)
Query: 97 KYSCCYFSDASKTLEDAE--KAMLELYCER--SRLEDGHTVLDVGCGWGSLSLYIAQKYS 152
Y Y+S +AE K LE + G T++D+G G + A S
Sbjct: 15 DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVL-AACDS 73
Query: 153 NCKITGICNSKTQKEFIEEQCR-----------------------------------VLE 177
IT + +E +E+ + V
Sbjct: 74 FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133
Query: 178 LQNVEIIVADISTFEMEASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHH 233
+ ++ + + + D + ++ E Y+ L ++ +K L
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193
Query: 234 FCHKTFAYHFEDTNDDDWITKYFFTGGTM 262
+ G +
Sbjct: 194 TLRLPSY-----MVGKREFSCVALEKGEV 217
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 38.6 bits (89), Expect = 7e-04
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 122 CERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-Q 179
+++G ++D G G G++ +A+ S+ K+ + + E L +
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 155
Query: 180 NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235
V I V DIS E +F + + N + K + +K
Sbjct: 156 RVTIKVRDISEGFDEK-----DVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 37.3 bits (85), Expect = 0.002
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 7/135 (5%)
Query: 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE 182
+ VLDVG G G + IA + + + T + + + V
Sbjct: 75 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 134
Query: 183 IIVADISTFEMEAS-YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAY 241
+ D + + + + ++ +L+ + ++ L V
Sbjct: 135 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV---- 190
Query: 242 HFEDTNDDDWITKYF 256
E D + +
Sbjct: 191 --EGDGADRFFSTLL 203
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 36.7 bits (83), Expect = 0.003
Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 11/213 (5%)
Query: 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEI 183
L++ VLD+G G G + + ++ + SK E E+ +NV
Sbjct: 37 EEYLKNPCRVLDLGGGTG--KWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KNVVE 90
Query: 184 IVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHF 243
A+ F A + ++ +++N +I + + D LL TF
Sbjct: 91 AKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQM 150
Query: 244 EDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNG----KHYAQTSEEWLKRM 299
+ + D IT++ T T L + D + G E+
Sbjct: 151 IEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIGVMEYPDER 210
Query: 300 DNNLASIKPIMESTYGKDQAVKWTVYWRTFFIA 332
+ +E +D+ + W FF+
Sbjct: 211 ISEREETIFRLEQELSRDRNIIWK-ADHIFFVL 242
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.93 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.93 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.87 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.86 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.81 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.8 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.8 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.77 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.77 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.77 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.76 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.75 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.75 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.74 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.72 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.72 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.71 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.69 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.68 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.66 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.65 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.63 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.62 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.61 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.61 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.6 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.59 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.58 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.57 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.56 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.54 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.52 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.51 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.5 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.48 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.47 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.46 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.46 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.45 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.42 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.4 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.39 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.38 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.33 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.32 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.31 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.28 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.23 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.23 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.2 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.18 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.17 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.15 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.13 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.1 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.99 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.97 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.89 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.87 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.84 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.82 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.82 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.79 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.76 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.76 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.74 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.72 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.69 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.69 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.56 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.53 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.49 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.41 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.4 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.11 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.88 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.67 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.65 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.37 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.31 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.22 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.18 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.16 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.02 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.99 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.69 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.56 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.52 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.5 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.45 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.41 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.36 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.24 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.11 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.11 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.95 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.9 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.82 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.82 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.8 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.74 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.67 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.65 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.54 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.39 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.35 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.2 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.11 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.05 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.69 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.59 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.54 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.42 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.18 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.11 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.97 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.77 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.72 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.57 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.49 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.38 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.37 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.34 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.22 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.93 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.93 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.28 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.39 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.15 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.99 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.69 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.58 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.52 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.29 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.27 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.21 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.93 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.87 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.62 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.03 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 88.74 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.62 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 88.54 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.42 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 88.4 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.17 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.14 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.08 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.86 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.6 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 87.59 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 87.35 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 86.77 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 86.57 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.42 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.98 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.79 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 85.36 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.01 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 84.53 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 84.05 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 83.42 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.94 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.87 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.06 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.49 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 81.24 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 81.17 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.4e-47 Score=340.81 Aligned_cols=265 Identities=25% Similarity=0.436 Sum_probs=231.9
Q ss_pred hhhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCc
Q 018346 75 KAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNC 154 (357)
Q Consensus 75 ~~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~ 154 (357)
+.+.+|||++++||+.+||++++|||++|..+..++.++|.++++.+++++++++|.+|||||||+|.++..+++++ ++
T Consensus 7 ~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~ 85 (291)
T d1kpia_ 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DV 85 (291)
T ss_dssp HHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CC
T ss_pred hHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-Cc
Confidence 45689999999999999999999999999988999999999999999999999999999999999999999999887 68
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccchh---------hHHHHHHHHHHhcc
Q 018346 155 KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK---------NYQNLLKKISKWMK 224 (357)
Q Consensus 155 ~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~~~~~Lk 224 (357)
+|+|+++|+++++.+++++...|+. ++.+...|.... +++||.|+|..+++|+. +++.+++++.++||
T Consensus 86 ~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk 163 (291)
T d1kpia_ 86 NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP 163 (291)
T ss_dssp EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC
T ss_pred ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998885 788888887543 37899999999999984 47899999999999
Q ss_pred cCceEEEEeccCCCCCcccc--------cCCccchhhhcccCCCCCCCHHHHHhhcC--CcEEEEeEEecCccHHHHHHH
Q 018346 225 EDTLLFVHHFCHKTFAYHFE--------DTNDDDWITKYFFTGGTMPSANLLLYFQD--DVSVVDHWLVNGKHYAQTSEE 294 (357)
Q Consensus 225 pgG~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~w~~~g~~y~~tl~~ 294 (357)
|||++++++++.+....... .....+|+.+++||+|.+|+...+....+ ++. +..|...|.||.+|+..
T Consensus 164 pgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~-v~~~~~~~~hYa~TL~~ 242 (291)
T d1kpia_ 164 DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWK-VERYHRIGANYVPTLNA 242 (291)
T ss_dssp TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCE-EEEEEECGGGHHHHHHH
T ss_pred CCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCHHHHHhhhcccccc-cceeeeccccHHHHHHH
Confidence 99999999988765432211 01234699999999999999888777653 455 56678889999999999
Q ss_pred HHHHHHhcHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 295 WLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 295 w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
|+++|.++..++.++ |++ .++++|++|+.+|+++|+.|+ .++.||+++|
T Consensus 243 W~~~f~~~~~ei~~l----~g~----~~~r~W~~yl~~ce~~F~~~~---~~v~q~~l~K 291 (291)
T d1kpia_ 243 WADALQAHKDEAIAL----KGQ----ETCDIYMHYLRGCSDLFRDKY---TDVCQFTLVK 291 (291)
T ss_dssp HHHHHHHTHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHTTS---SEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHh----cCh----HHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEC
Confidence 999999999998876 343 588999999999999999999 5699999987
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.9e-46 Score=337.47 Aligned_cols=264 Identities=26% Similarity=0.464 Sum_probs=231.8
Q ss_pred hhhhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 76 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 76 ~~~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
.++.|||++++||+.+||++++|||++|..+..+++++|.++++.+++++++++|.+|||||||+|..++++++.+ +++
T Consensus 9 ~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~ 87 (285)
T d1kpga_ 9 NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVN 87 (285)
T ss_dssp HHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCE
T ss_pred HHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-Ccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEE
Q 018346 156 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
|+|+++|+++++.|++++...|+ +++++..+|..+++ ++||.|+|..+++|+ +++..+++++.++|||||++++.
T Consensus 88 v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 88 VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 99999999999999999988887 48999999988764 689999999999999 67789999999999999999999
Q ss_pred eccCCCCCc--------ccccCCccchhhhcccCCCCCCCHHHHHhhc--CCcEEEEeEEecCccHHHHHHHHHHHHHhc
Q 018346 233 HFCHKTFAY--------HFEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNN 302 (357)
Q Consensus 233 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~ 302 (357)
+++....+. ........+|+.+++||+|.+|+...+.... .++. +..+...+.||.+|+..|.++|.++
T Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~-v~~~~~~~~hYarTl~~W~~~f~~~ 244 (285)
T d1kpga_ 166 TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFT-VTRVQSLQPHYAKTLDLWSAALQAN 244 (285)
T ss_dssp EEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCE-EEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred EEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchh-hcccccchhhHHHHHHHHHHHHHHH
Confidence 887533221 1111223579999999999999988877653 4555 4556777999999999999999999
Q ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 018346 303 LASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 354 (357)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 354 (357)
..++.++ +++ .++++|+.|+.+|+++|+.|+ .++.||+++|
T Consensus 245 ~~ei~~~----~~~----~~~rrw~~Yl~~c~~~F~~g~---~~v~q~~~~k 285 (285)
T d1kpga_ 245 KGQAIAL----QSE----EVYERYMKYLTGCAEMFRIGY---IDVNQFTCQK 285 (285)
T ss_dssp HHHHHHH----SCH----HHHHHHHHHHHHHHHHHHTTS---EEEEEEEEEC
T ss_pred HHHHHHh----cCH----HHHHHHHHHHHHHHHHHHCCC---CeEEEEEEEC
Confidence 9998876 453 578899999999999999999 7799999997
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.3e-46 Score=336.10 Aligned_cols=264 Identities=24% Similarity=0.416 Sum_probs=227.6
Q ss_pred hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEE
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 157 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~ 157 (357)
+.|||++++||+.+||++|+|||++|..+.++|.++|.++++.++++++++++.+|||||||+|.++..+++.. +++|+
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~ 79 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVI 79 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEE
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999886 68999
Q ss_pred EEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEec
Q 018346 158 GICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 158 ~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
|+|+|+++++.|+++++..++. ++.+...|..+++ ++||.|++..+++|+ +++..+++++.++|||||++++.++
T Consensus 80 gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 80 GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 9999999999999999999884 7888888877653 789999999999999 5678999999999999999999876
Q ss_pred cCCCCCcc--------cccCCccchhhhcccCCCCCCCHHHHHhhc--CCcEEEEeEEecCccHHHHHHHHHHHHHhcHH
Q 018346 235 CHKTFAYH--------FEDTNDDDWITKYFFTGGTMPSANLLLYFQ--DDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 304 (357)
Q Consensus 235 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~ 304 (357)
........ .......+|+.+++||+|.+|+...+.... .++.+ ..+...|.||.+||+.|+++|.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l~~~~e~aGf~v-~~~~~~~~hYa~TL~~W~~~f~~~~~ 236 (280)
T d2fk8a1 158 VSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTV-PEPLSLRPHYIKTLRIWGDTLQSNKD 236 (280)
T ss_dssp ECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBC-CCCEECHHHHHHHHHHHHHHHHHTHH
T ss_pred eccCcchhhhcccccccccccccchhhhhccCCCcccchHhhhhhHHhhcccc-ceeeecccCHHHHHHHHHHHHHHHHH
Confidence 54332110 011123479999999999999988776653 34554 44566689999999999999999999
Q ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 018346 305 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 356 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 356 (357)
++.++ +++ .++++|+.|+.+|+++|+.|. +++.|++++||-
T Consensus 237 ~i~~~----~~~----~~~r~w~~yl~~c~~~F~~~~---~~~~q~~~~kpg 277 (280)
T d2fk8a1 237 KAIEV----TSE----EVYNRYMKYLRGCEHYFTDEM---LDCSLVTYLKPG 277 (280)
T ss_dssp HHHHH----SCH----HHHHHHHHHHHHHHHHHHTTS---CEEEEEEEECTT
T ss_pred HHHHh----cCH----HHHHHHHHHHHHHHHHHhCCC---ccEEEEEEEcCC
Confidence 98775 343 578899999999999999999 789999999973
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-26 Score=205.67 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=158.7
Q ss_pred CCHHHHHHHHHHHHhh----hhhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCcc
Q 018346 25 LPDAVIRRLSRLLLGG----RLRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYS 99 (357)
Q Consensus 25 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~ 99 (357)
.|...++.+|.+.+.. .+.....+.++++...+.+++.++ +++|+||++|+ ..||+....+.+.+++||
T Consensus 18 ~p~~da~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~g~PlqYI~G~--~~F~~~~~~v~~~VlIPR---- 91 (274)
T d2b3ta1 18 SPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGV--REFWSLPLFVSPATLIPR---- 91 (274)
T ss_dssp CHHHHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCE--EEETTEEEECCTTSCCCC----
T ss_pred CHHHHHHHHHHHHhCcCHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCcChhhhcCc--EEEeeeEEEEeccccccc----
Confidence 5667777777777663 334455667788889999999988 99999999999 999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 018346 100 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 179 (357)
Q Consensus 100 ~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~ 179 (357)
++++.+.+. .+.... ..+.+|||+|||+|++++.++...|+++|+++|+|+.+++.|++|+...+++
T Consensus 92 -----peTE~lv~~-------~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~ 158 (274)
T d2b3ta1 92 -----PDTECLVEQ-------ALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK 158 (274)
T ss_dssp -----TTHHHHHHH-------HHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred -----cchhhhhhh-------Hhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc
Confidence 777655543 333332 3567999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEeccCCCccccCccEEEEcccccc-------------------------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 180 NVEIIVADISTFEMEASYDRIYSIEMFEH-------------------------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 180 ~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~-------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|+|+++|+.+.....+||+|+||+++-. +..+.++++.+.++|+|||.+++++.
T Consensus 159 ~v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 159 NIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp SEEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cceeeecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 89999999987433368999999998732 12367789999999999999999754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.93 E-value=1.1e-24 Score=196.00 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=158.0
Q ss_pred hhhcCC--ChHHHHHhh-cCCCCccccccCCC--CCCHHHHHHHHHHH----HHHHcCCCCCCEEEEECCcccHHHHHHH
Q 018346 78 EQHYEL--PTSFFKLVL-GKYFKYSCCYFSDA--SKTLEDAEKAMLEL----YCERSRLEDGHTVLDVGCGWGSLSLYIA 148 (357)
Q Consensus 78 ~~~y~~--~~~~~~~~l-~~~~~y~~~~f~~~--~~~l~~~~~~~l~~----l~~~~~~~~~~~vLDiGcG~G~~~~~la 148 (357)
..+||. ...||+.++ +..+++ ++|..+ ...+.+++.+..+. +....++.++.+|||||||+|..+..++
T Consensus 9 ~~~y~~~~~~~fy~~~w~g~~~h~--G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la 86 (282)
T d2o57a1 9 EIYYDDDDSDRFYFHVWGGEDIHV--GLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLV 86 (282)
T ss_dssp HHTHHHHHHHHHHHHHHTTSCCCS--CCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHH
T ss_pred HHhcCCchhHHHHHHHcCCCCcee--eecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhh
Confidence 567887 568998877 455554 777653 34555655544444 4444578899999999999999999999
Q ss_pred HHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccC
Q 018346 149 QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 226 (357)
Q Consensus 149 ~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg 226 (357)
+++ +++|+|+|+|+.+++.|+++....|++ +++|+++|+.+++++ ++||+|++..+++|++++..+++++.++||||
T Consensus 87 ~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg 165 (282)
T d2o57a1 87 RKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR 165 (282)
T ss_dssp HHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred ccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCC
Confidence 875 789999999999999999999999885 899999999998766 88999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCCcccccCCccchhhhcccCCCCCCCHHHHHh-h-cCCcEEEEeEEecCccHHHHHHHHHHHHHhcHH
Q 018346 227 TLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 304 (357)
Q Consensus 227 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~~~~~~w~~~g~~y~~tl~~w~~~l~~~~~ 304 (357)
|++++..+......... ....+......+ .+++...... + ..++..+.. .....++..++..|...+.....
T Consensus 166 G~l~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~s~~~~~~~l~~~Gf~~i~~-~d~~~~~~~~~~~~~~~~~~~~~ 239 (282)
T d2o57a1 166 GVMAITDPMKEDGIDKS---SIQPILDRIKLH--DMGSLGLYRSLAKECGLVTLRT-FSRPDSLVHHYSKVKAELIKRSS 239 (282)
T ss_dssp EEEEEEEEEECTTCCGG---GGHHHHHHHTCS--SCCCHHHHHHHHHHTTEEEEEE-EECHHHHHHHHHHHHHHHHHTHH
T ss_pred cEEEEEEeecCCCCchh---HHHHHHHHhccC--CCCCHHHHHHHHHHcCCceEEE-EECcHhHHHHHHHHHHHHHHHHH
Confidence 99999877655432211 122333333222 2334333222 2 245554443 23334566667777766665544
Q ss_pred HH
Q 018346 305 SI 306 (357)
Q Consensus 305 ~~ 306 (357)
.+
T Consensus 240 ~~ 241 (282)
T d2o57a1 240 EI 241 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2e-22 Score=175.98 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
.++.+++..+++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.+++.++++|+.+++++ +
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence 4556778889999999999999999999999987 579999999999999999999999888999999999998766 8
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+||+|+|..+++|++++..+++++.++|||||.+++..+..+
T Consensus 82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred ccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 899999999999999999999999999999999999776544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=1.7e-22 Score=175.80 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=107.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
+..+++..++.++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|++++...+.++++|+++|+.+++++ ++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 345777888999999999999999999999987 579999999999999999999998888999999999998765 88
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
||+|+|..+++|++++..+++++.++|||||++++.+++.+
T Consensus 82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99999999999999999999999999999999999876554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=1.6e-21 Score=172.04 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHhhh---hhcCCCCCHHHHHHHHHHHHHHh-ccCCccccchhhhhhhcCCChHHHHHhhcCCCCccc
Q 018346 25 LPDAVIRRLSRLLLGGR---LRSGYKPSAELQLSDLLQFAHSL-REMPIAIQTDKAKEQHYELPTSFFKLVLGKYFKYSC 100 (357)
Q Consensus 25 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~l~~~~~y~~ 100 (357)
.|...++.++.+.+... +........+++...+.++++++ +++|.||++|+ ..||+..+.+.+.+++||
T Consensus 20 ~~~lda~lll~~~l~~~~~~l~~~~~~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~--~~F~~~~f~v~~~vlIPR----- 92 (271)
T d1nv8a_ 20 TSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGE--KEFMGLSFLVEEGVFVPR----- 92 (271)
T ss_dssp CHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTE--EEETTEEEECCTTSCCCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHhhCCCCCCHHHHHHHHHHHHHhhCCCChhhhcCc--EEEeeeEEEEecCccCch-----
Confidence 36666777777766521 12234556788889999999888 99999999999 999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 018346 101 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ- 179 (357)
Q Consensus 101 ~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~- 179 (357)
++++.+.+....... ..+..+|+|+|||+|.++..+++ .|+++|+++|+|+.+++.|++|++.+++.
T Consensus 93 ----peTE~lv~~~~~~~~-------~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~ 160 (271)
T d1nv8a_ 93 ----PETEELVELALELIR-------KYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSD 160 (271)
T ss_dssp ----TTHHHHHHHHHHHHH-------HHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred ----hhhhhhhhhhhhhhc-------cccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCc
Confidence 777666654222211 12456899999999999999885 58999999999999999999999999885
Q ss_pred CeEEEEeccCCCccc--cCccEEEEcccccc-----------------------hhhHHHHHHHHHHhcccCceEEEEec
Q 018346 180 NVEIIVADISTFEME--ASYDRIYSIEMFEH-----------------------MKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 180 ~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.+..+|+.+.... ++||+|+||+|+-. +..++++ +.++|+|||++++++.
T Consensus 161 ~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 161 RFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG 237 (271)
T ss_dssp SEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC
T ss_pred eeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC
Confidence 678888888774332 68999999998621 1223343 4578999999999875
Q ss_pred c
Q 018346 235 C 235 (357)
Q Consensus 235 ~ 235 (357)
.
T Consensus 238 ~ 238 (271)
T d1nv8a_ 238 E 238 (271)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.1e-21 Score=172.37 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM 193 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 193 (357)
...+..+.+.+++.++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.|++++...|++ +++|+.+|+.++..
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc
Confidence 3466678888899999999999999999999999876 589999999999999999999999885 79999999998755
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCCC
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 239 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 239 (357)
+++||+|+|..+++|++++..+++++.++|||||++++..+.....
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~ 143 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL 143 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTC
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCC
Confidence 5889999999999999999999999999999999999988765543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.3e-20 Score=165.82 Aligned_cols=143 Identities=15% Similarity=0.348 Sum_probs=115.7
Q ss_pred hhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEE
Q 018346 79 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 158 (357)
Q Consensus 79 ~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~ 158 (357)
.+|+.-.++|+........ .. ......+..++......++.+|||||||+|..+..+++. +.+|+|
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~g 68 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIE-----------RV-KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER--GYEVVG 68 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHH-----------TH-HHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT--TCEEEE
T ss_pred chhHhhHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc--ceEEEE
Confidence 4677777778776543210 11 122345666777777778889999999999999999987 679999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEc-ccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 159 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI-EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 159 vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~-~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|+|+.|++.|++++...+. +++++++|+.+++++++||+|+|. .+++++ ++...+++++.++|||||++++..++
T Consensus 69 vD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 69 LDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Eeeccccccccccccccccc-cchheehhhhhcccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 99999999999999998877 899999999998877899999986 466666 56789999999999999999998765
Q ss_pred C
Q 018346 236 H 236 (357)
Q Consensus 236 ~ 236 (357)
.
T Consensus 148 ~ 148 (251)
T d1wzna1 148 W 148 (251)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=4.1e-20 Score=159.65 Aligned_cols=118 Identities=21% Similarity=0.337 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 194 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 194 (357)
...+..++.+. +.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++.++.+|+.+++.+
T Consensus 24 ~~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~ 99 (226)
T d1ve3a1 24 IETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFE 99 (226)
T ss_dssp HHHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSC
T ss_pred HHHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-ccccccccccccccc
Confidence 34455555542 457789999999999999999986 78999999999999999999988776 788999999998766
Q ss_pred -cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 195 -ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++||+|+|..+++|++ +..++++++.++|||||.+++..++.
T Consensus 100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 8899999999999985 67889999999999999999987764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=3.5e-19 Score=151.09 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=96.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.+++++...+++++.+...|+....++++||+|+++.+++|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence 4459999999999999999988 78999999999999999999999998889999999998777789999999999999
Q ss_pred hh--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 209 MK--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 209 ~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++ +..++++++.++|+|||.+++..+..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 84 56789999999999999999977654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.80 E-value=1.2e-19 Score=159.29 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 196 (357)
.+..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. +++|+++|+.+++.+++
T Consensus 26 ~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~ 101 (246)
T d1y8ca_ 26 FIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRK 101 (246)
T ss_dssp HHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCC
T ss_pred HHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccccc
Confidence 3444444433 34579999999999999999988 67999999999999999999988887 89999999998876688
Q ss_pred ccEEEEc-ccccch---hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSI-EMFEHM---KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~-~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+|. .+++++ ++..++++++.++|||||.+++...+.
T Consensus 102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 9999985 566665 567789999999999999999876544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=1.5e-19 Score=161.78 Aligned_cols=117 Identities=21% Similarity=0.359 Sum_probs=102.9
Q ss_pred HHHHHHHc-CCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 118 LELYCERS-RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
++.+++.+ .+.++.+|||+|||+|..+..+++..| +.+|+|+|+|+.+++.|+++....+. +++|.++|+.++++++
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~ 93 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELND 93 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSS
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccC
Confidence 33444432 456778999999999999999998775 57999999999999999999988877 8999999999887667
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+||+|+|+.+++|++++..+++++.++|||||.+++.++.
T Consensus 94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 8999999999999999999999999999999999998865
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.8e-19 Score=154.41 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=95.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 204 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~ 204 (357)
...++.+|||||||+|..+..++... ..+|+|+|+|+.+++.|++++...+.++++|+++|+.+++++ ++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34567899999999999999987665 468999999999999999998887766889999999998765 7899999999
Q ss_pred cccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 205 MFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 205 ~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++|+++ ..++++++.++|||||.+++..+..
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~ 169 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 169 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence 9999965 4589999999999999999986543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=3.9e-18 Score=144.07 Aligned_cols=112 Identities=15% Similarity=0.324 Sum_probs=97.3
Q ss_pred HHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCccccCcc
Q 018346 121 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASYD 198 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD 198 (357)
+++.+.+.++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++++..++++ ++++..+|+.+...+++||
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD 121 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYN 121 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEE
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCce
Confidence 566677888999999999999999999987 458999999999999999999988874 6899999998744347899
Q ss_pred EEEEcccccchhh-HHHHHHHHHHhcccCceEEEEec
Q 018346 199 RIYSIEMFEHMKN-YQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 199 ~Ii~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+|++++++++..+ ...+++.+.++|||||.+++...
T Consensus 122 ~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 122 KIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp EEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 9999999987754 57899999999999999988654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.77 E-value=3.3e-18 Score=147.91 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=96.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSI 203 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~ 203 (357)
.+++.+|||+|||+|..+..+++.. |+++|+|+|+|+.|++.|+++++..+.. ++.+..+|..+.+. ..+|+|+++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~ 115 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILN 115 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEe
Confidence 3578899999999999999999864 7889999999999999999998877653 78888888877654 578999999
Q ss_pred ccccch--hhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 204 EMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 204 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
.+++++ ++..++++++.++|||||.+++.++....
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccc
Confidence 999988 57889999999999999999998765543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.77 E-value=1.4e-18 Score=146.72 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=98.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC------------CCeEEEEec
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------------QNVEIIVAD 187 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d 187 (357)
..+..+.+.++.+|||+|||+|..+..|+++ +.+|+|+|+|+.+++.|+++++..+. .+++|.++|
T Consensus 11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHHcCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 3455567889999999999999999999998 89999999999999999998754321 256899999
Q ss_pred cCCCccc--cCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 188 ISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 188 ~~~~~~~--~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.+++.. ..||+|++..+++++. +....++++.++|||||.+++......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 9887543 6899999999999984 578899999999999999988766543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.7e-18 Score=151.19 Aligned_cols=111 Identities=18% Similarity=0.340 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
.+..++... ..++.+|||+|||+|..+..+++. +++|+|+|+|+.+++.|+++. . ..++.+|+.+++++ +
T Consensus 31 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~--~~~~~~~~~~l~~~~~ 101 (246)
T d2avna1 31 LIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----V--KNVVEAKAEDLPFPSG 101 (246)
T ss_dssp HHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----C--SCEEECCTTSCCSCTT
T ss_pred HHHHHHHHh-cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----c--cccccccccccccccc
Confidence 444444433 236789999999999999999976 789999999999999998753 2 23678999988776 8
Q ss_pred CccEEEEc-ccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSI-EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|+|. .+++|++++..+++++.++|||||.+++.+++.
T Consensus 102 ~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 102 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred cccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 89999985 689999999999999999999999999988653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.76 E-value=8.7e-19 Score=151.64 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=92.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.. +++.++.+|+.+.+++++||+|++..+++|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccccceeEe
Confidence 5678999999999999999877 5789999999999999987642 379999999988776789999999999999
Q ss_pred hhhHHHHHHHHH-HhcccCceEEEEeccCCC
Q 018346 209 MKNYQNLLKKIS-KWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 209 ~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~ 238 (357)
++++..++.++. ++|+|||.+++.+|+...
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~ 124 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANA 124 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCccc
Confidence 999999999998 789999999999886543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.75 E-value=4.3e-18 Score=142.78 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=97.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-AS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~ 196 (357)
..++..+.+.++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++..|+ ++++++++|+.+...+ ..
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHHhcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 34666778889999999999999999999876 56999999999999999999999998 4999999998876544 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|+++...++. ..+++.+.+.|||||++++...+.
T Consensus 101 ~D~v~~~~~~~~~---~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL---QEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp EEEEEESCCTTCH---HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred cCEEEEeCccccc---hHHHHHHHHHhCcCCEEEEEeecc
Confidence 9999999877654 678999999999999998876543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.75 E-value=5.9e-18 Score=148.85 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=93.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc--ccCccEEEEc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM--EASYDRIYSI 203 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~~~fD~Ii~~ 203 (357)
..++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|++++...+.. ++.|.++|+...+. .++||+|+|.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 4578899999999999999998873 468999999999999999998877653 79999999976543 3689999999
Q ss_pred ccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.+++|+ .+...+++++.++|||||++++.+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 999997 356789999999999999999987753
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.74 E-value=7.5e-18 Score=148.23 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 112 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 112 ~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
.........+++.+...++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++.... ++++|.++|+.++
T Consensus 76 ~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~ 152 (254)
T d1xtpa_ 76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETA 152 (254)
T ss_dssp HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGC
T ss_pred hhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc--ccceeEEcccccc
Confidence 3334455667777777788899999999999999988765 458999999999999999876533 3689999999988
Q ss_pred ccc-cCccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 192 EME-ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 192 ~~~-~~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+++ ++||+|++..+++|+++ ..++++++.+.|+|||.+++..+..
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~ 200 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 765 78999999999999955 4688999999999999999976543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.4e-17 Score=142.84 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-----------------CCCeE
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----------------LQNVE 182 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-----------------~~~v~ 182 (357)
.+.+.+.+.++.+|||+|||+|..+..|++. |.+|+|+|+|+.+++.|+++....+ ..+++
T Consensus 36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 3444456678899999999999999999987 8899999999999999988764321 13789
Q ss_pred EEEeccCCCccc--cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 183 IIVADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 183 ~~~~d~~~~~~~--~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+.++|+.+++.. +.||+|+...+++++ ++...+++++.++|||||.+++..+...
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 999999886543 789999999999998 5678899999999999999988877653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=9.2e-18 Score=146.88 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEccccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|++.+++ +++++++|+.+....++||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhccccc
Confidence 57899999999999999988875 68999999999999999999999998 6789999987643347899999986554
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
....+++.+.++|||||+++++.+
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEec
Confidence 456788999999999999998644
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=1.2e-17 Score=142.47 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 207 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~~ 207 (357)
++.+|||||||+|.++..++ +++|+|+|+.+++.|+++ ++.++++|+.+++.+ ++||+|+|..+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 102 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC 102 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence 45689999999999887663 468999999999998763 689999999988765 7899999999999
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
|++++..+++++.++|+|||.+++..++...
T Consensus 103 h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 103 FVDDPERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp GSSCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred cccccccchhhhhhcCCCCceEEEEecCCcc
Confidence 9999999999999999999999999886543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.72 E-value=3.6e-17 Score=143.82 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCc
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASY 197 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~f 197 (357)
+.+++..+..+..+|||||||+|..+..+++++|+.+++++|+ +.+++.++++....++ ++++++.+|+.+.. +.+|
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~-~~~~ 147 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL-PRKA 147 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SSCE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc-ccch
Confidence 3466677777889999999999999999999999999999998 6789999999998887 48999999987643 3679
Q ss_pred cEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++..++|++++ ..+++++++++|||||++++....
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 99999999999954 457899999999999999987653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=3.6e-17 Score=139.83 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
++..+++.++++++.+|||||||+|..+..+++.. +..+|+++|+++++++.|+++++..+++++.++++|..+..+.
T Consensus 63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 45567888899999999999999999999999875 5789999999999999999999999998999999998875444
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++||+|++..+++++++ .+.+.|||||++++...
T Consensus 143 ~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp CCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEBC
T ss_pred cchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEEC
Confidence 78999999999988853 46678999999988543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5.8e-17 Score=143.66 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
+...+.+.. ..++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|+++. +++.|.++|+.+++++ +
T Consensus 73 ~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~ 146 (268)
T d1p91a_ 73 IVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDT 146 (268)
T ss_dssp HHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTT
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCC
Confidence 334444444 34578999999999999999999999999999999999999887652 3899999999998876 8
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
+||+|++..+.++ ++++.++|||||.+++.+++...
T Consensus 147 sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 147 SMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp CEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred CEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 8999999988776 35789999999999999987654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=6.2e-17 Score=141.81 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=101.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHc--C-CCCeEEEEeccCCCc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVL--E-LQNVEIIVADISTFE 192 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~--~-~~~v~~~~~d~~~~~ 192 (357)
-...++..+++.||.+|||+|||+|.++..|++. .|+.+|+++|+++++++.|++|++.. + .+++.+.++|+.+.+
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 3456788889999999999999999999999987 48889999999999999999998864 2 359999999998765
Q ss_pred cc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 193 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 193 ~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
++ ++||.|++ +++++..+++.+.++|||||++++..|+..
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence 54 78999987 567888999999999999999999888764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.69 E-value=5.3e-17 Score=141.34 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEECCcccHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEeccCCCccccC
Q 018346 119 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEAS 196 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~ 196 (357)
..++.++++.+|.+|||+|||+|.++..+++. .|+.+|+++|.++++++.|++|++..+ ..++++..+|+.+...+++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 45778889999999999999999999999987 477899999999999999999998864 4699999999988654578
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||.|+++ ++++..+++.+.++|||||++++..|+.
T Consensus 155 fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 155 YDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp EEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred eeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence 9999974 4567788999999999999999987764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=1.2e-16 Score=135.28 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=92.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c-ccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~Ii~~~~ 205 (357)
++..|||||||+|..+..+|+.+|+..++|+|+++.++..|.+++...+++||.++.+|+..+. + ++++|.|++..+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 3458999999999999999999999999999999999999999999999999999999987753 2 378999999888
Q ss_pred ccchhhH--------HHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHMKNY--------QNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~~~~--------~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+.... ..+++.+.++|||||.|++.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7665332 579999999999999999865
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=3.8e-16 Score=137.29 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=98.9
Q ss_pred HHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccccCcc
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD 198 (357)
.+++..+..+..+|||||||+|.++..+++++|+.+++++|+ |++++.+++++...+. +++.++.+|+.+. .+.+||
T Consensus 72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~D 149 (256)
T d1qzza2 72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTAD 149 (256)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEE
T ss_pred HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccch
Confidence 455666677788999999999999999999999999999998 8899999999988887 4899999998863 345799
Q ss_pred EEEEcccccchhh--HHHHHHHHHHhcccCceEEEEecc
Q 018346 199 RIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 199 ~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+|++..++|++++ ...+++++++.|||||++++..+.
T Consensus 150 ~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 150 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 9999999999954 467899999999999999987653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=1.8e-16 Score=136.77 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=95.2
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRI 200 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~I 200 (357)
+.+++.++.+|||+|||+|..+..+++..|+..|+|+|+|+.+++.+++++... +++.++..|....... ..+|++
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeE
Confidence 456788999999999999999999999988899999999999999999887654 3788889888775322 567888
Q ss_pred EEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++...+++.++...++.++.+.|||||.+++.+..
T Consensus 146 ~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence 88788888888999999999999999999887643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=4e-16 Score=132.70 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=90.0
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDR 199 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~ 199 (357)
.++++|+.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.|+++++..+ ++.++..|....... ..+|+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence 467889999999999999999999998888899999999999999999987764 899999998875432 23444
Q ss_pred EEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 200 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 200 Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|++ .+.+..+...++.++.++|||||.+++....
T Consensus 129 v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 129 IYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 443 3555667888999999999999999987643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=3.1e-16 Score=138.06 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcccc
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 195 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 195 (357)
...++.++++.++.+|||+|||+|.++..+|+.. |+++|+++|+|+++++.|+++++..++ +++.+...|+.......
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 171 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence 4467888999999999999999999999999875 788999999999999999999999987 48898888876533236
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.||.|+. +++++..+++++.++|||||++++..|+.
T Consensus 172 ~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 172 DVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp SEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 6888765 56788899999999999999999987754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.64 E-value=1.7e-15 Score=128.10 Aligned_cols=105 Identities=19% Similarity=0.292 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cc-cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~fD~Ii~~~~ 205 (357)
....|||||||+|..+..+|+.+|+..++|+|+++.++..|.+++...+++|+.++.+|+..+. ++ .++|.|+++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 3458999999999999999999999999999999999999999999999999999999988754 22 78999998877
Q ss_pred ccchhh--------HHHHHHHHHHhcccCceEEEEe
Q 018346 206 FEHMKN--------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 206 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
-.+... ...+++.+.++|||||.+++.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 655422 2679999999999999998865
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.3e-16 Score=142.58 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CC--CC
Q 018346 110 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL--QN 180 (357)
Q Consensus 110 l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~--~~ 180 (357)
..+.+...+..+++.+.+.++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.+.. |. .+
T Consensus 132 ~~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 132 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp CCCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hhhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 3344455777889999999999999999999999999999887779999999999999998876542 22 38
Q ss_pred eEEEEeccCCCccc-c--CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 181 VEIIVADISTFEME-A--SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 181 v~~~~~d~~~~~~~-~--~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++|+++|+.+.+.. . ..|+|+++. +.+.++....+.++.+.|||||+++...
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eEEEECcccccccccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 99999999987654 2 357777765 4466788899999999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=6.2e-16 Score=138.70 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=85.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC----CeEEEEeccCCC----ccccCccE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ----NVEIIVADISTF----EMEASYDR 199 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~----~v~~~~~d~~~~----~~~~~fD~ 199 (357)
.++.+|||+|||+|.++..|++. +.+|+|+|+|+.|++.|+++....+.. +..+...|+... +..++||+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 45779999999999999999987 789999999999999999988776542 344555555432 23368999
Q ss_pred EEEcc-cccchh-------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIE-MFEHMK-------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~-~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|+|.. +++|++ +...+++++.++|||||++++...+.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 99754 777763 46789999999999999999977643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-15 Score=135.82 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHH----CCC--cEEEEEcCCHHHHHHHHHHHHHcC-CCCeEE--E
Q 018346 115 KAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK----YSN--CKITGICNSKTQKEFIEEQCRVLE-LQNVEI--I 184 (357)
Q Consensus 115 ~~~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~----~p~--~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~--~ 184 (357)
...+..++..+. .++..+|||||||+|.++..+++. +|+ ..++|+|+|+.+++.+++++.... +.++.+ .
T Consensus 25 ~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 104 (280)
T d1jqea_ 25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWH 104 (280)
T ss_dssp HHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEE
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccch
Confidence 334444444443 234558999999999998887654 343 478999999999999999876542 234544 3
Q ss_pred EeccCCC------cc-ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCCC
Q 018346 185 VADISTF------EM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 238 (357)
Q Consensus 185 ~~d~~~~------~~-~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 238 (357)
..++.+. +. .++||+|++..+++|++++..+++++.++|+|||.+++..+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 105 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp CSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred hhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 3333221 11 278999999999999999999999999999999999998876543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.7e-16 Score=134.49 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--ccc-cCccEEEE--
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--EME-ASYDRIYS-- 202 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~~~-~~fD~Ii~-- 202 (357)
.++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++....+. ++.++..|+... ..+ ++||.|+.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeecc
Confidence 467899999999999999999764 46899999999999999999877655 788888876543 222 67888874
Q ss_pred ---cccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 203 ---IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 203 ---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...++|+.+...+++++.++|||||++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 456677788999999999999999998763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.7e-15 Score=127.98 Aligned_cols=111 Identities=23% Similarity=0.190 Sum_probs=92.1
Q ss_pred HHHHHHHc--CCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCC-----CCeEEEEeccC
Q 018346 118 LELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADIS 189 (357)
Q Consensus 118 l~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~ 189 (357)
...+++.+ .+.++.+|||||||+|..+..+++.. |..+|+++|+++++++.|+++++..++ +++.+..+|..
T Consensus 63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 34566655 56789999999999999999998763 677999999999999999999987653 47899999988
Q ss_pred CCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 190 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 190 ~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...++ .+||+|++..+++++++ .+.+.|||||++++...
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred cccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence 75544 78999999999988753 46789999999998654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.2e-15 Score=137.58 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=95.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcC-----------CCCeEEEE
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLE-----------LQNVEIIV 185 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~-----------~~~v~~~~ 185 (357)
...++..+++.+|.+|||+|||+|.++..||+.. |+.+|+++|+++++++.|++|++..+ .+++++..
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 4457778899999999999999999999999874 78899999999999999999987642 24899999
Q ss_pred eccCCCccc---cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 186 ADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 186 ~d~~~~~~~---~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+|+.+.... ..||.|+. .++++..++.++.++|||||++++..|+..
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~ 216 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNIT 216 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 998875322 67999987 345667789999999999999999887653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.5e-15 Score=132.58 Aligned_cols=144 Identities=10% Similarity=0.007 Sum_probs=103.9
Q ss_pred hhhcCCChHHHHHhhcCCCCccccccCCCCCCHHHHHHHHHHHHHHHcC--CCCCCEEEEECCcccHHHHHHHHHCCCcE
Q 018346 78 EQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCK 155 (357)
Q Consensus 78 ~~~y~~~~~~~~~~l~~~~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~ 155 (357)
++||++..++-+..|.|+ ++++.. -...+..++.... ..+..+|||+|||+|+++..++.+.|+++
T Consensus 20 ~~f~gl~~~v~~~~LiPr---------~~~r~~---~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~ 87 (250)
T d2h00a1 20 REDFGLSIDIPLERLIPT---------VPLRLN---YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWY 87 (250)
T ss_dssp HHHHCCCCCCCTTSCCCC---------HHHHHH---HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCE
T ss_pred HHHcCceEEeCCCeecCC---------CCCHHH---HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCcc
Confidence 688998888888888886 222111 1122333332221 12456999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc-------ccCccEEEEcccccchh-----------------
Q 018346 156 ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-------EASYDRIYSIEMFEHMK----------------- 210 (357)
Q Consensus 156 v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~-------~~~fD~Ii~~~~~~~~~----------------- 210 (357)
++|+|+|+++++.|++|++.+++. ++.++..+...... .++||+|+||+|+....
T Consensus 88 ~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~ 167 (250)
T d2h00a1 88 FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPS 167 (250)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--------------------
T ss_pred ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCch
Confidence 999999999999999999999885 78888876544211 25799999999986321
Q ss_pred ------------------hHHHHHHHHHHhcccCceEEEEe
Q 018346 211 ------------------NYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 211 ------------------~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.+.+++++....++..|++....
T Consensus 168 ~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i 208 (250)
T d2h00a1 168 SVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML 208 (250)
T ss_dssp -----CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred hhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence 24556677777788888876543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.58 E-value=5.1e-15 Score=126.63 Aligned_cols=106 Identities=19% Similarity=0.241 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cC
Q 018346 118 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 118 l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 196 (357)
...+++.+.+.++.+|||||||+|..+..+++. ..+|+++|+++..++.|+++.... .|+.++.+|.....++ ++
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhh
Confidence 345677788999999999999999999999987 679999999999999999886643 4999999998764333 78
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
||+|++....+++++ .+.+.|||||++++..
T Consensus 135 fD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 135 YDRVVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred HHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence 999999998887752 3567899999998854
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.9e-16 Score=135.52 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=81.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC---------------------------
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--------------------------- 180 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~--------------------------- 180 (357)
.++.+|||||||+|..+..++... ..+|+|+|+|+.+++.|+++++..+...
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 467899999999999988777653 3479999999999999999887654310
Q ss_pred --e-EEEEeccCC----Cccc-cCccEEEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 181 --V-EIIVADIST----FEME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 181 --v-~~~~~d~~~----~~~~-~~fD~Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ .....+... .+.+ ++||+|++..+++|+ +++..+++++.++|||||.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 0 112222211 1222 789999999999998 467889999999999999999977643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.56 E-value=1.7e-14 Score=122.57 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
+...+++.+.+.++.+|||||||+|..+..+++.. +.+|+++|.++..++.|++++...+.+|+.++++|.....+. .
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 44567777889999999999999999999999765 568999999999999999999999999999999998874333 7
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+||.|++......++. .+.+.|+|||++++..-.
T Consensus 145 pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGS 178 (215)
T ss_dssp CEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECS
T ss_pred cceeEEeecccccCCH------HHHHhcCCCCEEEEEEcc
Confidence 8999999999987763 256789999999885543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=4.2e-14 Score=130.69 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=104.0
Q ss_pred cCCChHHHHHhhcCCC----Ccc---ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCC
Q 018346 81 YELPTSFFKLVLGKYF----KYS---CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 153 (357)
Q Consensus 81 y~~~~~~~~~~l~~~~----~y~---~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~ 153 (357)
+.....+|.....|.. +|. +..|. +.+ -..+..+++.+++.++.+|||||||+|..+..+|..++.
T Consensus 168 ~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYG---El~----~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~ 240 (406)
T d1u2za_ 168 HDFLHIVYTRSIHPQANKLKHYKAFSNYVYG---ELL----PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC 240 (406)
T ss_dssp HHHHHHHHHHHTGGGGGGGCSCCSSGGGCCC---CBC----HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred HHHHHHhhcccccCChHHhcccCCCCCCccc---cCC----HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCC
Confidence 5555677777765421 232 12222 222 235677888899999999999999999999999998876
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHcC-------C--CCeEE-EEeccCCCcc-c---cCccEEEEcccccchhhHHHHHHHH
Q 018346 154 CKITGICNSKTQKEFIEEQCRVLE-------L--QNVEI-IVADISTFEM-E---ASYDRIYSIEMFEHMKNYQNLLKKI 219 (357)
Q Consensus 154 ~~v~~vD~s~~~l~~a~~~~~~~~-------~--~~v~~-~~~d~~~~~~-~---~~fD~Ii~~~~~~~~~~~~~~l~~~ 219 (357)
.+|+|+|+|+.+++.|++++...+ . ..+.+ ..++....+. . ..+|+|+++. +.+.++....+.++
T Consensus 241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei 319 (406)
T d1u2za_ 241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKI 319 (406)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHH
Confidence 799999999999999999887532 1 13333 3344443221 1 4678888765 44668899999999
Q ss_pred HHhcccCceEEEEe
Q 018346 220 SKWMKEDTLLFVHH 233 (357)
Q Consensus 220 ~~~LkpgG~l~~~~ 233 (357)
.+.|||||++++..
T Consensus 320 ~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 320 LQTAKVGCKIISLK 333 (406)
T ss_dssp HTTCCTTCEEEESS
T ss_pred HHhcCCCcEEEEec
Confidence 99999999988753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=9e-15 Score=132.18 Aligned_cols=106 Identities=22% Similarity=0.213 Sum_probs=90.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----cc-cCccEEEEc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 203 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~fD~Ii~~ 203 (357)
++.+|||+|||+|.+++.++.. +.+|+++|+|+.+++.|++|++.+|+++++++++|..+.. .. ++||+|+++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 6889999999999999998865 6799999999999999999999999989999999987642 12 689999999
Q ss_pred ccccc---------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 204 EMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 204 ~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
++... ..++..++..+.++|+|||.+++.+.++
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 87532 2456788999999999999998876654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=4e-14 Score=121.39 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---c-cCc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---E-ASY 197 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---~-~~f 197 (357)
+.+++.+|.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.++++++..+ ++..+..|...... . ..+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccce
Confidence 45678899999999999999999999875 77899999999999999998876543 78888888765321 1 568
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
|+|++. +.+.++...+++++.+.|||||.+++.+..
T Consensus 145 D~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka 180 (227)
T d1g8aa_ 145 DVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp EEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence 888775 445567788999999999999999987653
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=4.7e-14 Score=128.30 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=86.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccc-cCccEEEEccc
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEM 205 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~Ii~~~~ 205 (357)
.++++|||||||+|.+++.+++.. ..+|+++|.|+ ++..|+++...++.. +++++.+|+.+++.+ ++||+|++..+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence 368999999999999999988873 35999999996 668888888888874 899999999998765 78999999877
Q ss_pred ccch---hhHHHHHHHHHHhcccCceEE
Q 018346 206 FEHM---KNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 206 ~~~~---~~~~~~l~~~~~~LkpgG~l~ 230 (357)
.+++ .....++....++|||||.++
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 6555 557888999999999999875
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=5.1e-14 Score=113.51 Aligned_cols=107 Identities=9% Similarity=0.182 Sum_probs=87.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc-c-ccCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-M-EASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~-~-~~~fD~Ii~~~~ 205 (357)
++.+|||+|||+|.+++.++.+. ..+|+++|.++.+++.+++++...++. +++++++|+.... . .++||+|++++|
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhC-cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 68899999999999999988774 359999999999999999999998884 7999999987742 2 278999999999
Q ss_pred ccchhhHHHHHHHHH--HhcccCceEEEEeccCC
Q 018346 206 FEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~ 237 (357)
+.. ......+..+. +.|+|||.++++.....
T Consensus 93 y~~-~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~ 125 (152)
T d2esra1 93 YAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV 125 (152)
T ss_dssp SHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hcc-chHHHHHHHHHHCCCcCCCeEEEEEeCCCC
Confidence 753 34455666654 46999999999866443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=3.1e-14 Score=124.75 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=89.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccc
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 205 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~ 205 (357)
..++.+|||+|||+|.+++.+++.. .++|+++|+|+.+++.+++|++.++++ +|+++++|+.++...+.||.|+++++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 3588999999999999999999874 579999999999999999999999985 69999999998876678999999876
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
... ..+++.+.+.|+|||++.+..+..
T Consensus 184 ~~~----~~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 184 VRT----HEFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp SSG----GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred Cch----HHHHHHHHhhcCCCCEEEEEeccc
Confidence 432 356777888999999997765543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.6e-13 Score=123.85 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=84.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEc
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSI 203 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~ 203 (357)
...++++|||||||+|.+++.+|+.. ..+|+++|.|+.+.. +++....++. +++.++.+|+.++..+ ++||+|++.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse 109 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE 109 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEe
Confidence 44578999999999999999999874 359999999998764 5555555555 5899999999998665 789999998
Q ss_pred ccccch---hhHHHHHHHHHHhcccCceEEE
Q 018346 204 EMFEHM---KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 204 ~~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
.+.+++ .....++....++|||||.++-
T Consensus 110 ~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 110 WMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 776655 3456777778899999999874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=9.9e-14 Score=125.44 Aligned_cols=101 Identities=28% Similarity=0.387 Sum_probs=85.6
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
++++|||||||+|.+++.+++.. ..+|+|+|.|+. ...+++++..++. ++|+++++|+.+++.+ ++||+|++..+.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 68899999999999999999874 358999999975 5677778888777 4799999999998766 789999998776
Q ss_pred cch---hhHHHHHHHHHHhcccCceEEE
Q 018346 207 EHM---KNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 207 ~~~---~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
+++ ...+.++..+.++|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 655 4578899999999999999864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=6.1e-14 Score=127.06 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=92.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc----cc-cCccEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE----ME-ASYDRI 200 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~----~~-~~fD~I 200 (357)
+.++.+|||+|||+|.+++.++... ..+|+++|+|+.+++.|++|+..+|+. +++++++|+.+.. .. .+||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 3578999999999999999999774 358999999999999999999999984 8999999987632 12 679999
Q ss_pred EEcccccc---------hhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
+++++... ..++.+++..+.++|+|||++++.+.++.
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99987532 23577889999999999999998876553
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=1.8e-13 Score=112.39 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC----cc-ccCccEEE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EM-EASYDRIY 201 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~fD~Ii 201 (357)
+..+.+|||+|||+|.+++.++.+ +++++++|.|+.+++.+++|++..++. .++...|.... .. ..+||+|+
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~If 115 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALPVEVFLPEAKAQGERFTVAF 115 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccc-cceeeeehhcccccccccCCccceeE
Confidence 346789999999999999998877 789999999999999999999999884 34444443321 11 26799999
Q ss_pred EcccccchhhHHHHHHHH--HHhcccCceEEEEeccC
Q 018346 202 SIEMFEHMKNYQNLLKKI--SKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~~~~ 236 (357)
+++|+.. +....+..+ ..+|+|||.++++....
T Consensus 116 ~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 116 MAPPYAM--DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred Ecccccc--CHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 9999763 222333333 24799999999876543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.45 E-value=2.6e-13 Score=115.97 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=89.0
Q ss_pred HHHHHHHc--CCCCCCEEEEECCcccHHHHHHHHHC------CCcEEEEEcCCHHHHHHHHHHHHHc-----CCCCeEEE
Q 018346 118 LELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKY------SNCKITGICNSKTQKEFIEEQCRVL-----ELQNVEII 184 (357)
Q Consensus 118 l~~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~------p~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~v~~~ 184 (357)
...+++.+ .+.++.+|||||||+|..+..+++.. ++.+|+++|++++.++.|+++.... +..|+.+.
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 34566655 67899999999999999998888753 2458999999999999999886543 34589999
Q ss_pred EeccCCCccc-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 185 VADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 185 ~~d~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+|..+...+ .+||+|++......+++ .+.+.|||||++++...
T Consensus 147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 147 EGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence 9998875433 78999999999987763 36789999999988544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.5e-13 Score=114.64 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++.+++.+...++..+||++||+|..+..+++.+|+++|+|+|.++.+++.|+++....+. ++.++++++.++..
T Consensus 11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLK 89 (192)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999887664 89999999876421
Q ss_pred --c-cCccEEEEcccc---------cchhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 --E-ASYDRIYSIEMF---------EHMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. ++||.|+....+ ..+......+..+.++|+|||.+++.++..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 1 689999887544 234567888999999999999999877654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.42 E-value=6.6e-13 Score=118.08 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc-----ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~fD~I 200 (357)
.++.+|||++||+|.+++.++.. +++|++||.|+.+++.|++|+..++++ +++|+++|+.+... ..+||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 46789999999999999999876 789999999999999999999999874 69999999987421 2679999
Q ss_pred EEcccccc---------h-hhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 201 YSIEMFEH---------M-KNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 201 i~~~~~~~---------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|++++--. + .+...++..+.++|+|||.+++.+.+..
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 99987321 1 3456677888999999998777665443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7.7e-13 Score=109.75 Aligned_cols=106 Identities=15% Similarity=0.262 Sum_probs=88.8
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc--ccCccEEEEcccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~ 206 (357)
.+.+|||++||+|.+++.++.+. ..+|+.||.|+.+++.+++|+...+..++.++.+|+.+... ..+||+|+++||+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 57899999999999999988884 34899999999999999999998888889999999876432 2679999999998
Q ss_pred cchhhHHHHHHHHHH--hcccCceEEEEeccC
Q 018346 207 EHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 236 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 236 (357)
.. .....++..+.+ +|+|+|.++++....
T Consensus 122 ~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~~~ 152 (183)
T d2fpoa1 122 RR-GLLEETINLLEDNGWLADEALIYVESEVE 152 (183)
T ss_dssp ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred cc-chHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence 64 345667777765 599999999986544
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.5e-13 Score=116.42 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC----------
Q 018346 110 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ---------- 179 (357)
Q Consensus 110 l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~---------- 179 (357)
+.......+..++.. +...+.+|||+|||+|..+...+... ..+|+|+|+|+.+++.+++++...+..
T Consensus 36 ~~~~~~~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~ 113 (263)
T d2g72a1 36 VGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHA 113 (263)
T ss_dssp HHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHH
T ss_pred hhhhHHHHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhh
Confidence 333333334443332 33467899999999998876555443 458999999999999999876543210
Q ss_pred --------------------CeEEEEeccCCCc------c-ccCccEEEEcccccchh----hHHHHHHHHHHhcccCce
Q 018346 180 --------------------NVEIIVADISTFE------M-EASYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 180 --------------------~v~~~~~d~~~~~------~-~~~fD~Ii~~~~~~~~~----~~~~~l~~~~~~LkpgG~ 228 (357)
......+|+.... . +++||+|++..+++++. ++..+++++.++|||||.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~ 193 (263)
T d2g72a1 114 CLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH 193 (263)
T ss_dssp HHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence 1134455665421 1 15799999999999983 678899999999999999
Q ss_pred EEEEecc
Q 018346 229 LFVHHFC 235 (357)
Q Consensus 229 l~~~~~~ 235 (357)
+++..+.
T Consensus 194 li~~~~~ 200 (263)
T d2g72a1 194 LLLIGAL 200 (263)
T ss_dssp EEEEEEE
T ss_pred EEEeccc
Confidence 9997664
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.39 E-value=4.1e-13 Score=120.77 Aligned_cols=109 Identities=18% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc----c-cCccE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM----E-ASYDR 199 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~----~-~~fD~ 199 (357)
..++.+|||++||+|.+++.++... ..+|+++|+|+.+++.+++|+..++++ +++++++|+.+... . .+||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3478999999999999999888652 348999999999999999999999873 79999999976421 2 57999
Q ss_pred EEEccccc---------chhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++.+|-- ...++.++++.+.++|+|||.+++.+.++
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 99998742 22567889999999999999999876544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=1.9e-12 Score=108.89 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEE
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 202 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~ 202 (357)
...+.-.|.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.+++|+...+. +++++.+|...++ ++||+|++
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~--~~fD~Vi~ 115 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIM 115 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEE
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC--CcCcEEEE
Confidence 33444468899999999999999888763 35999999999999999999988887 7899999987754 68999999
Q ss_pred cccccch
Q 018346 203 IEMFEHM 209 (357)
Q Consensus 203 ~~~~~~~ 209 (357)
++++...
T Consensus 116 nPP~~~~ 122 (201)
T d1wy7a1 116 NPPFGSQ 122 (201)
T ss_dssp CCCCSSS
T ss_pred cCccccc
Confidence 9998654
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.33 E-value=4.3e-12 Score=104.96 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=89.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc----c-cCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----E-ASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~----~-~~fD~Ii 201 (357)
.++.+|||++||+|.+++..+.+. ..+|+++|.|+.+++.+++|+...+.. +++++++|+.+... . .+||+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 468999999999999999999884 348999999999999999999988874 89999999876321 1 5799999
Q ss_pred EcccccchhhHHHHHHHHHH--hcccCceEEEEeccCC
Q 018346 202 SIEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCHK 237 (357)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~ 237 (357)
+.||+.. ......+..+.+ +|+|+|.++++.....
T Consensus 119 lDPPY~~-~~~~~~l~~i~~~~~L~~~giIi~E~~~~~ 155 (182)
T d2fhpa1 119 LDPPYAK-QEIVSQLEKMLERQLLTNEAVIVCETDKTV 155 (182)
T ss_dssp ECCCGGG-CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred echhhhh-hHHHHHHHHHHHCCCCCCCEEEEEEcCCCC
Confidence 9999853 456677777754 6999999999876443
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.32 E-value=1.1e-11 Score=107.33 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=89.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
....+++... .....+|||||||+|..+..+++++|+.+++..|+ |..++.+ ...++++++.+|+.+.. +
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~~-p- 138 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFASV-P- 138 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTCC-C-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCccccc-c-
Confidence 4455666666 46678999999999999999999999999999998 5443211 12359999999998643 2
Q ss_pred CccEEEEcccccchhh--HHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..|+|++..++|++++ ...+++++++.|+|||++++.....
T Consensus 139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 4599999999999944 6689999999999999999987643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=2.7e-12 Score=107.03 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.|++|||+|||+|.+++.++... ..+|+|+|+++.+++.|++|+ .++.++++|+.+++ ++||+|++|+++..
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l~--~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEIS--GKYDTWIMNPPFGS 119 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGCC--CCEEEEEECCCC--
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc-----ccccEEEEehhhcC--CcceEEEeCcccch
Confidence 58999999999999998888763 358999999999999999875 37899999998764 78999999999853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.28 E-value=5e-12 Score=105.70 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCCCEEEEECCcccHHHHH----HHHHC----CCcEEEEEcCCHHHHHHHHHHH--------------HH----cC----
Q 018346 128 EDGHTVLDVGCGWGSLSLY----IAQKY----SNCKITGICNSKTQKEFIEEQC--------------RV----LE---- 177 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~----la~~~----p~~~v~~vD~s~~~l~~a~~~~--------------~~----~~---- 177 (357)
.+..+||++|||+|.-+.. +.+.. ...+++|+|+|+.+++.|++.. .. .+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3567999999999985433 44331 1358999999999999997522 00 00
Q ss_pred ---------CCCeEEEEeccCCCcc--ccCccEEEEcccccchh--hHHHHHHHHHHhcccCceEEEE
Q 018346 178 ---------LQNVEIIVADISTFEM--EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 178 ---------~~~v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
...+.+...+...... .++||+|+|.+++.+++ ...++++++++.|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0135667777665322 27899999999999994 3478999999999999998884
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=2.1e-11 Score=103.32 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEecc
Q 018346 111 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADI 188 (357)
Q Consensus 111 ~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~ 188 (357)
...+..++..++... ++.+|||+|||+|..++.+++..+ +.+|+++|+++.+++.|++++...|+. +|+++.+|.
T Consensus 41 ~~~~G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~ 117 (214)
T d2cl5a1 41 GDAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS 117 (214)
T ss_dssp HHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence 344455666666655 467999999999999999998764 689999999999999999999999984 799999998
Q ss_pred CCCcc------c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 189 STFEM------E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 189 ~~~~~------~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.+... . ++||+|+....-.... ....+.+..++|+|||++++...
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~~-~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCGGGHH-HHHHHHHHTTCEEEEEEEEESCC
T ss_pred cccccchhhcccccccceeeecccccccc-cHHHHHHHhCccCCCcEEEEeCc
Confidence 76421 1 5699999875432221 22346667788999999877443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.3e-11 Score=102.26 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCC
Q 018346 114 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTF 191 (357)
Q Consensus 114 ~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~ 191 (357)
+..++..+++.. ++++|||||||+|..+.++++..| +.+|+.+|++++..+.|++++...|+. +++++.+|+.+.
T Consensus 47 ~g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 47 QAQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 345666665544 568999999999999999998875 689999999999999999999999985 799999997653
Q ss_pred cc-------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~-------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. .++||+|+...-- ..+...++.+.+.|+|||.+++...
T Consensus 124 l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred chhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 21 2579999997543 4567788889999999999988544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.8e-10 Score=96.48 Aligned_cols=101 Identities=17% Similarity=0.286 Sum_probs=90.4
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
++.+|+|+|||.|..++.+|-.+|+.+++.+|.+..-+...+......+++|+++++..+++.....+||+|+|..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh---
Confidence 45799999999999999999999999999999999999999999999999899999999998755568999999865
Q ss_pred hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.....+++-+.+.+++||.+++.-
T Consensus 142 -~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 -ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 356788999999999999988854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.19 E-value=7.8e-11 Score=106.61 Aligned_cols=112 Identities=11% Similarity=0.057 Sum_probs=89.5
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCcc
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 198 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 198 (357)
.....++.+|||.|||+|.++..+.... +..+++|+|+++.++..|+.++...+. +..+..+|........+||
T Consensus 112 ~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD 190 (328)
T d2f8la1 112 VIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVD 190 (328)
T ss_dssp HHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEE
T ss_pred HhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccc
Confidence 3455677899999999999999887542 345899999999999999999888776 6777888876654447899
Q ss_pred EEEEcccccchh------------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 199 RIYSIEMFEHMK------------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 199 ~Ii~~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+|++|+|+.... ....++..+.+.|+|||++++..|..
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 999999984321 13347999999999999999988765
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.2e-10 Score=106.75 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=100.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHH
Q 018346 96 FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 175 (357)
Q Consensus 96 ~~y~~~~f~~~~~~l~~~~~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~ 175 (357)
+.++++.|...+ . .....+++.+.+.+...++.+|||+.||+|.++..|++. ..+|+|+|+++.+++.|++|++.
T Consensus 182 ~~i~p~sFfQ~N--~-~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~ 256 (358)
T d1uwva2 182 LTFSPRDFIQVN--A-GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARL 256 (358)
T ss_dssp EECCSSSCCCSB--H-HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH
T ss_pred EEECCchhhccc--h-hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHh
Confidence 344555555332 2 233557777888888888899999999999999999987 67999999999999999999999
Q ss_pred cCCCCeEEEEeccCCCcc-----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 176 LELQNVEIIVADISTFEM-----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 176 ~~~~~v~~~~~d~~~~~~-----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
++++|+.|+.+|..+... ..++|+|+.+++-.+.. +.++.+.+ ++|.-++++++
T Consensus 257 n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~---~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 257 NGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA---GVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp TTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH---HHHHHHHH-HCCSEEEEEES
T ss_pred cccccceeeecchhhhhhhhhhhhccCceEEeCCCCccHH---HHHHHHHH-cCCCEEEEEeC
Confidence 999999999999876421 15699999999988863 35666655 36777777754
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.17 E-value=1.3e-10 Score=98.94 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCc
Q 018346 115 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 192 (357)
Q Consensus 115 ~~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~ 192 (357)
..++..++... ++.+||||||++|..+.++++..| +++++.+|.+++..+.|++++...|.. +|+++.+|+.+..
T Consensus 48 g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L 124 (227)
T d1susa1 48 GQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL 124 (227)
T ss_dssp HHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH
Confidence 44565565554 568999999999999999999886 689999999999999999999999985 7999999987632
Q ss_pred c--------ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 M--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ~--------~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
. .++||+|+...-- ..+...++.+.++|+|||.+++.
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEc
Confidence 1 2479999997533 45778899999999999999885
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=2.1e-10 Score=94.72 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCC---cc-ccCccEEEE
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF---EM-EASYDRIYS 202 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~---~~-~~~fD~Ii~ 202 (357)
.+.+|||+.||||.+++..+.+. ..+|+.||.++.++...++|++..+.. ...+...|..+. .. ..+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 57899999999999999999884 459999999999999999999988763 466677765442 11 256999999
Q ss_pred cccccchhhHHHHHHHHHH--hcccCceEEEEeccCC
Q 018346 203 IEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCHK 237 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~~ 237 (357)
.||+.. ......+..+.. +|+++|.++++.....
T Consensus 122 DPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~~ 157 (183)
T d2ifta1 122 DPPFHF-NLAEQAISLLCENNWLKPNALIYVETEKDK 157 (183)
T ss_dssp CCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred chhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCCC
Confidence 999865 456677777765 6999999999876543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.13 E-value=1.5e-10 Score=100.06 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
...+|||||||+|..+..+++++|+.++++.|+ |..++.+. ..++|+++.+|+.+.. ..+|++++..++|+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~--p~aD~~~l~~vLHd 150 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI--PNADAVLLKYILHN 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC--CCCSEEEEESCGGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC--CCCcEEEEEeeccc
Confidence 457899999999999999999999999999998 54443221 1249999999998743 35899999999999
Q ss_pred hhh--HHHHHHHHHHhcccC---ceEEEEecc
Q 018346 209 MKN--YQNLLKKISKWMKED---TLLFVHHFC 235 (357)
Q Consensus 209 ~~~--~~~~l~~~~~~Lkpg---G~l~~~~~~ 235 (357)
+++ ..++++++++.|+|| |++++....
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 954 468999999999999 667776543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.10 E-value=1.5e-10 Score=100.09 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=85.3
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
....+++.... .+..+|||||||+|..+..+++++|+.+++++|+.+. ++.+. ..++++++.+|+.+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~------~~~r~~~~~~d~~~~~-P- 138 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAP------SYPGVEHVGGDMFVSI-P- 138 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCC------CCTTEEEEECCTTTCC-C-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcc------cCCceEEecccccccC-C-
Confidence 34455555554 3457899999999999999999999999999999543 32211 1248999999997632 2
Q ss_pred CccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 196 SYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
..|+++...++|.+ ++...+++++++.|+|||++++....
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 36888889999888 45778999999999999999987654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.99 E-value=9.4e-10 Score=94.16 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
..++.+++.+.+.++.+|||||||+|.++..|++. +.+|+++|+++.+++.++++.... ++++++.+|+.+++.+
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccc
Confidence 45677888888889999999999999999999988 679999999999999988876443 4899999999987654
Q ss_pred cCccEEEEccccc
Q 018346 195 ASYDRIYSIEMFE 207 (357)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (357)
.....|++|.+++
T Consensus 84 ~~~~~vv~NLPYn 96 (235)
T d1qama_ 84 NQSYKIFGNIPYN 96 (235)
T ss_dssp SCCCEEEEECCGG
T ss_pred cccceeeeeehhh
Confidence 3445788998885
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.97 E-value=7.8e-10 Score=93.87 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
+.+.+++.+...++.+|||.|||+|.++..+.+..+ ...++|+|+++.++..+ .+..++++|........
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhcccccc
Confidence 455677778888899999999999999988877654 46899999998754322 25677888887655457
Q ss_pred CccEEEEcccccchh-----------------------------hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHMK-----------------------------NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+||+|++++++.... -...++..+.+.|+|||.+.+..+..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 899999999874320 13466788999999999999988754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.92 E-value=2e-09 Score=91.72 Aligned_cols=101 Identities=23% Similarity=0.279 Sum_probs=88.0
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccEEEEcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIYSIE 204 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~Ii~~~ 204 (357)
++.+|+|||+|.|.-++.++-.+|+.+++.+|.+..-+...+......+++++.++...+++... .++||+|+|..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 56799999999999999999889999999999999999999998899999999999988775432 26799999985
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+ .....+++-+.+++++||.+++.-
T Consensus 150 v----a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 150 V----ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp C----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred h----hCHHHHHHHHhhhcccCCEEEEEC
Confidence 5 467889999999999999988843
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=9.4e-10 Score=98.11 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=85.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc--C---CCCeEEEEeccCCCcc--ccCccEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--E---LQNVEIIVADISTFEM--EASYDRI 200 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~--~---~~~v~~~~~d~~~~~~--~~~fD~I 200 (357)
+.+++||.||+|.|..+..+++..|..+|++||++++.++.+++.+... + -++++++.+|..+... .++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4678999999999999999987766789999999999999999987542 1 2489999999987532 2679999
Q ss_pred EEccc--cc-c-h---hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 201 YSIEM--FE-H-M---KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 201 i~~~~--~~-~-~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
++... .. . . -...++++.+.+.|+|||++++...+
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 97652 11 1 1 11367999999999999999886543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.87 E-value=2.4e-08 Score=93.05 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC-------------CcEEEEEcCCHHHHHHHHHHHHHcCCC--Ce
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-------------NCKITGICNSKTQKEFIEEQCRVLELQ--NV 181 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v 181 (357)
+.+.+++.+...++.+|+|.+||+|.+...+.+... ...++|+|+++.+...|+.++.-.+.. +.
T Consensus 150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 445566667777789999999999999988876431 125899999999999999998877763 45
Q ss_pred EEEEeccCCCccccCccEEEEcccccch-----------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 182 EIIVADISTFEMEASYDRIYSIEMFEHM-----------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 182 ~~~~~d~~~~~~~~~fD~Ii~~~~~~~~-----------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
.....|........+||+|++|+|+... .....++..+.+.|+|||++.+..|..
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 6778887765444789999999999432 113458999999999999999988754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=3.3e-09 Score=93.48 Aligned_cols=109 Identities=15% Similarity=0.033 Sum_probs=85.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
+.+.+||-||.|.|..+..+++..|..+|+++|+++.+++.+++...... -++++++.+|..+... +++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45689999999999999999977667899999999999999998765431 2489999999887532 26799999
Q ss_pred Ecccccch-h----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM-K----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~-~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+...-... + ...++++.+.+.|+|||++++...++
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 87533211 1 23689999999999999999876554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=3.3e-09 Score=93.02 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=83.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc----------CCCCeEEEEeccCCCccc-cC
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------ELQNVEIIVADISTFEME-AS 196 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~v~~~~~d~~~~~~~-~~ 196 (357)
.++.+||.||+|.|..+..+.+. |..+|+++|+++..++.|++..... ..++++++.+|....... ++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 46789999999999999988864 5679999999999999998765321 124899999998764322 78
Q ss_pred ccEEEEcccccchh----hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 197 YDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 197 fD~Ii~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
||+|++...-..-. ...++++.+.+.|+|||++++...++
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 99999865432111 12678999999999999998876544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.82 E-value=2.2e-10 Score=98.66 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-c
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 195 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 195 (357)
.++.+++.+.+.++.+|||||||+|.++..|++. +.+|+++|+++.+++.++++.... ++++++++|+.+++.+ .
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~--~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLN--TRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTC--SEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhc--cchhhhhhhhhccccccc
Confidence 3456788888889999999999999999999998 679999999999888777655432 4899999999987665 5
Q ss_pred CccEEEEcccccch
Q 018346 196 SYDRIYSIEMFEHM 209 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~ 209 (357)
.++.|++|.+++--
T Consensus 93 ~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 93 QRYKIVGNIPYHLS 106 (245)
T ss_dssp SEEEEEEECCSSSC
T ss_pred eeeeEeeeeehhhh
Confidence 67789999998543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.8e-08 Score=88.64 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=90.0
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--cccCccEEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 201 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~Ii 201 (357)
.+...++.+|||+++|.|+-+..++....+..|+++|+++.-+...+++++..|.+++.....|..... .+..||.|+
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL 176 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL 176 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEE
Confidence 456778999999999999999999988777899999999999999999999999966665555544322 126799999
Q ss_pred Ecccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+-... .-..+++..+.+.|||||.++.++-+.
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 98755221 114678999999999999998877654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.9e-08 Score=87.55 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=92.1
Q ss_pred HcCCCCCCEEEEECCcccHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEE
Q 018346 124 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 201 (357)
Q Consensus 124 ~~~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii 201 (357)
.+...++.+|||++||.|+-+..++.... ...++++|+++.-+...++++...|..++.....|....+.. ..||.|+
T Consensus 111 ~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 111 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred cccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEE
Confidence 35677899999999999999999988763 568999999999999999999999998888888887665433 6799999
Q ss_pred Ecccccch----------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+..+-.+. ....+++..+.+.|||||.++.++-+.
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 97754221 124678899999999999988877654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=1.3e-08 Score=83.26 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 193 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 193 (357)
+++++++.+.+.++..++|..||.|+.+..+.+. +.+|+|+|.++.++..+++. ..+++.+++.+..++..
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHH
Confidence 4566777778889999999999999999999987 67999999999999888753 22489999998877431
Q ss_pred --c-cCccEEEEcccccc---------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 --E-ASYDRIYSIEMFEH---------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 --~-~~fD~Ii~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
. +++|.|+....+.. +......+....+.|+|||.+++.++..
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 1 57999998764422 2345668888999999999999887744
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=8.5e-09 Score=90.07 Aligned_cols=109 Identities=21% Similarity=0.088 Sum_probs=85.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-C---CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-E---LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-~---~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
.++.+||-||.|.|..+..+.+..+..+|+++|++++.++.|++..... + -++++++.+|...... +++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4568999999999999999997666679999999999999999987532 1 2489999999876432 27899999
Q ss_pred Ecccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+...-..- -.-.++++.+.+.|+|||+++....++
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 87532111 124688999999999999999876543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1e-08 Score=89.97 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=85.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEEeccCCCcc--ccCccE
Q 018346 126 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVADISTFEM--EASYDR 199 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~----~~~~v~~~~~d~~~~~~--~~~fD~ 199 (357)
....+++||-||.|.|..+..+.+..+..+|+++|++++.++.|++..... .-++++++.+|...... .++||+
T Consensus 75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 75 SHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred hCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 345678999999999999999997656779999999999999999876532 12489999999876432 268999
Q ss_pred EEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++...-..- -...++++.+.+.|+|||++++...++
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 9987532111 123568999999999999999976654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.72 E-value=7.7e-09 Score=91.44 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--ccCccEEE
Q 018346 128 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRIY 201 (357)
Q Consensus 128 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~Ii 201 (357)
..+.+||-||.|.|..+..+.+..|..+|+++|+++..++.+++...... -++++++.+|...... .++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 46789999999999999999976555799999999999999998764321 2489999999887532 26799999
Q ss_pred Ecccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 202 SIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 202 ~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+...-..- -...++++.+.+.|+|||+++....+.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 87542211 124678999999999999999976544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=5.1e-08 Score=84.90 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 194 (357)
..++.+++.+++.++..|||||+|.|.+|..|++. +.+|+++|+++..++..++....... ++++++.+|+.....+
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 35667888888888999999999999999999998 67999999999999999988766543 4899999999887543
Q ss_pred cCccEEEEccccc
Q 018346 195 ASYDRIYSIEMFE 207 (357)
Q Consensus 195 ~~fD~Ii~~~~~~ 207 (357)
.++.||+|.+++
T Consensus 86 -~~~~vV~NLPY~ 97 (278)
T d1zq9a1 86 -FFDTCVANLPYQ 97 (278)
T ss_dssp -CCSEEEEECCGG
T ss_pred -hhhhhhcchHHH
Confidence 467899999985
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.1e-07 Score=83.95 Aligned_cols=111 Identities=12% Similarity=-0.045 Sum_probs=85.9
Q ss_pred cCCCCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccE
Q 018346 125 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDR 199 (357)
Q Consensus 125 ~~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~ 199 (357)
+...++.+|||++||.|+-+..++... +...|+++|+|+.-++.++++++..|++++.+...|...+... ++||.
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeE
Confidence 456789999999999999999988764 4679999999999999999999999999999999998765321 57999
Q ss_pred EEEcccccch------------------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM------------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++..+-... .....++..+. .|+|||.++.++-+.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 9998763221 01233444444 479999887766543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.69 E-value=1.9e-08 Score=88.45 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=85.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCc--cc-cCccE
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFE--ME-ASYDR 199 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~-~~fD~ 199 (357)
.+++++||-||.|.|..+..+.+..|..+++++|++++.++.+++...... -++++++.+|..... .. ++||+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 356789999999999999999977666799999999999999999764321 248999999977643 12 58999
Q ss_pred EEEcccccch----hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 200 IYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 200 Ii~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
|++...-..- -.-.++++.+.+.|+|||++++...+.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9986532111 123679999999999999999987654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=8.5e-08 Score=87.18 Aligned_cols=103 Identities=16% Similarity=0.018 Sum_probs=82.5
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC---------------eEEEEeccCCCcc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN---------------VEIIVADISTFEM 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~---------------v~~~~~d~~~~~~ 193 (357)
++.+|||..||+|..++..+...+..+|+++|+|+.+++.+++|++.++..+ +.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 5789999999999999988887766799999999999999999999887532 5566666554322
Q ss_pred c--cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 194 E--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 194 ~--~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
. ..||+|...+ + ..+..+++.+.+.++.||.|.+....
T Consensus 125 ~~~~~fDvIDiDP-f---Gs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhcCcCCcccCCC-C---CCcHHHHHHHHHHhccCCEEEEEecC
Confidence 2 5699999886 3 24467899999999999999987543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=3e-07 Score=74.87 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=81.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCcccHHHHHHHHHC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-
Q 018346 117 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 193 (357)
Q Consensus 117 ~l~~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 193 (357)
.+.++.++..+ .++.+|||+||+.|+.+..+.+.. +...++++|+.+. ..++++.++++|+.+...
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~ 77 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVM 77 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhh
Confidence 34445555554 688999999999999999998764 4578999998763 234589999999876321
Q ss_pred --------ccCccEEEEcccccch-----------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 194 --------EASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 194 --------~~~fD~Ii~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..++|+|+|......- .-....+.-+.++|++||.+++-.+..
T Consensus 78 ~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 1579999998865322 113456777789999999999988764
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=6.7e-08 Score=83.11 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 194 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 194 (357)
..++.+++.+.+.++..|||||||.|.++..|++. +.+|+++|+++..++..++..... ++++++.+|+.++...
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcccc
Confidence 35667788888888999999999999999999987 679999999999988887644322 3899999999886532
Q ss_pred -----cCccEEEEcccccch
Q 018346 195 -----ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 -----~~fD~Ii~~~~~~~~ 209 (357)
++--.|++|.+++-.
T Consensus 84 ~~~~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 84 LAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HHHHHTSCEEEEEECCTTTH
T ss_pred cccccCCCeEEEecchHHHH
Confidence 223478899888543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=3.7e-07 Score=87.10 Aligned_cols=120 Identities=8% Similarity=0.035 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCC------------------CcEEEEEcCCHHHHHHHHHHHHHcCC
Q 018346 117 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS------------------NCKITGICNSKTQKEFIEEQCRVLEL 178 (357)
Q Consensus 117 ~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p------------------~~~v~~vD~s~~~l~~a~~~~~~~~~ 178 (357)
+.+.+++.+...++.+|+|.+||+|.+...+.+... ...++|+|+++.+...|+.++.-.+.
T Consensus 152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 445566667777888999999999999887765321 12589999999999999998876654
Q ss_pred C-C----eEEEEeccCCCcc--ccCccEEEEcccccch--------------hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 179 Q-N----VEIIVADISTFEM--EASYDRIYSIEMFEHM--------------KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 179 ~-~----v~~~~~d~~~~~~--~~~fD~Ii~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+ + ..+...+...... ..+||+|++|+|+..- ...-.++..+.+.|+|||++.+..|..
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 2 1 1234444333211 1579999999999422 113458999999999999999988854
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.40 E-value=3.7e-07 Score=77.29 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHH----CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 191 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~ 191 (357)
..+..++... ++.+|||||++.|..+..++.. .+.++++++|+++...... ....++++++++|..+.
T Consensus 70 ~~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 70 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----ASDMENITLHQGDCSDL 141 (232)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GGGCTTEEEEECCSSCS
T ss_pred HHHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hccccceeeeecccccH
Confidence 3455566555 4679999999999988776643 2578999999987532211 11235899999997754
Q ss_pred cc-----ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 192 EM-----EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 192 ~~-----~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
.. ...+|+|+.... |.......-+ .+.++|+|||++++++.
T Consensus 142 ~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 22 145898887765 3332222223 35689999999999764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.11 E-value=1.7e-06 Score=72.77 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
..+.++.++..+.+..+|+|+|||.|..+..++...+...|.|+|+--...+ ........+.+-+++...+......+.
T Consensus 53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~dv~~l~~~ 131 (257)
T d2p41a1 53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVDVFFIPPE 131 (257)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhhHHhcCCC
Confidence 3556677777778888999999999999999997755568888887322100 000000111112344433322222236
Q ss_pred CccEEEEcccccch----h--hHHHHHHHHHHhcccCceEEEEeccC
Q 018346 196 SYDRIYSIEMFEHM----K--NYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
..|+|+|...-..- + -..++++.+.+.|+|||.+++-.+++
T Consensus 132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 79999998642211 1 12356788889999999999988764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.88 E-value=1.5e-05 Score=67.59 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=65.2
Q ss_pred HHHHcCCCCC--CEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC---------CCCeEEEEeccC
Q 018346 121 YCERSRLEDG--HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE---------LQNVEIIVADIS 189 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~---------~~~v~~~~~d~~ 189 (357)
+.+.++++.+ .+|||.-||.|..+..++.. +++|+++|-|+......+.++.... ..+++++++|..
T Consensus 78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~ 155 (250)
T d2oyra1 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence 3444454433 48999999999999999988 7899999999987766665544321 127899999976
Q ss_pred CCcc--ccCccEEEEcccccch
Q 018346 190 TFEM--EASYDRIYSIEMFEHM 209 (357)
Q Consensus 190 ~~~~--~~~fD~Ii~~~~~~~~ 209 (357)
+... .++||+|+..+++.+-
T Consensus 156 ~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHhccCCCCCEEEECCCCccc
Confidence 6432 2679999999999654
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.67 E-value=7.3e-05 Score=63.21 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHC----CC------------------------------------cE
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SN------------------------------------CK 155 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----p~------------------------------------~~ 155 (357)
.++...+...+...+..++|-.||||.+.+..+-.. |+ ..
T Consensus 37 ~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~ 116 (249)
T d1o9ga_ 37 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 116 (249)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCC
Confidence 344444444555667789999999999988876421 11 24
Q ss_pred EEEEcCCHHHHHHH---HHHHHHcCCC-CeEEEEeccCCCcc------ccCccEEEEcccccch---------hhHHHHH
Q 018346 156 ITGICNSKTQKEFI---EEQCRVLELQ-NVEIIVADISTFEM------EASYDRIYSIEMFEHM---------KNYQNLL 216 (357)
Q Consensus 156 v~~vD~s~~~l~~a---~~~~~~~~~~-~v~~~~~d~~~~~~------~~~fD~Ii~~~~~~~~---------~~~~~~l 216 (357)
++|.|+++.+++.| ++|+...|+. .|.+.+.|+++... +...++||+|+++..- ..+..+.
T Consensus 117 i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~ 196 (249)
T d1o9ga_ 117 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 196 (249)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHH
Confidence 67899999999988 4688888885 79999999876432 2457999999998532 2356777
Q ss_pred HHHHHhcccCceEEE
Q 018346 217 KKISKWMKEDTLLFV 231 (357)
Q Consensus 217 ~~~~~~LkpgG~l~~ 231 (357)
..+.+.+.....+++
T Consensus 197 ~~l~~~~p~~s~~~i 211 (249)
T d1o9ga_ 197 RSLASALPAHAVIAV 211 (249)
T ss_dssp HHHHHHSCTTCEEEE
T ss_pred HHHHccCCCCcEEEE
Confidence 778888854444444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.65 E-value=0.00051 Score=54.38 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=69.5
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
+++.+++++.+||-+||| .|..+..+++.. +++|+++|.+++-++.|++ .+. ...+...+..+..
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga-~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGA-DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTC-SEEEECCTTTSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCC-cEEEeccccccccchhhhhhh
Confidence 456678899999999998 577778888776 7899999999998777765 343 2222222111110
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
....+|+|+-...- ...++.+.++++|+|++++.-.
T Consensus 93 ~~~g~g~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred cccccCCceeeecCCC------hHHHHHHHHHHhcCCceEEEec
Confidence 01458988864321 4567888899999999888543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.49 E-value=0.00016 Score=57.54 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=67.3
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEe-ccCCCc--cccCc
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE--MEASY 197 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-d~~~~~--~~~~f 197 (357)
+.+.++.++.+||-+|+| .|..+..+++.. +++|+++|.|++.++.+++ .|.+ .++.. +-.+.. ..+.+
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----lGa~--~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----MGAD--HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS--EEEEGGGTSCHHHHSCSCE
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----cCCc--EEeeccchHHHHHhhhccc
Confidence 445678899999999998 677888888776 8999999999998877665 4543 22221 111111 12679
Q ss_pred cEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 198 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 198 D~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
|+|+....-.+- ..+....+.|+|+|++++.-
T Consensus 93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred ceEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence 988764322111 11345678999999998854
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.37 E-value=0.00064 Score=55.31 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=71.6
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
++..+++++.+||-+|||. |..+..+++.....+|+++|.++..++.|++. |. ..+. +..+.+.
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~-~~~~~~~~~~i~~~ 89 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIAD-LSLDTPLHEQIAAL 89 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEE-TTSSSCHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEE-eCCCcCHHHHHHHH
Confidence 4567889999999999997 66777778776556999999999988777653 43 2222 2111111
Q ss_pred --ccCccEEEEccccc------ch---hhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 --EASYDRIYSIEMFE------HM---KNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 --~~~fD~Ii~~~~~~------~~---~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
...+|+++-.-... +. ......++.+.++++|||++.+.-.
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 13589888543211 11 1235689999999999999988643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0018 Score=51.15 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=68.7
Q ss_pred HHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-------
Q 018346 121 YCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------- 192 (357)
.+++.++.++.+||=+|||. |..+..+++.....+|+++|.++..++.|++ .|.+. ++..+-.+..
T Consensus 18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~--~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL--VLQISKESPQEIARKVE 91 (171)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE--EEECSSCCHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcc--ccccccccccccccccc
Confidence 34567788999999999985 5566677777633389999999998777654 35421 2222211110
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
....+|+|+-...- ...++...++++|||++++.-.
T Consensus 92 ~~~g~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCCCceEEEeccCC------chhHHHHHHHhcCCCEEEEEec
Confidence 11468988875432 4568889999999999988543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=0.00052 Score=55.09 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=66.0
Q ss_pred HHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--------
Q 018346 123 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 192 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 192 (357)
+...++++.+||-+||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+ .++ |..+..
T Consensus 22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~--~vi--~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 22 EYPESFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEE----IGAD--LTL--NRRETSVEERRKAI 92 (182)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHH----TTCS--EEE--ETTTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEECCCccchhheeccccc-cccccccccccccccccccc----ccce--EEE--eccccchHHHHHHH
Confidence 44456789999999998 477888888887 65 89999999998877755 3432 122 221111
Q ss_pred ----cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 ----~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+|+|+-...- ...++...++|+|||++++.-
T Consensus 93 ~~~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 93 MDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHhhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEe
Confidence 01358988854321 245677889999999987754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0021 Score=50.87 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=68.3
Q ss_pred HHHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 120 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
.+.+..++.++.+||-.|+ |.|..++.+++.. +++|++++.|++..+.++ +.|.+. ++ |..+..
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~--vi--~~~~~~~~~~i 89 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHE--VF--NHREVNYIDKI 89 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE--EE--ETTSTTHHHHH
T ss_pred HHHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCccc--cc--ccccccHHHHh
Confidence 3455567789999999996 4678888889887 889999998988666554 355532 22 322211
Q ss_pred ----cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ----~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+.... ...++...++|+|+|+++..
T Consensus 90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence 1146999887532 24678888999999998874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.18 E-value=0.00081 Score=53.58 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------c
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------M 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~ 193 (357)
++..+++++.+||=+|||. |..+..+++.. ++ +|+++|.+++-++.+++ .|.+ .++...-.+.. .
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~----lGa~--~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKF----YGAT--DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHH----HTCS--EEECGGGSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHh----hCcc--ccccccchhHHHHHHHHh
Confidence 4667888999999999986 88888888876 54 79999999987776654 4432 22222111110 0
Q ss_pred c-cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEec
Q 018346 194 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. ..+|+|+-...- ...++...++++|+|++++.-.
T Consensus 93 ~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 1 349988865432 2456777899999999988543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.16 E-value=0.00047 Score=60.75 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCC------CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC
Q 018346 117 MLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 190 (357)
Q Consensus 117 ~l~~l~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 190 (357)
.++.+++.+++. .+..|||||+|.|.++..|.+.....+|+++|+++...+..++.... ++++++.+|+..
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYD 101 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTC
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhh
Confidence 455566655442 46789999999999999998774235899999999999888776532 378999999875
Q ss_pred C
Q 018346 191 F 191 (357)
Q Consensus 191 ~ 191 (357)
+
T Consensus 102 ~ 102 (322)
T d1i4wa_ 102 W 102 (322)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.07 E-value=0.00028 Score=55.51 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-cCccEEEEcccc
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 206 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~Ii~~~~~ 206 (357)
++.+|+=||+|. |..++..+..+ +++|+++|.+++.++..+..... +++....+-..+... ...|+||..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence 568999999995 67788888887 89999999999988777655432 455555543332212 578999998766
Q ss_pred cchhhHHHHHHHHHHhcccCceEE
Q 018346 207 EHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 207 ~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
..-+.+.-+-+++.+.+|||.+++
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred CCcccCeeecHHHHhhcCCCcEEE
Confidence 555445556677889999999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.02 E-value=0.002 Score=50.60 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----cc
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~ 195 (357)
+++.++.++.+||=+||| .|..+..+++.. +++|+++|.++..++.+++ .|.+ .++..+-.+... ..
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK----LGAS--LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS--EEEETTTSCHHHHHHHHHS
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc----cCcc--ccccccchhHHHHHHHhhc
Confidence 355678899999999997 467777788776 7899999999997766654 4542 223222222110 12
Q ss_pred Ccc-EEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD-~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+| .|++... ...++...+.|+|||++++.
T Consensus 93 g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 93 GAHGVLVTAVS-------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp SEEEEEECCSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCccccccccc-------chHHHHHHHHhcCCcEEEEE
Confidence 334 4443322 34677888999999998874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.02 E-value=0.0022 Score=50.80 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=69.3
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 119 ELYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
..+.+..+++++.+||=+|||. |..+..+++......|+++|.++.-++.+++ .|.+ .++..+-.+..
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--HVINSKTQDPVAAIKE 91 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--EEEETTTSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe--EEEeCCCcCHHHHHHH
Confidence 3456667788999999999974 5566677776645578899999987777665 3442 33333322211
Q ss_pred -cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 -~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
.++.+|+|+-...- ...++.+.++++|+|++++.-
T Consensus 92 ~t~gg~D~vid~~G~------~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 92 ITDGGVNFALESTGS------PEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HTTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred HcCCCCcEEEEcCCc------HHHHHHHHhcccCceEEEEEe
Confidence 01468988864322 456788889999999988753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.99 E-value=0.0056 Score=48.46 Aligned_cols=102 Identities=12% Similarity=-0.015 Sum_probs=70.2
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc-----
Q 018346 120 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~----- 192 (357)
.+++..+++++.+||=+|||. |..+..+++......|+++|.+++.++.|++ .|.+ .++...-.+ ..
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT--DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC--cccCCccchhhhhhhHh
Confidence 345567788999999999986 8888889988733489999999997766655 4542 222211111 10
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccC-ceEEEEe
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 233 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 233 (357)
....+|+|+-... ....+....+.++|| |++++.-
T Consensus 93 ~~~~~G~d~vie~~G------~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 93 ELTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred hhhcCCCcEEEEecc------cchHHHHHHHHhhcCCeEEEecC
Confidence 1156899886432 245788899999996 9988854
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.69 E-value=0.17 Score=44.21 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=69.0
Q ss_pred CCEEEEECCcccHHHHHH--------HHH--------CCCcEEEEEcCCHHHHHHHHHHHHHcCC-CC---eEEEEeccC
Q 018346 130 GHTVLDVGCGWGSLSLYI--------AQK--------YSNCKITGICNSKTQKEFIEEQCRVLEL-QN---VEIIVADIS 189 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~l--------a~~--------~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~---v~~~~~d~~ 189 (357)
..+|.|+||.+|..++.+ .+. -|..+|..-|+-..-....-+.+....- .+ +..+.+.+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 367999999999877422 111 2456788888755543333333222111 11 233445555
Q ss_pred CCccc-cCccEEEEcccccchh---------------------------------hHHHHHHHHHHhcccCceEEEEecc
Q 018346 190 TFEME-ASYDRIYSIEMFEHMK---------------------------------NYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 190 ~~~~~-~~fD~Ii~~~~~~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.-.++ ++.|+++|..++||+. |...+|+.=.+-|+|||++++..++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 43334 8899999999998762 1344666656779999999999988
Q ss_pred CCCC
Q 018346 236 HKTF 239 (357)
Q Consensus 236 ~~~~ 239 (357)
....
T Consensus 212 r~~~ 215 (359)
T d1m6ex_ 212 RRSE 215 (359)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.63 E-value=0.0044 Score=48.66 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred HHHHcCCCCCCEEEEECC-c-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------
Q 018346 121 YCERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------ 192 (357)
.+++.++.++.+||=+|| | .|..+..+++......|+++|.+++.++.+++ .|.+ .++..+-.+..
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRI 92 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--eeeccCCcCHHHHHHHH
Confidence 345677889999999997 3 56667777776544799999999987777665 3442 22322222211
Q ss_pred -cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 -~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
....+|+|+....- ...++...+.++|||++++.-
T Consensus 93 ~~~~~~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 93 TESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred hhcccchhhhccccc------chHHHhhhhhcccCCEEEEec
Confidence 11459988875432 455677789999999988753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0049 Score=48.34 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=66.7
Q ss_pred HHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c--ccC
Q 018346 122 CERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M--EAS 196 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~--~~~ 196 (357)
++..+++++.+||=+||| .|.++..+++.. +++++++|.+++..+.+++ .|.+ .++ |..+.. . .+.
T Consensus 23 l~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~----lGad--~~i--~~~~~~~~~~~~~~ 93 (168)
T d1uufa2 23 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD--EVV--NSRNADEMAAHLKS 93 (168)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS--EEE--ETTCHHHHHTTTTC
T ss_pred HHHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc----cCCc--EEE--ECchhhHHHHhcCC
Confidence 456788899999999997 477888888887 8899999999987665554 4543 222 222211 1 156
Q ss_pred ccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 197 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 197 fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+++-.-.-. ..++...+.|+|+|++++.-
T Consensus 94 ~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 94 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred Cceeeeeeecc------hhHHHHHHHHhcCCEEEEec
Confidence 99888654321 23556778999999998853
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.52 E-value=0.0029 Score=53.03 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR 174 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~ 174 (357)
.+++.+++... .+|..|||.-||+|..+.+..+. +-+.+|+|++++.++.|++++.
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 45566666553 57889999999999999887766 7899999999999999999864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.01 Score=46.18 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=63.2
Q ss_pred HHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-------
Q 018346 122 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 193 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 193 (357)
+...++.++.+||=.|||. |..+..+++.. +++|+++|.++..++.+++ .|.+ .+. |..+...
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~----~Ga~---~~~-~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGAD---LVV-NPLKEDAAKFMKEK 90 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCS---EEE-CTTTSCHHHHHHHH
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh----cCcc---eec-ccccchhhhhcccc
Confidence 4456788999999999985 55566666665 7899999999998776654 4542 111 2211110
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
...+|.++...+- ...+....++|+|+|.+++.-
T Consensus 91 ~~~~~~~v~~~~~------~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 91 VGGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HSSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred cCCCceEEeecCC------HHHHHHHHHHhccCCceEecc
Confidence 1334444443321 456788899999999988854
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.45 E-value=0.006 Score=52.85 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=55.3
Q ss_pred CEEEEECCcccHHHHHHHHHCCCcEE-EEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccccc
Q 018346 131 HTVLDVGCGWGSLSLYIAQKYSNCKI-TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 207 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~p~~~v-~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~~~ 207 (357)
.+|+|+-||.|++...+... |.++ .++|+++.+.+..+.|. .-.++.+|+.++... ...|+++..++-+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence 47999999999999988877 5554 59999999887777664 235678999987543 5789999988765
Q ss_pred ch
Q 018346 208 HM 209 (357)
Q Consensus 208 ~~ 209 (357)
.+
T Consensus 73 ~f 74 (324)
T d1dcta_ 73 SW 74 (324)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.41 E-value=0.0013 Score=52.19 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=64.5
Q ss_pred HHHcCCCCCCEEEEECC-c-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----ccc
Q 018346 122 CERSRLEDGHTVLDVGC-G-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEA 195 (357)
Q Consensus 122 ~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~ 195 (357)
++..+++++.+||=.|. | .|..+..+++.. +++|++++.+++..+.+++ .|.+.+ + |..+.. ...
T Consensus 20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~----lGa~~~--i--~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAEEA--A--TYAEVPERAKAWG 90 (171)
T ss_dssp HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCSEE--E--EGGGHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccc----ccccee--e--ehhhhhhhhhccc
Confidence 45567889999999884 3 477888889887 7899999999887665544 555322 1 322221 115
Q ss_pred CccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 196 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+|+|+-... + .+....++|+|+|+++..
T Consensus 91 g~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEVRG----K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEECSC----T----THHHHHTTEEEEEEEEEC
T ss_pred cccccccccc----h----hHHHHHHHHhcCCcEEEE
Confidence 6999886321 1 246678899999998764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.36 E-value=0.011 Score=46.27 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=58.3
Q ss_pred EEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccch
Q 018346 132 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 209 (357)
Q Consensus 132 ~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~~ 209 (357)
+|+=||||. |.++..|.+..+..+|+++|.+++.++.+++. +. +.-...+.... .....|+|+...+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--~~~~~~~~~~~-~~~~~dlIila~p~~-- 73 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--IDEGTTSIAKV-EDFSPDFVMLSSPVR-- 73 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--CSEEESCGGGG-GGTCCSEEEECSCHH--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--chhhhhhhhhh-hccccccccccCCch--
Confidence 588899984 44566666665567999999999988777653 32 11122222211 113579998876654
Q ss_pred hhHHHHHHHHHHhcccCceEE
Q 018346 210 KNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 210 ~~~~~~l~~~~~~LkpgG~l~ 230 (357)
....+++++.+.++++..+.
T Consensus 74 -~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 74 -TFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp -HHHHHHHHHHHHSCTTCEEE
T ss_pred -hhhhhhhhhhcccccccccc
Confidence 45677888889998876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.003 Score=50.19 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=67.5
Q ss_pred HHHHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCC--c-c
Q 018346 119 ELYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF--E-M 193 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~--~-~ 193 (357)
..+.+.....++.+||=-|+ |.|..++.+++.. +++|+++..|++-.+.+++ .|.+.+.-...+..+. . .
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLD 95 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhh
Confidence 33445556667889999885 5678899999887 8999999988887666654 4543221111111111 1 1
Q ss_pred ccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 194 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 194 ~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.+.+|+|+-+-. ...+....++|+|||+++..-+.
T Consensus 96 ~~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 96 KQRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp SCCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred ccCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecc
Confidence 257998876533 22467788999999999885543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.24 E-value=0.019 Score=45.25 Aligned_cols=103 Identities=13% Similarity=0.002 Sum_probs=63.5
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------
Q 018346 120 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------ 192 (357)
.+.+..+++++.+|+=+|||. |..+..+++.....+|+++|.+++-++.|++. |.+ ..+-..|.....
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~-~~in~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT-ECISPKDSTKPISEVLSE 94 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS-EEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc-EEECccccchHHHHHHHH
Confidence 345566788999999999984 55677777776446999999999988877764 432 111111211110
Q ss_pred -cccCccEEEEcccccchhhHHHHHHHHHHhc-ccCceEEEEe
Q 018346 193 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHH 233 (357)
Q Consensus 193 -~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~ 233 (357)
....+|+++-...- ...+......+ +++|++++.-
T Consensus 95 ~~g~G~d~vi~~~g~------~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 95 MTGNNVGYTFEVIGH------LETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HHTSCCCEEEECSCC------HHHHHHHHTTSCTTTCEEEECS
T ss_pred hccccceEEEEeCCc------hHHHHHHHHHhhcCCeEEEEEE
Confidence 11468988765332 23344444444 5668887754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.11 E-value=0.0043 Score=53.72 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.+++.++... ..++..|||.-||+|..+.+..+. +.+.+|+|+|++.++.|++++...
T Consensus 238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 3555566554 357899999999999999988776 889999999999999998876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.11 E-value=0.0069 Score=51.29 Aligned_cols=58 Identities=24% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 018346 116 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 176 (357)
Q Consensus 116 ~~l~~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~ 176 (357)
.+++.+++.. ..++..|||.-||+|..+.+..+. +-+.+|+|+++..++.|++++...
T Consensus 195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3555666655 357899999999999999988877 789999999999999999998764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.95 E-value=0.01 Score=46.66 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------cccCcc
Q 018346 126 RLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------MEASYD 198 (357)
Q Consensus 126 ~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------~~~~fD 198 (357)
.+.++.+||-+|+|. |..+..+++......|+++|.+++.++.+++ .|.+ .++..+-.... ....+|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCHHHHHHHHTTTCCEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--eeecCcccHHHHHHHhhCCCCce
Confidence 357889999999985 4555677766545689999999987766664 3432 23322211110 014589
Q ss_pred EEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 199 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 199 ~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+|+-...- ...++...+.|++||++++.-
T Consensus 103 ~vid~~g~------~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 103 VAMDFVGS------QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEESSCC------HHHHHHGGGGEEEEEEEEECC
T ss_pred EEEEecCc------chHHHHHHHHHhCCCEEEEEe
Confidence 88865432 346788889999999998753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.90 E-value=0.064 Score=41.93 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=64.9
Q ss_pred HHHHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 119 ELYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 119 ~~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
..+++..+++++.+||=+|||. |..+..+++.....+|+++|.+++-++.+++ .|.+ .++...-.+..
T Consensus 17 ~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~--~~i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 17 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--ECLNPKDYDKPIYEVI 90 (174)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc--EEEcCCCchhHHHHHH
Confidence 3455667788999999999985 4556666766534689999999998877765 4542 22221111111
Q ss_pred ---cccCccEEEEcccccchhhHHHHHHHHHHhcc-cCceEEEEec
Q 018346 193 ---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMK-EDTLLFVHHF 234 (357)
Q Consensus 193 ---~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~ 234 (357)
..+.+|+|+-.... ...+......++ ++|.+++.-.
T Consensus 91 ~~~~~~G~d~vid~~g~------~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 91 CEKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp HHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred HHhcCCCCcEEEEcCCC------chHHHHHHHHHHHhcCceEEEEE
Confidence 01458988864332 345555555565 5688877543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.82 E-value=0.073 Score=41.37 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHHHcCCCCCCEEEEECCc-ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEec-cCCCc-----
Q 018346 120 LYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-ISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d-~~~~~----- 192 (357)
.+.+..+++++.+||=.||| .|..+..+++......|+++|.+++.++.+++ .|.+ .++..+ -.+..
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~--~~i~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT--ECINPQDFSKPIQEVLI 92 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc--EEEeCCchhhHHHHHHH
Confidence 34556678899999999986 45667777777634689999999997766654 4542 222221 11110
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..+.+|+|+-...- ...++.+..++++||.+++..
T Consensus 93 ~~~~~g~D~vid~~G~------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 93 EMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHcCCCCcEeeecCCC------HHHHHHHHHhhcCCceeEEEE
Confidence 11468998875432 356778888999998876643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.02 Score=45.18 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=66.0
Q ss_pred HHHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 120 LYCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
.+.+...++++.+||=.|. |.|..+..+++.. ++++++++.+++..+.++ +.|.+. .+..+-.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~~--vi~~~~~~~~~~v~~ 88 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVEY--VGDSRSVDFADEILE 88 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCSE--EEETTCSTHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----cccccc--cccCCccCHHHHHHH
Confidence 3445566788999999773 4678888888876 789999888887665554 345532 2221111111
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+.... ...++.+.++|+|+|+++..
T Consensus 89 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 89 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 1146999997543 23567788999999998774
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.80 E-value=0.027 Score=44.44 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=67.3
Q ss_pred HHHHHcCCCCCCEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----
Q 018346 120 LYCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----- 192 (357)
.+.+..+++++.+||=.|++ .|..++.+++.. +++|++++.+++..+.+++ .|.+.+ +..+-.+..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~----~Ga~~v--i~~~~~~~~~~~~~ 92 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFDAA--FNYKTVNSLEEALK 92 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEE--EETTSCSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHh----hhhhhh--cccccccHHHHHHH
Confidence 45556678899999988875 467888888887 8999999999886555544 454322 222222111
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+-.-. .+.++.+.++|+|+|.+++.
T Consensus 93 ~~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 93 KASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred HhhcCCCceeEEecC-------chhhhhhhhhccCCCeEEee
Confidence 1145898876432 34678899999999998874
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.74 E-value=0.01 Score=51.68 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc--cCccEEEEccc
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEM 205 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~Ii~~~~ 205 (357)
.+.+|+|+-||.|+++..|.+. +.+ +.++|+++.+++..+.|.... .++|+.++... ..+|+++..++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~~~~Dll~ggpP 80 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhcceeeeeecccc
Confidence 5789999999999999988776 555 557999999999888876421 24777776433 57999999886
Q ss_pred ccc
Q 018346 206 FEH 208 (357)
Q Consensus 206 ~~~ 208 (357)
-+.
T Consensus 81 Cq~ 83 (327)
T d2c7pa1 81 CQA 83 (327)
T ss_dssp CTT
T ss_pred cch
Confidence 543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.67 E-value=0.079 Score=41.28 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=64.0
Q ss_pred HHHHHcCCCCCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE-eccCCCc-----
Q 018346 120 LYCERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFE----- 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~d~~~~~----- 192 (357)
.+.+..+++++.+||=+|+|. |..+..+++.....+|+++|.+++-.+.+++ .|.+ ..+. .+..+..
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~--~~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--ECVNPQDYKKPIQEVLT 92 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe--eEEecCCchhHHHHHHH
Confidence 345666788999999999964 4466666766645799999999998776655 3432 2221 1222211
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCc-eEEEE
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVH 232 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~ 232 (357)
..+.+|+|+-.... ...++.....++++| .+++.
T Consensus 93 ~~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HHhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 11469998876443 345566777888864 44443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0027 Score=50.40 Aligned_cols=98 Identities=8% Similarity=0.048 Sum_probs=65.7
Q ss_pred HHHHcCCCCCCEEEEECCc--ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------
Q 018346 121 YCERSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG--~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------ 192 (357)
+.+...++++.+||=.|+| .|..+..+++.. +++|++++.|++..+.+++ .|.+ .++..+-.++.
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~--~vi~~~~~d~~~~v~~~ 92 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW--QVINYREEDLVERLKEI 92 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCe--EEEECCCCCHHHHHHHH
Confidence 3444567889999998665 577888888876 8999999999998776654 4543 22221111111
Q ss_pred -cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 -MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 -~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+....- ..+......|+|+|.+++.
T Consensus 93 t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 93 TGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred hCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeec
Confidence 11458987765432 2456788899999987663
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.085 Score=44.02 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=57.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc----------c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~----------~ 194 (357)
+++.+|=.|+++|. ++..|++. +++|+.+|.+++.++.+.+.+...+.+ ++.++.+|+.+... .
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57889999987663 44445554 889999999999999988888877653 78889999987320 1
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 87 ~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 87 HSGVDICINNAGL 99 (257)
T ss_dssp HCCCSEEEECCCC
T ss_pred cCCCCEEEecccc
Confidence 579999988744
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.39 E-value=0.009 Score=47.27 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=63.0
Q ss_pred CCCEEEEECCcc-cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEE----------eccCCCc-----
Q 018346 129 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV----------ADISTFE----- 192 (357)
Q Consensus 129 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~----------~d~~~~~----- 192 (357)
++.+|+=||+|. |..+...|..+ ++.|+++|+++..++..+..... .++... +...+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGK----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCE----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcc----eEEEeccccccccccccchhhcCHHHHH
Confidence 567999999995 66777778777 89999999999977666653211 111000 0000000
Q ss_pred -----c-c--cCccEEEEcccccchhhHHHHHHHHHHhcccCceEE
Q 018346 193 -----M-E--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 230 (357)
Q Consensus 193 -----~-~--~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 230 (357)
. . ...|+||.......-+.+.-+-+++.+.+|||.+++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 0 0 358999988766555444456677889999999754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.35 E-value=0.038 Score=42.74 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=55.7
Q ss_pred CEEEEECCcc--cHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcccccc
Q 018346 131 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 131 ~~vLDiGcG~--G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~~~~~ 208 (357)
.+|.=||+|. +.++..|.+. +.+|++.|.+++.++.+++ .+. +.....+.... ...|+|+..-+..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~----~~~--~~~~~~~~~~~---~~~DiIilavp~~- 68 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQL--VDEAGQDLSLL---QTAKIIFLCTPIQ- 68 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTS--CSEEESCGGGG---TTCSEEEECSCHH-
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH----hhc--cceeeeecccc---cccccccccCcHh-
Confidence 3677788873 3455566555 7899999999987766544 332 11122222211 5689999766543
Q ss_pred hhhHHHHHHHHHHhcccCceEEE
Q 018346 209 MKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 209 ~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
...++++++...|+|+..++-
T Consensus 69 --~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 69 --LILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp --HHHHHHHHHGGGSCTTCEEEE
T ss_pred --hhhhhhhhhhhhcccccceee
Confidence 456788888888888876543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.20 E-value=0.16 Score=43.37 Aligned_cols=105 Identities=8% Similarity=-0.027 Sum_probs=75.1
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCeEEEEeccCCCccc----c-----Cc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEME----A-----SY 197 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~d~~~~~~~----~-----~f 197 (357)
...|+.+|||-=.-...+. ..++.+++=+|. |+.++.-++.+...+. .+..++..|+.+.... . ..
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp CCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 4567789999876665542 234678889996 8888877777777654 2567888888752111 2 23
Q ss_pred cEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 198 DRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 198 D~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
-++++-.++.++ +....+++.+.+...||+.+++...+.
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~ 208 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 208 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 467777788888 567889999999999999999875543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.11 E-value=0.065 Score=47.30 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHcCCCCCCEEEEECCcccHHHHHHHHHC-------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcccc
Q 018346 123 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-------SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 195 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-------p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 195 (357)
...+..+..+|+|+|+|+|.++..+.... ...+++.+|.|+...+.-+++... ..++.++ .|+.+.+ .
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~~~i~w~-~~~~~~~--~ 147 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWH-DSFEDVP--E 147 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEE-SSGGGSC--C
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--cccceec-cChhhcc--c
Confidence 34454556789999999999988876543 135799999999866555554432 2355543 3444433 2
Q ss_pred CccEEEEcccccch
Q 018346 196 SYDRIYSIEMFEHM 209 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~ 209 (357)
..-+|++|..++.+
T Consensus 148 ~~g~iiaNE~fDAl 161 (365)
T d1zkda1 148 GPAVILANEYFDVL 161 (365)
T ss_dssp SSEEEEEESSGGGS
T ss_pred CCeEEEecccCccc
Confidence 23578888776554
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.016 Score=50.54 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCEEEEECCcccHHHHHHHHHCCCcE-EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc----cCccEEEEcc
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIE 204 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~p~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~Ii~~~ 204 (357)
+.+|+|+.||.|+++..+....=+.+ +.++|+++.+++..+.|.. +..++..|+.++... ..+|+++..+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----CCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 46899999999999988876621224 6699999998887776642 455677888876432 3689999988
Q ss_pred cccch
Q 018346 205 MFEHM 209 (357)
Q Consensus 205 ~~~~~ 209 (357)
+-..+
T Consensus 77 PCq~f 81 (343)
T d1g55a_ 77 PCQPF 81 (343)
T ss_dssp C----
T ss_pred ccccc
Confidence 76554
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.69 E-value=0.018 Score=45.03 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-Cc---cc
Q 018346 121 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE---ME 194 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~---~~ 194 (357)
+.+.....++.+||=-|+ |.|..+..+++.. +++|+++.-|++..+.+++ .|.+.+ +...|... .. ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~----lGad~v-i~~~~~~~~~~~~~~~ 88 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGASEV-ISREDVYDGTLKALSK 88 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCSEE-EEHHHHCSSCCCSSCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHh----hcccce-EeccchhchhhhcccC
Confidence 333333445667887764 5678899999887 8999999998876555544 455322 11122211 11 11
Q ss_pred cCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+.+|+|+-.-. ...+....++|+|+|++++.-
T Consensus 89 ~gvd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 89 QQWQGAVDPVG-------GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp CCEEEEEESCC-------THHHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEecCc-------HHHHHHHHHHhccCceEEEee
Confidence 56888765422 346778899999999988743
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.11 Score=43.56 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=71.3
Q ss_pred CCEEEEECCcccHHHHHHHHHC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 130 GHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~~~~~la~~~---p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
|++|-=|-.|+++++..+++.+ .+++|+.++.+++.++.+.+.++..+. ++.++.+|+.+... . +
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677555445555555554432 268999999999999998888887765 78999999987421 1 5
Q ss_pred CccEEEEcccccch--------hh-----------HHHHHHHHHHhcccCceEEEEe
Q 018346 196 SYDRIYSIEMFEHM--------KN-----------YQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 196 ~fD~Ii~~~~~~~~--------~~-----------~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
..|++|.|..+... .+ .-.+.+.+...|+++|.++...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 79999998754221 01 2345666778888999876643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.54 E-value=0.43 Score=36.65 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=61.5
Q ss_pred HHHHHcCCCCCCEEEEECCcccH-HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc------
Q 018346 120 LYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ 192 (357)
Q Consensus 120 ~l~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~------ 192 (357)
.+.+..+++++.+|+=+|||.+. .+..+++..-...|+++|.+++-++.+++ .|.+ .++..+-.+..
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd--~~in~~~~~~~~~~~~~ 92 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DFVNPNDHSEPISQVLS 92 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EEECGGGCSSCHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc--EEEcCCCcchhHHHHHH
Confidence 34556678899999999998744 45555555545689999999997766654 4543 22322111111
Q ss_pred --cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 193 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 193 --~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
....+|+|+-...- ...+......+++||..++
T Consensus 93 ~~~~~G~d~vid~~G~------~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 93 KMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEE
T ss_pred hhccCCcceeeeecCC------HHHHHHHHHHhhCCCccee
Confidence 01458988765432 3445666677666654444
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.42 E-value=0.037 Score=43.99 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=63.5
Q ss_pred HHHHcCCCCCCEEEEECCc---ccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEE-EeccCCCc----
Q 018346 121 YCERSRLEDGHTVLDVGCG---WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEII-VADISTFE---- 192 (357)
Q Consensus 121 l~~~~~~~~~~~vLDiGcG---~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~-~~d~~~~~---- 192 (357)
+.+...+.++.+||=+.+| .|..++.+++.. +++|+++--+++..+...+.+++.|.+.+-.. ..|..+..
T Consensus 20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~ 98 (189)
T d1gu7a2 20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIK 98 (189)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHH
T ss_pred HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHH
Confidence 4445567888888887332 467788888887 88998876555555555666677776422111 11222211
Q ss_pred -----cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 -----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 -----~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
....+|+|+-.- . ...+....++|+|+|+++..
T Consensus 99 ~~~~~~g~~vdvv~D~v-----g--~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 99 EWIKQSGGEAKLALNCV-----G--GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHTCCEEEEEESS-----C--HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHhhccCCceEEEECC-----C--cchhhhhhhhhcCCcEEEEE
Confidence 013578877432 1 23456678999999998764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.23 Score=40.86 Aligned_cols=75 Identities=24% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
.|+.+|=-|+++|. ++..+++. +++|+.+|.+++.++...+.+...+. ++.++.+|+.+... .
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57788888887763 55666666 89999999999999988888877765 89999999987421 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 83 g~idilinnag~ 94 (244)
T d1yb1a_ 83 GDVSILVNNAGV 94 (244)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCceeEeeccc
Confidence 568999988755
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.11 E-value=0.13 Score=37.89 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred EEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 204 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~ 204 (357)
+|+=+|+ |.++..+++.+ .+..|+.+|.+++.++.+.+. . .+.++.+|..+... . ...|.+++..
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 5666665 56666666543 268999999999987765543 1 56789999887421 1 5789888853
Q ss_pred cccchhhHHHHHHHHHHhcccCce
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTL 228 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~ 228 (357)
.-. ....+.....+.+.+.-.
T Consensus 74 ~~d---~~N~~~~~~~k~~~~~~i 94 (132)
T d1lssa_ 74 GKE---EVNLMSSLLAKSYGINKT 94 (132)
T ss_dssp SCH---HHHHHHHHHHHHTTCCCE
T ss_pred CcH---HHHHHHHHHHHHcCCceE
Confidence 332 223344455566777744
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.97 E-value=0.36 Score=39.97 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=56.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc---------cc--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------ME-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~-- 194 (357)
+++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.....+. ++.++.+|+.+.. ..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 57889988877653 45555555 88999999999999988888877765 7889999997632 01
Q ss_pred c-CccEEEEcccc
Q 018346 195 A-SYDRIYSIEMF 206 (357)
Q Consensus 195 ~-~fD~Ii~~~~~ 206 (357)
+ +.|+++.+...
T Consensus 84 ~~~idilvnnAG~ 96 (259)
T d2ae2a_ 84 HGKLNILVNNAGI 96 (259)
T ss_dssp TTCCCEEEECCCC
T ss_pred CCCceEEEECCce
Confidence 3 68999988643
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.77 E-value=0.21 Score=41.31 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=57.2
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 195 (357)
+++.+|=.|++.| ++..+++.+ .+++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4677888886554 666665543 378999999999999988888877665 78999999987320 1 5
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|++|.+...
T Consensus 87 ~iDilvnnag~ 97 (251)
T d2c07a1 87 NVDILVNNAGI 97 (251)
T ss_dssp CCCEEEECCCC
T ss_pred Cceeeeecccc
Confidence 79999988754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.72 E-value=0.35 Score=40.32 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCC-HHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s-~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~- 194 (357)
+|+++|=.|+++|. ++..|+++ +++|+.+|.+ ++.++.+.+.+...+. ++.++.+|+.+... .
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 57888888887663 55555655 8899999876 5666666666777665 78999999987320 1
Q ss_pred -cCccEEEEcccccch-------------------hhHHHHHHHHHHhcccCceEEEEe
Q 018346 195 -ASYDRIYSIEMFEHM-------------------KNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+..|+++.+...... ...-.+.+.+.+.|+.+|..++..
T Consensus 94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 578999988744221 113445677777888887766643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.57 E-value=0.089 Score=38.72 Aligned_cols=89 Identities=7% Similarity=0.047 Sum_probs=61.2
Q ss_pred CcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcccccchhhH
Q 018346 138 CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMKNY 212 (357)
Q Consensus 138 cG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~~~~~~~~~ 212 (357)
||.|..+..+++.+.+..++.+|.++...+.++. . .+.++.+|..+... . .+.+.+++...- +..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~---~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~---d~~ 75 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----S---GANFVHGDPTRVSDLEKANVRGARAVIVNLES---DSE 75 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----T---TCEEEESCTTSHHHHHHTTCTTCSEEEECCSS---HHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----c---CccccccccCCHHHHHHhhhhcCcEEEEeccc---hhh
Confidence 6788899999998877788999999997655432 2 67889999887321 1 568888875432 122
Q ss_pred HHHHHHHHHhcccCceEEEEeccC
Q 018346 213 QNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 213 ~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
...+-...+.+.|...++......
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~~~ 99 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAERY 99 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECSSG
T ss_pred hHHHHHHHHHHCCCceEEEEEcCH
Confidence 333445566788988877765443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.49 E-value=0.25 Score=40.95 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=69.4
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~v-D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 194 (357)
.|++||=.|++.| .++..|++. +++|+.. +.+++.++.+.+.....|. ++.++.+|+.+... .
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence 5788997775544 344455555 7888764 6777778888888888776 88999999986320 1
Q ss_pred -cCccEEEEcccccchh-------------------hHHHHHHHHHHhcccCceEEEEec
Q 018346 195 -ASYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
+..|+++.+....+.. ..-.+.+.+.+.|+.+|.+++...
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 5789999887553221 133456667777777777666443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.38 E-value=0.56 Score=36.57 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=61.5
Q ss_pred HHHHcCCCCC--CEEEEEC--CcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc----
Q 018346 121 YCERSRLEDG--HTVLDVG--CGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---- 192 (357)
Q Consensus 121 l~~~~~~~~~--~~vLDiG--cG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~---- 192 (357)
+.+...++++ .+||=.| .|.|..++.+++......|++++.+++..... ....|.+ ..+ |..+..
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad--~vi--~~~~~~~~~~ 92 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFD--AAV--NYKTGNVAEQ 92 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCS--EEE--ETTSSCHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccce--EEe--eccchhHHHH
Confidence 4455556655 7899877 46899999999987334677777777643322 2234443 222 222211
Q ss_pred ----cccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 193 ----MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 193 ----~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+..+|+|+-... ...++...++|+|+|+++..
T Consensus 93 ~~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 93 LREACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence 1145898875432 34678889999999998763
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.37 E-value=0.39 Score=39.77 Aligned_cols=75 Identities=16% Similarity=-0.010 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------ 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------------ 193 (357)
+++++|=-|+++|. ++..|++. +++|+.+|.+++.++.+.+.....+. ++.++.+|+.+...
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 47888888877663 45555555 88999999999999888888777665 79999999986320
Q ss_pred ccCccEEEEcccc
Q 018346 194 EASYDRIYSIEMF 206 (357)
Q Consensus 194 ~~~fD~Ii~~~~~ 206 (357)
.+..|+++.+...
T Consensus 84 ~g~idilvnnAG~ 96 (259)
T d1xq1a_ 84 GGKLDILINNLGA 96 (259)
T ss_dssp TTCCSEEEEECCC
T ss_pred CCCcccccccccc
Confidence 1468999988644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.43 Score=39.32 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=54.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHH-HcCCCCeEEEEeccCCCc-----c----c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-VLELQNVEIIVADISTFE-----M----E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~d~~~~~-----~----~- 194 (357)
+++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+... ..+. ++.++.+|+.+.. . .
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 47889999877653 45555555 8999999999988877766553 4454 7888999998732 0 1
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
++.|++|.+...
T Consensus 81 ~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 81 FGKLDTVVNAAGI 93 (251)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 579999988643
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.22 E-value=0.25 Score=40.99 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=56.8
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=.|++.| .++..+++. +++|+.++.+++.++.+.+.....+. ++.++.+|+.+... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 5789999998765 245555555 88999999999999988888887775 78889999987320 1
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 82 ~g~idilinnag~ 94 (258)
T d1ae1a_ 82 DGKLNILVNNAGV 94 (258)
T ss_dssp TSCCCEEEECCCC
T ss_pred CCCcEEEeccccc
Confidence 357888876644
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.93 E-value=0.31 Score=37.96 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc--c-ccCccEEEE
Q 018346 128 EDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EASYDRIYS 202 (357)
Q Consensus 128 ~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~Ii~ 202 (357)
.++.+||=.|. |.|..++.+++.. +++|+++.-+++..+.+++ .|.+ .++..+-.+.. . ...+|.|+-
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~----lGad--~vi~~~~~~~~~~l~~~~~~~vvD 102 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS----LGAS--RVLPRDEFAESRPLEKQVWAGAID 102 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTEE--EEEEGGGSSSCCSSCCCCEEEEEE
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHh----hccc--cccccccHHHHHHHHhhcCCeeEE
Confidence 34457776654 4677889999887 8999999999987665543 4432 22222222111 1 145787652
Q ss_pred cccccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 203 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 203 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
.+. ...+....+.|+++|+++..
T Consensus 103 -~Vg------g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 103 -TVG------DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp -SSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred -Ecc------hHHHHHHHHHhccccceEee
Confidence 222 34678899999999998874
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.22 Score=41.16 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=55.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~---------~- 194 (357)
+|+.+|=-|+++|. ++..++++ +++|+.+|.+++.++.+.+....... .++.++.+|+.+... .
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47788888876553 34444444 89999999999988877766544322 378999999987421 1
Q ss_pred -cCccEEEEcccccch
Q 018346 195 -ASYDRIYSIEMFEHM 209 (357)
Q Consensus 195 -~~fD~Ii~~~~~~~~ 209 (357)
++.|+++.+......
T Consensus 80 ~G~iDilVnnAg~~~~ 95 (254)
T d2gdza1 80 FGRLDILVNNAGVNNE 95 (254)
T ss_dssp HSCCCEEEECCCCCCS
T ss_pred cCCcCeeccccccccc
Confidence 579999988765443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.28 E-value=0.16 Score=45.06 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHHCCC--cEEEEEcCCHHHHHHHHHHHHHcCC
Q 018346 127 LEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLEL 178 (357)
Q Consensus 127 ~~~~~~vLDiGcG~G~~~~~la~~~p~--~~v~~vD~s~~~l~~a~~~~~~~~~ 178 (357)
+.++..++|+|+-.|..+..++...++ .+|+++|+++...+..++++..+..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 457889999999999999888766543 5999999999999999999887654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.85 Score=37.70 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 194 (357)
+|+++|=.|+++|. ++..|+++ |++|+.++.+++.++.+.+.........+.+...|..+... .
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 57899999988773 45555555 89999999999999888776655444477788888775321 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 91 g~~~~li~nag~ 102 (269)
T d1xu9a_ 91 GGLDMLILNHIT 102 (269)
T ss_dssp TSCSEEEECCCC
T ss_pred CCcccccccccc
Confidence 568888887644
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.44 E-value=0.43 Score=39.46 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCcc---------c-
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---------E- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~---------~- 194 (357)
.++++|=-|+++|. ++..|++. +++|+.+|.+++.++.+.+.....+.+ ++.++.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46788888887663 55566665 899999999999988887776655432 78899999987321 1
Q ss_pred -cCccEEEEccc
Q 018346 195 -ASYDRIYSIEM 205 (357)
Q Consensus 195 -~~fD~Ii~~~~ 205 (357)
+..|++|.|..
T Consensus 81 ~G~iDiLVnnAG 92 (258)
T d1iy8a_ 81 FGRIDGFFNNAG 92 (258)
T ss_dssp HSCCSEEEECCC
T ss_pred hCCCCEEEECCc
Confidence 57999998764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.39 E-value=0.21 Score=39.37 Aligned_cols=74 Identities=5% Similarity=0.014 Sum_probs=52.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----ccCccEEE
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----EASYDRIY 201 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~Ii 201 (357)
++++||=.|++.|. ++..+++. +++|+.++.+++.++.+.+...... ++.+...|..+... -+..|+++
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCeee
Confidence 68899999976553 44455555 7899999999998888877766542 45566677665321 16789999
Q ss_pred Ecccc
Q 018346 202 SIEMF 206 (357)
Q Consensus 202 ~~~~~ 206 (357)
.+...
T Consensus 98 n~Ag~ 102 (191)
T d1luaa1 98 TAGAI 102 (191)
T ss_dssp ECCCT
T ss_pred ecCcc
Confidence 87653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.15 E-value=0.58 Score=38.58 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCC-HHHHHHHHHHHHH-cCCCCeEEEEeccCCCcc---------c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNS-KTQKEFIEEQCRV-LELQNVEIIVADISTFEM---------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s-~~~l~~a~~~~~~-~~~~~v~~~~~d~~~~~~---------~ 194 (357)
+++++|=-|++.|. ++..|+++ +++|+.+|.+ ++.++.+.+.... .+. ++.++.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHH
Confidence 46788877766553 44455555 8899999986 5666666555543 344 78999999987320 1
Q ss_pred --cCccEEEEcccc
Q 018346 195 --ASYDRIYSIEMF 206 (357)
Q Consensus 195 --~~fD~Ii~~~~~ 206 (357)
++.|++|.|...
T Consensus 80 ~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 80 QMGRIDILVNNAGI 93 (260)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCcEEEeeccc
Confidence 579999988643
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.99 E-value=0.39 Score=39.80 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|.++|. ++..|++. +++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... .
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57889988876653 45555555 89999999999999988888877765 78999999987320 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
+..|++|.+..
T Consensus 81 g~iDilVnnaG 91 (260)
T d1zema1 81 GKIDFLFNNAG 91 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCeehhhhc
Confidence 57999998753
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.69 E-value=0.8 Score=37.60 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|++.| .++..|+++ +++|+.+|.+++.++.+.+.. +. +..++.+|+.+... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~---~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAEL---GE-RSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH---CT-TEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh---CC-CeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 5778887786655 244444544 899999999998776655443 33 67888899886321 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 79 g~iDilVnnAG~ 90 (253)
T d1hxha_ 79 GTLNVLVNNAGI 90 (253)
T ss_dssp CSCCEEEECCCC
T ss_pred CCCCeEEecccc
Confidence 578999988754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.58 E-value=0.059 Score=45.15 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=40.7
Q ss_pred eEEEEeccCCC---ccccCccEEEEccccc-----------chhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 181 VEIIVADISTF---EMEASYDRIYSIEMFE-----------HMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 181 v~~~~~d~~~~---~~~~~fD~Ii~~~~~~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
-.|+.+|..+. .+++++|+|+..+|+. +.......+.++.++|||||.+++....
T Consensus 5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 35677786653 1237899999999974 2334577889999999999999986543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.88 Score=37.07 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|++.|. ++..+++. +++|+.+|.+++.++...+... . ++.++.+|+.+... .
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~---~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG---A-NGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG---G-GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC---C-CCcEEEEEecCHHHhhhhhhhhhccc
Confidence 46778877866552 44445554 8899999999988776655442 2 67888999886320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 77 g~iDilVnnAg~ 88 (243)
T d1q7ba_ 77 GEVDILVNNAGI 88 (243)
T ss_dssp CSCSEEEECCCC
T ss_pred CCcceehhhhhh
Confidence 579999987643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.79 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.|+++|=-|+++|. ++..|++. +++|+.+|.+++.++...+.. .++.++.+|+.+... .
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 57889999977662 44445555 899999999998766554332 378899999987321 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
++.|++|.+..
T Consensus 78 g~iDilVnnAG 88 (250)
T d1ydea1 78 GRLDCVVNNAG 88 (250)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEeccc
Confidence 57899998874
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.27 E-value=0.79 Score=37.53 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCCEEEEECCcc--c---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c
Q 018346 129 DGHTVLDVGCGW--G---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~--G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~ 194 (357)
+++++|=.|+++ | .++..|++. +++|+..+.++...+.+.+.....+ ++.++.+|+.+... .
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH
Confidence 578999999754 3 255556655 8899999999887777666555443 56788999886320 1
Q ss_pred --cCccEEEEccc
Q 018346 195 --ASYDRIYSIEM 205 (357)
Q Consensus 195 --~~fD~Ii~~~~ 205 (357)
++.|++|.+..
T Consensus 83 ~~g~iDilVnnag 95 (256)
T d1ulua_ 83 AFGGLDYLVHAIA 95 (256)
T ss_dssp HHSSEEEEEECCC
T ss_pred hcCCceEEEeccc
Confidence 57899887653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.95 Score=36.86 Aligned_cols=71 Identities=15% Similarity=0.355 Sum_probs=50.9
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------c-cCcc
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYD 198 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~fD 198 (357)
.|+++|=.|+++| .++..+++. +++|+.+|.+++.++.+.+.. .++..++.|+.+... . ++.|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 5789999997766 345555555 889999999998776554432 267888999876321 1 6799
Q ss_pred EEEEcccc
Q 018346 199 RIYSIEMF 206 (357)
Q Consensus 199 ~Ii~~~~~ 206 (357)
++|.+...
T Consensus 79 ilVnnAg~ 86 (244)
T d1pr9a_ 79 LLVNNAAV 86 (244)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99987744
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.94 E-value=1.2 Score=36.10 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=65.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.++++|=.|++.|. ++..|+++ +++|+.++.+.+.++...+ +.+. ++.++++|+.+... .
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~---~~~~-~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA---ALEA-EAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH---TCCS-SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH---HcCC-ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57889988877653 44444544 8999999999986654433 3343 78899999986321 1
Q ss_pred cCccEEEEcccccchh-------------------hHHHHHHHHHHhcccCceEEEEec
Q 018346 195 ASYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 195 ~~fD~Ii~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
++.|+++.+....... ..-.+.+.+...++.++.+++...
T Consensus 78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 5799999987543221 123345566677777777665443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.56 Score=35.17 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=57.0
Q ss_pred EEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc----c-cCccEEEEcc
Q 018346 132 TVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIE 204 (357)
Q Consensus 132 ~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~fD~Ii~~~ 204 (357)
+|+=+|+ |..+..+++.+ .+..|+.+|.+++......+.... ..+.++.+|..+... . +..|.|++..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~---~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc---CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 4555555 56666665543 267899999998754333333222 267899999887421 1 5688888764
Q ss_pred cccchhhHHHHHHHHHHhcccCceEEEEecc
Q 018346 205 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 205 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
.-. .....+-...+.+.|...++.....
T Consensus 80 ~~d---~~n~~~~~~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 80 DND---ADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp SCH---HHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ccH---HHHHHHHHHHHHhCCCCceEEEEcC
Confidence 321 1222333445667788877775543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.87 E-value=0.41 Score=34.95 Aligned_cols=88 Identities=7% Similarity=0.042 Sum_probs=50.2
Q ss_pred EEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccc-----cCccEEEEccc
Q 018346 133 VLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----ASYDRIYSIEM 205 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~Ii~~~~ 205 (357)
++=+|+ |.++..+++.+ -+..|+++|.+++.++.++. . ....+.+|..+...- ...|.|++...
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y---ATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----T---CSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----h---CCcceeeecccchhhhccCCccccEEEEEcC
Confidence 444555 55666655543 27899999999997665532 2 345677888764321 46787776543
Q ss_pred ccchhhHHHHHHHHHHhcccCceEEEE
Q 018346 206 FEHMKNYQNLLKKISKWMKEDTLLFVH 232 (357)
Q Consensus 206 ~~~~~~~~~~l~~~~~~LkpgG~l~~~ 232 (357)
-. +-...+-.+.+.+.|...++..
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 74 AN---IQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp SC---HHHHHHHHHHHHHTTCSEEEEE
T ss_pred ch---HHhHHHHHHHHHHcCCCcEEee
Confidence 21 1222333333344555665553
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.62 E-value=0.7 Score=37.99 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 130 GHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 130 ~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
++.+|=-|++.|. ++..|+++ +++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 2 gKValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4566777765543 44444544 89999999999999988888887776 79999999987421 1 5
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
+.|++|.|...
T Consensus 79 ~iDilVnnAG~ 89 (257)
T d2rhca1 79 PVDVLVNNAGR 89 (257)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 78999987643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.03 E-value=0.12 Score=44.07 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred CeEEEEeccCCCc---cccCccEEEEcccccc--------------hhhHHHHHHHHHHhcccCceEEEEeccC
Q 018346 180 NVEIIVADISTFE---MEASYDRIYSIEMFEH--------------MKNYQNLLKKISKWMKEDTLLFVHHFCH 236 (357)
Q Consensus 180 ~v~~~~~d~~~~~---~~~~fD~Ii~~~~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 236 (357)
+-.++++|..+.. .++++|+|+..+|+.. +......+..+.++|+|+|.+++.....
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccch
Confidence 3477888876521 2388999999999832 2335678999999999999999876543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=88.74 E-value=1.9 Score=34.99 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=47.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
.|+++|=-|++.|. ++..|++. +++|+.+|.+++..+.+++ . +..++.+|+.+... .
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~----~---~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVAEA----I---GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHHH----H---TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----c---CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 57889988866552 34445555 8899999999886554432 2 45678899987320 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
++.|++|.|...
T Consensus 75 G~iDiLVnnAG~ 86 (248)
T d2d1ya1 75 GRVDVLVNNAAI 86 (248)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCeEEEeCcC
Confidence 579999987643
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=0.57 Score=38.60 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--c
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--A 195 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~ 195 (357)
+++++|=-|++. .++..+++.+ .+++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... . +
T Consensus 10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 477888776554 4555554443 378999999999999988888887765 78899999987320 1 5
Q ss_pred CccEEEEcccc
Q 018346 196 SYDRIYSIEMF 206 (357)
Q Consensus 196 ~fD~Ii~~~~~ 206 (357)
..|+++.+...
T Consensus 88 ~iDilvnnAG~ 98 (255)
T d1fmca_ 88 KVDILVNNAGG 98 (255)
T ss_dssp SCCEEEECCCC
T ss_pred CCCEeeeCCcC
Confidence 79999988643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=1.1 Score=35.10 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=65.7
Q ss_pred CEEEEECCcccH--HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------CC---------------CCeEEEEe
Q 018346 131 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL---------------QNVEIIVA 186 (357)
Q Consensus 131 ~~vLDiGcG~G~--~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~~---------------~~v~~~~~ 186 (357)
.+|-=||+|.=+ ++..++.. |..|+.+|.+++.++.+++++... +. .++.+. .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 478889998633 34444444 899999999999999887765432 11 012222 1
Q ss_pred ccCCCccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 187 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 187 d~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
|..+. -...|+|+-. +.+.++-..++++++.+.++|+..+.-.+.+..
T Consensus 82 d~~~a--~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 82 DAASV--VHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp CHHHH--TTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred hhHhh--hcccceehhh-cccchhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 21110 1346877754 456666788999999999999988766555443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.42 E-value=1 Score=34.36 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=55.7
Q ss_pred CEEEEECCcccHH--HHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEEec--cCCCccc--cCccEEEEc
Q 018346 131 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVAD--ISTFEME--ASYDRIYSI 203 (357)
Q Consensus 131 ~~vLDiGcG~G~~--~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~-~~~v~~~~~d--~~~~~~~--~~fD~Ii~~ 203 (357)
++|-=||+|.-+. +..|+++ +.+|+++|.++..++..++.-.... .+........ ......+ ...|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 5788899986543 3444554 7899999999987766554311000 0011111111 0111111 568998875
Q ss_pred ccccchhhHHHHHHHHHHhcccCceEEE
Q 018346 204 EMFEHMKNYQNLLKKISKWMKEDTLLFV 231 (357)
Q Consensus 204 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 231 (357)
-.-. ....+++++...|+++-.+++
T Consensus 80 v~~~---~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 VPAI---HHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SCGG---GHHHHHHHHGGGCCTTCEEEE
T ss_pred Echh---HHHHHHHHhhhccCCCCEEEE
Confidence 4332 457788999999998876543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.40 E-value=1.9 Score=34.94 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|+++|. ++..|++. +++|+.+|.+++.++.+.+. + ++.++.+|+.+... .
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~~-----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEA-----V-GAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT-----T-TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH-----c-CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 46788888887663 34444544 88999999999877655442 2 67788999887321 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
++.|++|.|..
T Consensus 76 g~iDilVnnAG 86 (242)
T d1ulsa_ 76 GRLDGVVHYAG 86 (242)
T ss_dssp SSCCEEEECCC
T ss_pred CCceEEEECCc
Confidence 57999998763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.17 E-value=0.59 Score=38.77 Aligned_cols=73 Identities=8% Similarity=0.069 Sum_probs=52.5
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----c----c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----M----E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-----~----~-- 194 (357)
+++.+|=.|+++|. ++..|++. +++|+.+|.+++.++.+.+.+... .++.++.+|+.+.. . .
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999977663 34444554 899999999999887776655433 26888999998732 0 1
Q ss_pred cCccEEEEccc
Q 018346 195 ASYDRIYSIEM 205 (357)
Q Consensus 195 ~~fD~Ii~~~~ 205 (357)
+..|++|.+..
T Consensus 81 g~iD~lVnnAG 91 (268)
T d2bgka1 81 GKLDIMFGNVG 91 (268)
T ss_dssp SCCCEEEECCC
T ss_pred CCcceeccccc
Confidence 57899998764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.14 E-value=0.75 Score=38.25 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc----------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM---------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~---------- 193 (357)
+|+++|=-|+++|. ++..|++. +++|+.+|.+++.++.+.+.+...+.+ ++.++.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 47788888877663 44555555 899999999999999888888777653 78999999987421
Q ss_pred c-cCccEEEEccc
Q 018346 194 E-ASYDRIYSIEM 205 (357)
Q Consensus 194 ~-~~fD~Ii~~~~ 205 (357)
. ++.|+++.+..
T Consensus 81 ~~G~iDilVnnAG 93 (274)
T d1xhla_ 81 KFGKIDILVNNAG 93 (274)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCceEEEeecc
Confidence 1 57899998753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.08 E-value=0.72 Score=38.62 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----------c
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 194 (357)
+|+++|=-|++.| .++..|++. |++|+.+|.++..++.+.+......-.++.++.+|+.+... .
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence 5789999998766 345555555 89999999999888777665543322378899999887321 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 102 g~iDilvnnAg~ 113 (294)
T d1w6ua_ 102 GHPNIVINNAAG 113 (294)
T ss_dssp CSCSEEEECCCC
T ss_pred cccchhhhhhhh
Confidence 578999987643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.86 E-value=0.1 Score=42.99 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred EEEEeccCCCc---cccCccEEEEcccccc--------------hhhHHHHHHHHHHhcccCceEEEEe
Q 018346 182 EIIVADISTFE---MEASYDRIYSIEMFEH--------------MKNYQNLLKKISKWMKEDTLLFVHH 233 (357)
Q Consensus 182 ~~~~~d~~~~~---~~~~fD~Ii~~~~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~ 233 (357)
+++++|..+.. +.+++|+|+..+++.. +......++++.++|+|||.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 35777776531 2378999999999731 1224568889999999999987643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.60 E-value=0.76 Score=38.15 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=55.7
Q ss_pred CCCEEEEECCccc---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc---------c
Q 018346 129 DGHTVLDVGCGWG---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM---------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~---------~ 194 (357)
+++++|=.|+++| .++..|++. +++|+.+|.+++.++.+.+.+...+.. ++.++.+|+.+... .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678888887665 244555555 889999999999999888888776542 68999999987320 1
Q ss_pred --cCccEEEEcc
Q 018346 195 --ASYDRIYSIE 204 (357)
Q Consensus 195 --~~fD~Ii~~~ 204 (357)
+..|+++.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 5789999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=87.59 E-value=0.55 Score=36.72 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=66.2
Q ss_pred CEEEEECCcccHH--HHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc-------C-C---------CCeEEEEeccCCC
Q 018346 131 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L---------QNVEIIVADISTF 191 (357)
Q Consensus 131 ~~vLDiGcG~G~~--~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~ 191 (357)
.+|-=||+|+=+. +..++.. |.+|+.+|++++.++.+.++.... + . .++.. ..+...+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 81 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGDF 81 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTTG
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccccccc
Confidence 4678889875333 3334444 889999999999998887765422 1 0 01221 2222221
Q ss_pred ccccCccEEEEcccccchhhHHHHHHHHHHhcccCceEEEEeccCC
Q 018346 192 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 237 (357)
Q Consensus 192 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 237 (357)
...|+|+= .+.+.++-..++++++.+.++|+-.+.-.+.+..
T Consensus 82 ---~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~ 123 (186)
T d1wdka3 82 ---GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTIS 123 (186)
T ss_dssp ---GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred ---cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEecccccc
Confidence 45788886 5566777788999999999999988777666544
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=87.35 E-value=2 Score=34.75 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=50.6
Q ss_pred EEEECCcccH---HHHHHHHHCCCcE-------EEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------
Q 018346 133 VLDVGCGWGS---LSLYIAQKYSNCK-------ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------- 193 (357)
Q Consensus 133 vLDiGcG~G~---~~~~la~~~p~~~-------v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~--------- 193 (357)
||=-|+++|. ++..|++. +++ |+.++.+++.++...+.+...|. ++.++.+|+.+...
T Consensus 4 vlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHH
Confidence 4556766653 44555555 443 89999999999888887777665 78899999987420
Q ss_pred c--cCccEEEEcccc
Q 018346 194 E--ASYDRIYSIEMF 206 (357)
Q Consensus 194 ~--~~fD~Ii~~~~~ 206 (357)
. +..|+++.|...
T Consensus 81 ~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGV 95 (240)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HHcCCcceeeccccc
Confidence 1 579999988744
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.77 E-value=8.1 Score=32.59 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=68.9
Q ss_pred CCCEEEEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHc---------------------CCCCeEEEEec
Q 018346 129 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---------------------ELQNVEIIVAD 187 (357)
Q Consensus 129 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~---------------------~~~~v~~~~~d 187 (357)
+...|+-+|||.=.....+....|+..++=+|. |+.++.=++.+.+. ..++...+.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 456899999999888888877777777788887 54444333333221 01357888889
Q ss_pred cCCCcc---------c-cCccEEEEcccccch--hhHHHHHHHHHHhcccCceEEEEecc
Q 018346 188 ISTFEM---------E-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 235 (357)
Q Consensus 188 ~~~~~~---------~-~~fD~Ii~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 235 (357)
+.+... . ...-++++-.++.++ +...++++.+.+....+ .+++..+-
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~-~~i~YE~i 233 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHG-LWISYDPI 233 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSE-EEEEEEEC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCc-eEEEeccC
Confidence 887421 1 223478888888888 45677888888777554 44444443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=2.8 Score=33.85 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCCEEEEECCcc--c---HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCc-----------
Q 018346 129 DGHTVLDVGCGW--G---SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------- 192 (357)
Q Consensus 129 ~~~~vLDiGcG~--G---~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~----------- 192 (357)
.+++||=.|+++ | .++..|++. +++|+.++.+++..+.+.+.....+ ++.....|..+..
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhhh
Confidence 578999998866 4 355666666 8999999999887777766665554 4455666665421
Q ss_pred cccCccEEEEccc
Q 018346 193 MEASYDRIYSIEM 205 (357)
Q Consensus 193 ~~~~fD~Ii~~~~ 205 (357)
..+..|.++.+..
T Consensus 80 ~~~~~d~~v~~a~ 92 (258)
T d1qsga_ 80 VWPKFDGFVHSIG 92 (258)
T ss_dssp TCSSEEEEEECCC
T ss_pred cccccceEEEeec
Confidence 0156788887753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.42 E-value=1.1 Score=36.93 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEEeccCCCcc---------c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM---------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~---------~ 194 (357)
+++.+|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.+...+.. ++.++.+|+.+... .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46777777766553 34444444 899999999999999888888776542 68999999986320 1
Q ss_pred --cCccEEEEccc
Q 018346 195 --ASYDRIYSIEM 205 (357)
Q Consensus 195 --~~fD~Ii~~~~ 205 (357)
++.|+++.+..
T Consensus 82 ~~g~iDilvnnAG 94 (264)
T d1spxa_ 82 KFGKLDILVNNAG 94 (264)
T ss_dssp HHSCCCEEEECCC
T ss_pred HhCCCCEeecccc
Confidence 57999998753
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.98 E-value=0.61 Score=30.77 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=37.1
Q ss_pred HHcCCCCCCEEEEECC--cccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Q 018346 123 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 171 (357)
Q Consensus 123 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~ 171 (357)
+....+++.+||=.|. |.|..++.+++.. +++|+++.-|++..+.+++
T Consensus 25 ~~~~~~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 25 DAGVRPQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp HTTCCGGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH
T ss_pred hhhhccCCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHH
Confidence 3344567888888775 4677888888887 8899999999988777754
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.79 E-value=1 Score=30.89 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCCEEEEECC-ccc--HHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCccccCccEEEEcc
Q 018346 128 EDGHTVLDVGC-GWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIE 204 (357)
Q Consensus 128 ~~~~~vLDiGc-G~G--~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~Ii~~~ 204 (357)
....+|.=||. |+| .++..|.++ +.+|+|.|...... . +.....|+ .+..+...+.. ...|+||.++
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~--~-~~L~~~Gi---~v~~g~~~~~i--~~~d~vV~S~ 75 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVV--T-QRLAQAGA---KIYIGHAEEHI--EGASVVVVSS 75 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHH--H-HHHHHTTC---EEEESCCGGGG--TTCSEEEECT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChh--h-hHHHHCCC---eEEECCccccC--CCCCEEEECC
Confidence 34567888864 455 456667777 89999999864321 1 33344544 44444433221 4579988877
Q ss_pred ccc
Q 018346 205 MFE 207 (357)
Q Consensus 205 ~~~ 207 (357)
.+.
T Consensus 76 AI~ 78 (96)
T d1p3da1 76 AIK 78 (96)
T ss_dssp TSC
T ss_pred CcC
Confidence 653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.36 E-value=1.1 Score=36.40 Aligned_cols=71 Identities=14% Similarity=0.310 Sum_probs=49.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c--cCcc
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E--ASYD 198 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~fD 198 (357)
.|+++|=.|++.|. ++..|++. +++|+.+|.+++.++...+.. .++..+.+|+.+... . ++.|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 57899988877652 44445554 899999999988765544322 267888999886421 1 6789
Q ss_pred EEEEcccc
Q 018346 199 RIYSIEMF 206 (357)
Q Consensus 199 ~Ii~~~~~ 206 (357)
++|.+...
T Consensus 77 ilVnnAg~ 84 (242)
T d1cyda_ 77 LLVNNAAL 84 (242)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99987643
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.01 E-value=1.4 Score=36.07 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=51.2
Q ss_pred EEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--cCcc
Q 018346 133 VLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--ASYD 198 (357)
Q Consensus 133 vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~~fD 198 (357)
+|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.+...+. ++.++.+|+.+... . ++.|
T Consensus 4 alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 4556765442 34444444 89999999999999988888877765 78999999987320 1 5799
Q ss_pred EEEEccc
Q 018346 199 RIYSIEM 205 (357)
Q Consensus 199 ~Ii~~~~ 205 (357)
++|.|..
T Consensus 81 ilVnnAG 87 (255)
T d1gega_ 81 VIVNNAG 87 (255)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9998763
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.53 E-value=1.8 Score=33.21 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=51.5
Q ss_pred CEEEEECCcc-cHHHHHHHHHCCCcEEEEE-cCCHHHHHHHHHHHHHcCCC-CeEEEEeccCCCccccCccEEEEccccc
Q 018346 131 HTVLDVGCGW-GSLSLYIAQKYSNCKITGI-CNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFE 207 (357)
Q Consensus 131 ~~vLDiGcG~-G~~~~~la~~~p~~~v~~v-D~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~Ii~~~~~~ 207 (357)
.+|.=||||. |..-.......|+.+++++ |.+++.. +......+.+ ... ...|..++......|+|+...+-.
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~ll~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA---KAFATANNYPESTK-IHGSYESLLEDPEIDALYVPLPTS 77 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH---HHHHHHTTCCTTCE-EESSHHHHHHCTTCCEEEECCCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc---ccchhcccccccee-ecCcHHHhhhccccceeeecccch
Confidence 3678899984 4433333445678898876 8887643 3334445543 233 334555432224689877654332
Q ss_pred chhhHHHHHHHHHHhcccCceEEEEec
Q 018346 208 HMKNYQNLLKKISKWMKEDTLLFVHHF 234 (357)
Q Consensus 208 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 234 (357)
. -++.+..+|+.|=-++++-|
T Consensus 78 ~------h~~~~~~~l~~g~~v~~EKP 98 (184)
T d1ydwa1 78 L------HVEWAIKAAEKGKHILLEKP 98 (184)
T ss_dssp G------HHHHHHHHHTTTCEEEECSS
T ss_pred h------hcchhhhhhhccceeecccc
Confidence 1 12334555666655555544
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=84.05 E-value=4.5 Score=32.51 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=48.5
Q ss_pred EEEECCcccHHHHHHHHHC--CCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--cCcc
Q 018346 133 VLDVGCGWGSLSLYIAQKY--SNCKITGICN-SKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E--ASYD 198 (357)
Q Consensus 133 vLDiGcG~G~~~~~la~~~--p~~~v~~vD~-s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~--~~fD 198 (357)
||=-|+ ++.++..+++.+ .+++|+..|. +++.++...+.....+. ++.++.+|+.+... . ++.|
T Consensus 4 ~lITGa-s~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 4 VVVTGA-SRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp EEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTC-EEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred EEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 444454 445555555443 3789988765 67777777777777665 78899999987421 1 5799
Q ss_pred EEEEcccc
Q 018346 199 RIYSIEMF 206 (357)
Q Consensus 199 ~Ii~~~~~ 206 (357)
++|.+...
T Consensus 82 iLVnnAg~ 89 (244)
T d1edoa_ 82 VVVNNAGI 89 (244)
T ss_dssp EEEECCCC
T ss_pred cccccccc
Confidence 99987744
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=83.42 E-value=0.46 Score=39.49 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=74.6
Q ss_pred EEECCcccHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCC-----CccccCccEEEEcccccc
Q 018346 134 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 208 (357)
Q Consensus 134 LDiGcG~G~~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~Ii~~~~~~~ 208 (357)
+.+-+||-.++..+.+. .-+.+.+|+-|+-.+..++++.. ..++.+...|..+ +|++.+--+|+..++++-
T Consensus 87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~ 162 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER 162 (271)
T ss_dssp CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS
T ss_pred cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCC
Confidence 35678888888777655 67999999999987777665432 2389999999765 333455569999999998
Q ss_pred hhhHHHHHHHHHHhcc--cCceEEEEec
Q 018346 209 MKNYQNLLKKISKWMK--EDTLLFVHHF 234 (357)
Q Consensus 209 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~ 234 (357)
-+++.++.+.+.+.++ |.|++++=.|
T Consensus 163 k~ey~~v~~~l~~a~kr~~~g~~~iWYP 190 (271)
T d2oo3a1 163 KEEYKEIPYAIKNAYSKFSTGLYCVWYP 190 (271)
T ss_dssp TTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEee
Confidence 8899999888888887 7888877444
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.94 E-value=1.2 Score=36.42 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+..... .++.++.+|+.+... .
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46788888866552 34445554 899999999999887776655322 379999999987420 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
++.|++|.+...
T Consensus 81 G~iDiLVnnAg~ 92 (251)
T d1zk4a1 81 GPVSTLVNNAGI 92 (251)
T ss_dssp SSCCEEEECCCC
T ss_pred CCceEEEecccc
Confidence 579999987744
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.87 E-value=1.6 Score=35.44 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=51.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc---------c--
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-- 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-- 194 (357)
+++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+... +++.++.+|+.+... .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57889988987662 45555555 8899999999987766655432 278889999987321 1
Q ss_pred cCccEEEEcccc
Q 018346 195 ASYDRIYSIEMF 206 (357)
Q Consensus 195 ~~fD~Ii~~~~~ 206 (357)
+..|+++.+...
T Consensus 79 g~idilinnAG~ 90 (244)
T d1nffa_ 79 GGLHVLVNNAGI 90 (244)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCeEEEECCcc
Confidence 578999988744
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=82.06 E-value=0.99 Score=38.42 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=45.0
Q ss_pred CEEEEECCcccHHHHHHHHHC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc-----c-cCccEEEE
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E-ASYDRIYS 202 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~--p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~-~~fD~Ii~ 202 (357)
++||=.| |+|.++..+++.+ .+.+|+++|.....-............++++++++|+.+... . .++|+|+-
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 3677776 7888888877654 367999998421111111111111112389999999987431 1 36899996
Q ss_pred cccc
Q 018346 203 IEMF 206 (357)
Q Consensus 203 ~~~~ 206 (357)
....
T Consensus 80 lAa~ 83 (338)
T d1udca_ 80 FAGL 83 (338)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 5543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.49 E-value=1.2 Score=36.53 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHH-HHcCCCCeEEEEeccCCCcc----------c
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQC-RVLELQNVEIIVADISTFEM----------E 194 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~-~~~~~~~v~~~~~d~~~~~~----------~ 194 (357)
.++++|=-|++.|. ++..|++. +++|+.+|.+++.++.+.+.. +..+. ++.++.+|+.+... .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888866542 44445554 899999999988776665554 33454 78999999987420 1
Q ss_pred -cCccEEEEcccc
Q 018346 195 -ASYDRIYSIEMF 206 (357)
Q Consensus 195 -~~fD~Ii~~~~~ 206 (357)
+..|++|.+...
T Consensus 85 ~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 85 LGPISGLIANAGV 97 (260)
T ss_dssp SCSEEEEEECCCC
T ss_pred hCCCcEecccccc
Confidence 579999887643
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.24 E-value=2 Score=34.69 Aligned_cols=73 Identities=16% Similarity=0.382 Sum_probs=50.0
Q ss_pred CEEEEECCcccHHHHHHHHHC-----CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEEeccCCCcc------------
Q 018346 131 HTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------------ 193 (357)
Q Consensus 131 ~~vLDiGcG~G~~~~~la~~~-----p~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~------------ 193 (357)
++||=-|+++ +++..+++.+ .+++|+.++-+++.++.+++..+.. .++.++.+|+.+...
T Consensus 3 KtilITGas~-GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 79 (248)
T d1snya_ 3 NSILITGCNR-GLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEGVT 79 (248)
T ss_dssp SEEEESCCSS-HHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence 4688666555 4666666433 4789999999888777665544433 289999999987421
Q ss_pred c-cCccEEEEcccc
Q 018346 194 E-ASYDRIYSIEMF 206 (357)
Q Consensus 194 ~-~~fD~Ii~~~~~ 206 (357)
. ++.|+++.|..+
T Consensus 80 ~~~~iDiLvnNAg~ 93 (248)
T d1snya_ 80 KDQGLNVLFNNAGI 93 (248)
T ss_dssp GGGCCSEEEECCCC
T ss_pred hcCCcceEEeeccc
Confidence 1 468999988644
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=3.1 Score=34.75 Aligned_cols=76 Identities=9% Similarity=0.012 Sum_probs=54.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHHCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEEeccCCCcc--------
Q 018346 129 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM-------- 193 (357)
Q Consensus 129 ~~~~vLDiGcG~G~---~~~~la~~~p~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~-------- 193 (357)
+++++|=-|+++|. ++..|++. +++|+.+|.+++.++.+.+.+.... -.++.++.+|+.+...
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 67889988877653 34444554 8999999999998887776665431 1278999999987421
Q ss_pred -c--cCccEEEEcccc
Q 018346 194 -E--ASYDRIYSIEMF 206 (357)
Q Consensus 194 -~--~~fD~Ii~~~~~ 206 (357)
. +..|++|.+...
T Consensus 89 ~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 89 LDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCeEEEEeeccc
Confidence 1 579999988643
|